Multiple sequence alignment - TraesCS3A01G382500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G382500 chr3A 100.000 3568 0 0 1 3568 632362876 632366443 0.000000e+00 6589.0
1 TraesCS3A01G382500 chr3A 100.000 1619 0 0 3697 5315 632366572 632368190 0.000000e+00 2990.0
2 TraesCS3A01G382500 chr3A 96.970 33 1 0 4524 4556 57101273 57101241 7.440000e-04 56.5
3 TraesCS3A01G382500 chr3B 90.868 2639 186 28 952 3568 651605807 651608412 0.000000e+00 3487.0
4 TraesCS3A01G382500 chr3B 89.903 1654 101 18 3697 5315 651608443 651610065 0.000000e+00 2069.0
5 TraesCS3A01G382500 chr3D 91.106 2395 156 30 1210 3568 488885354 488882981 0.000000e+00 3190.0
6 TraesCS3A01G382500 chr3D 91.441 1624 101 12 3697 5309 488880187 488878591 0.000000e+00 2194.0
7 TraesCS3A01G382500 chr3D 91.599 1345 69 11 3770 5101 488882807 488881494 0.000000e+00 1818.0
8 TraesCS3A01G382500 chr3D 93.878 735 36 5 2837 3568 488880946 488880218 0.000000e+00 1099.0
9 TraesCS3A01G382500 chr3D 96.032 252 9 1 966 1216 488887061 488886810 4.950000e-110 409.0
10 TraesCS3A01G382500 chr4B 90.237 1352 112 10 2224 3568 85361853 85363191 0.000000e+00 1748.0
11 TraesCS3A01G382500 chr4B 88.592 973 55 21 3699 4644 85363224 85364167 0.000000e+00 1131.0
12 TraesCS3A01G382500 chr4B 83.940 604 72 21 28 618 616958595 616958004 6.010000e-154 555.0
13 TraesCS3A01G382500 chr4B 91.597 357 22 1 4508 4864 85364175 85364523 2.230000e-133 486.0
14 TraesCS3A01G382500 chr5A 92.079 606 41 4 10 611 567761926 567762528 0.000000e+00 846.0
15 TraesCS3A01G382500 chr5A 89.773 176 15 2 4247 4422 469268848 469268676 6.930000e-54 222.0
16 TraesCS3A01G382500 chr5A 81.132 212 26 10 3838 4041 469269402 469269197 1.980000e-34 158.0
17 TraesCS3A01G382500 chr6D 84.923 849 113 8 1213 2059 23105005 23104170 0.000000e+00 845.0
18 TraesCS3A01G382500 chr4D 85.040 742 100 9 1304 2041 64370789 64371523 0.000000e+00 745.0
19 TraesCS3A01G382500 chr4D 80.805 969 162 20 1217 2174 507883060 507882105 0.000000e+00 737.0
20 TraesCS3A01G382500 chr4D 94.444 36 2 0 4516 4551 366693445 366693480 7.440000e-04 56.5
21 TraesCS3A01G382500 chr7D 82.619 840 137 7 1222 2061 142047744 142048574 0.000000e+00 734.0
22 TraesCS3A01G382500 chr7D 80.876 868 140 19 1213 2067 421171754 421170900 0.000000e+00 660.0
23 TraesCS3A01G382500 chr7D 86.555 119 15 1 784 901 271752839 271752957 4.320000e-26 130.0
24 TraesCS3A01G382500 chr1B 82.102 866 140 10 1210 2067 299947191 299948049 0.000000e+00 726.0
25 TraesCS3A01G382500 chr1B 84.020 607 74 16 28 620 44615471 44616068 3.590000e-156 562.0
26 TraesCS3A01G382500 chr1B 81.250 624 81 30 15 621 389977319 389977923 6.230000e-129 472.0
27 TraesCS3A01G382500 chr1B 91.964 112 8 1 787 898 45710981 45711091 7.130000e-34 156.0
28 TraesCS3A01G382500 chr1B 91.818 110 8 1 789 898 45502264 45502372 9.220000e-33 152.0
29 TraesCS3A01G382500 chr1B 90.909 110 9 1 789 898 45444290 45444398 4.290000e-31 147.0
30 TraesCS3A01G382500 chr1B 90.909 110 9 1 789 898 45561572 45561680 4.290000e-31 147.0
31 TraesCS3A01G382500 chr7B 81.765 861 145 12 1210 2067 457782095 457782946 0.000000e+00 710.0
32 TraesCS3A01G382500 chr7B 89.362 47 4 1 4523 4569 367156650 367156695 2.070000e-04 58.4
33 TraesCS3A01G382500 chr6B 81.604 848 136 14 1213 2050 712560973 712560136 0.000000e+00 684.0
34 TraesCS3A01G382500 chr6B 76.243 362 52 22 3828 4175 47897175 47897516 1.530000e-35 161.0
35 TraesCS3A01G382500 chrUn 77.035 1302 228 45 2246 3496 96699114 96700395 0.000000e+00 682.0
36 TraesCS3A01G382500 chrUn 90.952 210 18 1 4246 4455 96701254 96701462 1.130000e-71 281.0
37 TraesCS3A01G382500 chrUn 75.154 487 87 21 3712 4175 96700599 96701074 1.170000e-46 198.0
38 TraesCS3A01G382500 chrUn 91.818 110 8 1 789 898 257481385 257481493 9.220000e-33 152.0
39 TraesCS3A01G382500 chr1D 85.783 626 68 16 2 621 340531776 340531166 1.250000e-180 643.0
40 TraesCS3A01G382500 chr1D 94.444 36 2 0 4516 4551 44639034 44639069 7.440000e-04 56.5
41 TraesCS3A01G382500 chr2A 88.246 536 46 11 94 620 537424673 537424146 4.520000e-175 625.0
42 TraesCS3A01G382500 chr2A 95.804 143 3 2 4246 4388 393515965 393516104 1.490000e-55 228.0
43 TraesCS3A01G382500 chr5D 84.483 638 74 22 1 622 337210304 337209676 1.640000e-169 606.0
44 TraesCS3A01G382500 chr5D 84.044 633 74 21 1 620 407771597 407772215 7.670000e-163 584.0
45 TraesCS3A01G382500 chr5D 87.924 472 43 10 158 621 302023349 302022884 1.300000e-150 544.0
46 TraesCS3A01G382500 chr5D 91.011 178 10 5 4247 4422 367513280 367513107 8.900000e-58 235.0
47 TraesCS3A01G382500 chr5D 81.132 212 26 10 3838 4041 367513834 367513629 1.980000e-34 158.0
48 TraesCS3A01G382500 chr2B 84.182 373 45 6 4544 4913 705356970 705356609 3.050000e-92 350.0
49 TraesCS3A01G382500 chr2D 84.000 325 37 10 4544 4865 584866807 584866495 1.120000e-76 298.0
50 TraesCS3A01G382500 chr5B 90.909 176 13 2 4247 4422 434908035 434907863 3.200000e-57 233.0
51 TraesCS3A01G382500 chr5B 81.132 212 26 10 3838 4041 434908589 434908384 1.980000e-34 158.0
52 TraesCS3A01G382500 chr6A 92.727 110 8 0 786 895 517669695 517669804 5.510000e-35 159.0
53 TraesCS3A01G382500 chr1A 91.150 113 10 0 782 894 578480369 578480257 2.560000e-33 154.0
54 TraesCS3A01G382500 chr4A 88.991 109 12 0 787 895 539752683 539752575 9.280000e-28 135.0
55 TraesCS3A01G382500 chr7A 92.105 76 6 0 713 788 28257534 28257459 2.020000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G382500 chr3A 632362876 632368190 5314 False 4789.500000 6589 100.0000 1 5315 2 chr3A.!!$F1 5314
1 TraesCS3A01G382500 chr3B 651605807 651610065 4258 False 2778.000000 3487 90.3855 952 5315 2 chr3B.!!$F1 4363
2 TraesCS3A01G382500 chr3D 488878591 488887061 8470 True 1742.000000 3190 92.8112 966 5309 5 chr3D.!!$R1 4343
3 TraesCS3A01G382500 chr4B 85361853 85364523 2670 False 1121.666667 1748 90.1420 2224 4864 3 chr4B.!!$F1 2640
4 TraesCS3A01G382500 chr4B 616958004 616958595 591 True 555.000000 555 83.9400 28 618 1 chr4B.!!$R1 590
5 TraesCS3A01G382500 chr5A 567761926 567762528 602 False 846.000000 846 92.0790 10 611 1 chr5A.!!$F1 601
6 TraesCS3A01G382500 chr6D 23104170 23105005 835 True 845.000000 845 84.9230 1213 2059 1 chr6D.!!$R1 846
7 TraesCS3A01G382500 chr4D 64370789 64371523 734 False 745.000000 745 85.0400 1304 2041 1 chr4D.!!$F1 737
8 TraesCS3A01G382500 chr4D 507882105 507883060 955 True 737.000000 737 80.8050 1217 2174 1 chr4D.!!$R1 957
9 TraesCS3A01G382500 chr7D 142047744 142048574 830 False 734.000000 734 82.6190 1222 2061 1 chr7D.!!$F1 839
10 TraesCS3A01G382500 chr7D 421170900 421171754 854 True 660.000000 660 80.8760 1213 2067 1 chr7D.!!$R1 854
11 TraesCS3A01G382500 chr1B 299947191 299948049 858 False 726.000000 726 82.1020 1210 2067 1 chr1B.!!$F6 857
12 TraesCS3A01G382500 chr1B 44615471 44616068 597 False 562.000000 562 84.0200 28 620 1 chr1B.!!$F1 592
13 TraesCS3A01G382500 chr1B 389977319 389977923 604 False 472.000000 472 81.2500 15 621 1 chr1B.!!$F7 606
14 TraesCS3A01G382500 chr7B 457782095 457782946 851 False 710.000000 710 81.7650 1210 2067 1 chr7B.!!$F2 857
15 TraesCS3A01G382500 chr6B 712560136 712560973 837 True 684.000000 684 81.6040 1213 2050 1 chr6B.!!$R1 837
16 TraesCS3A01G382500 chrUn 96699114 96701462 2348 False 387.000000 682 81.0470 2246 4455 3 chrUn.!!$F2 2209
17 TraesCS3A01G382500 chr1D 340531166 340531776 610 True 643.000000 643 85.7830 2 621 1 chr1D.!!$R1 619
18 TraesCS3A01G382500 chr2A 537424146 537424673 527 True 625.000000 625 88.2460 94 620 1 chr2A.!!$R1 526
19 TraesCS3A01G382500 chr5D 337209676 337210304 628 True 606.000000 606 84.4830 1 622 1 chr5D.!!$R2 621
20 TraesCS3A01G382500 chr5D 407771597 407772215 618 False 584.000000 584 84.0440 1 620 1 chr5D.!!$F1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
725 757 0.032815 TTGCGTGTTCGATCTGGTCA 59.967 50.0 0.00 0.0 39.71 4.02 F
731 763 0.179134 GTTCGATCTGGTCACGAGGG 60.179 60.0 0.00 0.0 37.36 4.30 F
977 1010 0.250513 AAGGTTCGGATCTGTGAGGC 59.749 55.0 0.42 0.0 0.00 4.70 F
1960 3508 0.344790 ATGGTGAGGATGGGAGAGGT 59.655 55.0 0.00 0.0 0.00 3.85 F
2748 4357 0.732880 AAGCACGACGATGAGGTTCG 60.733 55.0 0.00 0.0 44.56 3.95 F
3391 5028 0.865111 CGCAATCGAACTGGTTCACA 59.135 50.0 12.94 0.5 39.46 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1941 3489 0.344790 ACCTCTCCCATCCTCACCAT 59.655 55.000 0.00 0.00 0.00 3.55 R
2250 3827 0.739561 AAGGCTCGGTCGATGAGTAC 59.260 55.000 16.14 10.98 35.85 2.73 R
2748 4357 1.950973 GAGCGGGGTGGAGAGAGAAC 61.951 65.000 0.00 0.00 0.00 3.01 R
3275 4896 0.238289 AACCAGAAACGCATTCGCAG 59.762 50.000 0.00 0.00 43.15 5.18 R
3722 5437 1.338973 ACACACCTCGTCGTTACATGT 59.661 47.619 2.69 2.69 0.00 3.21 R
4936 9595 0.035739 GGCTGTTAACCCGTCTTCCA 59.964 55.000 2.48 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.932663 GTGGCTGCTGTGCTCTTTA 58.067 52.632 0.00 0.00 0.00 1.85
167 176 7.306866 CGGTGAAAACTTTGTTCTTTTGTTTGA 60.307 33.333 0.00 0.00 32.20 2.69
239 250 7.860872 GCTTTGAATTCTTTCTACCGAAAAAGA 59.139 33.333 7.05 0.00 38.58 2.52
298 321 5.279506 GCTTTGGATCGGATAGGTTAGATCA 60.280 44.000 0.00 0.00 40.74 2.92
299 322 6.575254 GCTTTGGATCGGATAGGTTAGATCAT 60.575 42.308 0.00 0.00 40.74 2.45
307 330 5.392811 CGGATAGGTTAGATCATTCCGGTAC 60.393 48.000 0.00 0.00 40.60 3.34
410 442 4.069232 TGGAGCTTCCCGTGAGCG 62.069 66.667 0.00 0.00 44.71 5.03
429 461 0.666913 GTCGCGCTAACCCTAGATCA 59.333 55.000 5.56 0.00 0.00 2.92
445 477 2.025226 AGATCAGAAGGGAGTGTCGGTA 60.025 50.000 0.00 0.00 0.00 4.02
452 484 1.572415 AGGGAGTGTCGGTAGGGATTA 59.428 52.381 0.00 0.00 0.00 1.75
607 639 1.784358 TGGGTTCGAACGGGATAGAT 58.216 50.000 21.34 0.00 0.00 1.98
622 654 5.624738 CGGGATAGATATCAACCTAACAGCC 60.625 48.000 5.32 0.00 34.40 4.85
623 655 5.411781 GGATAGATATCAACCTAACAGCCG 58.588 45.833 5.32 0.00 34.40 5.52
624 656 3.113260 AGATATCAACCTAACAGCCGC 57.887 47.619 5.32 0.00 0.00 6.53
625 657 2.143925 GATATCAACCTAACAGCCGCC 58.856 52.381 0.00 0.00 0.00 6.13
626 658 1.200519 TATCAACCTAACAGCCGCCT 58.799 50.000 0.00 0.00 0.00 5.52
627 659 0.107654 ATCAACCTAACAGCCGCCTC 60.108 55.000 0.00 0.00 0.00 4.70
628 660 1.003839 CAACCTAACAGCCGCCTCA 60.004 57.895 0.00 0.00 0.00 3.86
629 661 0.392998 CAACCTAACAGCCGCCTCAT 60.393 55.000 0.00 0.00 0.00 2.90
630 662 0.107654 AACCTAACAGCCGCCTCATC 60.108 55.000 0.00 0.00 0.00 2.92
631 663 1.264749 ACCTAACAGCCGCCTCATCA 61.265 55.000 0.00 0.00 0.00 3.07
632 664 0.531532 CCTAACAGCCGCCTCATCAG 60.532 60.000 0.00 0.00 0.00 2.90
633 665 0.461548 CTAACAGCCGCCTCATCAGA 59.538 55.000 0.00 0.00 0.00 3.27
634 666 0.175760 TAACAGCCGCCTCATCAGAC 59.824 55.000 0.00 0.00 0.00 3.51
635 667 2.584418 CAGCCGCCTCATCAGACG 60.584 66.667 0.00 0.00 0.00 4.18
636 668 2.755876 AGCCGCCTCATCAGACGA 60.756 61.111 0.00 0.00 0.00 4.20
637 669 2.279120 GCCGCCTCATCAGACGAG 60.279 66.667 0.00 0.00 0.00 4.18
638 670 2.279120 CCGCCTCATCAGACGAGC 60.279 66.667 0.00 0.00 0.00 5.03
639 671 2.491621 CGCCTCATCAGACGAGCA 59.508 61.111 0.00 0.00 0.00 4.26
640 672 1.588403 CGCCTCATCAGACGAGCAG 60.588 63.158 0.00 0.00 0.00 4.24
641 673 1.812525 GCCTCATCAGACGAGCAGA 59.187 57.895 0.00 0.00 0.00 4.26
642 674 0.388659 GCCTCATCAGACGAGCAGAT 59.611 55.000 0.00 0.00 0.00 2.90
643 675 1.868930 GCCTCATCAGACGAGCAGATG 60.869 57.143 0.00 0.00 40.69 2.90
644 676 1.269673 CCTCATCAGACGAGCAGATGG 60.270 57.143 12.53 6.39 40.00 3.51
645 677 1.680207 CTCATCAGACGAGCAGATGGA 59.320 52.381 12.53 0.00 40.00 3.41
646 678 1.406898 TCATCAGACGAGCAGATGGAC 59.593 52.381 12.53 0.00 40.00 4.02
647 679 0.383590 ATCAGACGAGCAGATGGACG 59.616 55.000 0.00 0.00 0.00 4.79
648 680 1.226802 CAGACGAGCAGATGGACGG 60.227 63.158 0.00 0.00 0.00 4.79
649 681 2.105128 GACGAGCAGATGGACGGG 59.895 66.667 0.00 0.00 0.00 5.28
650 682 3.432051 GACGAGCAGATGGACGGGG 62.432 68.421 0.00 0.00 0.00 5.73
651 683 3.461773 CGAGCAGATGGACGGGGT 61.462 66.667 0.00 0.00 0.00 4.95
652 684 2.187946 GAGCAGATGGACGGGGTG 59.812 66.667 0.00 0.00 0.00 4.61
653 685 3.391665 GAGCAGATGGACGGGGTGG 62.392 68.421 0.00 0.00 0.00 4.61
655 687 3.402681 CAGATGGACGGGGTGGCT 61.403 66.667 0.00 0.00 0.00 4.75
656 688 3.402681 AGATGGACGGGGTGGCTG 61.403 66.667 0.00 0.00 0.00 4.85
657 689 3.399181 GATGGACGGGGTGGCTGA 61.399 66.667 0.00 0.00 0.00 4.26
658 690 3.391665 GATGGACGGGGTGGCTGAG 62.392 68.421 0.00 0.00 0.00 3.35
685 717 4.459089 GCGGGCGGCTTCTTCTCT 62.459 66.667 9.56 0.00 39.11 3.10
686 718 2.202810 CGGGCGGCTTCTTCTCTC 60.203 66.667 9.56 0.00 0.00 3.20
687 719 2.188207 GGGCGGCTTCTTCTCTCC 59.812 66.667 9.56 0.00 0.00 3.71
688 720 2.363172 GGGCGGCTTCTTCTCTCCT 61.363 63.158 9.56 0.00 0.00 3.69
689 721 1.153469 GGCGGCTTCTTCTCTCCTG 60.153 63.158 0.00 0.00 0.00 3.86
690 722 1.813337 GCGGCTTCTTCTCTCCTGC 60.813 63.158 0.00 0.00 0.00 4.85
691 723 1.896694 CGGCTTCTTCTCTCCTGCT 59.103 57.895 0.00 0.00 0.00 4.24
692 724 0.179113 CGGCTTCTTCTCTCCTGCTC 60.179 60.000 0.00 0.00 0.00 4.26
693 725 0.179113 GGCTTCTTCTCTCCTGCTCG 60.179 60.000 0.00 0.00 0.00 5.03
694 726 0.814457 GCTTCTTCTCTCCTGCTCGA 59.186 55.000 0.00 0.00 0.00 4.04
695 727 1.203523 GCTTCTTCTCTCCTGCTCGAA 59.796 52.381 0.00 0.00 0.00 3.71
696 728 2.159114 GCTTCTTCTCTCCTGCTCGAAT 60.159 50.000 0.00 0.00 0.00 3.34
697 729 3.446799 CTTCTTCTCTCCTGCTCGAATG 58.553 50.000 0.00 0.00 0.00 2.67
698 730 1.753649 TCTTCTCTCCTGCTCGAATGG 59.246 52.381 0.00 0.00 0.00 3.16
699 731 0.826715 TTCTCTCCTGCTCGAATGGG 59.173 55.000 0.00 0.00 0.00 4.00
700 732 0.033109 TCTCTCCTGCTCGAATGGGA 60.033 55.000 0.00 0.00 0.00 4.37
701 733 0.388659 CTCTCCTGCTCGAATGGGAG 59.611 60.000 16.45 16.45 44.69 4.30
708 740 2.772739 CTCGAATGGGAGCTGGTTG 58.227 57.895 0.00 0.00 0.00 3.77
709 741 1.372087 CTCGAATGGGAGCTGGTTGC 61.372 60.000 0.00 0.00 43.29 4.17
718 750 3.253955 GCTGGTTGCGTGTTCGAT 58.746 55.556 0.00 0.00 39.71 3.59
719 751 1.132640 GCTGGTTGCGTGTTCGATC 59.867 57.895 0.00 0.00 39.71 3.69
720 752 1.291877 GCTGGTTGCGTGTTCGATCT 61.292 55.000 0.00 0.00 39.71 2.75
721 753 0.439985 CTGGTTGCGTGTTCGATCTG 59.560 55.000 0.00 0.00 39.71 2.90
722 754 0.948623 TGGTTGCGTGTTCGATCTGG 60.949 55.000 0.00 0.00 39.71 3.86
723 755 0.949105 GGTTGCGTGTTCGATCTGGT 60.949 55.000 0.00 0.00 39.71 4.00
724 756 0.438830 GTTGCGTGTTCGATCTGGTC 59.561 55.000 0.00 0.00 39.71 4.02
725 757 0.032815 TTGCGTGTTCGATCTGGTCA 59.967 50.000 0.00 0.00 39.71 4.02
726 758 0.666274 TGCGTGTTCGATCTGGTCAC 60.666 55.000 0.00 0.00 39.71 3.67
727 759 2.349843 CGTGTTCGATCTGGTCACG 58.650 57.895 12.34 12.34 43.77 4.35
728 760 3.786809 GTGTTCGATCTGGTCACGA 57.213 52.632 0.00 0.00 0.00 4.35
729 761 1.618861 GTGTTCGATCTGGTCACGAG 58.381 55.000 0.00 0.00 37.36 4.18
730 762 0.526211 TGTTCGATCTGGTCACGAGG 59.474 55.000 0.00 0.00 37.36 4.63
731 763 0.179134 GTTCGATCTGGTCACGAGGG 60.179 60.000 0.00 0.00 37.36 4.30
732 764 1.320344 TTCGATCTGGTCACGAGGGG 61.320 60.000 0.00 0.00 37.36 4.79
733 765 2.786495 CGATCTGGTCACGAGGGGG 61.786 68.421 0.00 0.00 0.00 5.40
734 766 3.083997 ATCTGGTCACGAGGGGGC 61.084 66.667 0.00 0.00 0.00 5.80
738 770 4.410400 GGTCACGAGGGGGCCAAG 62.410 72.222 4.39 0.00 0.00 3.61
739 771 3.637273 GTCACGAGGGGGCCAAGT 61.637 66.667 4.39 0.00 0.00 3.16
740 772 3.636231 TCACGAGGGGGCCAAGTG 61.636 66.667 4.39 9.65 35.57 3.16
741 773 3.953775 CACGAGGGGGCCAAGTGT 61.954 66.667 4.39 0.00 31.83 3.55
742 774 3.175710 ACGAGGGGGCCAAGTGTT 61.176 61.111 4.39 0.00 0.00 3.32
743 775 2.672996 CGAGGGGGCCAAGTGTTG 60.673 66.667 4.39 0.00 0.00 3.33
772 804 4.237207 GCCTACGCCCCTAGCCAC 62.237 72.222 0.00 0.00 38.78 5.01
773 805 2.444140 CCTACGCCCCTAGCCACT 60.444 66.667 0.00 0.00 38.78 4.00
774 806 2.064581 CCTACGCCCCTAGCCACTT 61.065 63.158 0.00 0.00 38.78 3.16
775 807 1.442148 CTACGCCCCTAGCCACTTC 59.558 63.158 0.00 0.00 38.78 3.01
776 808 1.001248 TACGCCCCTAGCCACTTCT 59.999 57.895 0.00 0.00 38.78 2.85
777 809 1.327690 TACGCCCCTAGCCACTTCTG 61.328 60.000 0.00 0.00 38.78 3.02
778 810 2.359169 CGCCCCTAGCCACTTCTGA 61.359 63.158 0.00 0.00 38.78 3.27
779 811 1.899437 CGCCCCTAGCCACTTCTGAA 61.899 60.000 0.00 0.00 38.78 3.02
780 812 0.328258 GCCCCTAGCCACTTCTGAAA 59.672 55.000 0.00 0.00 34.35 2.69
781 813 1.064389 GCCCCTAGCCACTTCTGAAAT 60.064 52.381 0.00 0.00 34.35 2.17
782 814 2.621668 GCCCCTAGCCACTTCTGAAATT 60.622 50.000 0.00 0.00 34.35 1.82
783 815 3.701664 CCCCTAGCCACTTCTGAAATTT 58.298 45.455 0.00 0.00 0.00 1.82
784 816 4.089361 CCCCTAGCCACTTCTGAAATTTT 58.911 43.478 0.00 0.00 0.00 1.82
785 817 4.158579 CCCCTAGCCACTTCTGAAATTTTC 59.841 45.833 2.05 2.05 0.00 2.29
786 818 5.012893 CCCTAGCCACTTCTGAAATTTTCT 58.987 41.667 10.33 0.00 0.00 2.52
787 819 6.180472 CCCTAGCCACTTCTGAAATTTTCTA 58.820 40.000 10.33 0.00 0.00 2.10
788 820 6.094186 CCCTAGCCACTTCTGAAATTTTCTAC 59.906 42.308 10.33 0.00 0.00 2.59
789 821 6.881602 CCTAGCCACTTCTGAAATTTTCTACT 59.118 38.462 10.33 0.35 0.00 2.57
790 822 6.809630 AGCCACTTCTGAAATTTTCTACTC 57.190 37.500 10.33 0.00 0.00 2.59
791 823 6.538263 AGCCACTTCTGAAATTTTCTACTCT 58.462 36.000 10.33 0.00 0.00 3.24
792 824 6.652900 AGCCACTTCTGAAATTTTCTACTCTC 59.347 38.462 10.33 0.00 0.00 3.20
793 825 6.652900 GCCACTTCTGAAATTTTCTACTCTCT 59.347 38.462 10.33 0.00 0.00 3.10
794 826 7.148490 GCCACTTCTGAAATTTTCTACTCTCTC 60.148 40.741 10.33 0.00 0.00 3.20
795 827 8.093927 CCACTTCTGAAATTTTCTACTCTCTCT 58.906 37.037 10.33 0.00 0.00 3.10
813 845 9.482627 ACTCTCTCTATTCATTTTTATAAGGCG 57.517 33.333 0.00 0.00 0.00 5.52
814 846 8.311650 TCTCTCTATTCATTTTTATAAGGCGC 57.688 34.615 0.00 0.00 0.00 6.53
815 847 8.150945 TCTCTCTATTCATTTTTATAAGGCGCT 58.849 33.333 7.64 0.00 0.00 5.92
816 848 8.311650 TCTCTATTCATTTTTATAAGGCGCTC 57.688 34.615 7.64 0.00 0.00 5.03
817 849 8.150945 TCTCTATTCATTTTTATAAGGCGCTCT 58.849 33.333 7.64 0.00 0.00 4.09
818 850 9.424319 CTCTATTCATTTTTATAAGGCGCTCTA 57.576 33.333 7.64 0.00 0.00 2.43
819 851 9.424319 TCTATTCATTTTTATAAGGCGCTCTAG 57.576 33.333 7.64 0.00 0.00 2.43
820 852 9.424319 CTATTCATTTTTATAAGGCGCTCTAGA 57.576 33.333 7.64 0.00 0.00 2.43
821 853 7.478520 TTCATTTTTATAAGGCGCTCTAGAC 57.521 36.000 7.64 0.00 0.00 2.59
822 854 6.578944 TCATTTTTATAAGGCGCTCTAGACA 58.421 36.000 7.64 0.00 0.00 3.41
823 855 7.217200 TCATTTTTATAAGGCGCTCTAGACAT 58.783 34.615 7.64 0.00 0.00 3.06
824 856 7.715249 TCATTTTTATAAGGCGCTCTAGACATT 59.285 33.333 7.64 0.00 0.00 2.71
825 857 7.859325 TTTTTATAAGGCGCTCTAGACATTT 57.141 32.000 7.64 0.00 0.00 2.32
826 858 7.859325 TTTTATAAGGCGCTCTAGACATTTT 57.141 32.000 7.64 0.00 0.00 1.82
827 859 8.951787 TTTTATAAGGCGCTCTAGACATTTTA 57.048 30.769 7.64 0.00 0.00 1.52
828 860 8.589335 TTTATAAGGCGCTCTAGACATTTTAG 57.411 34.615 7.64 0.00 0.00 1.85
829 861 4.737855 AAGGCGCTCTAGACATTTTAGA 57.262 40.909 7.64 0.00 0.00 2.10
830 862 4.048241 AGGCGCTCTAGACATTTTAGAC 57.952 45.455 7.64 0.00 0.00 2.59
831 863 3.447586 AGGCGCTCTAGACATTTTAGACA 59.552 43.478 7.64 0.00 0.00 3.41
832 864 3.799420 GGCGCTCTAGACATTTTAGACAG 59.201 47.826 7.64 0.00 0.00 3.51
833 865 3.244111 GCGCTCTAGACATTTTAGACAGC 59.756 47.826 0.00 0.00 0.00 4.40
834 866 4.677584 CGCTCTAGACATTTTAGACAGCT 58.322 43.478 0.00 0.00 0.00 4.24
835 867 5.105752 CGCTCTAGACATTTTAGACAGCTT 58.894 41.667 0.00 0.00 0.00 3.74
836 868 5.005203 CGCTCTAGACATTTTAGACAGCTTG 59.995 44.000 0.00 0.00 0.00 4.01
837 869 5.872070 GCTCTAGACATTTTAGACAGCTTGT 59.128 40.000 0.00 0.00 0.00 3.16
838 870 7.036220 GCTCTAGACATTTTAGACAGCTTGTA 58.964 38.462 0.00 0.00 0.00 2.41
839 871 7.545965 GCTCTAGACATTTTAGACAGCTTGTAA 59.454 37.037 0.00 0.00 0.00 2.41
840 872 9.424319 CTCTAGACATTTTAGACAGCTTGTAAA 57.576 33.333 0.00 0.00 0.00 2.01
841 873 9.772973 TCTAGACATTTTAGACAGCTTGTAAAA 57.227 29.630 10.88 10.88 0.00 1.52
842 874 9.813080 CTAGACATTTTAGACAGCTTGTAAAAC 57.187 33.333 10.77 3.30 0.00 2.43
843 875 8.220755 AGACATTTTAGACAGCTTGTAAAACA 57.779 30.769 10.77 0.00 0.00 2.83
844 876 8.345565 AGACATTTTAGACAGCTTGTAAAACAG 58.654 33.333 10.77 9.70 0.00 3.16
845 877 6.918022 ACATTTTAGACAGCTTGTAAAACAGC 59.082 34.615 10.77 0.00 0.00 4.40
846 878 6.693315 TTTTAGACAGCTTGTAAAACAGCT 57.307 33.333 0.00 0.00 34.52 4.24
847 879 5.924475 TTAGACAGCTTGTAAAACAGCTC 57.076 39.130 0.00 0.00 32.84 4.09
848 880 3.808728 AGACAGCTTGTAAAACAGCTCA 58.191 40.909 0.00 0.00 32.84 4.26
849 881 4.392940 AGACAGCTTGTAAAACAGCTCAT 58.607 39.130 0.00 0.00 32.84 2.90
850 882 4.823989 AGACAGCTTGTAAAACAGCTCATT 59.176 37.500 0.00 0.00 32.84 2.57
851 883 5.300286 AGACAGCTTGTAAAACAGCTCATTT 59.700 36.000 0.00 0.00 32.84 2.32
852 884 5.906073 ACAGCTTGTAAAACAGCTCATTTT 58.094 33.333 9.56 9.56 32.84 1.82
853 885 5.979517 ACAGCTTGTAAAACAGCTCATTTTC 59.020 36.000 8.21 0.70 32.84 2.29
854 886 5.978919 CAGCTTGTAAAACAGCTCATTTTCA 59.021 36.000 8.21 3.02 32.84 2.69
855 887 6.143438 CAGCTTGTAAAACAGCTCATTTTCAG 59.857 38.462 8.21 5.70 32.84 3.02
856 888 5.979517 GCTTGTAAAACAGCTCATTTTCAGT 59.020 36.000 8.21 0.00 31.79 3.41
857 889 6.476706 GCTTGTAAAACAGCTCATTTTCAGTT 59.523 34.615 8.21 0.00 31.79 3.16
858 890 7.515684 GCTTGTAAAACAGCTCATTTTCAGTTG 60.516 37.037 8.21 2.55 31.79 3.16
859 891 6.862209 TGTAAAACAGCTCATTTTCAGTTGT 58.138 32.000 8.21 0.00 36.94 3.32
860 892 6.972328 TGTAAAACAGCTCATTTTCAGTTGTC 59.028 34.615 8.21 0.00 34.53 3.18
861 893 5.841957 AAACAGCTCATTTTCAGTTGTCT 57.158 34.783 0.00 0.00 34.53 3.41
862 894 4.825546 ACAGCTCATTTTCAGTTGTCTG 57.174 40.909 0.00 0.00 42.54 3.51
881 913 9.872757 GTTGTCTGAAACGACTTATAAAAATGA 57.127 29.630 0.00 0.00 38.97 2.57
883 915 9.872757 TGTCTGAAACGACTTATAAAAATGAAC 57.127 29.630 0.00 0.00 35.00 3.18
884 916 9.872757 GTCTGAAACGACTTATAAAAATGAACA 57.127 29.630 0.00 0.00 0.00 3.18
888 920 9.543018 GAAACGACTTATAAAAATGAACAGAGG 57.457 33.333 0.00 0.00 0.00 3.69
889 921 7.611213 ACGACTTATAAAAATGAACAGAGGG 57.389 36.000 0.00 0.00 0.00 4.30
890 922 7.391620 ACGACTTATAAAAATGAACAGAGGGA 58.608 34.615 0.00 0.00 0.00 4.20
891 923 7.549488 ACGACTTATAAAAATGAACAGAGGGAG 59.451 37.037 0.00 0.00 0.00 4.30
892 924 7.549488 CGACTTATAAAAATGAACAGAGGGAGT 59.451 37.037 0.00 0.00 0.00 3.85
893 925 9.886132 GACTTATAAAAATGAACAGAGGGAGTA 57.114 33.333 0.00 0.00 0.00 2.59
894 926 9.892130 ACTTATAAAAATGAACAGAGGGAGTAG 57.108 33.333 0.00 0.00 0.00 2.57
895 927 8.732746 TTATAAAAATGAACAGAGGGAGTAGC 57.267 34.615 0.00 0.00 0.00 3.58
896 928 4.640771 AAAATGAACAGAGGGAGTAGCA 57.359 40.909 0.00 0.00 0.00 3.49
897 929 4.851639 AAATGAACAGAGGGAGTAGCAT 57.148 40.909 0.00 0.00 0.00 3.79
898 930 5.957771 AAATGAACAGAGGGAGTAGCATA 57.042 39.130 0.00 0.00 0.00 3.14
899 931 6.506538 AAATGAACAGAGGGAGTAGCATAT 57.493 37.500 0.00 0.00 0.00 1.78
900 932 7.618019 AAATGAACAGAGGGAGTAGCATATA 57.382 36.000 0.00 0.00 0.00 0.86
901 933 6.849085 ATGAACAGAGGGAGTAGCATATAG 57.151 41.667 0.00 0.00 0.00 1.31
902 934 5.080337 TGAACAGAGGGAGTAGCATATAGG 58.920 45.833 0.00 0.00 0.00 2.57
903 935 3.436243 ACAGAGGGAGTAGCATATAGGC 58.564 50.000 0.00 0.00 0.00 3.93
905 937 4.093011 CAGAGGGAGTAGCATATAGGCTT 58.907 47.826 18.18 0.00 42.71 4.35
906 938 5.222358 ACAGAGGGAGTAGCATATAGGCTTA 60.222 44.000 18.18 0.96 42.71 3.09
907 939 5.717178 CAGAGGGAGTAGCATATAGGCTTAA 59.283 44.000 18.18 0.00 42.71 1.85
908 940 6.382570 CAGAGGGAGTAGCATATAGGCTTAAT 59.617 42.308 18.18 3.81 42.71 1.40
909 941 6.962902 AGAGGGAGTAGCATATAGGCTTAATT 59.037 38.462 18.18 0.00 42.71 1.40
910 942 7.459444 AGAGGGAGTAGCATATAGGCTTAATTT 59.541 37.037 18.18 0.00 42.71 1.82
911 943 7.990055 AGGGAGTAGCATATAGGCTTAATTTT 58.010 34.615 18.18 0.00 42.71 1.82
912 944 8.448816 AGGGAGTAGCATATAGGCTTAATTTTT 58.551 33.333 18.18 0.00 42.71 1.94
928 960 2.604152 TTTTTCCCACGCCCTGGT 59.396 55.556 0.00 0.00 38.60 4.00
929 961 1.844839 TTTTTCCCACGCCCTGGTA 59.155 52.632 0.00 0.00 38.60 3.25
930 962 0.250989 TTTTTCCCACGCCCTGGTAG 60.251 55.000 0.00 0.00 38.60 3.18
931 963 2.757980 TTTTCCCACGCCCTGGTAGC 62.758 60.000 0.00 0.00 38.60 3.58
934 966 4.473520 CCACGCCCTGGTAGCCTG 62.474 72.222 0.00 0.00 34.90 4.85
935 967 4.473520 CACGCCCTGGTAGCCTGG 62.474 72.222 4.35 4.35 41.51 4.45
977 1010 0.250513 AAGGTTCGGATCTGTGAGGC 59.749 55.000 0.42 0.00 0.00 4.70
1050 1083 0.387202 AGATGAGATCCGTTGAGCCG 59.613 55.000 0.00 0.00 0.00 5.52
1114 1147 7.235079 TGGTCCTTAATCATTTCCTGTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
1329 2829 1.112315 TCAAATGCGGTGGTGCCTTT 61.112 50.000 0.00 0.00 33.76 3.11
1375 2876 7.386025 GTCGGATCTTCATTGTCATTGATCATA 59.614 37.037 0.00 0.00 33.93 2.15
1393 2894 3.068165 TCATATTCGACATGAACGCCTCT 59.932 43.478 0.00 0.00 40.00 3.69
1643 3148 1.461091 CGGAATAGCCTAGCCGACCA 61.461 60.000 9.51 0.00 46.29 4.02
1645 3150 1.348036 GGAATAGCCTAGCCGACCATT 59.652 52.381 0.00 0.00 0.00 3.16
1761 3303 0.969149 TGCTCGACCATGTCTGAACT 59.031 50.000 0.00 0.00 0.00 3.01
1767 3309 2.704572 GACCATGTCTGAACTTCCCTG 58.295 52.381 0.00 0.00 0.00 4.45
1768 3310 1.271597 ACCATGTCTGAACTTCCCTGC 60.272 52.381 0.00 0.00 0.00 4.85
1769 3311 1.081892 CATGTCTGAACTTCCCTGCG 58.918 55.000 0.00 0.00 0.00 5.18
1770 3312 0.674895 ATGTCTGAACTTCCCTGCGC 60.675 55.000 0.00 0.00 0.00 6.09
1772 3314 3.121030 CTGAACTTCCCTGCGCCG 61.121 66.667 4.18 0.00 0.00 6.46
1851 3393 4.742201 TGCAAGACGGAGCCGAGC 62.742 66.667 16.83 13.36 42.83 5.03
1860 3405 3.760035 GAGCCGAGCAAGGGACGA 61.760 66.667 0.00 0.00 0.00 4.20
1862 3407 4.070552 GCCGAGCAAGGGACGACT 62.071 66.667 0.00 0.00 0.00 4.18
1957 3505 1.216064 CCAATGGTGAGGATGGGAGA 58.784 55.000 0.00 0.00 0.00 3.71
1960 3508 0.344790 ATGGTGAGGATGGGAGAGGT 59.655 55.000 0.00 0.00 0.00 3.85
1976 3524 3.771160 GTGAGGGTGGCGGACGAT 61.771 66.667 0.00 0.00 0.00 3.73
1980 3528 3.458163 GGGTGGCGGACGATGAGA 61.458 66.667 0.00 0.00 0.00 3.27
2018 3566 3.090532 GAAGGGTGGCGGGAGGAT 61.091 66.667 0.00 0.00 0.00 3.24
2032 3580 2.850568 GGGAGGATGAGGAAGGGTTTAA 59.149 50.000 0.00 0.00 0.00 1.52
2044 3593 7.898636 TGAGGAAGGGTTTAATGAATTTGGTAT 59.101 33.333 0.00 0.00 0.00 2.73
2062 3611 2.596553 ATAATTTGCGGCGGGGTCGA 62.597 55.000 9.78 0.00 39.00 4.20
2073 3622 2.202987 GGGTCGAGCTGCCTCATG 60.203 66.667 15.18 0.00 38.00 3.07
2075 3624 2.894387 GTCGAGCTGCCTCATGCC 60.894 66.667 0.00 0.00 40.16 4.40
2076 3625 4.166888 TCGAGCTGCCTCATGCCC 62.167 66.667 0.00 0.00 40.16 5.36
2103 3679 2.586425 CTCATGTCCGCCCCATATTTT 58.414 47.619 0.00 0.00 0.00 1.82
2114 3690 5.013547 CGCCCCATATTTTGGTTGGATATA 58.986 41.667 0.00 0.00 44.83 0.86
2120 3696 7.245292 CCATATTTTGGTTGGATATAAGGGGA 58.755 38.462 0.00 0.00 40.99 4.81
2122 3698 6.606241 ATTTTGGTTGGATATAAGGGGAGA 57.394 37.500 0.00 0.00 0.00 3.71
2124 3700 4.015617 TGGTTGGATATAAGGGGAGACA 57.984 45.455 0.00 0.00 0.00 3.41
2127 3703 5.152934 GGTTGGATATAAGGGGAGACAGTA 58.847 45.833 0.00 0.00 0.00 2.74
2129 3705 6.100714 GGTTGGATATAAGGGGAGACAGTAAA 59.899 42.308 0.00 0.00 0.00 2.01
2146 3722 2.640581 AAACCTGGGCGTTTGAGGCT 62.641 55.000 0.00 0.00 34.68 4.58
2167 3743 4.440250 GCTCATTTAAGGCGTCTGTCTAGA 60.440 45.833 0.00 0.00 0.00 2.43
2208 3784 1.134670 AGAGTATGAGGCGGCTTTGAC 60.135 52.381 14.76 11.33 0.00 3.18
2220 3796 1.956620 GCTTTGACGCGCCTGTAGAC 61.957 60.000 5.73 0.00 0.00 2.59
2231 3808 2.733517 GCCTGTAGACGCTCTAACATC 58.266 52.381 0.00 0.00 29.58 3.06
2244 3821 7.489160 ACGCTCTAACATCTAACATACAATCA 58.511 34.615 0.00 0.00 0.00 2.57
2295 3873 1.005450 TGCAGGGTTCCCAATCCTTAC 59.995 52.381 10.73 0.00 0.00 2.34
2418 3996 3.692406 GGTCGGCCGTTCCAGAGT 61.692 66.667 27.15 0.00 34.01 3.24
2459 4037 3.149981 CTCTCCATACCTATGCTCGTGA 58.850 50.000 0.00 0.00 32.40 4.35
2494 4094 4.021894 ACACGTAATGTTCTGAGCTCTCTT 60.022 41.667 16.19 2.27 38.98 2.85
2496 4096 5.061560 CACGTAATGTTCTGAGCTCTCTTTC 59.938 44.000 16.19 2.71 0.00 2.62
2498 4100 5.866633 CGTAATGTTCTGAGCTCTCTTTCTT 59.133 40.000 16.19 4.99 0.00 2.52
2503 4105 5.235186 TGTTCTGAGCTCTCTTTCTTTTTCG 59.765 40.000 16.19 0.00 0.00 3.46
2508 4110 4.384940 AGCTCTCTTTCTTTTTCGCTCTT 58.615 39.130 0.00 0.00 0.00 2.85
2509 4111 5.542779 AGCTCTCTTTCTTTTTCGCTCTTA 58.457 37.500 0.00 0.00 0.00 2.10
2510 4112 5.992217 AGCTCTCTTTCTTTTTCGCTCTTAA 59.008 36.000 0.00 0.00 0.00 1.85
2748 4357 0.732880 AAGCACGACGATGAGGTTCG 60.733 55.000 0.00 0.00 44.56 3.95
2760 4369 1.887198 TGAGGTTCGTTCTCTCTCCAC 59.113 52.381 0.00 0.00 32.78 4.02
2796 4409 3.012502 ACTCAGTCCCACTACCAGGATTA 59.987 47.826 0.00 0.00 33.88 1.75
2812 4427 6.262273 ACCAGGATTACCGTATTTTATTGCTG 59.738 38.462 0.00 0.00 41.83 4.41
3018 4633 2.802247 CGCTGAAGTCACACTTGATCAA 59.198 45.455 8.12 8.12 38.80 2.57
3157 4776 8.893727 GCTGTTAGATATAGGTCAAAACATTGT 58.106 33.333 0.00 0.00 30.78 2.71
3330 4967 6.266558 TGTTACTATTGACTGTTTGCCCATTT 59.733 34.615 0.00 0.00 0.00 2.32
3331 4968 5.806654 ACTATTGACTGTTTGCCCATTTT 57.193 34.783 0.00 0.00 0.00 1.82
3391 5028 0.865111 CGCAATCGAACTGGTTCACA 59.135 50.000 12.94 0.50 39.46 3.58
3396 5033 2.388310 TCGAACTGGTTCACACACAA 57.612 45.000 12.94 0.00 39.46 3.33
3454 5091 6.683974 TCTTTTGCCACTTATTCAGCTATC 57.316 37.500 0.00 0.00 0.00 2.08
3722 5437 6.268617 CACTGATCTCTCCCTTGGTTATGATA 59.731 42.308 0.00 0.00 0.00 2.15
3733 5448 6.202188 CCCTTGGTTATGATACATGTAACGAC 59.798 42.308 10.14 7.46 30.91 4.34
3770 5485 3.014623 GCCCAGAACAAGGTATGGTAAC 58.985 50.000 0.00 0.00 0.00 2.50
3824 5630 2.361757 TGTTGGTCCATCTTTTGCAGTG 59.638 45.455 0.00 0.00 0.00 3.66
3917 5726 6.074648 AGAAGAAGAACTGAGAGAAGAGGAA 58.925 40.000 0.00 0.00 0.00 3.36
3927 5736 6.607198 ACTGAGAGAAGAGGAAGAAAGGATAG 59.393 42.308 0.00 0.00 0.00 2.08
3935 5744 5.043732 AGAGGAAGAAAGGATAGGAGAGTCA 60.044 44.000 0.00 0.00 0.00 3.41
4143 5966 6.434028 TCCCAATCTCCTTCAATTTGTTAGTG 59.566 38.462 0.00 0.00 0.00 2.74
4147 5972 5.070001 TCTCCTTCAATTTGTTAGTGGGTG 58.930 41.667 0.00 0.00 0.00 4.61
4158 5983 8.644374 ATTTGTTAGTGGGTGTATGTTTGTAT 57.356 30.769 0.00 0.00 0.00 2.29
4175 6000 5.752892 TTGTATAGTTTTTGTGCGGTTCA 57.247 34.783 0.00 0.00 0.00 3.18
4188 6125 1.003223 GCGGTTCACTGGTGTTTGTAC 60.003 52.381 0.53 0.00 0.00 2.90
4210 6147 8.598916 TGTACCTCCTAAAACTTGATGATTGTA 58.401 33.333 0.00 0.00 0.00 2.41
4211 6148 9.614792 GTACCTCCTAAAACTTGATGATTGTAT 57.385 33.333 0.00 0.00 0.00 2.29
4212 6149 8.738645 ACCTCCTAAAACTTGATGATTGTATC 57.261 34.615 0.00 0.00 0.00 2.24
4213 6150 8.552296 ACCTCCTAAAACTTGATGATTGTATCT 58.448 33.333 0.00 0.00 0.00 1.98
4214 6151 9.050601 CCTCCTAAAACTTGATGATTGTATCTC 57.949 37.037 0.00 0.00 0.00 2.75
4215 6152 8.964476 TCCTAAAACTTGATGATTGTATCTCC 57.036 34.615 0.00 0.00 0.00 3.71
4216 6153 8.772250 TCCTAAAACTTGATGATTGTATCTCCT 58.228 33.333 0.00 0.00 0.00 3.69
4398 6348 2.300433 AGTGTTGCTGCTGTGATTTCA 58.700 42.857 0.00 0.00 0.00 2.69
4413 6363 4.748102 GTGATTTCAGAACGTGAACCACTA 59.252 41.667 0.00 0.00 45.23 2.74
4464 6414 5.965033 ACAGGACTGGAATAGAACATCAT 57.035 39.130 4.14 0.00 34.19 2.45
4468 6418 5.192522 AGGACTGGAATAGAACATCATGGTT 59.807 40.000 0.00 0.00 0.00 3.67
4540 6508 3.529634 TGCGTCAACTAATTTGGAACG 57.470 42.857 6.60 6.60 38.08 3.95
4595 6563 1.270550 AGCCAAGCCTTTGAAATGTCG 59.729 47.619 0.00 0.00 36.36 4.35
4614 9265 2.901192 TCGGTATGTCAGTCTTTCCCAA 59.099 45.455 0.00 0.00 0.00 4.12
4633 9292 6.138967 TCCCAATTCTCTATCTCTGATGTCA 58.861 40.000 0.00 0.00 0.00 3.58
4663 9322 1.346395 ACTGCCCGTGTATGAAAGTGA 59.654 47.619 0.00 0.00 0.00 3.41
4690 9349 2.324860 TGTGACATCGCTGTAAAGTCG 58.675 47.619 0.00 0.00 35.14 4.18
4696 9355 5.118050 TGACATCGCTGTAAAGTCGTTTAAG 59.882 40.000 0.00 0.00 35.14 1.85
4774 9433 5.348997 GGATGAAGAAACGACCTGTAAAGAG 59.651 44.000 0.00 0.00 0.00 2.85
4842 9501 9.554395 TTTATGTCAGTAATTTGAACTCAGTGA 57.446 29.630 0.00 0.00 0.00 3.41
4874 9533 6.291060 CGAGTAATTGTTGTTTGTGAACTTGC 60.291 38.462 0.00 0.00 36.70 4.01
4877 9536 8.413229 AGTAATTGTTGTTTGTGAACTTGCTAT 58.587 29.630 0.00 0.00 36.70 2.97
4914 9573 7.386848 ACTTTAGCTATTATGACGTTTGTGTGT 59.613 33.333 0.00 0.00 0.00 3.72
4935 9594 2.771089 TGTCATGTGTGAAGAAGGCTC 58.229 47.619 0.00 0.00 35.80 4.70
4936 9595 2.369860 TGTCATGTGTGAAGAAGGCTCT 59.630 45.455 0.00 0.00 35.80 4.09
4953 9612 2.931320 GCTCTGGAAGACGGGTTAACAG 60.931 54.545 8.10 3.37 38.67 3.16
4968 9627 4.263572 CAGCCCAACCCCACGTCA 62.264 66.667 0.00 0.00 0.00 4.35
5006 9665 2.354805 GGCACGAACCCTAGAAACATCT 60.355 50.000 0.00 0.00 0.00 2.90
5040 9699 1.394151 CCCTCCCCCTCTTGACTCT 59.606 63.158 0.00 0.00 0.00 3.24
5058 9717 2.760385 GCCCTAGCACCGTCTCCT 60.760 66.667 0.00 0.00 39.53 3.69
5153 9815 1.382695 CCCCTGTATCTGGTCGGGT 60.383 63.158 0.00 0.00 32.91 5.28
5242 9904 2.915659 TGAAGCTCGGACGGTGGT 60.916 61.111 0.00 0.00 0.00 4.16
5253 9915 4.752879 CGGTGGTGTTCCGGCGAT 62.753 66.667 9.30 0.00 43.68 4.58
5268 9930 1.448922 GCGATCTAGAGACGGTGGCT 61.449 60.000 18.87 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
239 250 2.088104 TCAGCCAGATCGGGTTAGAT 57.912 50.000 13.75 0.00 45.83 1.98
307 330 1.023513 GCAGCAGCAGAAGGTAGGTG 61.024 60.000 0.00 0.00 41.58 4.00
410 442 0.666913 TGATCTAGGGTTAGCGCGAC 59.333 55.000 12.10 4.91 0.00 5.19
429 461 0.324460 CCCTACCGACACTCCCTTCT 60.324 60.000 0.00 0.00 0.00 2.85
445 477 3.412386 GTTAATCGCTGCCATAATCCCT 58.588 45.455 0.00 0.00 0.00 4.20
452 484 0.178068 ACGAGGTTAATCGCTGCCAT 59.822 50.000 0.00 0.00 46.60 4.40
497 529 4.262894 CCCTGTGACCCACGCTATATAAAT 60.263 45.833 0.00 0.00 37.14 1.40
571 603 2.914097 AACGGGTCGAACGGTCCT 60.914 61.111 14.54 0.00 35.23 3.85
574 606 4.303993 CCCAACGGGTCGAACGGT 62.304 66.667 8.00 8.00 38.25 4.83
607 639 1.138266 GAGGCGGCTGTTAGGTTGATA 59.862 52.381 19.63 0.00 0.00 2.15
623 655 0.388659 ATCTGCTCGTCTGATGAGGC 59.611 55.000 24.20 17.49 31.96 4.70
627 659 1.850377 GTCCATCTGCTCGTCTGATG 58.150 55.000 14.97 14.97 45.35 3.07
628 660 0.383590 CGTCCATCTGCTCGTCTGAT 59.616 55.000 0.00 0.00 34.21 2.90
629 661 1.657751 CCGTCCATCTGCTCGTCTGA 61.658 60.000 0.00 0.00 0.00 3.27
630 662 1.226802 CCGTCCATCTGCTCGTCTG 60.227 63.158 0.00 0.00 0.00 3.51
631 663 2.418910 CCCGTCCATCTGCTCGTCT 61.419 63.158 0.00 0.00 0.00 4.18
632 664 2.105128 CCCGTCCATCTGCTCGTC 59.895 66.667 0.00 0.00 0.00 4.20
633 665 3.461773 CCCCGTCCATCTGCTCGT 61.462 66.667 0.00 0.00 0.00 4.18
634 666 3.461773 ACCCCGTCCATCTGCTCG 61.462 66.667 0.00 0.00 0.00 5.03
635 667 2.187946 CACCCCGTCCATCTGCTC 59.812 66.667 0.00 0.00 0.00 4.26
636 668 3.402681 CCACCCCGTCCATCTGCT 61.403 66.667 0.00 0.00 0.00 4.24
638 670 3.402681 AGCCACCCCGTCCATCTG 61.403 66.667 0.00 0.00 0.00 2.90
639 671 3.402681 CAGCCACCCCGTCCATCT 61.403 66.667 0.00 0.00 0.00 2.90
640 672 3.391665 CTCAGCCACCCCGTCCATC 62.392 68.421 0.00 0.00 0.00 3.51
641 673 3.402681 CTCAGCCACCCCGTCCAT 61.403 66.667 0.00 0.00 0.00 3.41
668 700 4.459089 AGAGAAGAAGCCGCCCGC 62.459 66.667 0.00 0.00 37.98 6.13
669 701 2.202810 GAGAGAAGAAGCCGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
670 702 2.188207 GGAGAGAAGAAGCCGCCC 59.812 66.667 0.00 0.00 0.00 6.13
671 703 1.153469 CAGGAGAGAAGAAGCCGCC 60.153 63.158 0.00 0.00 0.00 6.13
672 704 1.813337 GCAGGAGAGAAGAAGCCGC 60.813 63.158 0.00 0.00 0.00 6.53
673 705 0.179113 GAGCAGGAGAGAAGAAGCCG 60.179 60.000 0.00 0.00 0.00 5.52
674 706 0.179113 CGAGCAGGAGAGAAGAAGCC 60.179 60.000 0.00 0.00 0.00 4.35
675 707 0.814457 TCGAGCAGGAGAGAAGAAGC 59.186 55.000 0.00 0.00 0.00 3.86
676 708 3.446799 CATTCGAGCAGGAGAGAAGAAG 58.553 50.000 0.00 0.00 0.00 2.85
677 709 2.167281 CCATTCGAGCAGGAGAGAAGAA 59.833 50.000 0.00 0.00 0.00 2.52
678 710 1.753649 CCATTCGAGCAGGAGAGAAGA 59.246 52.381 0.00 0.00 0.00 2.87
679 711 1.202510 CCCATTCGAGCAGGAGAGAAG 60.203 57.143 1.87 0.00 0.00 2.85
680 712 0.826715 CCCATTCGAGCAGGAGAGAA 59.173 55.000 1.87 0.00 0.00 2.87
681 713 0.033109 TCCCATTCGAGCAGGAGAGA 60.033 55.000 1.87 0.00 0.00 3.10
682 714 2.509512 TCCCATTCGAGCAGGAGAG 58.490 57.895 1.87 0.00 0.00 3.20
683 715 4.785575 TCCCATTCGAGCAGGAGA 57.214 55.556 1.87 0.00 0.00 3.71
690 722 1.372087 GCAACCAGCTCCCATTCGAG 61.372 60.000 0.00 0.00 41.15 4.04
691 723 1.377202 GCAACCAGCTCCCATTCGA 60.377 57.895 0.00 0.00 41.15 3.71
692 724 2.753966 CGCAACCAGCTCCCATTCG 61.754 63.158 0.00 0.00 42.61 3.34
693 725 1.675641 ACGCAACCAGCTCCCATTC 60.676 57.895 0.00 0.00 42.61 2.67
694 726 1.973281 CACGCAACCAGCTCCCATT 60.973 57.895 0.00 0.00 42.61 3.16
695 727 2.360350 CACGCAACCAGCTCCCAT 60.360 61.111 0.00 0.00 42.61 4.00
696 728 3.414136 AACACGCAACCAGCTCCCA 62.414 57.895 0.00 0.00 42.61 4.37
697 729 2.594592 AACACGCAACCAGCTCCC 60.595 61.111 0.00 0.00 42.61 4.30
698 730 2.946762 GAACACGCAACCAGCTCC 59.053 61.111 0.00 0.00 42.61 4.70
699 731 1.291877 ATCGAACACGCAACCAGCTC 61.292 55.000 0.00 0.00 42.61 4.09
700 732 1.291877 GATCGAACACGCAACCAGCT 61.292 55.000 0.00 0.00 42.61 4.24
701 733 1.132640 GATCGAACACGCAACCAGC 59.867 57.895 0.00 0.00 40.87 4.85
702 734 0.439985 CAGATCGAACACGCAACCAG 59.560 55.000 0.00 0.00 0.00 4.00
703 735 0.948623 CCAGATCGAACACGCAACCA 60.949 55.000 0.00 0.00 0.00 3.67
704 736 0.949105 ACCAGATCGAACACGCAACC 60.949 55.000 0.00 0.00 0.00 3.77
705 737 0.438830 GACCAGATCGAACACGCAAC 59.561 55.000 0.00 0.00 0.00 4.17
706 738 0.032815 TGACCAGATCGAACACGCAA 59.967 50.000 0.00 0.00 0.00 4.85
707 739 0.666274 GTGACCAGATCGAACACGCA 60.666 55.000 0.00 0.00 0.00 5.24
708 740 1.674611 CGTGACCAGATCGAACACGC 61.675 60.000 18.35 4.84 45.07 5.34
709 741 2.349843 CGTGACCAGATCGAACACG 58.650 57.895 17.42 17.42 45.46 4.49
710 742 1.618861 CTCGTGACCAGATCGAACAC 58.381 55.000 0.00 0.00 33.32 3.32
711 743 0.526211 CCTCGTGACCAGATCGAACA 59.474 55.000 0.00 0.00 33.32 3.18
712 744 0.179134 CCCTCGTGACCAGATCGAAC 60.179 60.000 0.00 0.00 33.32 3.95
713 745 1.320344 CCCCTCGTGACCAGATCGAA 61.320 60.000 0.00 0.00 33.32 3.71
714 746 1.753078 CCCCTCGTGACCAGATCGA 60.753 63.158 0.00 0.00 0.00 3.59
715 747 2.786495 CCCCCTCGTGACCAGATCG 61.786 68.421 0.00 0.00 0.00 3.69
716 748 3.095347 GCCCCCTCGTGACCAGATC 62.095 68.421 0.00 0.00 0.00 2.75
717 749 3.083997 GCCCCCTCGTGACCAGAT 61.084 66.667 0.00 0.00 0.00 2.90
721 753 4.410400 CTTGGCCCCCTCGTGACC 62.410 72.222 0.00 0.00 0.00 4.02
722 754 3.637273 ACTTGGCCCCCTCGTGAC 61.637 66.667 0.00 0.00 0.00 3.67
723 755 3.636231 CACTTGGCCCCCTCGTGA 61.636 66.667 0.00 0.00 30.27 4.35
724 756 3.491598 AACACTTGGCCCCCTCGTG 62.492 63.158 0.00 2.76 33.22 4.35
725 757 3.175710 AACACTTGGCCCCCTCGT 61.176 61.111 0.00 0.00 0.00 4.18
726 758 2.672996 CAACACTTGGCCCCCTCG 60.673 66.667 0.00 0.00 0.00 4.63
727 759 2.283173 CCAACACTTGGCCCCCTC 60.283 66.667 0.00 0.00 45.17 4.30
735 767 3.305516 GGCCCAGCCCAACACTTG 61.306 66.667 0.00 0.00 44.06 3.16
756 788 2.029307 GAAGTGGCTAGGGGCGTAGG 62.029 65.000 0.00 0.00 42.94 3.18
757 789 1.043673 AGAAGTGGCTAGGGGCGTAG 61.044 60.000 0.00 0.00 42.94 3.51
758 790 1.001248 AGAAGTGGCTAGGGGCGTA 59.999 57.895 0.00 0.00 42.94 4.42
759 791 2.284699 AGAAGTGGCTAGGGGCGT 60.285 61.111 0.00 0.00 42.94 5.68
760 792 1.899437 TTCAGAAGTGGCTAGGGGCG 61.899 60.000 0.00 0.00 42.94 6.13
761 793 0.328258 TTTCAGAAGTGGCTAGGGGC 59.672 55.000 0.00 0.00 40.90 5.80
762 794 3.372440 AATTTCAGAAGTGGCTAGGGG 57.628 47.619 0.00 0.00 0.00 4.79
763 795 5.012893 AGAAAATTTCAGAAGTGGCTAGGG 58.987 41.667 8.55 0.00 0.00 3.53
764 796 6.881602 AGTAGAAAATTTCAGAAGTGGCTAGG 59.118 38.462 8.55 0.00 0.00 3.02
765 797 7.821846 AGAGTAGAAAATTTCAGAAGTGGCTAG 59.178 37.037 8.55 0.00 0.00 3.42
766 798 7.680730 AGAGTAGAAAATTTCAGAAGTGGCTA 58.319 34.615 8.55 0.00 0.00 3.93
767 799 6.538263 AGAGTAGAAAATTTCAGAAGTGGCT 58.462 36.000 8.55 0.00 0.00 4.75
768 800 6.652900 AGAGAGTAGAAAATTTCAGAAGTGGC 59.347 38.462 8.55 0.00 0.00 5.01
769 801 8.093927 AGAGAGAGTAGAAAATTTCAGAAGTGG 58.906 37.037 8.55 0.00 0.00 4.00
787 819 9.482627 CGCCTTATAAAAATGAATAGAGAGAGT 57.517 33.333 0.00 0.00 0.00 3.24
788 820 8.439286 GCGCCTTATAAAAATGAATAGAGAGAG 58.561 37.037 0.00 0.00 0.00 3.20
789 821 8.150945 AGCGCCTTATAAAAATGAATAGAGAGA 58.849 33.333 2.29 0.00 0.00 3.10
790 822 8.316640 AGCGCCTTATAAAAATGAATAGAGAG 57.683 34.615 2.29 0.00 0.00 3.20
791 823 8.150945 AGAGCGCCTTATAAAAATGAATAGAGA 58.849 33.333 2.29 0.00 0.00 3.10
792 824 8.316640 AGAGCGCCTTATAAAAATGAATAGAG 57.683 34.615 2.29 0.00 0.00 2.43
793 825 9.424319 CTAGAGCGCCTTATAAAAATGAATAGA 57.576 33.333 2.29 0.00 0.00 1.98
794 826 9.424319 TCTAGAGCGCCTTATAAAAATGAATAG 57.576 33.333 2.29 0.00 0.00 1.73
795 827 9.204570 GTCTAGAGCGCCTTATAAAAATGAATA 57.795 33.333 2.29 0.00 0.00 1.75
796 828 7.715249 TGTCTAGAGCGCCTTATAAAAATGAAT 59.285 33.333 2.29 0.00 0.00 2.57
797 829 7.045416 TGTCTAGAGCGCCTTATAAAAATGAA 58.955 34.615 2.29 0.00 0.00 2.57
798 830 6.578944 TGTCTAGAGCGCCTTATAAAAATGA 58.421 36.000 2.29 0.00 0.00 2.57
799 831 6.844696 TGTCTAGAGCGCCTTATAAAAATG 57.155 37.500 2.29 0.00 0.00 2.32
800 832 8.451908 AAATGTCTAGAGCGCCTTATAAAAAT 57.548 30.769 2.29 0.00 0.00 1.82
801 833 7.859325 AAATGTCTAGAGCGCCTTATAAAAA 57.141 32.000 2.29 0.00 0.00 1.94
802 834 7.859325 AAAATGTCTAGAGCGCCTTATAAAA 57.141 32.000 2.29 0.00 0.00 1.52
803 835 8.418662 TCTAAAATGTCTAGAGCGCCTTATAAA 58.581 33.333 2.29 0.00 0.00 1.40
804 836 7.866393 GTCTAAAATGTCTAGAGCGCCTTATAA 59.134 37.037 2.29 0.00 0.00 0.98
805 837 7.013942 TGTCTAAAATGTCTAGAGCGCCTTATA 59.986 37.037 2.29 0.00 0.00 0.98
806 838 6.183360 TGTCTAAAATGTCTAGAGCGCCTTAT 60.183 38.462 2.29 0.00 0.00 1.73
807 839 5.126545 TGTCTAAAATGTCTAGAGCGCCTTA 59.873 40.000 2.29 0.00 0.00 2.69
808 840 4.081642 TGTCTAAAATGTCTAGAGCGCCTT 60.082 41.667 2.29 0.00 0.00 4.35
809 841 3.447586 TGTCTAAAATGTCTAGAGCGCCT 59.552 43.478 2.29 3.28 0.00 5.52
810 842 3.782046 TGTCTAAAATGTCTAGAGCGCC 58.218 45.455 2.29 0.00 0.00 6.53
811 843 3.244111 GCTGTCTAAAATGTCTAGAGCGC 59.756 47.826 0.00 0.00 0.00 5.92
812 844 4.677584 AGCTGTCTAAAATGTCTAGAGCG 58.322 43.478 0.00 0.00 0.00 5.03
813 845 5.872070 ACAAGCTGTCTAAAATGTCTAGAGC 59.128 40.000 0.00 0.00 0.00 4.09
814 846 8.988064 TTACAAGCTGTCTAAAATGTCTAGAG 57.012 34.615 0.00 0.00 0.00 2.43
815 847 9.772973 TTTTACAAGCTGTCTAAAATGTCTAGA 57.227 29.630 0.00 0.00 0.00 2.43
816 848 9.813080 GTTTTACAAGCTGTCTAAAATGTCTAG 57.187 33.333 0.00 0.00 0.00 2.43
817 849 9.332502 TGTTTTACAAGCTGTCTAAAATGTCTA 57.667 29.630 0.00 0.00 0.00 2.59
818 850 8.220755 TGTTTTACAAGCTGTCTAAAATGTCT 57.779 30.769 0.00 0.00 0.00 3.41
819 851 7.113544 GCTGTTTTACAAGCTGTCTAAAATGTC 59.886 37.037 0.00 0.00 0.00 3.06
820 852 6.918022 GCTGTTTTACAAGCTGTCTAAAATGT 59.082 34.615 0.00 0.00 0.00 2.71
821 853 7.141363 AGCTGTTTTACAAGCTGTCTAAAATG 58.859 34.615 0.00 0.00 33.53 2.32
822 854 7.013274 TGAGCTGTTTTACAAGCTGTCTAAAAT 59.987 33.333 1.21 0.00 34.43 1.82
823 855 6.317642 TGAGCTGTTTTACAAGCTGTCTAAAA 59.682 34.615 1.21 0.00 34.43 1.52
824 856 5.820423 TGAGCTGTTTTACAAGCTGTCTAAA 59.180 36.000 1.21 0.00 34.43 1.85
825 857 5.364778 TGAGCTGTTTTACAAGCTGTCTAA 58.635 37.500 1.21 0.00 34.43 2.10
826 858 4.956085 TGAGCTGTTTTACAAGCTGTCTA 58.044 39.130 1.21 0.00 34.43 2.59
827 859 3.808728 TGAGCTGTTTTACAAGCTGTCT 58.191 40.909 1.21 0.00 34.43 3.41
828 860 4.756084 ATGAGCTGTTTTACAAGCTGTC 57.244 40.909 1.21 0.00 34.43 3.51
829 861 5.520376 AAATGAGCTGTTTTACAAGCTGT 57.480 34.783 1.21 0.00 34.43 4.40
830 862 5.978919 TGAAAATGAGCTGTTTTACAAGCTG 59.021 36.000 1.21 0.00 34.43 4.24
831 863 6.147864 TGAAAATGAGCTGTTTTACAAGCT 57.852 33.333 0.00 0.00 36.05 3.74
832 864 5.979517 ACTGAAAATGAGCTGTTTTACAAGC 59.020 36.000 0.00 0.00 0.00 4.01
833 865 7.489113 ACAACTGAAAATGAGCTGTTTTACAAG 59.511 33.333 0.00 0.78 0.00 3.16
834 866 7.319646 ACAACTGAAAATGAGCTGTTTTACAA 58.680 30.769 0.00 0.00 0.00 2.41
835 867 6.862209 ACAACTGAAAATGAGCTGTTTTACA 58.138 32.000 0.00 0.00 0.00 2.41
836 868 7.166473 CAGACAACTGAAAATGAGCTGTTTTAC 59.834 37.037 0.00 0.00 46.03 2.01
837 869 7.195646 CAGACAACTGAAAATGAGCTGTTTTA 58.804 34.615 0.00 0.00 46.03 1.52
838 870 6.038356 CAGACAACTGAAAATGAGCTGTTTT 58.962 36.000 0.00 0.00 46.03 2.43
839 871 5.585390 CAGACAACTGAAAATGAGCTGTTT 58.415 37.500 0.00 0.00 46.03 2.83
840 872 5.179045 CAGACAACTGAAAATGAGCTGTT 57.821 39.130 0.00 0.00 46.03 3.16
841 873 4.825546 CAGACAACTGAAAATGAGCTGT 57.174 40.909 0.00 0.00 46.03 4.40
853 885 9.878599 ATTTTTATAAGTCGTTTCAGACAACTG 57.121 29.630 0.00 0.00 43.24 3.16
854 886 9.878599 CATTTTTATAAGTCGTTTCAGACAACT 57.121 29.630 0.00 0.00 43.24 3.16
855 887 9.872757 TCATTTTTATAAGTCGTTTCAGACAAC 57.127 29.630 0.00 0.00 43.24 3.32
857 889 9.872757 GTTCATTTTTATAAGTCGTTTCAGACA 57.127 29.630 0.00 0.00 43.24 3.41
858 890 9.872757 TGTTCATTTTTATAAGTCGTTTCAGAC 57.127 29.630 0.00 0.00 41.23 3.51
862 894 9.543018 CCTCTGTTCATTTTTATAAGTCGTTTC 57.457 33.333 0.00 0.00 0.00 2.78
863 895 8.512138 CCCTCTGTTCATTTTTATAAGTCGTTT 58.488 33.333 0.00 0.00 0.00 3.60
864 896 7.881232 TCCCTCTGTTCATTTTTATAAGTCGTT 59.119 33.333 0.00 0.00 0.00 3.85
865 897 7.391620 TCCCTCTGTTCATTTTTATAAGTCGT 58.608 34.615 0.00 0.00 0.00 4.34
866 898 7.549488 ACTCCCTCTGTTCATTTTTATAAGTCG 59.451 37.037 0.00 0.00 0.00 4.18
867 899 8.794335 ACTCCCTCTGTTCATTTTTATAAGTC 57.206 34.615 0.00 0.00 0.00 3.01
868 900 9.892130 CTACTCCCTCTGTTCATTTTTATAAGT 57.108 33.333 0.00 0.00 0.00 2.24
869 901 8.831550 GCTACTCCCTCTGTTCATTTTTATAAG 58.168 37.037 0.00 0.00 0.00 1.73
870 902 8.325787 TGCTACTCCCTCTGTTCATTTTTATAA 58.674 33.333 0.00 0.00 0.00 0.98
871 903 7.857456 TGCTACTCCCTCTGTTCATTTTTATA 58.143 34.615 0.00 0.00 0.00 0.98
872 904 6.721318 TGCTACTCCCTCTGTTCATTTTTAT 58.279 36.000 0.00 0.00 0.00 1.40
873 905 6.121776 TGCTACTCCCTCTGTTCATTTTTA 57.878 37.500 0.00 0.00 0.00 1.52
874 906 4.985538 TGCTACTCCCTCTGTTCATTTTT 58.014 39.130 0.00 0.00 0.00 1.94
875 907 4.640771 TGCTACTCCCTCTGTTCATTTT 57.359 40.909 0.00 0.00 0.00 1.82
876 908 4.851639 ATGCTACTCCCTCTGTTCATTT 57.148 40.909 0.00 0.00 0.00 2.32
877 909 6.212388 CCTATATGCTACTCCCTCTGTTCATT 59.788 42.308 0.00 0.00 0.00 2.57
878 910 5.719085 CCTATATGCTACTCCCTCTGTTCAT 59.281 44.000 0.00 0.00 0.00 2.57
879 911 5.080337 CCTATATGCTACTCCCTCTGTTCA 58.920 45.833 0.00 0.00 0.00 3.18
880 912 4.081917 GCCTATATGCTACTCCCTCTGTTC 60.082 50.000 0.00 0.00 0.00 3.18
881 913 3.835395 GCCTATATGCTACTCCCTCTGTT 59.165 47.826 0.00 0.00 0.00 3.16
882 914 3.076785 AGCCTATATGCTACTCCCTCTGT 59.923 47.826 0.03 0.00 40.56 3.41
883 915 3.707316 AGCCTATATGCTACTCCCTCTG 58.293 50.000 0.03 0.00 40.56 3.35
884 916 4.412060 AAGCCTATATGCTACTCCCTCT 57.588 45.455 2.71 0.00 41.80 3.69
885 917 6.800072 ATTAAGCCTATATGCTACTCCCTC 57.200 41.667 2.71 0.00 41.80 4.30
886 918 7.575499 AAATTAAGCCTATATGCTACTCCCT 57.425 36.000 2.71 0.00 41.80 4.20
887 919 8.637196 AAAAATTAAGCCTATATGCTACTCCC 57.363 34.615 2.71 0.00 41.80 4.30
918 950 4.473520 CCAGGCTACCAGGGCGTG 62.474 72.222 0.00 0.00 42.76 5.34
947 979 2.650778 GAACCTTGCCGGCAAAGG 59.349 61.111 38.96 37.18 35.33 3.11
948 980 2.255252 CGAACCTTGCCGGCAAAG 59.745 61.111 38.96 35.14 35.33 2.77
949 981 3.291383 CCGAACCTTGCCGGCAAA 61.291 61.111 38.96 24.01 39.22 3.68
950 982 3.561120 ATCCGAACCTTGCCGGCAA 62.561 57.895 37.78 37.78 44.96 4.52
957 989 2.009042 GCCTCACAGATCCGAACCTTG 61.009 57.143 0.00 0.00 0.00 3.61
977 1010 1.919956 CTCTTTTCGCTGCTGCCTGG 61.920 60.000 10.24 0.00 35.36 4.45
1020 1053 0.249911 ATCTCATCTTTACCGGCGGC 60.250 55.000 28.71 0.00 0.00 6.53
1035 1068 1.281899 CTTTCGGCTCAACGGATCTC 58.718 55.000 0.00 0.00 0.00 2.75
1329 2829 4.808895 CGACCGGAATGAAGTATGAATTGA 59.191 41.667 9.46 0.00 0.00 2.57
1375 2876 2.386661 AAGAGGCGTTCATGTCGAAT 57.613 45.000 14.71 4.43 35.63 3.34
1393 2894 4.216472 TGCTTGCAAACCATGATTACGTAA 59.784 37.500 11.02 11.02 0.00 3.18
1419 2920 3.684788 ACTAGTTCATTTCGCACATGACC 59.315 43.478 0.00 0.00 30.09 4.02
1420 2921 4.436050 CCACTAGTTCATTTCGCACATGAC 60.436 45.833 0.00 0.00 30.09 3.06
1643 3148 4.382470 CGTTGAGACAGAGGAGGATTCAAT 60.382 45.833 0.00 0.00 0.00 2.57
1645 3150 2.493675 CGTTGAGACAGAGGAGGATTCA 59.506 50.000 0.00 0.00 0.00 2.57
1779 3321 3.535962 GCAGCCGAGAGAGGGAGG 61.536 72.222 0.00 0.00 0.00 4.30
1780 3322 3.535962 GGCAGCCGAGAGAGGGAG 61.536 72.222 0.00 0.00 0.00 4.30
1851 3393 1.065701 CTCATCCGTAGTCGTCCCTTG 59.934 57.143 0.00 0.00 35.01 3.61
1860 3405 1.107114 CAGTCTGCCTCATCCGTAGT 58.893 55.000 0.00 0.00 0.00 2.73
1862 3407 1.816537 GCAGTCTGCCTCATCCGTA 59.183 57.895 14.27 0.00 37.42 4.02
1940 3488 1.274650 ACCTCTCCCATCCTCACCATT 60.275 52.381 0.00 0.00 0.00 3.16
1941 3489 0.344790 ACCTCTCCCATCCTCACCAT 59.655 55.000 0.00 0.00 0.00 3.55
1960 3508 3.770040 CATCGTCCGCCACCCTCA 61.770 66.667 0.00 0.00 0.00 3.86
1980 3528 4.767255 CTTTCCCGCGCCAGAGCT 62.767 66.667 0.00 0.00 36.60 4.09
2018 3566 6.081356 ACCAAATTCATTAAACCCTTCCTCA 58.919 36.000 0.00 0.00 0.00 3.86
2032 3580 4.981674 CGCCGCAAATTATACCAAATTCAT 59.018 37.500 0.00 0.00 0.00 2.57
2044 3593 2.820479 CGACCCCGCCGCAAATTA 60.820 61.111 0.00 0.00 0.00 1.40
2070 3619 4.552365 ATGAGGCGTCCGGGCATG 62.552 66.667 6.96 0.00 45.36 4.06
2071 3620 4.552365 CATGAGGCGTCCGGGCAT 62.552 66.667 6.96 0.00 45.36 4.40
2103 3679 3.973973 CTGTCTCCCCTTATATCCAACCA 59.026 47.826 0.00 0.00 0.00 3.67
2114 3690 1.985895 CCAGGTTTACTGTCTCCCCTT 59.014 52.381 0.00 0.00 46.06 3.95
2120 3696 0.763035 AACGCCCAGGTTTACTGTCT 59.237 50.000 0.00 0.00 46.06 3.41
2122 3698 1.134037 TCAAACGCCCAGGTTTACTGT 60.134 47.619 0.00 0.00 46.06 3.55
2124 3700 1.544759 CCTCAAACGCCCAGGTTTACT 60.545 52.381 0.00 0.00 38.01 2.24
2127 3703 2.200337 GCCTCAAACGCCCAGGTTT 61.200 57.895 0.00 0.00 40.59 3.27
2129 3705 3.553095 GAGCCTCAAACGCCCAGGT 62.553 63.158 0.00 0.00 0.00 4.00
2146 3722 5.505819 CGATCTAGACAGACGCCTTAAATGA 60.506 44.000 0.00 0.00 32.25 2.57
2184 3760 2.595750 AGCCGCCTCATACTCTATCT 57.404 50.000 0.00 0.00 0.00 1.98
2220 3796 7.930513 TGATTGTATGTTAGATGTTAGAGCG 57.069 36.000 0.00 0.00 0.00 5.03
2244 3821 3.489398 GCTCGGTCGATGAGTACAAGAAT 60.489 47.826 16.14 0.00 35.85 2.40
2250 3827 0.739561 AAGGCTCGGTCGATGAGTAC 59.260 55.000 16.14 10.98 35.85 2.73
2295 3873 2.465860 TAACATGGTCGGTGTTCCAG 57.534 50.000 0.00 0.00 40.13 3.86
2459 4037 3.005472 ACATTACGTGTCAGTGCTACTGT 59.995 43.478 13.59 0.00 46.03 3.55
2520 4123 6.750039 CGTTCTTCAGAGAAGGTAAGAGATTC 59.250 42.308 6.89 0.00 42.35 2.52
2748 4357 1.950973 GAGCGGGGTGGAGAGAGAAC 61.951 65.000 0.00 0.00 0.00 3.01
2796 4409 5.835113 AAGCATCAGCAATAAAATACGGT 57.165 34.783 0.00 0.00 45.49 4.83
3030 4645 6.129053 CAGAAACTGCTGAGAAAATATCCC 57.871 41.667 0.00 0.00 38.14 3.85
3060 4675 4.617875 CCCTTGCTGTTAGGGTCG 57.382 61.111 7.76 0.00 46.16 4.79
3149 4768 6.211184 TGAGAAAATATCCTGCCACAATGTTT 59.789 34.615 0.00 0.00 0.00 2.83
3157 4776 4.922206 ACTGTTGAGAAAATATCCTGCCA 58.078 39.130 0.00 0.00 0.00 4.92
3275 4896 0.238289 AACCAGAAACGCATTCGCAG 59.762 50.000 0.00 0.00 43.15 5.18
3396 5033 1.527034 CAGCAGCACATACAACTGGT 58.473 50.000 0.00 0.00 42.52 4.00
3432 5069 5.591877 AGGATAGCTGAATAAGTGGCAAAAG 59.408 40.000 0.00 0.00 0.00 2.27
3454 5091 0.387202 CCTGGCTCAGATACACGAGG 59.613 60.000 4.00 0.00 32.44 4.63
3722 5437 1.338973 ACACACCTCGTCGTTACATGT 59.661 47.619 2.69 2.69 0.00 3.21
3917 5726 7.127032 ACATCAAATGACTCTCCTATCCTTTCT 59.873 37.037 0.00 0.00 0.00 2.52
3927 5736 4.883585 TGGCATTACATCAAATGACTCTCC 59.116 41.667 4.23 0.00 43.97 3.71
3935 5744 9.100554 CACACAATTTATGGCATTACATCAAAT 57.899 29.630 4.78 1.28 32.39 2.32
4143 5966 7.327518 GCACAAAAACTATACAAACATACACCC 59.672 37.037 0.00 0.00 0.00 4.61
4147 5972 7.079475 ACCGCACAAAAACTATACAAACATAC 58.921 34.615 0.00 0.00 0.00 2.39
4175 6000 5.104235 AGTTTTAGGAGGTACAAACACCAGT 60.104 40.000 6.91 0.00 41.40 4.00
4188 6125 8.970859 AGATACAATCATCAAGTTTTAGGAGG 57.029 34.615 0.00 0.00 0.00 4.30
4210 6147 8.147704 GCTAAGAGCTAACAGATTTTAGGAGAT 58.852 37.037 0.00 0.00 38.45 2.75
4211 6148 7.418025 GGCTAAGAGCTAACAGATTTTAGGAGA 60.418 40.741 0.00 0.00 41.99 3.71
4212 6149 6.704050 GGCTAAGAGCTAACAGATTTTAGGAG 59.296 42.308 0.00 0.00 41.99 3.69
4213 6150 6.156256 TGGCTAAGAGCTAACAGATTTTAGGA 59.844 38.462 0.00 0.00 41.99 2.94
4214 6151 6.349300 TGGCTAAGAGCTAACAGATTTTAGG 58.651 40.000 0.00 0.00 41.99 2.69
4215 6152 7.849804 TTGGCTAAGAGCTAACAGATTTTAG 57.150 36.000 0.00 0.00 41.99 1.85
4216 6153 8.807948 ATTTGGCTAAGAGCTAACAGATTTTA 57.192 30.769 0.00 0.00 41.47 1.52
4217 6154 7.613411 AGATTTGGCTAAGAGCTAACAGATTTT 59.387 33.333 0.00 0.00 41.47 1.82
4218 6155 7.066766 CAGATTTGGCTAAGAGCTAACAGATTT 59.933 37.037 0.00 0.00 41.47 2.17
4220 6157 6.054295 CAGATTTGGCTAAGAGCTAACAGAT 58.946 40.000 0.00 0.00 41.47 2.90
4222 6159 5.181748 ACAGATTTGGCTAAGAGCTAACAG 58.818 41.667 0.00 0.00 41.47 3.16
4223 6160 5.165961 ACAGATTTGGCTAAGAGCTAACA 57.834 39.130 0.00 0.00 41.47 2.41
4398 6348 6.032956 TGATTACATAGTGGTTCACGTTCT 57.967 37.500 0.00 0.00 39.64 3.01
4413 6363 6.215636 AGACCAACTAGGGTTCTTGATTACAT 59.784 38.462 0.00 0.00 42.53 2.29
4468 6418 2.467880 GAATGGAGGGAGTGGTAGTCA 58.532 52.381 0.00 0.00 0.00 3.41
4540 6508 6.963083 ATATAGTCGCAATATACTCCCTCC 57.037 41.667 0.00 0.00 0.00 4.30
4595 6563 5.501156 AGAATTGGGAAAGACTGACATACC 58.499 41.667 0.00 0.00 0.00 2.73
4614 9265 6.781507 TCCACATGACATCAGAGATAGAGAAT 59.218 38.462 0.00 0.00 0.00 2.40
4654 9313 7.519488 GCGATGTCACATATTCATCACTTTCAT 60.519 37.037 0.00 0.00 38.15 2.57
4663 9322 6.763135 ACTTTACAGCGATGTCACATATTCAT 59.237 34.615 10.82 0.00 0.00 2.57
4774 9433 2.093764 CAGGGACATCTCCACTCTTCAC 60.094 54.545 0.00 0.00 38.52 3.18
4842 9501 4.568152 AACAACAATTACTCGCAAGCTT 57.432 36.364 0.00 0.00 37.18 3.74
4904 9563 2.845385 CACACATGACAACACACAAACG 59.155 45.455 0.00 0.00 0.00 3.60
4914 9573 3.141398 GAGCCTTCTTCACACATGACAA 58.859 45.455 0.00 0.00 33.38 3.18
4935 9594 1.439679 GCTGTTAACCCGTCTTCCAG 58.560 55.000 2.48 0.00 0.00 3.86
4936 9595 0.035739 GGCTGTTAACCCGTCTTCCA 59.964 55.000 2.48 0.00 0.00 3.53
4968 9627 1.080974 CCGCTGTTTACTCGTCCGT 60.081 57.895 0.00 0.00 0.00 4.69
4977 9636 1.962306 GGGTTCGTGCCGCTGTTTA 60.962 57.895 0.00 0.00 0.00 2.01
5006 9665 1.305718 GGGCCCCCATTTGCAACTA 60.306 57.895 12.23 0.00 35.81 2.24
5080 9739 1.276705 GACGAAGAGAAAAGGGGCTCT 59.723 52.381 0.00 0.00 43.00 4.09
5139 9801 0.611200 CACCAACCCGACCAGATACA 59.389 55.000 0.00 0.00 0.00 2.29
5141 9803 1.002659 CAACACCAACCCGACCAGATA 59.997 52.381 0.00 0.00 0.00 1.98
5218 9880 3.303135 TCCGAGCTTCACTGCCGT 61.303 61.111 0.00 0.00 0.00 5.68
5223 9885 2.651361 CACCGTCCGAGCTTCACT 59.349 61.111 0.00 0.00 0.00 3.41
5242 9904 1.022735 GTCTCTAGATCGCCGGAACA 58.977 55.000 5.05 0.00 0.00 3.18
5253 9915 2.052690 GCCAGCCACCGTCTCTAGA 61.053 63.158 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.