Multiple sequence alignment - TraesCS3A01G381700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G381700 chr3A 100.000 3479 0 0 1 3479 631774779 631778257 0.000000e+00 6425.0
1 TraesCS3A01G381700 chr3A 95.163 1530 65 6 954 2478 631729323 631727798 0.000000e+00 2407.0
2 TraesCS3A01G381700 chr3A 90.175 458 39 5 2982 3437 728641415 728640962 2.990000e-165 592.0
3 TraesCS3A01G381700 chr3A 76.728 434 96 3 1960 2392 599384999 599384570 1.610000e-58 237.0
4 TraesCS3A01G381700 chr3B 95.120 2377 98 12 616 2982 651256683 651259051 0.000000e+00 3731.0
5 TraesCS3A01G381700 chr3B 94.892 1527 72 4 954 2478 650954556 650953034 0.000000e+00 2383.0
6 TraesCS3A01G381700 chr3B 95.238 42 1 1 231 271 651256008 651256049 8.060000e-07 65.8
7 TraesCS3A01G381700 chr3D 96.987 2157 50 8 590 2736 488234256 488236407 0.000000e+00 3609.0
8 TraesCS3A01G381700 chr3D 95.609 1526 63 2 954 2478 488119340 488117818 0.000000e+00 2444.0
9 TraesCS3A01G381700 chr3D 90.071 141 12 2 91 230 137020886 137021025 7.670000e-42 182.0
10 TraesCS3A01G381700 chr3D 86.250 160 19 3 72 231 595873854 595873698 1.660000e-38 171.0
11 TraesCS3A01G381700 chr3D 86.726 113 15 0 391 503 288550568 288550456 3.650000e-25 126.0
12 TraesCS3A01G381700 chr3D 95.652 69 3 0 2728 2796 488236574 488236642 1.020000e-20 111.0
13 TraesCS3A01G381700 chr5D 83.278 897 140 10 1057 1948 540240497 540239606 0.000000e+00 817.0
14 TraesCS3A01G381700 chr5D 81.871 695 117 9 1419 2107 464457868 464458559 8.370000e-161 577.0
15 TraesCS3A01G381700 chr5D 86.029 136 19 0 91 226 30728677 30728812 2.800000e-31 147.0
16 TraesCS3A01G381700 chr4A 82.943 897 143 10 1057 1948 628090303 628089412 0.000000e+00 800.0
17 TraesCS3A01G381700 chr4A 88.976 127 12 2 105 230 150876663 150876788 4.650000e-34 156.0
18 TraesCS3A01G381700 chr5B 82.628 898 144 12 1057 1948 682538799 682537908 0.000000e+00 784.0
19 TraesCS3A01G381700 chr5B 82.427 717 119 7 1423 2134 571535879 571536593 1.370000e-173 619.0
20 TraesCS3A01G381700 chr5B 87.786 131 13 3 91 220 35248335 35248207 2.160000e-32 150.0
21 TraesCS3A01G381700 chr5B 83.660 153 21 4 91 241 35248168 35248018 1.300000e-29 141.0
22 TraesCS3A01G381700 chr5B 82.569 109 19 0 393 501 571173995 571174103 2.860000e-16 97.1
23 TraesCS3A01G381700 chr1B 93.548 496 28 3 2982 3477 22156582 22157073 0.000000e+00 736.0
24 TraesCS3A01G381700 chr1B 76.380 453 93 12 1945 2392 526749873 526750316 7.510000e-57 231.0
25 TraesCS3A01G381700 chr7A 94.033 486 23 1 2991 3476 540774250 540773771 0.000000e+00 732.0
26 TraesCS3A01G381700 chr2B 93.186 499 30 3 2982 3479 137183662 137183167 0.000000e+00 730.0
27 TraesCS3A01G381700 chr7B 92.731 454 28 1 3026 3479 676304676 676304228 0.000000e+00 651.0
28 TraesCS3A01G381700 chr7B 92.511 454 29 1 3026 3479 676308831 676308383 0.000000e+00 645.0
29 TraesCS3A01G381700 chr2D 90.258 503 42 5 2982 3479 391190 390690 0.000000e+00 651.0
30 TraesCS3A01G381700 chr2D 85.586 111 16 0 391 501 79056209 79056319 2.190000e-22 117.0
31 TraesCS3A01G381700 chr2D 83.186 113 17 1 391 501 66823698 66823586 6.140000e-18 102.0
32 TraesCS3A01G381700 chr2D 79.412 136 14 9 2016 2137 26481152 26481287 2.230000e-12 84.2
33 TraesCS3A01G381700 chr2A 89.980 499 46 4 2982 3479 299785138 299784643 2.930000e-180 641.0
34 TraesCS3A01G381700 chr2A 83.186 113 17 1 391 501 68154956 68155068 6.140000e-18 102.0
35 TraesCS3A01G381700 chr1D 87.776 499 54 5 2982 3477 365971752 365971258 8.370000e-161 577.0
36 TraesCS3A01G381700 chr1D 77.489 462 78 17 1945 2395 394671102 394670656 1.600000e-63 254.0
37 TraesCS3A01G381700 chr1D 86.014 143 20 0 91 233 482898111 482898253 1.670000e-33 154.0
38 TraesCS3A01G381700 chr1D 85.816 141 19 1 91 230 51798702 51798562 7.780000e-32 148.0
39 TraesCS3A01G381700 chr1A 77.609 460 75 19 1945 2392 490413595 490414038 1.600000e-63 254.0
40 TraesCS3A01G381700 chr1A 82.143 252 39 6 1057 1305 490411649 490411897 9.780000e-51 211.0
41 TraesCS3A01G381700 chr6D 85.714 140 19 1 91 229 435078674 435078535 2.800000e-31 147.0
42 TraesCS3A01G381700 chr7D 85.965 114 15 1 391 503 74596083 74596196 1.700000e-23 121.0
43 TraesCS3A01G381700 chr7D 82.143 112 18 2 393 502 562641041 562640930 1.030000e-15 95.3
44 TraesCS3A01G381700 chr6B 84.685 111 14 1 391 501 519402850 519402957 1.320000e-19 108.0
45 TraesCS3A01G381700 chr6B 72.390 431 76 30 3063 3477 1936566 1936969 2.860000e-16 97.1
46 TraesCS3A01G381700 chr4D 82.883 111 19 0 391 501 395958263 395958153 2.210000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G381700 chr3A 631774779 631778257 3478 False 6425.0 6425 100.0000 1 3479 1 chr3A.!!$F1 3478
1 TraesCS3A01G381700 chr3A 631727798 631729323 1525 True 2407.0 2407 95.1630 954 2478 1 chr3A.!!$R2 1524
2 TraesCS3A01G381700 chr3B 650953034 650954556 1522 True 2383.0 2383 94.8920 954 2478 1 chr3B.!!$R1 1524
3 TraesCS3A01G381700 chr3B 651256008 651259051 3043 False 1898.4 3731 95.1790 231 2982 2 chr3B.!!$F1 2751
4 TraesCS3A01G381700 chr3D 488117818 488119340 1522 True 2444.0 2444 95.6090 954 2478 1 chr3D.!!$R2 1524
5 TraesCS3A01G381700 chr3D 488234256 488236642 2386 False 1860.0 3609 96.3195 590 2796 2 chr3D.!!$F2 2206
6 TraesCS3A01G381700 chr5D 540239606 540240497 891 True 817.0 817 83.2780 1057 1948 1 chr5D.!!$R1 891
7 TraesCS3A01G381700 chr5D 464457868 464458559 691 False 577.0 577 81.8710 1419 2107 1 chr5D.!!$F2 688
8 TraesCS3A01G381700 chr4A 628089412 628090303 891 True 800.0 800 82.9430 1057 1948 1 chr4A.!!$R1 891
9 TraesCS3A01G381700 chr5B 682537908 682538799 891 True 784.0 784 82.6280 1057 1948 1 chr5B.!!$R1 891
10 TraesCS3A01G381700 chr5B 571535879 571536593 714 False 619.0 619 82.4270 1423 2134 1 chr5B.!!$F2 711
11 TraesCS3A01G381700 chr7B 676304228 676308831 4603 True 648.0 651 92.6210 3026 3479 2 chr7B.!!$R1 453
12 TraesCS3A01G381700 chr2D 390690 391190 500 True 651.0 651 90.2580 2982 3479 1 chr2D.!!$R1 497
13 TraesCS3A01G381700 chr1A 490411649 490414038 2389 False 232.5 254 79.8760 1057 2392 2 chr1A.!!$F1 1335

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.035820 ATAGAAACGAAGGGCGCCAA 60.036 50.0 30.85 0.00 46.04 4.52 F
64 65 0.672401 TAGAAACGAAGGGCGCCAAG 60.672 55.0 30.85 17.91 46.04 3.61 F
413 441 0.815095 TCGGATGCATACAGACACGT 59.185 50.0 10.18 0.00 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1704 2970 1.476891 GTGAGCATGAGGAGGACGTTA 59.523 52.381 0.0 0.0 0.00 3.18 R
2238 3720 1.206132 ACAATCACGTTCCAGCCGATA 59.794 47.619 0.0 0.0 0.00 2.92 R
2525 4008 4.832266 ACCACATTATTCCACAACACATGT 59.168 37.500 0.0 0.0 45.34 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.190313 TGCGGCAGCCTCCTATTG 59.810 61.111 10.54 0.00 44.33 1.90
18 19 2.366393 TGCGGCAGCCTCCTATTGA 61.366 57.895 10.54 0.00 44.33 2.57
19 20 1.889573 GCGGCAGCCTCCTATTGAC 60.890 63.158 10.54 0.00 37.42 3.18
20 21 1.592669 CGGCAGCCTCCTATTGACG 60.593 63.158 10.54 0.00 36.96 4.35
21 22 1.522569 GGCAGCCTCCTATTGACGT 59.477 57.895 3.29 0.00 0.00 4.34
22 23 0.750850 GGCAGCCTCCTATTGACGTA 59.249 55.000 3.29 0.00 0.00 3.57
23 24 1.138266 GGCAGCCTCCTATTGACGTAA 59.862 52.381 3.29 0.00 0.00 3.18
24 25 2.419574 GGCAGCCTCCTATTGACGTAAA 60.420 50.000 3.29 0.00 0.00 2.01
25 26 2.866762 GCAGCCTCCTATTGACGTAAAG 59.133 50.000 0.00 0.00 0.00 1.85
26 27 3.430374 GCAGCCTCCTATTGACGTAAAGA 60.430 47.826 0.00 0.00 0.00 2.52
27 28 4.363999 CAGCCTCCTATTGACGTAAAGAG 58.636 47.826 0.00 0.00 0.00 2.85
28 29 3.124560 GCCTCCTATTGACGTAAAGAGC 58.875 50.000 1.41 0.00 0.00 4.09
29 30 3.372954 CCTCCTATTGACGTAAAGAGCG 58.627 50.000 1.41 0.00 0.00 5.03
30 31 3.181489 CCTCCTATTGACGTAAAGAGCGT 60.181 47.826 1.41 0.00 45.86 5.07
39 40 4.030134 ACGTAAAGAGCGTCAATAGGAG 57.970 45.455 0.00 0.00 38.23 3.69
40 41 2.789893 CGTAAAGAGCGTCAATAGGAGC 59.210 50.000 0.00 0.00 0.00 4.70
41 42 3.489398 CGTAAAGAGCGTCAATAGGAGCT 60.489 47.826 0.00 0.00 43.33 4.09
44 45 2.901975 AGCGTCAATAGGAGCTCCA 58.098 52.632 33.90 20.05 38.89 3.86
45 46 1.418334 AGCGTCAATAGGAGCTCCAT 58.582 50.000 33.90 21.33 38.89 3.41
46 47 2.598565 AGCGTCAATAGGAGCTCCATA 58.401 47.619 33.90 22.03 38.89 2.74
47 48 2.560542 AGCGTCAATAGGAGCTCCATAG 59.439 50.000 33.90 19.82 38.89 2.23
48 49 2.558795 GCGTCAATAGGAGCTCCATAGA 59.441 50.000 33.90 21.68 38.89 1.98
49 50 3.005897 GCGTCAATAGGAGCTCCATAGAA 59.994 47.826 33.90 13.84 38.89 2.10
50 51 4.501571 GCGTCAATAGGAGCTCCATAGAAA 60.502 45.833 33.90 12.21 38.89 2.52
51 52 4.985409 CGTCAATAGGAGCTCCATAGAAAC 59.015 45.833 33.90 21.23 38.89 2.78
52 53 4.985409 GTCAATAGGAGCTCCATAGAAACG 59.015 45.833 33.90 13.54 38.89 3.60
53 54 4.893524 TCAATAGGAGCTCCATAGAAACGA 59.106 41.667 33.90 15.52 38.89 3.85
54 55 5.362717 TCAATAGGAGCTCCATAGAAACGAA 59.637 40.000 33.90 6.28 38.89 3.85
55 56 3.810310 AGGAGCTCCATAGAAACGAAG 57.190 47.619 33.90 0.00 38.89 3.79
56 57 2.432510 AGGAGCTCCATAGAAACGAAGG 59.567 50.000 33.90 0.00 38.89 3.46
57 58 2.483889 GGAGCTCCATAGAAACGAAGGG 60.484 54.545 28.43 0.00 35.64 3.95
58 59 1.134371 AGCTCCATAGAAACGAAGGGC 60.134 52.381 0.00 0.00 0.00 5.19
60 61 0.461339 TCCATAGAAACGAAGGGCGC 60.461 55.000 0.00 0.00 46.04 6.53
61 62 1.436983 CCATAGAAACGAAGGGCGCC 61.437 60.000 21.18 21.18 46.04 6.53
62 63 0.742990 CATAGAAACGAAGGGCGCCA 60.743 55.000 30.85 2.88 46.04 5.69
63 64 0.035820 ATAGAAACGAAGGGCGCCAA 60.036 50.000 30.85 0.00 46.04 4.52
64 65 0.672401 TAGAAACGAAGGGCGCCAAG 60.672 55.000 30.85 17.91 46.04 3.61
65 66 3.610791 GAAACGAAGGGCGCCAAGC 62.611 63.158 30.85 15.19 46.04 4.01
77 78 2.863739 GCGCCAAGCTAAAGTTTTAGG 58.136 47.619 12.23 0.08 44.04 2.69
78 79 2.415491 GCGCCAAGCTAAAGTTTTAGGG 60.415 50.000 12.23 7.20 44.04 3.53
79 80 2.817844 CGCCAAGCTAAAGTTTTAGGGT 59.182 45.455 12.23 0.00 40.31 4.34
80 81 3.254903 CGCCAAGCTAAAGTTTTAGGGTT 59.745 43.478 12.23 4.20 40.31 4.11
81 82 4.261867 CGCCAAGCTAAAGTTTTAGGGTTT 60.262 41.667 12.23 0.00 40.31 3.27
82 83 4.988540 GCCAAGCTAAAGTTTTAGGGTTTG 59.011 41.667 12.23 4.46 40.31 2.93
83 84 5.452776 GCCAAGCTAAAGTTTTAGGGTTTGT 60.453 40.000 12.23 0.00 40.31 2.83
84 85 6.213677 CCAAGCTAAAGTTTTAGGGTTTGTC 58.786 40.000 12.23 0.00 40.31 3.18
85 86 6.040504 CCAAGCTAAAGTTTTAGGGTTTGTCT 59.959 38.462 12.23 0.00 40.31 3.41
86 87 7.229907 CCAAGCTAAAGTTTTAGGGTTTGTCTA 59.770 37.037 12.23 0.00 40.31 2.59
87 88 7.981102 AGCTAAAGTTTTAGGGTTTGTCTAG 57.019 36.000 12.23 0.00 40.31 2.43
88 89 6.940867 AGCTAAAGTTTTAGGGTTTGTCTAGG 59.059 38.462 12.23 0.00 40.31 3.02
89 90 6.938596 GCTAAAGTTTTAGGGTTTGTCTAGGA 59.061 38.462 12.23 0.00 40.31 2.94
90 91 7.094890 GCTAAAGTTTTAGGGTTTGTCTAGGAC 60.095 40.741 12.23 0.00 40.31 3.85
91 92 5.899631 AGTTTTAGGGTTTGTCTAGGACA 57.100 39.130 0.00 0.00 41.09 4.02
92 93 5.618236 AGTTTTAGGGTTTGTCTAGGACAC 58.382 41.667 0.00 0.00 42.60 3.67
93 94 5.131475 AGTTTTAGGGTTTGTCTAGGACACA 59.869 40.000 0.00 0.00 42.60 3.72
94 95 5.836024 TTTAGGGTTTGTCTAGGACACAT 57.164 39.130 0.00 0.00 42.60 3.21
95 96 5.836024 TTAGGGTTTGTCTAGGACACATT 57.164 39.130 0.00 0.00 42.60 2.71
96 97 4.724279 AGGGTTTGTCTAGGACACATTT 57.276 40.909 0.00 0.00 42.60 2.32
97 98 5.836024 AGGGTTTGTCTAGGACACATTTA 57.164 39.130 0.00 0.00 42.60 1.40
98 99 6.195600 AGGGTTTGTCTAGGACACATTTAA 57.804 37.500 0.00 0.00 42.60 1.52
99 100 6.002082 AGGGTTTGTCTAGGACACATTTAAC 58.998 40.000 0.00 2.54 42.60 2.01
100 101 5.182570 GGGTTTGTCTAGGACACATTTAACC 59.817 44.000 16.52 16.52 42.60 2.85
101 102 6.002082 GGTTTGTCTAGGACACATTTAACCT 58.998 40.000 17.09 0.00 42.60 3.50
102 103 6.489022 GGTTTGTCTAGGACACATTTAACCTT 59.511 38.462 17.09 0.00 42.60 3.50
103 104 7.360361 GTTTGTCTAGGACACATTTAACCTTG 58.640 38.462 0.00 0.00 42.60 3.61
104 105 6.182507 TGTCTAGGACACATTTAACCTTGT 57.817 37.500 0.00 0.00 37.67 3.16
105 106 5.995282 TGTCTAGGACACATTTAACCTTGTG 59.005 40.000 9.64 9.64 46.76 3.33
113 114 6.817765 CACATTTAACCTTGTGTCCACTAT 57.182 37.500 0.00 0.00 38.69 2.12
114 115 6.611381 CACATTTAACCTTGTGTCCACTATG 58.389 40.000 0.00 0.00 38.69 2.23
115 116 6.206634 CACATTTAACCTTGTGTCCACTATGT 59.793 38.462 0.00 0.00 38.69 2.29
116 117 6.775629 ACATTTAACCTTGTGTCCACTATGTT 59.224 34.615 7.41 7.41 32.33 2.71
117 118 7.286775 ACATTTAACCTTGTGTCCACTATGTTT 59.713 33.333 7.53 0.00 30.87 2.83
118 119 6.627395 TTAACCTTGTGTCCACTATGTTTG 57.373 37.500 7.53 0.00 30.87 2.93
119 120 4.164843 ACCTTGTGTCCACTATGTTTGT 57.835 40.909 0.00 0.00 0.00 2.83
120 121 3.882888 ACCTTGTGTCCACTATGTTTGTG 59.117 43.478 0.00 0.00 35.39 3.33
134 135 8.967218 CACTATGTTTGTGGTCTATTTGTTTTG 58.033 33.333 0.00 0.00 0.00 2.44
135 136 8.691797 ACTATGTTTGTGGTCTATTTGTTTTGT 58.308 29.630 0.00 0.00 0.00 2.83
136 137 9.528018 CTATGTTTGTGGTCTATTTGTTTTGTT 57.472 29.630 0.00 0.00 0.00 2.83
137 138 8.785329 ATGTTTGTGGTCTATTTGTTTTGTTT 57.215 26.923 0.00 0.00 0.00 2.83
138 139 8.023050 TGTTTGTGGTCTATTTGTTTTGTTTG 57.977 30.769 0.00 0.00 0.00 2.93
139 140 7.872993 TGTTTGTGGTCTATTTGTTTTGTTTGA 59.127 29.630 0.00 0.00 0.00 2.69
140 141 8.379902 GTTTGTGGTCTATTTGTTTTGTTTGAG 58.620 33.333 0.00 0.00 0.00 3.02
141 142 6.568869 TGTGGTCTATTTGTTTTGTTTGAGG 58.431 36.000 0.00 0.00 0.00 3.86
142 143 6.153680 TGTGGTCTATTTGTTTTGTTTGAGGT 59.846 34.615 0.00 0.00 0.00 3.85
143 144 7.039270 GTGGTCTATTTGTTTTGTTTGAGGTT 58.961 34.615 0.00 0.00 0.00 3.50
144 145 7.547722 GTGGTCTATTTGTTTTGTTTGAGGTTT 59.452 33.333 0.00 0.00 0.00 3.27
145 146 8.097662 TGGTCTATTTGTTTTGTTTGAGGTTTT 58.902 29.630 0.00 0.00 0.00 2.43
146 147 8.941977 GGTCTATTTGTTTTGTTTGAGGTTTTT 58.058 29.630 0.00 0.00 0.00 1.94
178 179 9.743057 TCTTTGTTGTTGTGTTATTTATGGAAG 57.257 29.630 0.00 0.00 0.00 3.46
179 180 9.528018 CTTTGTTGTTGTGTTATTTATGGAAGT 57.472 29.630 0.00 0.00 0.00 3.01
180 181 9.877178 TTTGTTGTTGTGTTATTTATGGAAGTT 57.123 25.926 0.00 0.00 0.00 2.66
181 182 9.877178 TTGTTGTTGTGTTATTTATGGAAGTTT 57.123 25.926 0.00 0.00 0.00 2.66
194 195 8.506168 TTTATGGAAGTTTAGATGTGACATCC 57.494 34.615 21.05 6.31 33.11 3.51
195 196 5.762179 TGGAAGTTTAGATGTGACATCCT 57.238 39.130 21.05 8.88 33.54 3.24
196 197 6.126863 TGGAAGTTTAGATGTGACATCCTT 57.873 37.500 21.05 16.28 33.54 3.36
197 198 7.252612 TGGAAGTTTAGATGTGACATCCTTA 57.747 36.000 21.05 6.22 33.54 2.69
198 199 7.331026 TGGAAGTTTAGATGTGACATCCTTAG 58.669 38.462 21.05 0.00 33.54 2.18
199 200 7.180229 TGGAAGTTTAGATGTGACATCCTTAGA 59.820 37.037 21.05 1.88 33.54 2.10
200 201 8.041323 GGAAGTTTAGATGTGACATCCTTAGAA 58.959 37.037 21.05 7.16 30.62 2.10
201 202 9.436957 GAAGTTTAGATGTGACATCCTTAGAAA 57.563 33.333 21.05 11.24 0.00 2.52
202 203 9.793259 AAGTTTAGATGTGACATCCTTAGAAAA 57.207 29.630 21.05 9.88 0.00 2.29
203 204 9.220767 AGTTTAGATGTGACATCCTTAGAAAAC 57.779 33.333 21.05 18.54 0.00 2.43
204 205 8.999431 GTTTAGATGTGACATCCTTAGAAAACA 58.001 33.333 21.05 0.00 0.00 2.83
205 206 9.739276 TTTAGATGTGACATCCTTAGAAAACAT 57.261 29.630 21.05 1.75 0.00 2.71
206 207 7.856145 AGATGTGACATCCTTAGAAAACATC 57.144 36.000 21.05 0.00 41.77 3.06
207 208 7.628234 AGATGTGACATCCTTAGAAAACATCT 58.372 34.615 21.05 8.71 44.92 2.90
208 209 8.762645 AGATGTGACATCCTTAGAAAACATCTA 58.237 33.333 21.05 0.00 46.74 1.98
209 210 9.383519 GATGTGACATCCTTAGAAAACATCTAA 57.616 33.333 14.48 0.00 46.09 2.10
289 317 2.671130 TCATGAATGCTACACGCTCA 57.329 45.000 0.00 0.00 40.11 4.26
290 318 2.543641 TCATGAATGCTACACGCTCAG 58.456 47.619 0.00 0.00 40.11 3.35
301 329 4.434330 GCTACACGCTCAGTTCACAAATAC 60.434 45.833 0.00 0.00 35.14 1.89
308 336 5.091431 GCTCAGTTCACAAATACAAGATGC 58.909 41.667 0.00 0.00 0.00 3.91
312 340 8.389779 TCAGTTCACAAATACAAGATGCTTAA 57.610 30.769 0.00 0.00 0.00 1.85
349 377 8.909708 AATTAAATGAAATGTACATGGACACG 57.090 30.769 14.44 0.00 30.52 4.49
354 382 5.753744 TGAAATGTACATGGACACGTTTTC 58.246 37.500 21.30 21.30 34.77 2.29
355 383 5.297029 TGAAATGTACATGGACACGTTTTCA 59.703 36.000 24.72 24.72 35.23 2.69
370 398 6.862194 CACGTTTTCATGTGTTTGTTTATCC 58.138 36.000 0.00 0.00 35.45 2.59
371 399 6.473778 CACGTTTTCATGTGTTTGTTTATCCA 59.526 34.615 0.00 0.00 35.45 3.41
372 400 7.168972 CACGTTTTCATGTGTTTGTTTATCCAT 59.831 33.333 0.00 0.00 35.45 3.41
373 401 7.708752 ACGTTTTCATGTGTTTGTTTATCCATT 59.291 29.630 0.00 0.00 0.00 3.16
374 402 8.547069 CGTTTTCATGTGTTTGTTTATCCATTT 58.453 29.630 0.00 0.00 0.00 2.32
375 403 9.862585 GTTTTCATGTGTTTGTTTATCCATTTC 57.137 29.630 0.00 0.00 0.00 2.17
376 404 9.829507 TTTTCATGTGTTTGTTTATCCATTTCT 57.170 25.926 0.00 0.00 0.00 2.52
377 405 8.815141 TTCATGTGTTTGTTTATCCATTTCTG 57.185 30.769 0.00 0.00 0.00 3.02
378 406 7.950512 TCATGTGTTTGTTTATCCATTTCTGT 58.049 30.769 0.00 0.00 0.00 3.41
390 418 9.699410 TTTATCCATTTCTGTCATATGTCCTTT 57.301 29.630 1.90 0.00 0.00 3.11
397 425 5.359756 TCTGTCATATGTCCTTTGAATCGG 58.640 41.667 1.90 0.00 0.00 4.18
400 428 5.759763 TGTCATATGTCCTTTGAATCGGATG 59.240 40.000 1.90 0.00 0.00 3.51
401 429 4.756642 TCATATGTCCTTTGAATCGGATGC 59.243 41.667 1.90 0.00 0.00 3.91
405 433 3.876914 TGTCCTTTGAATCGGATGCATAC 59.123 43.478 0.00 0.00 0.00 2.39
407 435 4.024556 GTCCTTTGAATCGGATGCATACAG 60.025 45.833 10.18 1.94 0.00 2.74
411 439 3.457234 TGAATCGGATGCATACAGACAC 58.543 45.455 10.18 6.04 0.00 3.67
412 440 2.140065 ATCGGATGCATACAGACACG 57.860 50.000 10.18 1.91 0.00 4.49
413 441 0.815095 TCGGATGCATACAGACACGT 59.185 50.000 10.18 0.00 0.00 4.49
414 442 1.203758 TCGGATGCATACAGACACGTT 59.796 47.619 10.18 0.00 0.00 3.99
415 443 1.999735 CGGATGCATACAGACACGTTT 59.000 47.619 10.18 0.00 0.00 3.60
416 444 2.415168 CGGATGCATACAGACACGTTTT 59.585 45.455 10.18 0.00 0.00 2.43
417 445 3.615056 CGGATGCATACAGACACGTTTTA 59.385 43.478 10.18 0.00 0.00 1.52
418 446 4.259810 CGGATGCATACAGACACGTTTTAG 60.260 45.833 10.18 0.00 0.00 1.85
419 447 4.630069 GGATGCATACAGACACGTTTTAGT 59.370 41.667 3.28 0.00 0.00 2.24
420 448 4.983215 TGCATACAGACACGTTTTAGTG 57.017 40.909 0.00 0.00 46.83 2.74
432 460 6.476863 CACGTTTTAGTGTGTTTGTTCATC 57.523 37.500 0.00 0.00 37.35 2.92
433 461 5.454232 CACGTTTTAGTGTGTTTGTTCATCC 59.546 40.000 0.00 0.00 37.35 3.51
434 462 5.124138 ACGTTTTAGTGTGTTTGTTCATCCA 59.876 36.000 0.00 0.00 0.00 3.41
435 463 6.183360 ACGTTTTAGTGTGTTTGTTCATCCAT 60.183 34.615 0.00 0.00 0.00 3.41
436 464 6.695278 CGTTTTAGTGTGTTTGTTCATCCATT 59.305 34.615 0.00 0.00 0.00 3.16
437 465 7.221838 CGTTTTAGTGTGTTTGTTCATCCATTT 59.778 33.333 0.00 0.00 0.00 2.32
438 466 8.878769 GTTTTAGTGTGTTTGTTCATCCATTTT 58.121 29.630 0.00 0.00 0.00 1.82
442 470 8.816640 AGTGTGTTTGTTCATCCATTTTAATC 57.183 30.769 0.00 0.00 0.00 1.75
443 471 7.872483 AGTGTGTTTGTTCATCCATTTTAATCC 59.128 33.333 0.00 0.00 0.00 3.01
444 472 6.865726 TGTGTTTGTTCATCCATTTTAATCCG 59.134 34.615 0.00 0.00 0.00 4.18
445 473 6.866248 GTGTTTGTTCATCCATTTTAATCCGT 59.134 34.615 0.00 0.00 0.00 4.69
446 474 8.024285 GTGTTTGTTCATCCATTTTAATCCGTA 58.976 33.333 0.00 0.00 0.00 4.02
447 475 8.024285 TGTTTGTTCATCCATTTTAATCCGTAC 58.976 33.333 0.00 0.00 0.00 3.67
448 476 7.689446 TTGTTCATCCATTTTAATCCGTACA 57.311 32.000 0.00 0.00 0.00 2.90
449 477 7.873719 TGTTCATCCATTTTAATCCGTACAT 57.126 32.000 0.00 0.00 0.00 2.29
450 478 8.966069 TGTTCATCCATTTTAATCCGTACATA 57.034 30.769 0.00 0.00 0.00 2.29
451 479 9.567776 TGTTCATCCATTTTAATCCGTACATAT 57.432 29.630 0.00 0.00 0.00 1.78
491 519 8.755696 TGCAAAACATCTTATATTTGTGAACC 57.244 30.769 0.00 0.00 35.68 3.62
492 520 8.584157 TGCAAAACATCTTATATTTGTGAACCT 58.416 29.630 0.00 0.00 35.68 3.50
510 538 7.844779 TGTGAACCTAGGGAGTATTAGAGATTT 59.155 37.037 14.81 0.00 0.00 2.17
513 541 8.855804 AACCTAGGGAGTATTAGAGATTTTCA 57.144 34.615 14.81 0.00 0.00 2.69
515 543 9.280456 ACCTAGGGAGTATTAGAGATTTTCAAA 57.720 33.333 14.81 0.00 0.00 2.69
564 945 3.615709 AAAAAGGCAGCCCGGTGC 61.616 61.111 8.22 10.35 43.19 5.01
565 946 4.912395 AAAAGGCAGCCCGGTGCA 62.912 61.111 19.47 0.00 45.93 4.57
566 947 4.684134 AAAGGCAGCCCGGTGCAT 62.684 61.111 19.47 10.67 45.93 3.96
569 950 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
570 951 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
571 952 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
572 953 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
573 954 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
574 955 2.586079 CCCGGTGCATGTAGCTCG 60.586 66.667 11.25 3.20 45.94 5.03
576 957 2.586079 CGGTGCATGTAGCTCGGG 60.586 66.667 11.25 0.00 45.94 5.14
577 958 2.897350 GGTGCATGTAGCTCGGGC 60.897 66.667 0.00 0.00 45.94 6.13
653 1047 1.228124 CTTCAGTTCCAACGCCCCA 60.228 57.895 0.00 0.00 0.00 4.96
677 1071 3.684130 GCTTGGAATCTTCTTCCTCCCTC 60.684 52.174 5.66 0.00 39.31 4.30
801 1195 1.666209 CCTTGCCCCAATGTTAGCCG 61.666 60.000 0.00 0.00 0.00 5.52
820 1214 3.558505 CCGCTGATCAGACTTTGTTTTG 58.441 45.455 27.04 0.00 0.00 2.44
850 1244 3.083293 GACGGACCTCCCTATACTGATC 58.917 54.545 0.00 0.00 0.00 2.92
870 1264 5.530171 TGATCCCTATATATAAGACCGCGAC 59.470 44.000 8.23 0.40 0.00 5.19
938 1332 2.428403 GCTAGCTAGCTCGCTCGC 60.428 66.667 33.71 18.06 45.62 5.03
1007 1402 3.243336 GTCGAAGTAGCAAGATGTCGTT 58.757 45.455 0.00 0.00 0.00 3.85
1260 1655 1.427368 TGGGGCTACAACATGTCCTTT 59.573 47.619 0.00 0.00 0.00 3.11
1704 2970 2.680370 GGAGAGGTTCCCGCCCAAT 61.680 63.158 0.00 0.00 40.37 3.16
2525 4008 8.593945 ATTGGAGTTTGCTTTTATCCATCTTA 57.406 30.769 0.00 0.00 39.68 2.10
2600 4083 2.034076 CGACACTTGCTTTTTGTACGC 58.966 47.619 0.00 0.00 0.00 4.42
2763 4425 8.854614 AGATTGAACATTACCAAGCCTATATC 57.145 34.615 0.00 0.00 29.75 1.63
2789 4451 2.806608 AGCACCAACTTTCAGCAATG 57.193 45.000 0.00 0.00 0.00 2.82
2806 4468 3.365868 GCAATGTGTCATCGCAACCTTTA 60.366 43.478 0.00 0.00 37.62 1.85
2821 4484 8.020819 TCGCAACCTTTATTTTCAAGTTAGATG 58.979 33.333 0.00 0.00 0.00 2.90
2850 4514 1.952296 GCCATCATCATTGGTCACTCC 59.048 52.381 0.00 0.00 36.57 3.85
2851 4515 2.422519 GCCATCATCATTGGTCACTCCT 60.423 50.000 0.00 0.00 36.57 3.69
2870 4534 2.883386 CCTCCTAGGCATTGCTTTGATC 59.117 50.000 2.96 0.00 0.00 2.92
2875 4539 7.078249 TCCTAGGCATTGCTTTGATCTTATA 57.922 36.000 2.96 0.00 0.00 0.98
2884 4548 8.965172 CATTGCTTTGATCTTATATGACTTTGC 58.035 33.333 0.00 0.00 0.00 3.68
2903 4567 4.782019 TGCTTTTATGTTGGTGTGATCC 57.218 40.909 0.00 0.00 0.00 3.36
2919 4583 1.100463 ATCCTTTGTGTGTGTGCGCA 61.100 50.000 5.66 5.66 0.00 6.09
2942 4606 2.097299 GCATTTGTGTTGATTGTGTGCG 60.097 45.455 0.00 0.00 0.00 5.34
2957 4621 3.179830 GTGTGCGTTCTAGTCATGTAGG 58.820 50.000 0.00 0.00 0.00 3.18
2963 4627 4.202121 GCGTTCTAGTCATGTAGGGATGAA 60.202 45.833 0.00 0.00 34.11 2.57
2965 4629 5.923114 CGTTCTAGTCATGTAGGGATGAATG 59.077 44.000 0.00 0.00 34.11 2.67
2966 4630 5.474578 TCTAGTCATGTAGGGATGAATGC 57.525 43.478 0.00 0.00 34.11 3.56
2967 4631 4.901250 TCTAGTCATGTAGGGATGAATGCA 59.099 41.667 0.00 0.00 34.11 3.96
2968 4632 4.719026 AGTCATGTAGGGATGAATGCAT 57.281 40.909 0.00 0.00 34.11 3.96
2969 4633 4.395625 AGTCATGTAGGGATGAATGCATG 58.604 43.478 0.00 0.00 39.86 4.06
2970 4634 4.103627 AGTCATGTAGGGATGAATGCATGA 59.896 41.667 0.00 2.45 43.38 3.07
2971 4635 5.008331 GTCATGTAGGGATGAATGCATGAT 58.992 41.667 0.00 0.00 45.84 2.45
2972 4636 5.123502 GTCATGTAGGGATGAATGCATGATC 59.876 44.000 0.00 5.15 45.84 2.92
2973 4637 4.710313 TGTAGGGATGAATGCATGATCA 57.290 40.909 16.83 11.32 34.11 2.92
2974 4638 5.251182 TGTAGGGATGAATGCATGATCAT 57.749 39.130 12.65 12.65 38.93 2.45
2975 4639 5.637127 TGTAGGGATGAATGCATGATCATT 58.363 37.500 13.74 0.00 36.45 2.57
2976 4640 6.072649 TGTAGGGATGAATGCATGATCATTT 58.927 36.000 13.74 0.00 36.45 2.32
2977 4641 7.232910 TGTAGGGATGAATGCATGATCATTTA 58.767 34.615 13.74 0.00 36.45 1.40
2978 4642 7.891712 TGTAGGGATGAATGCATGATCATTTAT 59.108 33.333 13.74 0.38 36.45 1.40
2979 4643 7.170393 AGGGATGAATGCATGATCATTTATG 57.830 36.000 13.74 0.00 36.45 1.90
2980 4644 6.724441 AGGGATGAATGCATGATCATTTATGT 59.276 34.615 13.74 0.00 36.45 2.29
2981 4645 6.811665 GGGATGAATGCATGATCATTTATGTG 59.188 38.462 13.74 0.00 36.45 3.21
2982 4646 6.310467 GGATGAATGCATGATCATTTATGTGC 59.690 38.462 13.74 7.64 36.45 4.57
2983 4647 6.150396 TGAATGCATGATCATTTATGTGCA 57.850 33.333 18.75 18.75 45.28 4.57
2984 4648 5.980715 TGAATGCATGATCATTTATGTGCAC 59.019 36.000 18.82 10.75 44.20 4.57
2985 4649 4.310357 TGCATGATCATTTATGTGCACC 57.690 40.909 15.69 0.00 37.63 5.01
2986 4650 3.068448 TGCATGATCATTTATGTGCACCC 59.932 43.478 15.69 0.00 37.63 4.61
2987 4651 3.553508 GCATGATCATTTATGTGCACCCC 60.554 47.826 15.69 0.00 33.09 4.95
2988 4652 2.296792 TGATCATTTATGTGCACCCCG 58.703 47.619 15.69 0.00 0.00 5.73
2989 4653 1.001378 GATCATTTATGTGCACCCCGC 60.001 52.381 15.69 0.00 42.89 6.13
3022 4686 1.723220 GGTGAAAGCCTAGGTTCGAC 58.277 55.000 11.31 8.04 0.00 4.20
3041 4705 1.191535 CCGGAGTTGGTCATACCTGA 58.808 55.000 0.00 0.00 39.58 3.86
3042 4706 1.553248 CCGGAGTTGGTCATACCTGAA 59.447 52.381 0.00 0.00 39.58 3.02
3048 4712 4.998051 AGTTGGTCATACCTGAAAATGGT 58.002 39.130 0.00 0.00 39.58 3.55
3183 9006 2.052782 ACTTGAGCGTTGTTCCCTTT 57.947 45.000 0.00 0.00 0.00 3.11
3297 9120 3.245371 TGGATCTGATTGCTTTGGGACTT 60.245 43.478 0.00 0.00 0.00 3.01
3298 9121 3.766051 GGATCTGATTGCTTTGGGACTTT 59.234 43.478 0.00 0.00 0.00 2.66
3299 9122 4.221482 GGATCTGATTGCTTTGGGACTTTT 59.779 41.667 0.00 0.00 0.00 2.27
3300 9123 5.279657 GGATCTGATTGCTTTGGGACTTTTT 60.280 40.000 0.00 0.00 0.00 1.94
3301 9124 5.200368 TCTGATTGCTTTGGGACTTTTTC 57.800 39.130 0.00 0.00 0.00 2.29
3386 9215 0.610509 TGTTGGTGTTGGCTGTGTGT 60.611 50.000 0.00 0.00 0.00 3.72
3401 9230 4.811024 GCTGTGTGTATCTTAGCTATGCAA 59.189 41.667 0.00 0.00 0.00 4.08
3406 9235 5.059833 GTGTATCTTAGCTATGCAAAGGCT 58.940 41.667 14.13 14.13 41.91 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.190313 CAATAGGAGGCTGCCGCA 59.810 61.111 23.74 4.75 38.10 5.69
2 3 1.592669 CGTCAATAGGAGGCTGCCG 60.593 63.158 13.96 0.00 0.00 5.69
6 7 3.181474 GCTCTTTACGTCAATAGGAGGCT 60.181 47.826 0.00 0.00 34.76 4.58
8 9 3.181489 ACGCTCTTTACGTCAATAGGAGG 60.181 47.826 0.00 0.00 40.28 4.30
9 10 4.030134 ACGCTCTTTACGTCAATAGGAG 57.970 45.455 0.00 0.00 40.28 3.69
19 20 2.789893 GCTCCTATTGACGCTCTTTACG 59.210 50.000 0.00 0.00 0.00 3.18
20 21 4.045783 GAGCTCCTATTGACGCTCTTTAC 58.954 47.826 0.87 0.00 39.31 2.01
21 22 3.068307 GGAGCTCCTATTGACGCTCTTTA 59.932 47.826 26.25 0.00 40.80 1.85
22 23 2.159028 GGAGCTCCTATTGACGCTCTTT 60.159 50.000 26.25 0.00 40.80 2.52
23 24 1.410882 GGAGCTCCTATTGACGCTCTT 59.589 52.381 26.25 0.00 40.80 2.85
24 25 1.036707 GGAGCTCCTATTGACGCTCT 58.963 55.000 26.25 0.00 40.80 4.09
25 26 0.747255 TGGAGCTCCTATTGACGCTC 59.253 55.000 32.28 2.75 40.53 5.03
26 27 1.418334 ATGGAGCTCCTATTGACGCT 58.582 50.000 32.28 4.24 36.82 5.07
27 28 2.558795 TCTATGGAGCTCCTATTGACGC 59.441 50.000 32.28 4.07 36.82 5.19
28 29 4.855715 TTCTATGGAGCTCCTATTGACG 57.144 45.455 32.28 13.87 36.82 4.35
29 30 4.985409 CGTTTCTATGGAGCTCCTATTGAC 59.015 45.833 32.28 20.81 36.82 3.18
30 31 4.893524 TCGTTTCTATGGAGCTCCTATTGA 59.106 41.667 32.28 23.85 36.82 2.57
31 32 5.201713 TCGTTTCTATGGAGCTCCTATTG 57.798 43.478 32.28 22.26 36.82 1.90
32 33 5.221541 CCTTCGTTTCTATGGAGCTCCTATT 60.222 44.000 32.28 19.31 36.82 1.73
33 34 4.282195 CCTTCGTTTCTATGGAGCTCCTAT 59.718 45.833 32.28 24.14 36.82 2.57
34 35 3.637229 CCTTCGTTTCTATGGAGCTCCTA 59.363 47.826 32.28 19.38 36.82 2.94
35 36 2.432510 CCTTCGTTTCTATGGAGCTCCT 59.567 50.000 32.28 20.00 36.82 3.69
36 37 2.483889 CCCTTCGTTTCTATGGAGCTCC 60.484 54.545 26.78 26.78 0.00 4.70
37 38 2.827652 CCCTTCGTTTCTATGGAGCTC 58.172 52.381 4.71 4.71 0.00 4.09
38 39 1.134371 GCCCTTCGTTTCTATGGAGCT 60.134 52.381 0.00 0.00 0.00 4.09
39 40 1.300481 GCCCTTCGTTTCTATGGAGC 58.700 55.000 0.00 0.00 0.00 4.70
40 41 1.571919 CGCCCTTCGTTTCTATGGAG 58.428 55.000 0.00 0.00 0.00 3.86
41 42 0.461339 GCGCCCTTCGTTTCTATGGA 60.461 55.000 0.00 0.00 41.07 3.41
42 43 1.436983 GGCGCCCTTCGTTTCTATGG 61.437 60.000 18.11 0.00 41.07 2.74
43 44 0.742990 TGGCGCCCTTCGTTTCTATG 60.743 55.000 26.77 0.00 41.07 2.23
44 45 0.035820 TTGGCGCCCTTCGTTTCTAT 60.036 50.000 26.77 0.00 41.07 1.98
45 46 0.672401 CTTGGCGCCCTTCGTTTCTA 60.672 55.000 26.77 0.00 41.07 2.10
46 47 1.966451 CTTGGCGCCCTTCGTTTCT 60.966 57.895 26.77 0.00 41.07 2.52
47 48 2.561373 CTTGGCGCCCTTCGTTTC 59.439 61.111 26.77 0.00 41.07 2.78
48 49 2.741486 TAGCTTGGCGCCCTTCGTTT 62.741 55.000 26.77 5.52 40.39 3.60
49 50 2.741486 TTAGCTTGGCGCCCTTCGTT 62.741 55.000 26.77 9.87 40.39 3.85
50 51 2.741486 TTTAGCTTGGCGCCCTTCGT 62.741 55.000 26.77 7.35 40.39 3.85
51 52 1.982073 CTTTAGCTTGGCGCCCTTCG 61.982 60.000 26.77 10.56 40.39 3.79
52 53 0.960861 ACTTTAGCTTGGCGCCCTTC 60.961 55.000 26.77 12.58 40.39 3.46
53 54 0.539669 AACTTTAGCTTGGCGCCCTT 60.540 50.000 26.77 9.23 40.39 3.95
54 55 0.539669 AAACTTTAGCTTGGCGCCCT 60.540 50.000 26.77 16.82 40.39 5.19
55 56 0.317160 AAAACTTTAGCTTGGCGCCC 59.683 50.000 26.77 8.84 40.39 6.13
56 57 2.415491 CCTAAAACTTTAGCTTGGCGCC 60.415 50.000 22.73 22.73 38.99 6.53
57 58 2.415491 CCCTAAAACTTTAGCTTGGCGC 60.415 50.000 0.00 0.00 38.99 6.53
58 59 2.817844 ACCCTAAAACTTTAGCTTGGCG 59.182 45.455 0.00 0.00 38.99 5.69
59 60 4.866508 AACCCTAAAACTTTAGCTTGGC 57.133 40.909 0.00 0.00 38.99 4.52
60 61 6.040504 AGACAAACCCTAAAACTTTAGCTTGG 59.959 38.462 0.00 9.65 38.99 3.61
61 62 7.039313 AGACAAACCCTAAAACTTTAGCTTG 57.961 36.000 0.00 8.61 38.99 4.01
62 63 7.447545 CCTAGACAAACCCTAAAACTTTAGCTT 59.552 37.037 0.00 0.00 38.99 3.74
63 64 6.940867 CCTAGACAAACCCTAAAACTTTAGCT 59.059 38.462 4.03 0.00 38.99 3.32
64 65 6.938596 TCCTAGACAAACCCTAAAACTTTAGC 59.061 38.462 4.03 0.00 38.99 3.09
65 66 7.935210 TGTCCTAGACAAACCCTAAAACTTTAG 59.065 37.037 0.00 2.73 39.78 1.85
66 67 7.716560 GTGTCCTAGACAAACCCTAAAACTTTA 59.283 37.037 0.00 0.00 44.49 1.85
67 68 6.544931 GTGTCCTAGACAAACCCTAAAACTTT 59.455 38.462 0.00 0.00 44.49 2.66
68 69 6.060136 GTGTCCTAGACAAACCCTAAAACTT 58.940 40.000 0.00 0.00 44.49 2.66
69 70 5.131475 TGTGTCCTAGACAAACCCTAAAACT 59.869 40.000 0.00 0.00 44.49 2.66
70 71 5.370679 TGTGTCCTAGACAAACCCTAAAAC 58.629 41.667 0.00 0.00 44.49 2.43
71 72 5.633655 TGTGTCCTAGACAAACCCTAAAA 57.366 39.130 0.00 0.00 44.49 1.52
72 73 5.836024 ATGTGTCCTAGACAAACCCTAAA 57.164 39.130 0.00 0.00 44.49 1.85
73 74 5.836024 AATGTGTCCTAGACAAACCCTAA 57.164 39.130 0.00 0.00 44.49 2.69
74 75 5.836024 AAATGTGTCCTAGACAAACCCTA 57.164 39.130 0.00 0.00 44.49 3.53
75 76 4.724279 AAATGTGTCCTAGACAAACCCT 57.276 40.909 0.00 0.00 44.49 4.34
76 77 5.182570 GGTTAAATGTGTCCTAGACAAACCC 59.817 44.000 13.62 0.00 44.49 4.11
77 78 6.002082 AGGTTAAATGTGTCCTAGACAAACC 58.998 40.000 15.61 15.61 44.49 3.27
78 79 7.012989 ACAAGGTTAAATGTGTCCTAGACAAAC 59.987 37.037 0.00 0.45 44.49 2.93
79 80 7.012894 CACAAGGTTAAATGTGTCCTAGACAAA 59.987 37.037 0.00 0.00 44.49 2.83
80 81 6.485313 CACAAGGTTAAATGTGTCCTAGACAA 59.515 38.462 0.00 0.00 44.49 3.18
81 82 5.995282 CACAAGGTTAAATGTGTCCTAGACA 59.005 40.000 8.43 0.00 41.51 3.41
82 83 6.481954 CACAAGGTTAAATGTGTCCTAGAC 57.518 41.667 8.43 0.00 41.51 2.59
91 92 6.303839 ACATAGTGGACACAAGGTTAAATGT 58.696 36.000 5.14 0.00 0.00 2.71
92 93 6.817765 ACATAGTGGACACAAGGTTAAATG 57.182 37.500 5.14 0.00 0.00 2.32
93 94 7.286775 ACAAACATAGTGGACACAAGGTTAAAT 59.713 33.333 5.14 0.00 0.00 1.40
94 95 6.603997 ACAAACATAGTGGACACAAGGTTAAA 59.396 34.615 5.14 0.00 0.00 1.52
95 96 6.038825 CACAAACATAGTGGACACAAGGTTAA 59.961 38.462 5.14 0.00 33.43 2.01
96 97 5.529430 CACAAACATAGTGGACACAAGGTTA 59.471 40.000 5.14 0.00 33.43 2.85
97 98 4.338118 CACAAACATAGTGGACACAAGGTT 59.662 41.667 5.14 3.04 33.43 3.50
98 99 3.882888 CACAAACATAGTGGACACAAGGT 59.117 43.478 5.14 0.00 33.43 3.50
99 100 4.488126 CACAAACATAGTGGACACAAGG 57.512 45.455 5.14 0.00 33.43 3.61
108 109 8.967218 CAAAACAAATAGACCACAAACATAGTG 58.033 33.333 0.00 0.00 36.76 2.74
109 110 8.691797 ACAAAACAAATAGACCACAAACATAGT 58.308 29.630 0.00 0.00 0.00 2.12
110 111 9.528018 AACAAAACAAATAGACCACAAACATAG 57.472 29.630 0.00 0.00 0.00 2.23
111 112 9.877178 AAACAAAACAAATAGACCACAAACATA 57.123 25.926 0.00 0.00 0.00 2.29
112 113 8.663911 CAAACAAAACAAATAGACCACAAACAT 58.336 29.630 0.00 0.00 0.00 2.71
113 114 7.872993 TCAAACAAAACAAATAGACCACAAACA 59.127 29.630 0.00 0.00 0.00 2.83
114 115 8.245701 TCAAACAAAACAAATAGACCACAAAC 57.754 30.769 0.00 0.00 0.00 2.93
115 116 7.547370 CCTCAAACAAAACAAATAGACCACAAA 59.453 33.333 0.00 0.00 0.00 2.83
116 117 7.038659 CCTCAAACAAAACAAATAGACCACAA 58.961 34.615 0.00 0.00 0.00 3.33
117 118 6.153680 ACCTCAAACAAAACAAATAGACCACA 59.846 34.615 0.00 0.00 0.00 4.17
118 119 6.569780 ACCTCAAACAAAACAAATAGACCAC 58.430 36.000 0.00 0.00 0.00 4.16
119 120 6.783708 ACCTCAAACAAAACAAATAGACCA 57.216 33.333 0.00 0.00 0.00 4.02
120 121 8.487313 AAAACCTCAAACAAAACAAATAGACC 57.513 30.769 0.00 0.00 0.00 3.85
152 153 9.743057 CTTCCATAAATAACACAACAACAAAGA 57.257 29.630 0.00 0.00 0.00 2.52
153 154 9.528018 ACTTCCATAAATAACACAACAACAAAG 57.472 29.630 0.00 0.00 0.00 2.77
154 155 9.877178 AACTTCCATAAATAACACAACAACAAA 57.123 25.926 0.00 0.00 0.00 2.83
155 156 9.877178 AAACTTCCATAAATAACACAACAACAA 57.123 25.926 0.00 0.00 0.00 2.83
168 169 9.125026 GGATGTCACATCTAAACTTCCATAAAT 57.875 33.333 17.46 0.00 37.26 1.40
169 170 8.328758 AGGATGTCACATCTAAACTTCCATAAA 58.671 33.333 17.46 0.00 38.85 1.40
170 171 7.861629 AGGATGTCACATCTAAACTTCCATAA 58.138 34.615 17.46 0.00 38.85 1.90
171 172 7.437713 AGGATGTCACATCTAAACTTCCATA 57.562 36.000 17.46 0.00 38.85 2.74
172 173 6.319048 AGGATGTCACATCTAAACTTCCAT 57.681 37.500 17.46 0.00 38.85 3.41
173 174 5.762179 AGGATGTCACATCTAAACTTCCA 57.238 39.130 17.46 0.00 38.85 3.53
174 175 7.556844 TCTAAGGATGTCACATCTAAACTTCC 58.443 38.462 17.46 0.00 37.45 3.46
175 176 9.436957 TTTCTAAGGATGTCACATCTAAACTTC 57.563 33.333 17.46 0.00 0.00 3.01
176 177 9.793259 TTTTCTAAGGATGTCACATCTAAACTT 57.207 29.630 17.46 13.56 0.00 2.66
177 178 9.220767 GTTTTCTAAGGATGTCACATCTAAACT 57.779 33.333 17.46 3.19 0.00 2.66
178 179 8.999431 TGTTTTCTAAGGATGTCACATCTAAAC 58.001 33.333 17.46 15.71 0.00 2.01
179 180 9.739276 ATGTTTTCTAAGGATGTCACATCTAAA 57.261 29.630 17.46 7.88 0.00 1.85
180 181 9.383519 GATGTTTTCTAAGGATGTCACATCTAA 57.616 33.333 17.46 2.83 37.41 2.10
181 182 8.762645 AGATGTTTTCTAAGGATGTCACATCTA 58.237 33.333 17.46 2.37 44.89 1.98
182 183 7.628234 AGATGTTTTCTAAGGATGTCACATCT 58.372 34.615 17.46 1.18 42.98 2.90
183 184 7.856145 AGATGTTTTCTAAGGATGTCACATC 57.144 36.000 9.53 9.53 39.62 3.06
184 185 9.739276 TTTAGATGTTTTCTAAGGATGTCACAT 57.261 29.630 0.00 0.00 45.40 3.21
185 186 9.739276 ATTTAGATGTTTTCTAAGGATGTCACA 57.261 29.630 0.00 0.00 45.40 3.58
186 187 9.994432 CATTTAGATGTTTTCTAAGGATGTCAC 57.006 33.333 0.00 0.00 45.40 3.67
187 188 9.739276 ACATTTAGATGTTTTCTAAGGATGTCA 57.261 29.630 0.00 0.00 45.40 3.58
188 189 9.994432 CACATTTAGATGTTTTCTAAGGATGTC 57.006 33.333 0.00 0.00 45.40 3.06
189 190 9.739276 TCACATTTAGATGTTTTCTAAGGATGT 57.261 29.630 0.00 6.78 45.40 3.06
221 222 9.902196 ACGTTCGGAATAAACTTTTCAATTTAT 57.098 25.926 0.00 0.00 33.40 1.40
222 223 9.733219 AACGTTCGGAATAAACTTTTCAATTTA 57.267 25.926 0.00 0.00 0.00 1.40
223 224 8.637281 AACGTTCGGAATAAACTTTTCAATTT 57.363 26.923 0.00 0.00 0.00 1.82
224 225 7.380333 GGAACGTTCGGAATAAACTTTTCAATT 59.620 33.333 21.34 0.00 0.00 2.32
225 226 6.859508 GGAACGTTCGGAATAAACTTTTCAAT 59.140 34.615 21.34 0.00 0.00 2.57
226 227 6.183360 TGGAACGTTCGGAATAAACTTTTCAA 60.183 34.615 21.34 0.00 0.00 2.69
227 228 5.296283 TGGAACGTTCGGAATAAACTTTTCA 59.704 36.000 21.34 6.16 0.00 2.69
228 229 5.750650 TGGAACGTTCGGAATAAACTTTTC 58.249 37.500 21.34 3.62 0.00 2.29
229 230 5.754543 TGGAACGTTCGGAATAAACTTTT 57.245 34.783 21.34 0.00 0.00 2.27
230 231 5.952526 ATGGAACGTTCGGAATAAACTTT 57.047 34.783 21.34 0.00 0.00 2.66
231 232 5.239963 ACAATGGAACGTTCGGAATAAACTT 59.760 36.000 21.34 1.43 0.00 2.66
232 233 4.758165 ACAATGGAACGTTCGGAATAAACT 59.242 37.500 21.34 0.00 0.00 2.66
233 234 5.038247 ACAATGGAACGTTCGGAATAAAC 57.962 39.130 21.34 6.13 0.00 2.01
234 235 5.692613 AACAATGGAACGTTCGGAATAAA 57.307 34.783 21.34 2.21 0.00 1.40
283 311 4.377021 TCTTGTATTTGTGAACTGAGCGT 58.623 39.130 0.00 0.00 0.00 5.07
284 312 4.990543 TCTTGTATTTGTGAACTGAGCG 57.009 40.909 0.00 0.00 0.00 5.03
285 313 5.091431 GCATCTTGTATTTGTGAACTGAGC 58.909 41.667 0.00 0.00 0.00 4.26
323 351 9.352784 CGTGTCCATGTACATTTCATTTAATTT 57.647 29.630 5.37 0.00 0.00 1.82
324 352 8.519526 ACGTGTCCATGTACATTTCATTTAATT 58.480 29.630 5.37 0.00 0.00 1.40
325 353 8.050778 ACGTGTCCATGTACATTTCATTTAAT 57.949 30.769 5.37 0.00 0.00 1.40
326 354 7.441890 ACGTGTCCATGTACATTTCATTTAA 57.558 32.000 5.37 0.00 0.00 1.52
327 355 7.441890 AACGTGTCCATGTACATTTCATTTA 57.558 32.000 5.37 0.00 0.00 1.40
332 360 5.753744 TGAAAACGTGTCCATGTACATTTC 58.246 37.500 5.37 5.80 30.79 2.17
333 361 5.759506 TGAAAACGTGTCCATGTACATTT 57.240 34.783 5.37 0.00 0.00 2.32
340 368 3.624326 ACACATGAAAACGTGTCCATG 57.376 42.857 2.99 2.99 42.61 3.66
344 372 5.755330 AAACAAACACATGAAAACGTGTC 57.245 34.783 0.00 0.00 45.37 3.67
349 377 9.862585 GAAATGGATAAACAAACACATGAAAAC 57.137 29.630 0.00 0.00 0.00 2.43
354 382 7.866898 TGACAGAAATGGATAAACAAACACATG 59.133 33.333 0.00 0.00 0.00 3.21
355 383 7.950512 TGACAGAAATGGATAAACAAACACAT 58.049 30.769 0.00 0.00 0.00 3.21
362 390 8.274322 AGGACATATGACAGAAATGGATAAACA 58.726 33.333 10.38 0.00 0.00 2.83
365 393 9.123902 CAAAGGACATATGACAGAAATGGATAA 57.876 33.333 10.38 0.00 0.00 1.75
366 394 8.493607 TCAAAGGACATATGACAGAAATGGATA 58.506 33.333 10.38 0.00 0.00 2.59
367 395 7.348815 TCAAAGGACATATGACAGAAATGGAT 58.651 34.615 10.38 0.00 0.00 3.41
368 396 6.720309 TCAAAGGACATATGACAGAAATGGA 58.280 36.000 10.38 0.00 0.00 3.41
369 397 7.395190 TTCAAAGGACATATGACAGAAATGG 57.605 36.000 10.38 0.00 0.00 3.16
370 398 7.854422 CGATTCAAAGGACATATGACAGAAATG 59.146 37.037 10.38 0.28 0.00 2.32
371 399 7.012704 CCGATTCAAAGGACATATGACAGAAAT 59.987 37.037 10.38 0.74 0.00 2.17
372 400 6.316140 CCGATTCAAAGGACATATGACAGAAA 59.684 38.462 10.38 0.00 0.00 2.52
373 401 5.817296 CCGATTCAAAGGACATATGACAGAA 59.183 40.000 10.38 6.85 0.00 3.02
374 402 5.128663 TCCGATTCAAAGGACATATGACAGA 59.871 40.000 10.38 0.00 0.00 3.41
375 403 5.359756 TCCGATTCAAAGGACATATGACAG 58.640 41.667 10.38 0.00 0.00 3.51
376 404 5.351948 TCCGATTCAAAGGACATATGACA 57.648 39.130 10.38 0.00 0.00 3.58
377 405 5.334414 GCATCCGATTCAAAGGACATATGAC 60.334 44.000 10.38 2.65 39.66 3.06
378 406 4.756642 GCATCCGATTCAAAGGACATATGA 59.243 41.667 10.38 0.00 39.66 2.15
386 414 4.024556 GTCTGTATGCATCCGATTCAAAGG 60.025 45.833 0.19 0.00 0.00 3.11
390 418 3.457234 GTGTCTGTATGCATCCGATTCA 58.543 45.455 0.19 0.00 0.00 2.57
397 425 5.120208 ACACTAAAACGTGTCTGTATGCATC 59.880 40.000 0.19 0.00 44.32 3.91
400 428 4.210537 ACACACTAAAACGTGTCTGTATGC 59.789 41.667 0.00 0.00 45.74 3.14
401 429 5.900339 ACACACTAAAACGTGTCTGTATG 57.100 39.130 0.00 0.00 45.74 2.39
405 433 4.965062 ACAAACACACTAAAACGTGTCTG 58.035 39.130 0.00 0.00 45.74 3.51
407 435 5.383958 TGAACAAACACACTAAAACGTGTC 58.616 37.500 0.00 0.00 45.74 3.67
411 439 5.574082 TGGATGAACAAACACACTAAAACG 58.426 37.500 0.00 0.00 0.00 3.60
412 440 8.419076 AAATGGATGAACAAACACACTAAAAC 57.581 30.769 0.00 0.00 0.00 2.43
416 444 9.906660 GATTAAAATGGATGAACAAACACACTA 57.093 29.630 0.00 0.00 0.00 2.74
417 445 7.872483 GGATTAAAATGGATGAACAAACACACT 59.128 33.333 0.00 0.00 0.00 3.55
418 446 7.148820 CGGATTAAAATGGATGAACAAACACAC 60.149 37.037 0.00 0.00 0.00 3.82
419 447 6.865726 CGGATTAAAATGGATGAACAAACACA 59.134 34.615 0.00 0.00 0.00 3.72
420 448 6.866248 ACGGATTAAAATGGATGAACAAACAC 59.134 34.615 0.00 0.00 0.00 3.32
421 449 6.987386 ACGGATTAAAATGGATGAACAAACA 58.013 32.000 0.00 0.00 0.00 2.83
422 450 8.024285 TGTACGGATTAAAATGGATGAACAAAC 58.976 33.333 0.00 0.00 0.00 2.93
423 451 8.112016 TGTACGGATTAAAATGGATGAACAAA 57.888 30.769 0.00 0.00 0.00 2.83
424 452 7.689446 TGTACGGATTAAAATGGATGAACAA 57.311 32.000 0.00 0.00 0.00 2.83
425 453 7.873719 ATGTACGGATTAAAATGGATGAACA 57.126 32.000 0.00 0.00 0.00 3.18
549 930 4.684134 ATGCACCGGGCTGCCTTT 62.684 61.111 19.68 0.00 45.15 3.11
552 933 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
553 934 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
554 935 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
556 937 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
557 938 2.586079 CGAGCTACATGCACCGGG 60.586 66.667 6.32 0.00 45.94 5.73
558 939 2.586079 CCGAGCTACATGCACCGG 60.586 66.667 0.00 0.00 46.99 5.28
559 940 2.586079 CCCGAGCTACATGCACCG 60.586 66.667 0.00 0.00 45.94 4.94
560 941 2.897350 GCCCGAGCTACATGCACC 60.897 66.667 0.00 0.00 45.94 5.01
574 955 2.862674 TTATCGACCCGTGCAAGCCC 62.863 60.000 0.00 0.00 0.00 5.19
575 956 1.429148 CTTATCGACCCGTGCAAGCC 61.429 60.000 0.00 0.00 0.00 4.35
576 957 2.006772 CTTATCGACCCGTGCAAGC 58.993 57.895 0.00 0.00 0.00 4.01
577 958 0.739462 TGCTTATCGACCCGTGCAAG 60.739 55.000 0.00 0.00 0.00 4.01
578 959 0.739462 CTGCTTATCGACCCGTGCAA 60.739 55.000 0.00 0.00 0.00 4.08
579 960 1.153647 CTGCTTATCGACCCGTGCA 60.154 57.895 0.00 0.00 0.00 4.57
580 961 0.249489 ATCTGCTTATCGACCCGTGC 60.249 55.000 0.00 0.00 0.00 5.34
581 962 2.225068 AATCTGCTTATCGACCCGTG 57.775 50.000 0.00 0.00 0.00 4.94
582 963 2.957006 ACTAATCTGCTTATCGACCCGT 59.043 45.455 0.00 0.00 0.00 5.28
583 964 3.644884 ACTAATCTGCTTATCGACCCG 57.355 47.619 0.00 0.00 0.00 5.28
584 965 6.679327 AAAAACTAATCTGCTTATCGACCC 57.321 37.500 0.00 0.00 0.00 4.46
618 1012 7.037945 GGAACTGAAGGAAGGGCTATCTATATT 60.038 40.741 0.00 0.00 0.00 1.28
653 1047 3.372458 GGGAGGAAGAAGATTCCAAGCAT 60.372 47.826 9.20 0.00 41.00 3.79
677 1071 4.785453 GCTGGGGCTCGGAGTTGG 62.785 72.222 6.90 0.00 35.22 3.77
796 1190 1.550524 ACAAAGTCTGATCAGCGGCTA 59.449 47.619 18.36 0.00 0.00 3.93
801 1195 4.741676 CCAACAAAACAAAGTCTGATCAGC 59.258 41.667 18.36 12.81 0.00 4.26
820 1214 1.372623 GAGGTCCGTCGTGTCCAAC 60.373 63.158 0.00 0.00 0.00 3.77
850 1244 3.317430 GGGTCGCGGTCTTATATATAGGG 59.683 52.174 6.13 0.00 0.00 3.53
870 1264 2.540265 CTGGTGAAGCTATGCTAGGG 57.460 55.000 0.00 0.00 38.25 3.53
946 1340 2.289820 CTCGCTGCGGTTAGATAGTACA 59.710 50.000 23.03 0.00 0.00 2.90
983 1378 1.816835 ACATCTTGCTACTTCGACCGA 59.183 47.619 0.00 0.00 0.00 4.69
1007 1402 2.949909 ATGTTGTAGTCCGCGGCCA 61.950 57.895 23.51 11.50 0.00 5.36
1017 1412 2.178912 ACCCAACGGACATGTTGTAG 57.821 50.000 0.00 0.00 46.08 2.74
1704 2970 1.476891 GTGAGCATGAGGAGGACGTTA 59.523 52.381 0.00 0.00 0.00 3.18
2238 3720 1.206132 ACAATCACGTTCCAGCCGATA 59.794 47.619 0.00 0.00 0.00 2.92
2525 4008 4.832266 ACCACATTATTCCACAACACATGT 59.168 37.500 0.00 0.00 45.34 3.21
2600 4083 5.752892 AATCAAAGAGCAGTGATGCTATG 57.247 39.130 2.15 3.68 46.36 2.23
2623 4106 5.817816 GTGAATGTTGTATTCCCTCTCGAAT 59.182 40.000 0.00 0.00 36.45 3.34
2685 4172 8.299570 CAGTAAACTGAGAATTAGCAAAACCAT 58.700 33.333 3.99 0.00 46.59 3.55
2703 4190 8.511321 TGCGATTTATGAAAATGTCAGTAAACT 58.489 29.630 0.00 0.00 40.43 2.66
2782 4444 1.609932 GTTGCGATGACACATTGCTG 58.390 50.000 19.99 0.00 0.00 4.41
2789 4451 5.457140 TGAAAATAAAGGTTGCGATGACAC 58.543 37.500 0.00 0.00 0.00 3.67
2806 4468 6.860080 CACTCCATGCATCTAACTTGAAAAT 58.140 36.000 0.00 0.00 0.00 1.82
2831 4494 3.474600 GAGGAGTGACCAATGATGATGG 58.525 50.000 0.00 0.00 43.84 3.51
2839 4502 1.273838 TGCCTAGGAGGAGTGACCAAT 60.274 52.381 14.75 0.00 37.67 3.16
2850 4514 3.818180 AGATCAAAGCAATGCCTAGGAG 58.182 45.455 14.75 0.00 0.00 3.69
2851 4515 3.939740 AGATCAAAGCAATGCCTAGGA 57.060 42.857 14.75 0.00 0.00 2.94
2875 4539 5.984926 CACACCAACATAAAAGCAAAGTCAT 59.015 36.000 0.00 0.00 0.00 3.06
2884 4548 6.642131 CACAAAGGATCACACCAACATAAAAG 59.358 38.462 0.00 0.00 0.00 2.27
2896 4560 1.675483 GCACACACACAAAGGATCACA 59.325 47.619 0.00 0.00 0.00 3.58
2903 4567 3.981303 GTGCGCACACACACAAAG 58.019 55.556 34.52 0.00 46.61 2.77
2919 4583 3.114809 CACACAATCAACACAAATGCGT 58.885 40.909 0.00 0.00 0.00 5.24
2942 4606 5.698545 GCATTCATCCCTACATGACTAGAAC 59.301 44.000 0.00 0.00 32.28 3.01
2957 4621 6.310467 GCACATAAATGATCATGCATTCATCC 59.690 38.462 9.46 0.00 37.50 3.51
2963 4627 4.262292 GGGTGCACATAAATGATCATGCAT 60.262 41.667 20.43 9.05 44.20 3.96
2965 4629 3.553508 GGGGTGCACATAAATGATCATGC 60.554 47.826 20.43 9.37 0.00 4.06
2966 4630 3.304861 CGGGGTGCACATAAATGATCATG 60.305 47.826 20.43 0.09 0.00 3.07
2967 4631 2.886523 CGGGGTGCACATAAATGATCAT 59.113 45.455 20.43 1.18 0.00 2.45
2968 4632 2.296792 CGGGGTGCACATAAATGATCA 58.703 47.619 20.43 0.00 0.00 2.92
2969 4633 1.001378 GCGGGGTGCACATAAATGATC 60.001 52.381 20.43 0.00 45.45 2.92
2970 4634 1.032014 GCGGGGTGCACATAAATGAT 58.968 50.000 20.43 0.00 45.45 2.45
2971 4635 2.487918 GCGGGGTGCACATAAATGA 58.512 52.632 20.43 0.00 45.45 2.57
2989 4653 0.395862 TTCACCCCGGAGCTCTAGAG 60.396 60.000 15.85 15.85 0.00 2.43
3022 4686 1.191535 TCAGGTATGACCAACTCCGG 58.808 55.000 0.00 0.00 41.95 5.14
3069 8888 1.536766 CGAGCAATGCCTTCAACAAGA 59.463 47.619 0.00 0.00 0.00 3.02
3157 8976 2.717580 ACAACGCTCAAGTATCGTCA 57.282 45.000 0.00 0.00 35.18 4.35
3164 8983 1.947456 GAAAGGGAACAACGCTCAAGT 59.053 47.619 0.00 0.00 40.92 3.16
3183 9006 0.179059 TCAACAGCAACGCCTTCAGA 60.179 50.000 0.00 0.00 0.00 3.27
3386 9215 4.505566 CCCAGCCTTTGCATAGCTAAGATA 60.506 45.833 13.33 0.00 42.20 1.98
3401 9230 1.867595 ATAAGCCTGCACCCAGCCTT 61.868 55.000 0.00 0.00 44.83 4.35
3406 9235 1.078497 CACGATAAGCCTGCACCCA 60.078 57.895 0.00 0.00 0.00 4.51
3413 9242 6.407202 AGAAGATACAAAACACGATAAGCCT 58.593 36.000 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.