Multiple sequence alignment - TraesCS3A01G379800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G379800 chr3A 100.000 8713 0 0 1 8713 629226177 629217465 0.000000e+00 16090.0
1 TraesCS3A01G379800 chr3A 100.000 171 0 0 9039 9209 629217139 629216969 5.370000e-82 316.0
2 TraesCS3A01G379800 chr3A 88.889 72 7 1 5712 5783 1375732 1375662 4.580000e-13 87.9
3 TraesCS3A01G379800 chr3A 87.013 77 8 2 5712 5788 1375572 1375498 1.650000e-12 86.1
4 TraesCS3A01G379800 chr7D 94.242 3213 121 20 2614 5781 596615411 596612218 0.000000e+00 4850.0
5 TraesCS3A01G379800 chr7D 99.462 186 1 0 2429 2614 596615626 596615441 1.150000e-88 339.0
6 TraesCS3A01G379800 chr7A 92.126 3213 175 31 2614 5787 312559164 312555991 0.000000e+00 4460.0
7 TraesCS3A01G379800 chr7A 90.200 1796 107 26 4024 5783 312555994 312554232 0.000000e+00 2278.0
8 TraesCS3A01G379800 chr7A 98.396 187 2 1 2428 2614 312559379 312559194 2.480000e-85 327.0
9 TraesCS3A01G379800 chr7A 83.607 122 16 3 2714 2834 54944878 54944760 2.720000e-20 111.0
10 TraesCS3A01G379800 chr7A 91.667 72 6 0 5712 5783 647258907 647258978 5.880000e-17 100.0
11 TraesCS3A01G379800 chr7A 88.000 75 3 5 5714 5783 711460612 711460685 5.930000e-12 84.2
12 TraesCS3A01G379800 chr3D 95.010 2084 90 11 356 2432 486047135 486045059 0.000000e+00 3260.0
13 TraesCS3A01G379800 chr3D 93.594 1764 72 21 6971 8713 486043767 486042024 0.000000e+00 2593.0
14 TraesCS3A01G379800 chr3D 95.635 1283 47 7 3725 5003 464111847 464113124 0.000000e+00 2050.0
15 TraesCS3A01G379800 chr3D 96.589 1114 35 2 2614 3727 464110656 464111766 0.000000e+00 1844.0
16 TraesCS3A01G379800 chr3D 93.667 1200 57 12 5783 6976 486045062 486043876 0.000000e+00 1777.0
17 TraesCS3A01G379800 chr3D 90.315 826 28 10 4999 5783 464115584 464116398 0.000000e+00 1035.0
18 TraesCS3A01G379800 chr3D 98.370 184 3 0 2431 2614 464110443 464110626 3.210000e-84 324.0
19 TraesCS3A01G379800 chr3D 91.228 171 15 0 9039 9209 486041989 486041819 5.560000e-57 233.0
20 TraesCS3A01G379800 chr3D 93.506 77 3 1 8631 8707 486042026 486041952 7.560000e-21 113.0
21 TraesCS3A01G379800 chr3D 97.143 35 1 0 8656 8690 568496486 568496452 9.990000e-05 60.2
22 TraesCS3A01G379800 chr3B 89.465 1794 115 31 6910 8683 648741292 648739553 0.000000e+00 2198.0
23 TraesCS3A01G379800 chr3B 87.800 1664 120 32 116 1737 648744849 648743227 0.000000e+00 1871.0
24 TraesCS3A01G379800 chr3B 91.518 448 28 8 1969 2411 648742963 648742521 7.910000e-170 608.0
25 TraesCS3A01G379800 chr3B 90.438 251 17 5 6675 6920 648742239 648741991 3.210000e-84 324.0
26 TraesCS3A01G379800 chrUn 96.583 439 11 3 4026 4463 476097249 476097684 0.000000e+00 725.0
27 TraesCS3A01G379800 chr7B 79.192 495 94 6 5891 6380 588513779 588513289 1.480000e-87 335.0
28 TraesCS3A01G379800 chr7B 95.506 89 4 0 1001 1089 628584119 628584031 9.640000e-30 143.0
29 TraesCS3A01G379800 chr7B 77.826 230 46 4 5943 6168 154547926 154547698 4.480000e-28 137.0
30 TraesCS3A01G379800 chr7B 93.478 46 3 0 8662 8707 672525206 672525161 1.660000e-07 69.4
31 TraesCS3A01G379800 chr1B 77.355 499 84 16 6178 6669 315837902 315837426 1.520000e-67 268.0
32 TraesCS3A01G379800 chr1B 87.222 180 23 0 6995 7174 491240104 491240283 1.210000e-48 206.0
33 TraesCS3A01G379800 chr1B 75.391 256 56 6 2108 2359 491239333 491239585 5.840000e-22 117.0
34 TraesCS3A01G379800 chr2B 84.279 229 31 3 5896 6119 569982018 569982246 1.560000e-52 219.0
35 TraesCS3A01G379800 chr2B 76.883 385 65 14 6251 6626 66771401 66771770 7.290000e-46 196.0
36 TraesCS3A01G379800 chr2B 94.872 39 2 0 9059 9097 799551938 799551976 2.780000e-05 62.1
37 TraesCS3A01G379800 chr1D 87.571 177 22 0 6998 7174 366245752 366245576 1.210000e-48 206.0
38 TraesCS3A01G379800 chr1D 75.000 264 49 10 2108 2362 366246537 366246282 1.260000e-18 106.0
39 TraesCS3A01G379800 chr1D 96.970 33 1 0 5815 5847 8719517 8719485 1.000000e-03 56.5
40 TraesCS3A01G379800 chr1D 97.059 34 0 1 5816 5849 288941188 288941220 1.000000e-03 56.5
41 TraesCS3A01G379800 chr1D 96.875 32 1 0 5816 5847 417374619 417374588 5.000000e-03 54.7
42 TraesCS3A01G379800 chr1A 87.222 180 23 0 6995 7174 465503159 465503338 1.210000e-48 206.0
43 TraesCS3A01G379800 chr1A 74.704 253 57 6 2108 2356 465502725 465502974 1.260000e-18 106.0
44 TraesCS3A01G379800 chr1A 96.875 32 1 0 5816 5847 22556170 22556201 5.000000e-03 54.7
45 TraesCS3A01G379800 chr2A 76.111 360 66 12 5893 6244 517928709 517929056 4.420000e-38 171.0
46 TraesCS3A01G379800 chr4D 87.629 97 11 1 2714 2809 74076645 74076741 2.720000e-20 111.0
47 TraesCS3A01G379800 chr5B 84.906 106 13 3 2714 2818 292194958 292195061 4.550000e-18 104.0
48 TraesCS3A01G379800 chr5B 88.889 72 7 1 5712 5783 626709061 626708991 4.580000e-13 87.9
49 TraesCS3A01G379800 chr5B 97.826 46 1 0 2714 2759 267419929 267419974 7.670000e-11 80.5
50 TraesCS3A01G379800 chr5B 100.000 29 0 0 8658 8686 316364731 316364759 5.000000e-03 54.7
51 TraesCS3A01G379800 chr6B 91.837 49 4 0 8659 8707 82331393 82331345 1.660000e-07 69.4
52 TraesCS3A01G379800 chr6D 95.122 41 2 0 9061 9101 354543702 354543742 2.150000e-06 65.8
53 TraesCS3A01G379800 chr6D 96.875 32 1 0 5816 5847 408897864 408897895 5.000000e-03 54.7
54 TraesCS3A01G379800 chr6D 88.889 45 1 3 5816 5858 138388483 138388441 1.700000e-02 52.8
55 TraesCS3A01G379800 chr4B 100.000 33 0 0 8658 8690 576192222 576192190 2.780000e-05 62.1
56 TraesCS3A01G379800 chr4B 89.583 48 2 3 5815 5860 498387444 498387490 3.590000e-04 58.4
57 TraesCS3A01G379800 chr4A 89.583 48 2 3 5815 5860 60030994 60031040 3.590000e-04 58.4
58 TraesCS3A01G379800 chr4A 100.000 28 0 0 8659 8686 465545678 465545705 1.700000e-02 52.8
59 TraesCS3A01G379800 chr5D 100.000 29 0 0 6641 6669 243298126 243298154 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G379800 chr3A 629216969 629226177 9208 True 8203.00 16090 100.00000 1 9209 2 chr3A.!!$R2 9208
1 TraesCS3A01G379800 chr7D 596612218 596615626 3408 True 2594.50 4850 96.85200 2429 5781 2 chr7D.!!$R1 3352
2 TraesCS3A01G379800 chr7A 312554232 312559379 5147 True 2355.00 4460 93.57400 2428 5787 3 chr7A.!!$R2 3359
3 TraesCS3A01G379800 chr3D 486041819 486047135 5316 True 1595.20 3260 93.40100 356 9209 5 chr3D.!!$R2 8853
4 TraesCS3A01G379800 chr3D 464110443 464116398 5955 False 1313.25 2050 95.22725 2431 5783 4 chr3D.!!$F1 3352
5 TraesCS3A01G379800 chr3B 648739553 648744849 5296 True 1250.25 2198 89.80525 116 8683 4 chr3B.!!$R1 8567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 175 0.321741 TTGAGCGACTCTCCGTCTCT 60.322 55.000 8.07 0.00 40.25 3.10 F
810 839 0.673956 GGGGTCTTCGCTTGGACTTC 60.674 60.000 0.00 0.00 33.46 3.01 F
1774 1955 0.687354 GCGGGTGTCTGGGATCATAT 59.313 55.000 0.00 0.00 0.00 1.78 F
2015 2204 1.009829 GCGGCTCTCTAATGTTGTGG 58.990 55.000 0.00 0.00 0.00 4.17 F
3230 3716 1.373435 CCTGCAAAGACGGTACCCA 59.627 57.895 6.25 0.00 0.00 4.51 F
3922 4491 1.133915 TGTCAAACAGAGGGTTCCACC 60.134 52.381 0.00 0.00 39.29 4.61 F
4948 7310 0.179032 ACGAACAATCAGTGGGCACA 60.179 50.000 0.00 0.00 0.00 4.57 F
6014 10923 0.037326 GGCATCCTCACTTGTCGACA 60.037 55.000 15.76 15.76 0.00 4.35 F
6498 11409 0.333652 TGCTAACCCTAAAAGCCCCC 59.666 55.000 0.00 0.00 35.33 5.40 F
6591 11506 0.673985 CGGGATCTATTCGAGGCACA 59.326 55.000 0.00 0.00 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2185 1.009829 CCACAACATTAGAGAGCCGC 58.990 55.000 0.0 0.00 0.00 6.53 R
2031 2220 1.514553 GATGCAGCTCCTTTTGGGC 59.485 57.895 0.0 0.00 40.87 5.36 R
3609 4095 0.397941 CTTGGACTGGAGCTCCAACA 59.602 55.000 34.3 28.08 46.97 3.33 R
3628 4114 1.147153 GTGTAGGAGGCCATGGAGC 59.853 63.158 18.4 0.00 0.00 4.70 R
4493 6835 0.438830 GCGGCTCTTACAACAGTTCG 59.561 55.000 0.0 0.00 0.00 3.95 R
5432 10341 0.319040 CGACCTCCTATCCATGTGCG 60.319 60.000 0.0 0.00 0.00 5.34 R
6479 11390 0.333652 GGGGGCTTTTAGGGTTAGCA 59.666 55.000 0.0 0.00 36.64 3.49 R
7939 13719 3.195182 TGATCTCTTCAGAGTTCAGCAGG 59.805 47.826 11.9 0.00 42.62 4.85 R
8016 13796 0.613777 CGGGGAGAAGCCTGTAAAGT 59.386 55.000 0.0 0.00 36.66 2.66 R
8232 14012 1.830279 TGGTACTCACTACTCACCCG 58.170 55.000 0.0 0.00 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.963594 AGTTTCGGACCAGATTACTCTTAC 58.036 41.667 0.00 0.00 0.00 2.34
24 25 4.627611 TTCGGACCAGATTACTCTTACG 57.372 45.455 0.00 0.00 0.00 3.18
25 26 2.947652 TCGGACCAGATTACTCTTACGG 59.052 50.000 0.00 0.00 0.00 4.02
26 27 2.034305 CGGACCAGATTACTCTTACGGG 59.966 54.545 0.00 0.00 0.00 5.28
27 28 2.364647 GGACCAGATTACTCTTACGGGG 59.635 54.545 0.00 0.00 0.00 5.73
28 29 3.294214 GACCAGATTACTCTTACGGGGA 58.706 50.000 0.00 0.00 0.00 4.81
29 30 3.896272 GACCAGATTACTCTTACGGGGAT 59.104 47.826 0.00 0.00 0.00 3.85
30 31 5.070823 ACCAGATTACTCTTACGGGGATA 57.929 43.478 0.00 0.00 0.00 2.59
31 32 5.652324 ACCAGATTACTCTTACGGGGATAT 58.348 41.667 0.00 0.00 0.00 1.63
32 33 5.480772 ACCAGATTACTCTTACGGGGATATG 59.519 44.000 0.00 0.00 0.00 1.78
33 34 5.480772 CCAGATTACTCTTACGGGGATATGT 59.519 44.000 0.00 0.00 0.00 2.29
34 35 6.014499 CCAGATTACTCTTACGGGGATATGTT 60.014 42.308 0.00 0.00 0.00 2.71
35 36 7.091443 CAGATTACTCTTACGGGGATATGTTC 58.909 42.308 0.00 0.00 0.00 3.18
36 37 6.781014 AGATTACTCTTACGGGGATATGTTCA 59.219 38.462 0.00 0.00 0.00 3.18
37 38 4.939052 ACTCTTACGGGGATATGTTCAG 57.061 45.455 0.00 0.00 0.00 3.02
38 39 3.069729 ACTCTTACGGGGATATGTTCAGC 59.930 47.826 0.00 0.00 0.00 4.26
39 40 2.035449 TCTTACGGGGATATGTTCAGCG 59.965 50.000 0.00 0.00 0.00 5.18
40 41 0.677288 TACGGGGATATGTTCAGCGG 59.323 55.000 0.00 0.00 0.00 5.52
41 42 1.961277 CGGGGATATGTTCAGCGGC 60.961 63.158 0.00 0.00 0.00 6.53
42 43 1.600916 GGGGATATGTTCAGCGGCC 60.601 63.158 0.00 0.00 0.00 6.13
43 44 1.600916 GGGATATGTTCAGCGGCCC 60.601 63.158 0.00 0.00 0.00 5.80
44 45 1.148273 GGATATGTTCAGCGGCCCA 59.852 57.895 0.00 0.00 0.00 5.36
45 46 1.166531 GGATATGTTCAGCGGCCCAC 61.167 60.000 0.00 0.00 0.00 4.61
56 57 4.766970 GGCCCACGAGATCTGATG 57.233 61.111 0.00 0.00 0.00 3.07
57 58 1.070445 GGCCCACGAGATCTGATGG 59.930 63.158 13.05 13.05 0.00 3.51
58 59 1.402896 GGCCCACGAGATCTGATGGA 61.403 60.000 19.39 0.00 33.80 3.41
59 60 0.683973 GCCCACGAGATCTGATGGAT 59.316 55.000 19.39 0.00 37.37 3.41
68 69 3.244033 GATCTGATGGATCGATCCCAC 57.756 52.381 35.72 28.51 46.59 4.61
69 70 2.388526 TCTGATGGATCGATCCCACT 57.611 50.000 35.72 22.85 46.59 4.00
70 71 3.525800 TCTGATGGATCGATCCCACTA 57.474 47.619 35.72 21.20 46.59 2.74
71 72 4.053009 TCTGATGGATCGATCCCACTAT 57.947 45.455 35.72 24.58 46.59 2.12
72 73 4.019858 TCTGATGGATCGATCCCACTATC 58.980 47.826 35.72 29.79 46.59 2.08
73 74 3.766051 CTGATGGATCGATCCCACTATCA 59.234 47.826 35.72 31.99 46.59 2.15
74 75 4.159557 TGATGGATCGATCCCACTATCAA 58.840 43.478 35.72 18.76 46.59 2.57
75 76 4.221482 TGATGGATCGATCCCACTATCAAG 59.779 45.833 35.72 0.00 46.59 3.02
76 77 3.576861 TGGATCGATCCCACTATCAAGT 58.423 45.455 35.72 0.00 46.59 3.16
77 78 3.574396 TGGATCGATCCCACTATCAAGTC 59.426 47.826 35.72 11.47 46.59 3.01
78 79 3.829601 GGATCGATCCCACTATCAAGTCT 59.170 47.826 30.80 0.00 41.20 3.24
79 80 4.082463 GGATCGATCCCACTATCAAGTCTC 60.082 50.000 30.80 2.49 41.20 3.36
80 81 4.171878 TCGATCCCACTATCAAGTCTCT 57.828 45.455 0.00 0.00 31.97 3.10
81 82 4.537751 TCGATCCCACTATCAAGTCTCTT 58.462 43.478 0.00 0.00 31.97 2.85
82 83 4.580995 TCGATCCCACTATCAAGTCTCTTC 59.419 45.833 0.00 0.00 31.97 2.87
83 84 4.339530 CGATCCCACTATCAAGTCTCTTCA 59.660 45.833 0.00 0.00 31.97 3.02
84 85 5.596845 GATCCCACTATCAAGTCTCTTCAC 58.403 45.833 0.00 0.00 31.97 3.18
85 86 4.416516 TCCCACTATCAAGTCTCTTCACA 58.583 43.478 0.00 0.00 31.97 3.58
86 87 5.026121 TCCCACTATCAAGTCTCTTCACAT 58.974 41.667 0.00 0.00 31.97 3.21
87 88 5.127845 TCCCACTATCAAGTCTCTTCACATC 59.872 44.000 0.00 0.00 31.97 3.06
88 89 5.128499 CCCACTATCAAGTCTCTTCACATCT 59.872 44.000 0.00 0.00 31.97 2.90
89 90 6.351711 CCCACTATCAAGTCTCTTCACATCTT 60.352 42.308 0.00 0.00 31.97 2.40
90 91 7.102346 CCACTATCAAGTCTCTTCACATCTTT 58.898 38.462 0.00 0.00 31.97 2.52
91 92 7.064371 CCACTATCAAGTCTCTTCACATCTTTG 59.936 40.741 0.00 0.00 31.97 2.77
92 93 7.064371 CACTATCAAGTCTCTTCACATCTTTGG 59.936 40.741 0.00 0.00 31.97 3.28
93 94 4.645535 TCAAGTCTCTTCACATCTTTGGG 58.354 43.478 0.00 0.00 0.00 4.12
94 95 3.064900 AGTCTCTTCACATCTTTGGGC 57.935 47.619 0.00 0.00 0.00 5.36
95 96 2.641815 AGTCTCTTCACATCTTTGGGCT 59.358 45.455 0.00 0.00 0.00 5.19
96 97 2.746362 GTCTCTTCACATCTTTGGGCTG 59.254 50.000 0.00 0.00 0.00 4.85
97 98 2.373169 TCTCTTCACATCTTTGGGCTGT 59.627 45.455 0.00 0.00 0.00 4.40
98 99 3.582647 TCTCTTCACATCTTTGGGCTGTA 59.417 43.478 0.00 0.00 0.00 2.74
99 100 4.225942 TCTCTTCACATCTTTGGGCTGTAT 59.774 41.667 0.00 0.00 0.00 2.29
100 101 4.517285 TCTTCACATCTTTGGGCTGTATC 58.483 43.478 0.00 0.00 0.00 2.24
101 102 4.225942 TCTTCACATCTTTGGGCTGTATCT 59.774 41.667 0.00 0.00 0.00 1.98
102 103 4.574674 TCACATCTTTGGGCTGTATCTT 57.425 40.909 0.00 0.00 0.00 2.40
103 104 4.517285 TCACATCTTTGGGCTGTATCTTC 58.483 43.478 0.00 0.00 0.00 2.87
104 105 3.629398 CACATCTTTGGGCTGTATCTTCC 59.371 47.826 0.00 0.00 0.00 3.46
105 106 3.525199 ACATCTTTGGGCTGTATCTTCCT 59.475 43.478 0.00 0.00 0.00 3.36
106 107 4.018050 ACATCTTTGGGCTGTATCTTCCTT 60.018 41.667 0.00 0.00 0.00 3.36
107 108 4.657814 TCTTTGGGCTGTATCTTCCTTT 57.342 40.909 0.00 0.00 0.00 3.11
108 109 4.589908 TCTTTGGGCTGTATCTTCCTTTC 58.410 43.478 0.00 0.00 0.00 2.62
109 110 3.366052 TTGGGCTGTATCTTCCTTTCC 57.634 47.619 0.00 0.00 0.00 3.13
110 111 2.562296 TGGGCTGTATCTTCCTTTCCT 58.438 47.619 0.00 0.00 0.00 3.36
111 112 2.505819 TGGGCTGTATCTTCCTTTCCTC 59.494 50.000 0.00 0.00 0.00 3.71
112 113 2.774809 GGGCTGTATCTTCCTTTCCTCT 59.225 50.000 0.00 0.00 0.00 3.69
113 114 3.201045 GGGCTGTATCTTCCTTTCCTCTT 59.799 47.826 0.00 0.00 0.00 2.85
114 115 4.324641 GGGCTGTATCTTCCTTTCCTCTTT 60.325 45.833 0.00 0.00 0.00 2.52
115 116 5.257262 GGCTGTATCTTCCTTTCCTCTTTT 58.743 41.667 0.00 0.00 0.00 2.27
116 117 5.712446 GGCTGTATCTTCCTTTCCTCTTTTT 59.288 40.000 0.00 0.00 0.00 1.94
168 169 3.997021 TGATTTTCTTTGAGCGACTCTCC 59.003 43.478 8.07 0.00 41.18 3.71
169 170 2.065993 TTTCTTTGAGCGACTCTCCG 57.934 50.000 8.07 0.00 41.18 4.63
170 171 0.959553 TTCTTTGAGCGACTCTCCGT 59.040 50.000 8.07 0.00 41.18 4.69
171 172 0.522180 TCTTTGAGCGACTCTCCGTC 59.478 55.000 8.07 0.00 41.18 4.79
172 173 0.523966 CTTTGAGCGACTCTCCGTCT 59.476 55.000 8.07 0.00 41.18 4.18
173 174 0.522180 TTTGAGCGACTCTCCGTCTC 59.478 55.000 8.07 0.00 41.18 3.36
174 175 0.321741 TTGAGCGACTCTCCGTCTCT 60.322 55.000 8.07 0.00 40.25 3.10
175 176 2.011453 GAGCGACTCTCCGTCTCTC 58.989 63.158 0.00 0.00 44.46 3.20
195 196 1.196127 CCCGAAAGCAAAAGGTCGTAC 59.804 52.381 0.00 0.00 0.00 3.67
220 221 5.683621 GCACTAGTAAAGAGCTTCGTAAC 57.316 43.478 0.00 0.00 38.62 2.50
222 223 5.286558 GCACTAGTAAAGAGCTTCGTAACTG 59.713 44.000 0.00 0.00 38.62 3.16
227 228 2.969628 AGAGCTTCGTAACTGATGGG 57.030 50.000 0.00 0.00 0.00 4.00
228 229 1.134670 AGAGCTTCGTAACTGATGGGC 60.135 52.381 0.00 0.00 0.00 5.36
242 243 3.430473 TGGGCGAACCACAATTTCT 57.570 47.368 0.00 0.00 46.80 2.52
243 244 2.570415 TGGGCGAACCACAATTTCTA 57.430 45.000 0.00 0.00 46.80 2.10
244 245 3.080300 TGGGCGAACCACAATTTCTAT 57.920 42.857 0.00 0.00 46.80 1.98
245 246 3.013921 TGGGCGAACCACAATTTCTATC 58.986 45.455 0.00 0.00 46.80 2.08
247 248 3.279434 GGCGAACCACAATTTCTATCCT 58.721 45.455 0.00 0.00 35.26 3.24
251 252 6.156519 GCGAACCACAATTTCTATCCTTTTT 58.843 36.000 0.00 0.00 0.00 1.94
261 262 8.306761 CAATTTCTATCCTTTTTACCAGCACTT 58.693 33.333 0.00 0.00 0.00 3.16
262 263 7.833285 TTTCTATCCTTTTTACCAGCACTTT 57.167 32.000 0.00 0.00 0.00 2.66
263 264 6.817765 TCTATCCTTTTTACCAGCACTTTG 57.182 37.500 0.00 0.00 0.00 2.77
264 265 4.871933 ATCCTTTTTACCAGCACTTTGG 57.128 40.909 0.00 0.00 44.09 3.28
265 266 3.904717 TCCTTTTTACCAGCACTTTGGA 58.095 40.909 0.00 0.00 40.87 3.53
266 267 4.282496 TCCTTTTTACCAGCACTTTGGAA 58.718 39.130 0.00 0.00 40.87 3.53
267 268 4.712337 TCCTTTTTACCAGCACTTTGGAAA 59.288 37.500 0.00 0.00 40.87 3.13
268 269 5.187967 TCCTTTTTACCAGCACTTTGGAAAA 59.812 36.000 0.00 0.00 40.87 2.29
269 270 5.523552 CCTTTTTACCAGCACTTTGGAAAAG 59.476 40.000 0.00 5.72 40.87 2.27
270 271 3.726291 TTACCAGCACTTTGGAAAAGC 57.274 42.857 0.00 0.00 40.87 3.51
271 272 1.780503 ACCAGCACTTTGGAAAAGCT 58.219 45.000 0.00 0.00 40.87 3.74
273 274 2.877043 CAGCACTTTGGAAAAGCTGT 57.123 45.000 13.90 0.00 45.57 4.40
274 275 2.466846 CAGCACTTTGGAAAAGCTGTG 58.533 47.619 13.90 0.00 45.57 3.66
275 276 1.410153 AGCACTTTGGAAAAGCTGTGG 59.590 47.619 0.00 0.00 33.67 4.17
276 277 1.856802 CACTTTGGAAAAGCTGTGGC 58.143 50.000 0.00 0.00 39.06 5.01
288 289 2.346099 GCTGTGGCTATTCGCAAAAA 57.654 45.000 0.00 0.00 41.67 1.94
324 325 5.192327 CTGTGGCTATTTGATCCCAAATC 57.808 43.478 6.66 0.00 46.83 2.17
325 326 3.631686 TGTGGCTATTTGATCCCAAATCG 59.368 43.478 6.66 3.07 46.83 3.34
329 330 3.364366 GCTATTTGATCCCAAATCGCTCG 60.364 47.826 15.53 0.00 46.83 5.03
330 331 2.107950 TTTGATCCCAAATCGCTCGT 57.892 45.000 0.00 0.00 37.36 4.18
335 336 4.196193 TGATCCCAAATCGCTCGTTTTAT 58.804 39.130 0.00 0.00 0.00 1.40
336 337 5.361427 TGATCCCAAATCGCTCGTTTTATA 58.639 37.500 0.00 0.00 0.00 0.98
337 338 5.465390 TGATCCCAAATCGCTCGTTTTATAG 59.535 40.000 0.00 0.00 0.00 1.31
339 340 4.807304 TCCCAAATCGCTCGTTTTATAGTC 59.193 41.667 0.00 0.00 0.00 2.59
340 341 4.809426 CCCAAATCGCTCGTTTTATAGTCT 59.191 41.667 0.00 0.00 0.00 3.24
343 344 7.170998 CCCAAATCGCTCGTTTTATAGTCTAAT 59.829 37.037 0.00 0.00 0.00 1.73
344 345 9.188588 CCAAATCGCTCGTTTTATAGTCTAATA 57.811 33.333 0.00 0.00 0.00 0.98
458 486 4.863984 GTCGAACAGACTCGGACC 57.136 61.111 0.00 0.00 46.13 4.46
810 839 0.673956 GGGGTCTTCGCTTGGACTTC 60.674 60.000 0.00 0.00 33.46 3.01
813 842 1.014564 GTCTTCGCTTGGACTTCGGG 61.015 60.000 0.00 0.00 0.00 5.14
861 890 4.516195 GCCTCCCTTCGCTCGGTC 62.516 72.222 0.00 0.00 0.00 4.79
924 953 2.985847 GGAAAAGGCAGCCGCAGT 60.986 61.111 5.55 0.00 41.24 4.40
1212 1263 3.854459 GCCGCTGCGTGTTCTAGC 61.854 66.667 21.59 11.22 0.00 3.42
1214 1265 2.730672 CCGCTGCGTGTTCTAGCAC 61.731 63.158 21.59 0.00 38.59 4.40
1260 1313 2.037772 GCTTCCATATGGTCGGATCTGT 59.962 50.000 21.28 0.00 36.34 3.41
1336 1389 3.866066 TCAGTATGTTGTGCTTCCAGAGC 60.866 47.826 0.00 0.00 44.75 4.09
1379 1439 5.587388 TGATCGAATTTACTAGTTCGGGT 57.413 39.130 13.24 4.60 45.23 5.28
1405 1465 3.686227 TTGGGGATATGGATGCTGTTT 57.314 42.857 0.00 0.00 0.00 2.83
1406 1466 3.686227 TGGGGATATGGATGCTGTTTT 57.314 42.857 0.00 0.00 0.00 2.43
1420 1480 2.856222 CTGTTTTGGAGACTGGAGCTT 58.144 47.619 0.00 0.00 0.00 3.74
1515 1577 3.821033 GTGGTGGCTTAACTTGAGACATT 59.179 43.478 0.00 0.00 34.05 2.71
1651 1713 2.300723 AGCTGGTGGTACAATGTTCGTA 59.699 45.455 0.00 0.00 44.16 3.43
1727 1789 2.094182 GGTAGCGATTTGAGGACTGTGA 60.094 50.000 0.00 0.00 0.00 3.58
1748 1929 8.716646 TGTGATGTTGTATTTAGTGTATGGAG 57.283 34.615 0.00 0.00 0.00 3.86
1756 1937 6.765989 TGTATTTAGTGTATGGAGAACATGGC 59.234 38.462 0.00 0.00 40.82 4.40
1774 1955 0.687354 GCGGGTGTCTGGGATCATAT 59.313 55.000 0.00 0.00 0.00 1.78
1776 1957 1.970640 CGGGTGTCTGGGATCATATCA 59.029 52.381 0.00 0.00 0.00 2.15
1854 2043 9.374838 GCTGGAAAGATGTTTATGAATGAAAAT 57.625 29.630 0.00 0.00 0.00 1.82
1884 2073 6.354130 AGTTCAGTTACTTGGTAAGCTGAAA 58.646 36.000 21.62 12.58 41.51 2.69
1901 2090 5.818857 AGCTGAAAATTTTTGTGCTTGATGT 59.181 32.000 15.62 0.57 0.00 3.06
1925 2114 9.249053 TGTATTTCTGTTTATGCCCTTAATTCA 57.751 29.630 0.00 0.00 0.00 2.57
1930 2119 8.276252 TCTGTTTATGCCCTTAATTCAAGTAC 57.724 34.615 0.00 0.00 31.77 2.73
1979 2168 4.272504 TGCATTTGTAGCGCTTATTAGGAC 59.727 41.667 18.68 6.20 33.85 3.85
1980 2169 4.319549 GCATTTGTAGCGCTTATTAGGACC 60.320 45.833 18.68 0.00 0.00 4.46
1993 2182 7.332926 CGCTTATTAGGACCGTATAGAACTCTA 59.667 40.741 0.00 0.00 0.00 2.43
1996 2185 6.851222 TTAGGACCGTATAGAACTCTAACG 57.149 41.667 11.33 11.33 35.16 3.18
1998 2187 3.539756 GACCGTATAGAACTCTAACGCG 58.460 50.000 3.53 3.53 34.64 6.01
2015 2204 1.009829 GCGGCTCTCTAATGTTGTGG 58.990 55.000 0.00 0.00 0.00 4.17
2031 2220 6.718454 TGTTGTGGTCTTTTCAATGTTTTG 57.282 33.333 0.00 0.00 0.00 2.44
2104 2294 7.671495 ATTTGCTGATGGTTGGTAAATTTTC 57.329 32.000 0.00 0.00 0.00 2.29
2142 2332 2.503765 TGTTCTTCAGAGTTGGGTGTCA 59.496 45.455 0.00 0.00 0.00 3.58
2412 2863 8.100791 TGTTTATGGCAGTTCTGAACTTACTAT 58.899 33.333 19.89 18.45 40.46 2.12
2685 3166 3.589988 CAGAAGCGTTGTTGATACTCCT 58.410 45.455 0.00 0.00 0.00 3.69
3158 3644 4.954970 CACGCCACACCAAGCCCT 62.955 66.667 0.00 0.00 0.00 5.19
3199 3685 1.586028 GTGGATTGCATGCCACGTT 59.414 52.632 16.68 0.00 44.39 3.99
3230 3716 1.373435 CCTGCAAAGACGGTACCCA 59.627 57.895 6.25 0.00 0.00 4.51
3305 3791 8.240682 CGAGGACCTTGAGATCACTATTATTAG 58.759 40.741 1.99 0.00 0.00 1.73
3374 3860 1.402259 TCGAAGGAGAGACTCGCATTC 59.598 52.381 19.63 19.63 0.00 2.67
3404 3890 4.759516 TGGTTAAGAAAAACGATCTGCC 57.240 40.909 0.00 0.00 0.00 4.85
3470 3956 6.534475 TTAGAACTGATAACATGGGTACGT 57.466 37.500 0.00 0.00 0.00 3.57
3609 4095 6.072008 ACGGGGCAAATAAATTACTTAACGTT 60.072 34.615 5.88 5.88 0.00 3.99
3771 4340 9.899661 ATTGCAATATGTCTTAACCTAACTACA 57.100 29.630 11.02 0.00 0.00 2.74
3795 4364 9.545105 ACATTTTCTGCAATCTGAAACAATTTA 57.455 25.926 0.00 0.00 39.03 1.40
3857 4426 9.296951 GCAATACGCAACAAACTTAAATTTAAC 57.703 29.630 6.54 0.00 41.79 2.01
3922 4491 1.133915 TGTCAAACAGAGGGTTCCACC 60.134 52.381 0.00 0.00 39.29 4.61
4097 4678 6.468543 AGAACACCTTTCCATTCTTCTAGTC 58.531 40.000 0.00 0.00 0.00 2.59
4145 4726 4.025360 TGCATAGCATTTTCATTCCCAGT 58.975 39.130 0.00 0.00 31.71 4.00
4185 4766 5.369409 TCTGATTGAGAGGCATCTTGATT 57.631 39.130 0.76 0.00 35.30 2.57
4212 4793 8.608185 ATTTAATAATTCCAGCTTTTCTCCCA 57.392 30.769 0.00 0.00 0.00 4.37
4381 6722 6.409524 TTTCTCAGCAAAAACCAGATTGAT 57.590 33.333 0.00 0.00 0.00 2.57
4473 6815 3.181469 ACTTGTCAGGACGTATGTGTTGT 60.181 43.478 0.00 0.00 0.00 3.32
4487 6829 7.868922 ACGTATGTGTTGTCTTGTTTCACTATA 59.131 33.333 0.00 0.00 0.00 1.31
4493 6835 7.376072 GTGTTGTCTTGTTTCACTATAACTTGC 59.624 37.037 0.00 0.00 0.00 4.01
4536 6879 2.583441 CGGAACCTCCAGCACCTCA 61.583 63.158 0.00 0.00 35.91 3.86
4556 6899 0.766674 ACCCAACTGCCACTCCACTA 60.767 55.000 0.00 0.00 0.00 2.74
4667 7010 3.104512 TCCACCATGTCTTATCCTCGTT 58.895 45.455 0.00 0.00 0.00 3.85
4822 7165 5.348179 CACAGAACAGAGACAGCTTAATCTG 59.652 44.000 14.38 14.38 43.81 2.90
4939 7283 4.447290 TCAGGTGAAAGAACGAACAATCA 58.553 39.130 0.00 0.00 0.00 2.57
4947 7309 0.951558 AACGAACAATCAGTGGGCAC 59.048 50.000 0.00 0.00 0.00 5.01
4948 7310 0.179032 ACGAACAATCAGTGGGCACA 60.179 50.000 0.00 0.00 0.00 4.57
4949 7311 0.950836 CGAACAATCAGTGGGCACAA 59.049 50.000 0.00 0.00 0.00 3.33
4950 7312 1.336440 CGAACAATCAGTGGGCACAAA 59.664 47.619 0.00 0.00 0.00 2.83
4951 7313 2.223688 CGAACAATCAGTGGGCACAAAA 60.224 45.455 0.00 0.00 0.00 2.44
4952 7314 3.736433 CGAACAATCAGTGGGCACAAAAA 60.736 43.478 0.00 0.00 0.00 1.94
4953 7315 3.177997 ACAATCAGTGGGCACAAAAAC 57.822 42.857 0.00 0.00 0.00 2.43
4954 7316 2.499289 ACAATCAGTGGGCACAAAAACA 59.501 40.909 0.00 0.00 0.00 2.83
4955 7317 3.125316 CAATCAGTGGGCACAAAAACAG 58.875 45.455 0.00 0.00 0.00 3.16
4956 7318 0.459489 TCAGTGGGCACAAAAACAGC 59.541 50.000 0.00 0.00 0.00 4.40
4957 7319 0.461135 CAGTGGGCACAAAAACAGCT 59.539 50.000 0.00 0.00 0.00 4.24
4958 7320 0.461135 AGTGGGCACAAAAACAGCTG 59.539 50.000 13.48 13.48 0.00 4.24
4959 7321 1.143620 TGGGCACAAAAACAGCTGC 59.856 52.632 15.27 0.00 0.00 5.25
4960 7322 1.143620 GGGCACAAAAACAGCTGCA 59.856 52.632 15.27 0.00 0.00 4.41
4961 7323 0.249996 GGGCACAAAAACAGCTGCAT 60.250 50.000 15.27 0.00 0.00 3.96
4962 7324 1.142474 GGCACAAAAACAGCTGCATC 58.858 50.000 15.27 0.00 0.00 3.91
4963 7325 1.142474 GCACAAAAACAGCTGCATCC 58.858 50.000 15.27 0.00 0.00 3.51
4964 7326 1.538634 GCACAAAAACAGCTGCATCCA 60.539 47.619 15.27 0.00 0.00 3.41
4970 7349 5.640357 ACAAAAACAGCTGCATCCATATTTG 59.360 36.000 15.27 14.54 0.00 2.32
5098 9946 1.689575 CCCCCAGCTGAGCTTAGACTA 60.690 57.143 17.39 0.00 36.40 2.59
5160 10008 2.037772 GCATGGTACCTGGTCCTCTATG 59.962 54.545 14.36 10.09 0.00 2.23
5163 10011 2.292918 TGGTACCTGGTCCTCTATGCTT 60.293 50.000 14.36 0.00 0.00 3.91
5358 10267 2.668550 GGTCGTCGCCAAAGCCTT 60.669 61.111 1.46 0.00 34.57 4.35
5498 10407 1.035932 GTGCTTGGAGAGGCATGCAT 61.036 55.000 21.36 13.78 40.66 3.96
5505 10414 1.446907 GAGAGGCATGCATTATCGGG 58.553 55.000 21.36 0.00 0.00 5.14
5628 10537 5.299782 ACCGTTTTGTTGTTTGCTAGGATTA 59.700 36.000 0.00 0.00 0.00 1.75
5687 10596 4.025015 TCGCTACGTGAAAATAGGAGAC 57.975 45.455 0.00 0.00 0.00 3.36
5725 10634 0.042013 CGTGAGATCGTACGAGGCTC 60.042 60.000 29.46 29.46 42.54 4.70
5783 10692 6.008960 TCGATCCCCCTTTAATAGTAGAGAC 58.991 44.000 0.00 0.00 0.00 3.36
5784 10693 6.011481 CGATCCCCCTTTAATAGTAGAGACT 58.989 44.000 0.00 0.00 39.92 3.24
5785 10694 7.017950 TCGATCCCCCTTTAATAGTAGAGACTA 59.982 40.741 0.00 0.00 42.41 2.59
5810 10719 6.104691 ACTCCCTCCATTCCATAATTATTGGT 59.895 38.462 11.83 0.00 35.64 3.67
5815 10724 6.439487 TCCATTCCATAATTATTGGTGTGGT 58.561 36.000 21.59 1.90 39.12 4.16
5934 10843 5.940192 AATTTCACGCTAGAACATGTTCA 57.060 34.783 33.92 21.05 41.84 3.18
5993 10902 6.093082 GCGCTAGAAATTTAACCCTAGTTTGA 59.907 38.462 0.00 0.00 37.42 2.69
5996 10905 6.812879 AGAAATTTAACCCTAGTTTGACGG 57.187 37.500 0.00 0.00 37.42 4.79
6007 10916 1.072331 AGTTTGACGGCATCCTCACTT 59.928 47.619 0.00 0.00 0.00 3.16
6013 10922 1.078759 CGGCATCCTCACTTGTCGAC 61.079 60.000 9.11 9.11 43.29 4.20
6014 10923 0.037326 GGCATCCTCACTTGTCGACA 60.037 55.000 15.76 15.76 0.00 4.35
6036 10945 2.180159 GAGGTAGAACTTGGCGGCCA 62.180 60.000 19.77 19.77 0.00 5.36
6055 10964 3.357079 CTTGTGGAGCACGTGGGC 61.357 66.667 18.88 3.25 37.14 5.36
6071 10980 4.500116 GCGAGGTCGTGCTCCTCC 62.500 72.222 0.69 0.63 46.09 4.30
6073 10982 2.344203 CGAGGTCGTGCTCCTCCTT 61.344 63.158 6.42 0.00 46.09 3.36
6074 10983 1.216710 GAGGTCGTGCTCCTCCTTG 59.783 63.158 0.98 0.00 43.90 3.61
6075 10984 2.232298 GAGGTCGTGCTCCTCCTTGG 62.232 65.000 0.98 0.00 43.90 3.61
6076 10985 2.435059 GTCGTGCTCCTCCTTGGC 60.435 66.667 0.00 0.00 35.26 4.52
6077 10986 4.069232 TCGTGCTCCTCCTTGGCG 62.069 66.667 0.00 0.00 35.26 5.69
6113 11022 2.665603 GCACCTTCTTCTCCGCCT 59.334 61.111 0.00 0.00 0.00 5.52
6137 11046 2.738521 GCTTTCTCTGCGGCGACA 60.739 61.111 12.98 7.54 0.00 4.35
6151 11060 1.880340 CGACAAGCTCCTCATCGGC 60.880 63.158 0.00 0.00 0.00 5.54
6182 11091 1.133253 CTTGATGTGCGGCAAGACG 59.867 57.895 3.23 0.00 43.11 4.18
6334 11245 3.114616 CGTGCTTGCTCGGAGGTG 61.115 66.667 7.20 0.00 0.00 4.00
6386 11297 4.467084 GCCGGCCATCGTGGAAGA 62.467 66.667 18.11 0.00 40.96 2.87
6439 11350 0.391228 GCTAGAGTTGGCTAGGGCTC 59.609 60.000 0.00 0.00 38.60 4.70
6461 11372 1.447838 GCGGAGAGGACGAATTGCA 60.448 57.895 0.00 0.00 0.00 4.08
6479 11390 2.527875 GCAGAGGGGATCCGGGAT 60.528 66.667 9.85 9.85 38.33 3.85
6498 11409 0.333652 TGCTAACCCTAAAAGCCCCC 59.666 55.000 0.00 0.00 35.33 5.40
6513 11424 2.420043 CCCCGGTGCCGTGTATAG 59.580 66.667 9.90 0.00 37.81 1.31
6514 11425 2.428925 CCCCGGTGCCGTGTATAGT 61.429 63.158 9.90 0.00 37.81 2.12
6539 11452 1.304962 GGGGCCGAATTTCCAGGTT 60.305 57.895 0.00 0.00 0.00 3.50
6584 11499 1.811428 CGATACGCGGGATCTATTCG 58.189 55.000 12.47 3.05 36.03 3.34
6586 11501 2.537128 CGATACGCGGGATCTATTCGAG 60.537 54.545 12.47 0.00 36.03 4.04
6591 11506 0.673985 CGGGATCTATTCGAGGCACA 59.326 55.000 0.00 0.00 0.00 4.57
6649 11564 3.615509 CTGGCGGCCTTTTACGGGA 62.616 63.158 21.46 0.00 0.00 5.14
6651 11566 1.751544 GGCGGCCTTTTACGGGATT 60.752 57.895 12.87 0.00 0.00 3.01
6838 11758 6.942576 GCTAATATTGATGGTATTGGTGTCCT 59.057 38.462 0.00 0.00 0.00 3.85
6839 11759 7.448469 GCTAATATTGATGGTATTGGTGTCCTT 59.552 37.037 0.00 0.00 0.00 3.36
6889 11809 4.599047 AGATCCTCTACTGCAGTAATGC 57.401 45.455 25.95 8.51 0.00 3.56
6894 11814 5.560724 TCCTCTACTGCAGTAATGCTTTTT 58.439 37.500 25.95 0.00 35.49 1.94
6972 12602 9.762933 AAATCAATGTTTATGTTTGTAGCAAGT 57.237 25.926 0.00 0.00 0.00 3.16
6974 12604 9.840427 ATCAATGTTTATGTTTGTAGCAAGTAC 57.160 29.630 0.00 0.00 0.00 2.73
7022 12779 5.104318 AGGTCTTGGTTTTCTGACTTCTCTT 60.104 40.000 0.00 0.00 0.00 2.85
7083 12840 1.239347 GGGTTCAACTGTCTTCTGGC 58.761 55.000 0.00 0.00 0.00 4.85
7283 13040 6.304624 ACATATCTTGTCATCTGCAATGGAT 58.695 36.000 8.40 6.41 30.89 3.41
7315 13073 6.845302 TGTTCTATGCTTACAAATGCTCTTG 58.155 36.000 0.00 0.00 0.00 3.02
7343 13101 7.172342 ACATTTTGCTAGTGGTTAATACTCCA 58.828 34.615 0.00 0.00 0.00 3.86
7399 13157 7.370383 CAAACTTAGGAAATAGCACAACACAT 58.630 34.615 0.00 0.00 0.00 3.21
7442 13208 2.481854 CATGTGAGCTATCTGAGTGGC 58.518 52.381 0.00 0.00 0.00 5.01
7465 13231 7.122948 TGGCTTGTCCTTTTTCTAAGTTTTACA 59.877 33.333 0.00 0.00 35.26 2.41
7485 13251 7.546250 TTACACCCATTTTAACCATGTCATT 57.454 32.000 0.00 0.00 0.00 2.57
7486 13252 6.432403 ACACCCATTTTAACCATGTCATTT 57.568 33.333 0.00 0.00 0.00 2.32
7487 13253 6.836242 ACACCCATTTTAACCATGTCATTTT 58.164 32.000 0.00 0.00 0.00 1.82
7488 13254 7.967908 ACACCCATTTTAACCATGTCATTTTA 58.032 30.769 0.00 0.00 0.00 1.52
7489 13255 8.432805 ACACCCATTTTAACCATGTCATTTTAA 58.567 29.630 0.00 0.00 0.00 1.52
7490 13256 9.447157 CACCCATTTTAACCATGTCATTTTAAT 57.553 29.630 0.00 0.00 0.00 1.40
7553 13319 3.411446 TCTGTTTCACAGCAGGGTTATG 58.589 45.455 0.00 0.00 45.54 1.90
7554 13320 1.885887 TGTTTCACAGCAGGGTTATGC 59.114 47.619 0.00 0.00 46.88 3.14
7593 13359 9.997482 GTTCTGTTTGTTAAAAGAGTATCACAA 57.003 29.630 0.00 0.00 37.78 3.33
7616 13389 9.979578 ACAAAAAGCATGATGACTTATTACAAA 57.020 25.926 0.00 0.00 0.00 2.83
7680 13459 1.647346 TAATTCGGCATCCACGTGTC 58.353 50.000 15.65 0.33 0.00 3.67
7692 13471 1.444895 ACGTGTCGGTGAATACGCC 60.445 57.895 0.00 0.00 39.94 5.68
7742 13521 8.573035 TGTCCTTCAGGTATTTATTTTTCACAC 58.427 33.333 0.00 0.00 36.34 3.82
7821 13601 6.528537 TGGGCAATATATGTTTCATATGGC 57.471 37.500 2.13 11.06 35.41 4.40
7859 13639 7.339721 TGTTTTATGGTCTCCTGTTTTGTGTTA 59.660 33.333 0.00 0.00 0.00 2.41
7909 13689 4.678509 ATTGTGTAGTGTTTATGTGCCG 57.321 40.909 0.00 0.00 0.00 5.69
8037 13817 1.003233 CTTTACAGGCTTCTCCCCGTT 59.997 52.381 0.00 0.00 34.51 4.44
8232 14012 3.969117 TGTGTGAGTCATCAAAGCAAC 57.031 42.857 0.00 0.00 37.14 4.17
8244 14024 1.531149 CAAAGCAACGGGTGAGTAGTG 59.469 52.381 0.00 0.00 0.00 2.74
8248 14028 1.542915 GCAACGGGTGAGTAGTGAGTA 59.457 52.381 0.00 0.00 0.00 2.59
8288 14068 5.744171 TCTAACCATTCTGCTTCATGCTTA 58.256 37.500 0.00 0.00 43.37 3.09
8333 14114 2.682136 TCGCGAAGGGTGGATGGA 60.682 61.111 6.20 0.00 42.82 3.41
8361 14142 1.134250 TGCTGGTCTGTTTGTGCTGTA 60.134 47.619 0.00 0.00 0.00 2.74
8362 14143 1.946768 GCTGGTCTGTTTGTGCTGTAA 59.053 47.619 0.00 0.00 0.00 2.41
8478 14259 4.500477 GTGACACATGTTGTTTTTCTCTGC 59.500 41.667 0.00 0.00 39.17 4.26
8479 14260 3.694734 ACACATGTTGTTTTTCTCTGCG 58.305 40.909 0.00 0.00 33.09 5.18
8491 14272 0.389025 TCTCTGCGTTTGCTGACTGA 59.611 50.000 0.00 0.00 43.17 3.41
8521 14302 0.319083 TAACTTCGATGCACCGGTGT 59.681 50.000 33.92 17.27 0.00 4.16
8623 14406 7.490657 ACATACCATACTGACTGGTTTCTTA 57.509 36.000 10.29 0.00 44.67 2.10
8637 14421 6.944862 ACTGGTTTCTTATGAGCATCTCTTTT 59.055 34.615 0.00 0.00 34.92 2.27
8698 14482 8.714179 CATAATAAGTGTCGTGGTGAACTAAAA 58.286 33.333 0.00 0.00 0.00 1.52
8707 14491 3.199677 TGGTGAACTAAAACCACGACAG 58.800 45.455 0.00 0.00 41.56 3.51
9076 14860 5.937540 TCATGGTGAACTAAAATCACGACAT 59.062 36.000 0.00 0.00 46.41 3.06
9113 14897 2.941720 GGGAGCAGTAAAAGAGCATCAG 59.058 50.000 0.00 0.00 37.82 2.90
9134 14918 1.878775 CTGCTTCCTCCTTTTGGCG 59.121 57.895 0.00 0.00 40.12 5.69
9135 14919 0.890996 CTGCTTCCTCCTTTTGGCGT 60.891 55.000 0.00 0.00 40.12 5.68
9139 14923 1.681264 CTTCCTCCTTTTGGCGTGTTT 59.319 47.619 0.00 0.00 40.12 2.83
9141 14925 1.679153 TCCTCCTTTTGGCGTGTTTTC 59.321 47.619 0.00 0.00 40.12 2.29
9155 14939 4.537015 CGTGTTTTCCTGATCCAGTTTTC 58.463 43.478 0.00 0.00 0.00 2.29
9158 14942 5.237779 GTGTTTTCCTGATCCAGTTTTCGTA 59.762 40.000 0.00 0.00 0.00 3.43
9161 14945 4.137116 TCCTGATCCAGTTTTCGTATGG 57.863 45.455 0.00 0.00 35.30 2.74
9162 14946 3.772572 TCCTGATCCAGTTTTCGTATGGA 59.227 43.478 0.00 0.00 46.69 3.41
9175 14959 2.159198 TCGTATGGAGTTCTTTACCGGC 60.159 50.000 0.00 0.00 0.00 6.13
9180 14964 2.696707 TGGAGTTCTTTACCGGCGATAT 59.303 45.455 9.30 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.392811 CGTAAGAGTAATCTGGTCCGAAACT 60.393 44.000 0.00 0.00 43.02 2.66
1 2 4.797349 CGTAAGAGTAATCTGGTCCGAAAC 59.203 45.833 0.00 0.00 43.02 2.78
5 6 2.034305 CCCGTAAGAGTAATCTGGTCCG 59.966 54.545 0.00 0.00 43.02 4.79
6 7 2.364647 CCCCGTAAGAGTAATCTGGTCC 59.635 54.545 0.00 0.00 43.02 4.46
9 10 5.480772 ACATATCCCCGTAAGAGTAATCTGG 59.519 44.000 0.00 0.00 43.02 3.86
10 11 6.591750 ACATATCCCCGTAAGAGTAATCTG 57.408 41.667 0.00 0.00 43.02 2.90
11 12 6.781014 TGAACATATCCCCGTAAGAGTAATCT 59.219 38.462 0.00 0.00 43.02 2.40
12 13 6.989659 TGAACATATCCCCGTAAGAGTAATC 58.010 40.000 0.00 0.00 43.02 1.75
13 14 6.518537 GCTGAACATATCCCCGTAAGAGTAAT 60.519 42.308 0.00 0.00 43.02 1.89
14 15 5.221382 GCTGAACATATCCCCGTAAGAGTAA 60.221 44.000 0.00 0.00 43.02 2.24
15 16 4.280174 GCTGAACATATCCCCGTAAGAGTA 59.720 45.833 0.00 0.00 43.02 2.59
16 17 3.069729 GCTGAACATATCCCCGTAAGAGT 59.930 47.826 0.00 0.00 43.02 3.24
17 18 3.654414 GCTGAACATATCCCCGTAAGAG 58.346 50.000 0.00 0.00 43.02 2.85
18 19 2.035449 CGCTGAACATATCCCCGTAAGA 59.965 50.000 0.00 0.00 43.02 2.10
19 20 2.404215 CGCTGAACATATCCCCGTAAG 58.596 52.381 0.00 0.00 0.00 2.34
20 21 1.069513 CCGCTGAACATATCCCCGTAA 59.930 52.381 0.00 0.00 0.00 3.18
21 22 0.677288 CCGCTGAACATATCCCCGTA 59.323 55.000 0.00 0.00 0.00 4.02
22 23 1.445942 CCGCTGAACATATCCCCGT 59.554 57.895 0.00 0.00 0.00 5.28
23 24 1.961277 GCCGCTGAACATATCCCCG 60.961 63.158 0.00 0.00 0.00 5.73
24 25 1.600916 GGCCGCTGAACATATCCCC 60.601 63.158 0.00 0.00 0.00 4.81
25 26 1.600916 GGGCCGCTGAACATATCCC 60.601 63.158 0.00 0.00 0.00 3.85
26 27 1.148273 TGGGCCGCTGAACATATCC 59.852 57.895 0.00 0.00 0.00 2.59
27 28 1.498865 CGTGGGCCGCTGAACATATC 61.499 60.000 16.24 0.00 0.00 1.63
28 29 1.523711 CGTGGGCCGCTGAACATAT 60.524 57.895 16.24 0.00 0.00 1.78
29 30 2.125310 CGTGGGCCGCTGAACATA 60.125 61.111 16.24 0.00 0.00 2.29
30 31 3.958147 CTCGTGGGCCGCTGAACAT 62.958 63.158 16.24 0.00 36.19 2.71
31 32 4.680237 CTCGTGGGCCGCTGAACA 62.680 66.667 16.24 0.00 36.19 3.18
32 33 3.665675 ATCTCGTGGGCCGCTGAAC 62.666 63.158 16.24 0.00 36.19 3.18
33 34 3.371097 GATCTCGTGGGCCGCTGAA 62.371 63.158 16.24 0.00 36.19 3.02
34 35 3.838271 GATCTCGTGGGCCGCTGA 61.838 66.667 16.24 13.30 36.19 4.26
35 36 3.842923 AGATCTCGTGGGCCGCTG 61.843 66.667 16.24 8.98 36.19 5.18
36 37 3.842923 CAGATCTCGTGGGCCGCT 61.843 66.667 16.24 0.00 36.19 5.52
37 38 3.157217 ATCAGATCTCGTGGGCCGC 62.157 63.158 7.12 7.12 36.19 6.53
38 39 1.300465 CATCAGATCTCGTGGGCCG 60.300 63.158 0.00 0.00 38.13 6.13
39 40 1.070445 CCATCAGATCTCGTGGGCC 59.930 63.158 13.04 0.00 0.00 5.80
40 41 0.683973 ATCCATCAGATCTCGTGGGC 59.316 55.000 18.38 0.00 32.58 5.36
41 42 2.739885 GATCCATCAGATCTCGTGGG 57.260 55.000 18.38 7.69 46.85 4.61
51 52 9.654749 GACTTGATAGTGGGATCGATCCATCAG 62.655 48.148 38.29 28.71 40.91 2.90
52 53 7.971569 GACTTGATAGTGGGATCGATCCATCA 61.972 46.154 38.29 32.80 40.91 3.07
53 54 5.623368 GACTTGATAGTGGGATCGATCCATC 60.623 48.000 38.29 31.05 40.91 3.51
54 55 4.221703 GACTTGATAGTGGGATCGATCCAT 59.778 45.833 38.29 26.14 40.91 3.41
55 56 3.574396 GACTTGATAGTGGGATCGATCCA 59.426 47.826 38.29 24.65 40.91 3.41
56 57 3.829601 AGACTTGATAGTGGGATCGATCC 59.170 47.826 32.57 32.57 39.48 3.36
57 58 4.764823 AGAGACTTGATAGTGGGATCGATC 59.235 45.833 17.36 17.36 33.84 3.69
58 59 4.735369 AGAGACTTGATAGTGGGATCGAT 58.265 43.478 0.00 0.00 33.84 3.59
59 60 4.171878 AGAGACTTGATAGTGGGATCGA 57.828 45.455 0.00 0.00 33.84 3.59
60 61 4.339530 TGAAGAGACTTGATAGTGGGATCG 59.660 45.833 0.00 0.00 33.84 3.69
61 62 5.127845 TGTGAAGAGACTTGATAGTGGGATC 59.872 44.000 0.00 0.00 33.84 3.36
62 63 5.026121 TGTGAAGAGACTTGATAGTGGGAT 58.974 41.667 0.00 0.00 33.84 3.85
63 64 4.416516 TGTGAAGAGACTTGATAGTGGGA 58.583 43.478 0.00 0.00 33.84 4.37
64 65 4.808414 TGTGAAGAGACTTGATAGTGGG 57.192 45.455 0.00 0.00 33.84 4.61
65 66 6.219417 AGATGTGAAGAGACTTGATAGTGG 57.781 41.667 0.00 0.00 33.84 4.00
66 67 7.064371 CCAAAGATGTGAAGAGACTTGATAGTG 59.936 40.741 0.00 0.00 33.84 2.74
67 68 7.102346 CCAAAGATGTGAAGAGACTTGATAGT 58.898 38.462 0.00 0.00 37.31 2.12
68 69 6.538021 CCCAAAGATGTGAAGAGACTTGATAG 59.462 42.308 0.00 0.00 0.00 2.08
69 70 6.409704 CCCAAAGATGTGAAGAGACTTGATA 58.590 40.000 0.00 0.00 0.00 2.15
70 71 5.251764 CCCAAAGATGTGAAGAGACTTGAT 58.748 41.667 0.00 0.00 0.00 2.57
71 72 4.645535 CCCAAAGATGTGAAGAGACTTGA 58.354 43.478 0.00 0.00 0.00 3.02
72 73 3.190118 GCCCAAAGATGTGAAGAGACTTG 59.810 47.826 0.00 0.00 0.00 3.16
73 74 3.073650 AGCCCAAAGATGTGAAGAGACTT 59.926 43.478 0.00 0.00 0.00 3.01
74 75 2.641815 AGCCCAAAGATGTGAAGAGACT 59.358 45.455 0.00 0.00 0.00 3.24
75 76 2.746362 CAGCCCAAAGATGTGAAGAGAC 59.254 50.000 0.00 0.00 0.00 3.36
76 77 2.373169 ACAGCCCAAAGATGTGAAGAGA 59.627 45.455 0.00 0.00 0.00 3.10
77 78 2.787994 ACAGCCCAAAGATGTGAAGAG 58.212 47.619 0.00 0.00 0.00 2.85
78 79 2.957402 ACAGCCCAAAGATGTGAAGA 57.043 45.000 0.00 0.00 0.00 2.87
79 80 4.521146 AGATACAGCCCAAAGATGTGAAG 58.479 43.478 0.00 0.00 0.00 3.02
80 81 4.574674 AGATACAGCCCAAAGATGTGAA 57.425 40.909 0.00 0.00 0.00 3.18
81 82 4.517285 GAAGATACAGCCCAAAGATGTGA 58.483 43.478 0.00 0.00 0.00 3.58
82 83 3.629398 GGAAGATACAGCCCAAAGATGTG 59.371 47.826 0.00 0.00 0.00 3.21
83 84 3.525199 AGGAAGATACAGCCCAAAGATGT 59.475 43.478 0.00 0.00 0.00 3.06
84 85 4.162040 AGGAAGATACAGCCCAAAGATG 57.838 45.455 0.00 0.00 0.00 2.90
85 86 4.870021 AAGGAAGATACAGCCCAAAGAT 57.130 40.909 0.00 0.00 0.00 2.40
86 87 4.567747 GGAAAGGAAGATACAGCCCAAAGA 60.568 45.833 0.00 0.00 0.00 2.52
87 88 3.696548 GGAAAGGAAGATACAGCCCAAAG 59.303 47.826 0.00 0.00 0.00 2.77
88 89 3.333680 AGGAAAGGAAGATACAGCCCAAA 59.666 43.478 0.00 0.00 0.00 3.28
89 90 2.919602 AGGAAAGGAAGATACAGCCCAA 59.080 45.455 0.00 0.00 0.00 4.12
90 91 2.505819 GAGGAAAGGAAGATACAGCCCA 59.494 50.000 0.00 0.00 0.00 5.36
91 92 2.774809 AGAGGAAAGGAAGATACAGCCC 59.225 50.000 0.00 0.00 0.00 5.19
92 93 4.495690 AAGAGGAAAGGAAGATACAGCC 57.504 45.455 0.00 0.00 0.00 4.85
93 94 6.825944 AAAAAGAGGAAAGGAAGATACAGC 57.174 37.500 0.00 0.00 0.00 4.40
136 137 6.642131 CGCTCAAAGAAAATCAAGAAAATGGA 59.358 34.615 0.00 0.00 0.00 3.41
139 140 7.428826 AGTCGCTCAAAGAAAATCAAGAAAAT 58.571 30.769 0.00 0.00 0.00 1.82
168 169 1.461127 CTTTTGCTTTCGGGAGAGACG 59.539 52.381 0.00 0.00 41.75 4.18
169 170 1.807142 CCTTTTGCTTTCGGGAGAGAC 59.193 52.381 0.00 0.00 41.75 3.36
170 171 1.420138 ACCTTTTGCTTTCGGGAGAGA 59.580 47.619 0.00 0.00 41.75 3.10
171 172 1.807142 GACCTTTTGCTTTCGGGAGAG 59.193 52.381 0.00 0.00 41.75 3.20
172 173 1.876416 CGACCTTTTGCTTTCGGGAGA 60.876 52.381 0.00 0.00 0.00 3.71
173 174 0.517316 CGACCTTTTGCTTTCGGGAG 59.483 55.000 0.00 0.00 0.00 4.30
174 175 0.179040 ACGACCTTTTGCTTTCGGGA 60.179 50.000 0.00 0.00 35.77 5.14
175 176 1.196127 GTACGACCTTTTGCTTTCGGG 59.804 52.381 0.00 0.00 35.77 5.14
227 228 4.965119 AAGGATAGAAATTGTGGTTCGC 57.035 40.909 0.00 0.00 0.00 4.70
228 229 7.753580 GGTAAAAAGGATAGAAATTGTGGTTCG 59.246 37.037 0.00 0.00 0.00 3.95
240 241 5.710099 CCAAAGTGCTGGTAAAAAGGATAGA 59.290 40.000 0.00 0.00 0.00 1.98
242 243 5.636123 TCCAAAGTGCTGGTAAAAAGGATA 58.364 37.500 0.00 0.00 37.74 2.59
243 244 4.479158 TCCAAAGTGCTGGTAAAAAGGAT 58.521 39.130 0.00 0.00 37.74 3.24
244 245 3.904717 TCCAAAGTGCTGGTAAAAAGGA 58.095 40.909 0.00 0.00 37.74 3.36
245 246 4.664150 TTCCAAAGTGCTGGTAAAAAGG 57.336 40.909 0.00 0.00 37.74 3.11
247 248 4.873259 GCTTTTCCAAAGTGCTGGTAAAAA 59.127 37.500 0.00 0.00 35.91 1.94
251 252 2.622942 CAGCTTTTCCAAAGTGCTGGTA 59.377 45.455 15.55 0.00 40.39 3.25
288 289 3.459232 GCCACAGCTTTTCCTCTTTTT 57.541 42.857 0.00 0.00 35.50 1.94
301 302 2.057137 TGGGATCAAATAGCCACAGC 57.943 50.000 0.00 0.00 34.26 4.40
318 319 5.968387 AGACTATAAAACGAGCGATTTGG 57.032 39.130 8.14 2.42 0.00 3.28
570 598 1.169661 CGTTTGGGTAAGCTGGTGCA 61.170 55.000 0.00 0.00 42.74 4.57
636 664 4.373116 TCAACGAGGGCACGAGGC 62.373 66.667 9.99 0.00 43.74 4.70
637 665 2.432628 GTCAACGAGGGCACGAGG 60.433 66.667 9.99 2.50 37.03 4.63
638 666 2.805353 CGTCAACGAGGGCACGAG 60.805 66.667 9.99 3.13 43.02 4.18
644 672 4.351938 TGACGGCGTCAACGAGGG 62.352 66.667 37.53 0.00 39.78 4.30
1207 1258 2.289444 CCAAAACTCCCGAAGTGCTAGA 60.289 50.000 0.00 0.00 38.58 2.43
1212 1263 1.852067 CGCCCAAAACTCCCGAAGTG 61.852 60.000 0.00 0.00 38.58 3.16
1214 1265 1.599797 ACGCCCAAAACTCCCGAAG 60.600 57.895 0.00 0.00 0.00 3.79
1336 1389 5.305585 TCAAACCTAGCAAAACTCCTACTG 58.694 41.667 0.00 0.00 0.00 2.74
1379 1439 5.015497 ACAGCATCCATATCCCCAATAATCA 59.985 40.000 0.00 0.00 0.00 2.57
1405 1465 1.722034 AGTCAAGCTCCAGTCTCCAA 58.278 50.000 0.00 0.00 0.00 3.53
1406 1466 1.345741 CAAGTCAAGCTCCAGTCTCCA 59.654 52.381 0.00 0.00 0.00 3.86
1431 1491 7.900352 CGCTTGATTACTCAAACTATGAAGAAC 59.100 37.037 0.00 0.00 40.78 3.01
1515 1577 8.514594 CCAAATAAGAGAATGTGTTCTAAGCAA 58.485 33.333 0.00 0.00 44.57 3.91
1556 1618 3.055747 ACTTGGACACTAAGGAGCTAAGC 60.056 47.826 0.00 0.00 0.00 3.09
1631 1693 1.519408 ACGAACATTGTACCACCAGC 58.481 50.000 0.00 0.00 0.00 4.85
1727 1789 9.905713 ATGTTCTCCATACACTAAATACAACAT 57.094 29.630 0.00 0.00 29.82 2.71
1748 1929 2.040544 CCAGACACCCGCCATGTTC 61.041 63.158 0.00 0.00 0.00 3.18
1756 1937 1.970640 TGATATGATCCCAGACACCCG 59.029 52.381 0.00 0.00 0.00 5.28
1774 1955 6.569127 TCTACCTTGGCACCTAAATAATGA 57.431 37.500 0.00 0.00 0.00 2.57
1776 1957 6.127101 GGTTCTACCTTGGCACCTAAATAAT 58.873 40.000 0.00 0.00 34.73 1.28
1884 2073 8.891671 ACAGAAATACATCAAGCACAAAAATT 57.108 26.923 0.00 0.00 0.00 1.82
1925 2114 6.030228 GCAAATTACTCCGTACTACGTACTT 58.970 40.000 7.79 0.00 40.58 2.24
1930 2119 5.961395 ATTGCAAATTACTCCGTACTACG 57.039 39.130 1.71 1.32 42.11 3.51
1979 2168 2.913613 CCGCGTTAGAGTTCTATACGG 58.086 52.381 4.92 13.65 35.53 4.02
1980 2169 2.032204 AGCCGCGTTAGAGTTCTATACG 60.032 50.000 4.92 14.12 36.73 3.06
1993 2182 1.337823 ACAACATTAGAGAGCCGCGTT 60.338 47.619 4.92 0.00 0.00 4.84
1996 2185 1.009829 CCACAACATTAGAGAGCCGC 58.990 55.000 0.00 0.00 0.00 6.53
1998 2187 3.618690 AGACCACAACATTAGAGAGCC 57.381 47.619 0.00 0.00 0.00 4.70
2015 2204 5.809719 TTTGGGCAAAACATTGAAAAGAC 57.190 34.783 0.00 0.00 0.00 3.01
2031 2220 1.514553 GATGCAGCTCCTTTTGGGC 59.485 57.895 0.00 0.00 40.87 5.36
2142 2332 8.877864 TGTACCATCCAGTCATAAATTTTCTT 57.122 30.769 0.00 0.00 0.00 2.52
2227 2419 6.981722 AGAACCACACTGGAAAATATGAAAC 58.018 36.000 0.00 0.00 40.96 2.78
2230 2422 7.595819 AAAAGAACCACACTGGAAAATATGA 57.404 32.000 0.00 0.00 40.96 2.15
2231 2423 7.384932 GGAAAAAGAACCACACTGGAAAATATG 59.615 37.037 0.00 0.00 40.96 1.78
2232 2424 7.290014 AGGAAAAAGAACCACACTGGAAAATAT 59.710 33.333 0.00 0.00 40.96 1.28
2234 2426 5.425217 AGGAAAAAGAACCACACTGGAAAAT 59.575 36.000 0.00 0.00 40.96 1.82
2685 3166 5.008613 GTGTTTCATGTAAAGAAGGACAGCA 59.991 40.000 0.00 0.00 0.00 4.41
2743 3225 7.277981 TCGCTTCTCCTTCTTTATTAATGACAC 59.722 37.037 0.00 0.00 0.00 3.67
2914 3396 2.560542 ACGAGAGATACATGGAGGATGC 59.439 50.000 0.00 0.00 35.15 3.91
3199 3685 5.003804 GTCTTTGCAGGTAATTCTTCCTCA 58.996 41.667 0.00 0.00 30.91 3.86
3230 3716 4.543689 TCTTATCCTAATGGGTCACTCGT 58.456 43.478 0.00 0.00 36.25 4.18
3305 3791 5.566774 CGAATGTGAGACAAAGCTCAATTTC 59.433 40.000 0.00 0.00 45.69 2.17
3374 3860 5.049954 TCGTTTTTCTTAACCAATGTCTCCG 60.050 40.000 0.00 0.00 0.00 4.63
3429 3915 9.060347 CAGTTCTAATGTGTATCATTGGCTATT 57.940 33.333 3.73 0.00 45.14 1.73
3441 3927 7.857456 ACCCATGTTATCAGTTCTAATGTGTA 58.143 34.615 0.00 0.00 0.00 2.90
3470 3956 5.125097 GGAGAGTGATGGTCGTTAGTAGAAA 59.875 44.000 0.00 0.00 0.00 2.52
3542 4028 5.236047 GCCACTTAGATAAGCTCATGTTCTG 59.764 44.000 0.00 0.00 36.79 3.02
3609 4095 0.397941 CTTGGACTGGAGCTCCAACA 59.602 55.000 34.30 28.08 46.97 3.33
3628 4114 1.147153 GTGTAGGAGGCCATGGAGC 59.853 63.158 18.40 0.00 0.00 4.70
3857 4426 7.651304 TGAACACATGCTTTTGTTAACCATTAG 59.349 33.333 2.48 0.00 36.06 1.73
3922 4491 6.824305 ATGTTCCCTTTGTCATAGTTTGAG 57.176 37.500 0.00 0.00 34.17 3.02
4145 4726 1.977854 AGATTGGTGAGCCGCCATATA 59.022 47.619 8.09 0.00 43.92 0.86
4381 6722 7.828223 GGACGAGAGGTATATCTATTTACTCCA 59.172 40.741 0.00 0.00 0.00 3.86
4473 6815 6.704493 AGTTCGCAAGTTATAGTGAAACAAGA 59.296 34.615 0.00 0.00 36.18 3.02
4487 6829 3.002348 GCTCTTACAACAGTTCGCAAGTT 59.998 43.478 0.00 0.00 39.48 2.66
4493 6835 0.438830 GCGGCTCTTACAACAGTTCG 59.561 55.000 0.00 0.00 0.00 3.95
4536 6879 1.152756 GTGGAGTGGCAGTTGGGTT 60.153 57.895 0.00 0.00 0.00 4.11
4556 6899 1.954994 AAGGGGAGGGGAGGAGGAT 60.955 63.158 0.00 0.00 0.00 3.24
4630 6973 1.476891 GTGGATGACTACCGAAGCAGA 59.523 52.381 0.00 0.00 0.00 4.26
4633 6976 3.364277 GGTGGATGACTACCGAAGC 57.636 57.895 0.00 0.00 37.87 3.86
4667 7010 3.625897 CCCACTCGGAGTGCCACA 61.626 66.667 28.50 0.00 44.63 4.17
4693 7036 1.529244 ACTGGACACTGCCAAAGCC 60.529 57.895 0.00 0.00 37.52 4.35
4695 7038 1.799258 GCCACTGGACACTGCCAAAG 61.799 60.000 0.00 0.00 37.52 2.77
4845 7188 5.641777 TCATCTTGCACGAGATATTTTCG 57.358 39.130 0.56 8.50 43.38 3.46
4939 7283 0.461135 CAGCTGTTTTTGTGCCCACT 59.539 50.000 5.25 0.00 0.00 4.00
4947 7309 5.640357 ACAAATATGGATGCAGCTGTTTTTG 59.360 36.000 16.64 13.36 0.00 2.44
4948 7310 5.797051 ACAAATATGGATGCAGCTGTTTTT 58.203 33.333 16.64 0.00 0.00 1.94
4949 7311 5.410355 ACAAATATGGATGCAGCTGTTTT 57.590 34.783 16.64 0.00 0.00 2.43
4950 7312 6.720112 ATACAAATATGGATGCAGCTGTTT 57.280 33.333 16.64 2.53 0.00 2.83
4951 7313 6.548622 AGAATACAAATATGGATGCAGCTGTT 59.451 34.615 16.64 2.94 25.73 3.16
4952 7314 6.066690 AGAATACAAATATGGATGCAGCTGT 58.933 36.000 16.64 0.00 25.73 4.40
4953 7315 6.349115 GGAGAATACAAATATGGATGCAGCTG 60.349 42.308 10.11 10.11 25.73 4.24
4954 7316 5.709164 GGAGAATACAAATATGGATGCAGCT 59.291 40.000 0.22 0.00 25.73 4.24
4955 7317 5.709164 AGGAGAATACAAATATGGATGCAGC 59.291 40.000 0.00 0.00 25.73 5.25
4956 7318 7.879677 TGTAGGAGAATACAAATATGGATGCAG 59.120 37.037 0.00 0.00 32.80 4.41
4957 7319 7.744733 TGTAGGAGAATACAAATATGGATGCA 58.255 34.615 0.00 0.00 32.80 3.96
4958 7320 8.798859 ATGTAGGAGAATACAAATATGGATGC 57.201 34.615 0.00 0.00 39.04 3.91
5067 9915 1.065418 CAGCTGGGGGTACTTTACTGG 60.065 57.143 5.57 0.00 0.00 4.00
5069 9917 2.188817 CTCAGCTGGGGGTACTTTACT 58.811 52.381 15.13 0.00 0.00 2.24
5118 9966 1.526887 CGTCTGCGACAACTTGTTCAT 59.473 47.619 8.91 0.00 41.33 2.57
5160 10008 2.745515 ACACGTAGGAGGAGAAAAGC 57.254 50.000 0.00 0.00 0.00 3.51
5163 10011 3.005554 CGACTACACGTAGGAGGAGAAA 58.994 50.000 8.97 0.00 37.49 2.52
5429 10338 2.280119 TCCTATCCATGTGCGCGC 60.280 61.111 27.26 27.26 0.00 6.86
5430 10339 1.665916 CCTCCTATCCATGTGCGCG 60.666 63.158 0.00 0.00 0.00 6.86
5431 10340 0.601311 GACCTCCTATCCATGTGCGC 60.601 60.000 0.00 0.00 0.00 6.09
5432 10341 0.319040 CGACCTCCTATCCATGTGCG 60.319 60.000 0.00 0.00 0.00 5.34
5435 10344 0.471971 CCCCGACCTCCTATCCATGT 60.472 60.000 0.00 0.00 0.00 3.21
5543 10452 1.341531 CAGTTTCCTCACGACTCCACT 59.658 52.381 0.00 0.00 0.00 4.00
5725 10634 1.227263 CACCTTCCATCGCTACCCG 60.227 63.158 0.00 0.00 38.61 5.28
5738 10647 0.320421 CGTCGTGATGGTTCCACCTT 60.320 55.000 0.00 0.00 39.58 3.50
5783 10692 7.831193 CCAATAATTATGGAATGGAGGGAGTAG 59.169 40.741 7.81 0.00 40.56 2.57
5784 10693 7.297108 ACCAATAATTATGGAATGGAGGGAGTA 59.703 37.037 17.19 0.00 40.56 2.59
5785 10694 6.104691 ACCAATAATTATGGAATGGAGGGAGT 59.895 38.462 17.19 0.00 40.56 3.85
5810 10719 3.365472 TGCTAGAGATGCTCTAACCACA 58.635 45.455 5.75 0.62 41.74 4.17
5815 10724 4.085733 GGGATCTGCTAGAGATGCTCTAA 58.914 47.826 16.99 0.00 46.30 2.10
5909 10818 7.199766 TGAACATGTTCTAGCGTGAAATTTTT 58.800 30.769 32.57 0.00 40.14 1.94
5914 10823 4.994217 TGATGAACATGTTCTAGCGTGAAA 59.006 37.500 32.57 14.45 40.14 2.69
5918 10827 3.262420 GGTGATGAACATGTTCTAGCGT 58.738 45.455 32.57 16.94 40.14 5.07
5920 10829 6.018425 CACTATGGTGATGAACATGTTCTAGC 60.018 42.308 32.57 26.50 45.61 3.42
5967 10876 5.093849 ACTAGGGTTAAATTTCTAGCGCA 57.906 39.130 11.47 0.00 34.24 6.09
5993 10902 1.079819 CGACAAGTGAGGATGCCGT 60.080 57.895 0.00 0.00 0.00 5.68
5996 10905 1.071605 GTGTCGACAAGTGAGGATGC 58.928 55.000 21.95 0.00 0.00 3.91
6007 10916 0.877071 GTTCTACCTCGGTGTCGACA 59.123 55.000 15.76 15.76 40.88 4.35
6013 10922 0.736325 CGCCAAGTTCTACCTCGGTG 60.736 60.000 0.00 0.00 0.00 4.94
6014 10923 1.590147 CGCCAAGTTCTACCTCGGT 59.410 57.895 0.00 0.00 0.00 4.69
6036 10945 1.525995 CCCACGTGCTCCACAAGTT 60.526 57.895 10.91 0.00 39.10 2.66
6091 11000 1.761174 GGAGAAGAAGGTGCCACCA 59.239 57.895 17.80 0.00 41.95 4.17
6094 11003 2.347490 GCGGAGAAGAAGGTGCCA 59.653 61.111 0.00 0.00 0.00 4.92
6097 11006 1.743252 GCAGGCGGAGAAGAAGGTG 60.743 63.158 0.00 0.00 0.00 4.00
6098 11007 2.665603 GCAGGCGGAGAAGAAGGT 59.334 61.111 0.00 0.00 0.00 3.50
6113 11022 2.669569 GCAGAGAAAGCGGTGGCA 60.670 61.111 0.00 0.00 43.41 4.92
6137 11046 4.537433 GCCGCCGATGAGGAGCTT 62.537 66.667 0.00 0.00 45.00 3.74
6151 11060 3.417275 ATCAAGAGGTCTCGCGCCG 62.417 63.158 0.00 0.00 34.09 6.46
6156 11065 0.803768 CCGCACATCAAGAGGTCTCG 60.804 60.000 0.00 0.00 34.09 4.04
6159 11068 0.955428 TTGCCGCACATCAAGAGGTC 60.955 55.000 0.00 0.00 0.00 3.85
6308 11219 2.276868 GCAAGCACGCATAGCACG 60.277 61.111 0.00 0.00 0.00 5.34
6439 11350 2.890847 AATTCGTCCTCTCCGCTGCG 62.891 60.000 16.34 16.34 0.00 5.18
6461 11372 3.106859 ATCCCGGATCCCCTCTGCT 62.107 63.158 0.73 0.00 0.00 4.24
6479 11390 0.333652 GGGGGCTTTTAGGGTTAGCA 59.666 55.000 0.00 0.00 36.64 3.49
6498 11409 1.227147 CCACTATACACGGCACCGG 60.227 63.158 14.51 0.00 44.69 5.28
6570 11485 1.444553 GCCTCGAATAGATCCCGCG 60.445 63.158 0.00 0.00 0.00 6.46
6632 11547 2.487274 AATCCCGTAAAAGGCCGCCA 62.487 55.000 13.15 0.00 0.00 5.69
7022 12779 3.900971 TCCAGCCAGAAATATGAATGCA 58.099 40.909 0.00 0.00 0.00 3.96
7283 13040 9.409312 CATTTGTAAGCATAGAACAAACAATCA 57.591 29.630 2.30 0.00 43.61 2.57
7315 13073 8.494016 AGTATTAACCACTAGCAAAATGTCTC 57.506 34.615 0.00 0.00 0.00 3.36
7343 13101 9.499479 CTTATATGTAATTCAAGCCATCTGAGT 57.501 33.333 0.00 0.00 0.00 3.41
7383 13141 4.622740 GGCAAAGATGTGTTGTGCTATTTC 59.377 41.667 0.00 0.00 35.53 2.17
7442 13208 7.919091 GGGTGTAAAACTTAGAAAAAGGACAAG 59.081 37.037 0.00 0.00 0.00 3.16
7510 13276 5.362430 AGATGCACCAAAAGGACTACAAAAA 59.638 36.000 0.00 0.00 0.00 1.94
7511 13277 4.892934 AGATGCACCAAAAGGACTACAAAA 59.107 37.500 0.00 0.00 0.00 2.44
7553 13319 3.764885 ACAGAACAAAGTCAACACAGC 57.235 42.857 0.00 0.00 0.00 4.40
7554 13320 5.460646 ACAAACAGAACAAAGTCAACACAG 58.539 37.500 0.00 0.00 0.00 3.66
7618 13391 8.511321 TGCTGTCGTATTTTGATCTGTAATTTT 58.489 29.630 0.00 0.00 0.00 1.82
7619 13392 8.039603 TGCTGTCGTATTTTGATCTGTAATTT 57.960 30.769 0.00 0.00 0.00 1.82
7680 13459 3.700961 CCGAAGGCGTATTCACCG 58.299 61.111 3.27 0.00 46.14 4.94
7742 13521 8.827177 TTATAACCAAACTATAGCAAGATCCG 57.173 34.615 0.00 0.00 0.00 4.18
7777 13556 5.503927 CCATATAGAATGGGGGTCTCAATG 58.496 45.833 0.00 0.00 35.58 2.82
7821 13601 4.732784 ACCATAAAACAGCTGTAATTGCG 58.267 39.130 22.01 12.81 35.28 4.85
7859 13639 3.324846 TCACCTTTGTCTGTCTGTAGCAT 59.675 43.478 0.00 0.00 0.00 3.79
7939 13719 3.195182 TGATCTCTTCAGAGTTCAGCAGG 59.805 47.826 11.90 0.00 42.62 4.85
8016 13796 0.613777 CGGGGAGAAGCCTGTAAAGT 59.386 55.000 0.00 0.00 36.66 2.66
8037 13817 3.004734 GCTCTAGCCAGCAAGAAACAAAA 59.995 43.478 0.00 0.00 39.43 2.44
8077 13857 5.206587 AGGATCAAATGATTTCAGGGAAGG 58.793 41.667 0.00 0.00 34.37 3.46
8232 14012 1.830279 TGGTACTCACTACTCACCCG 58.170 55.000 0.00 0.00 0.00 5.28
8244 14024 2.093764 AGCAACTGAGCTCATGGTACTC 60.094 50.000 18.63 5.62 42.18 2.59
8288 14068 2.091720 TGATGGGCAAGCCAATATCAGT 60.092 45.455 13.87 0.00 37.98 3.41
8361 14142 8.126700 CCTTGACATTTTACACGTAAGAAACTT 58.873 33.333 0.00 0.00 43.62 2.66
8362 14143 7.281549 ACCTTGACATTTTACACGTAAGAAACT 59.718 33.333 0.00 0.00 43.62 2.66
8478 14259 2.549754 ACTTTGGATCAGTCAGCAAACG 59.450 45.455 0.00 0.00 0.00 3.60
8479 14260 3.316308 ACACTTTGGATCAGTCAGCAAAC 59.684 43.478 0.00 0.00 0.00 2.93
8491 14272 4.759693 TGCATCGAAGTTAACACTTTGGAT 59.240 37.500 8.61 3.37 43.79 3.41
8521 14302 4.617253 ATCAGGCACACTAGTTGTACAA 57.383 40.909 3.59 3.59 35.67 2.41
8608 14391 4.623932 TGCTCATAAGAAACCAGTCAGT 57.376 40.909 0.00 0.00 0.00 3.41
8637 14421 6.653020 AGTATATCACAGCAGACCATGAAAA 58.347 36.000 0.00 0.00 0.00 2.29
9054 14838 6.817765 AATGTCGTGATTTTAGTTCACCAT 57.182 33.333 0.00 0.00 40.29 3.55
9068 14852 6.091718 TCCGATCCATAATAAATGTCGTGA 57.908 37.500 0.00 0.00 0.00 4.35
9076 14860 3.907474 TGCTCCCTCCGATCCATAATAAA 59.093 43.478 0.00 0.00 0.00 1.40
9113 14897 1.211190 CAAAAGGAGGAAGCAGCGC 59.789 57.895 0.00 0.00 0.00 5.92
9123 14907 1.681264 AGGAAAACACGCCAAAAGGAG 59.319 47.619 0.00 0.00 0.00 3.69
9134 14918 4.036380 ACGAAAACTGGATCAGGAAAACAC 59.964 41.667 0.00 0.00 35.51 3.32
9135 14919 4.204012 ACGAAAACTGGATCAGGAAAACA 58.796 39.130 0.00 0.00 35.51 2.83
9139 14923 4.224147 TCCATACGAAAACTGGATCAGGAA 59.776 41.667 0.00 0.00 34.17 3.36
9141 14925 4.122776 CTCCATACGAAAACTGGATCAGG 58.877 47.826 0.00 0.00 38.36 3.86
9155 14939 2.199236 GCCGGTAAAGAACTCCATACG 58.801 52.381 1.90 0.00 0.00 3.06
9158 14942 0.899720 TCGCCGGTAAAGAACTCCAT 59.100 50.000 1.90 0.00 0.00 3.41
9161 14945 8.699283 ATAATTATATCGCCGGTAAAGAACTC 57.301 34.615 1.90 0.00 0.00 3.01
9162 14946 9.498176 AAATAATTATATCGCCGGTAAAGAACT 57.502 29.630 1.90 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.