Multiple sequence alignment - TraesCS3A01G379500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G379500 chr3A 100.000 4177 0 0 1 4177 629086007 629090183 0.000000e+00 7714.0
1 TraesCS3A01G379500 chr3A 99.001 3304 26 4 1 3301 696333956 696330657 0.000000e+00 5912.0
2 TraesCS3A01G379500 chr3A 84.665 1076 145 16 987 2055 629056478 629057540 0.000000e+00 1055.0
3 TraesCS3A01G379500 chr3A 80.597 1072 163 21 993 2055 696478032 696476997 0.000000e+00 785.0
4 TraesCS3A01G379500 chr3A 83.554 529 70 15 2701 3217 629057931 629058454 2.920000e-131 479.0
5 TraesCS3A01G379500 chr3A 97.080 274 6 2 2390 2661 741483460 741483187 1.060000e-125 460.0
6 TraesCS3A01G379500 chr3A 97.080 274 6 2 2390 2661 741557380 741557107 1.060000e-125 460.0
7 TraesCS3A01G379500 chr3A 97.753 267 3 3 2387 2652 517388342 517388078 1.370000e-124 457.0
8 TraesCS3A01G379500 chr3A 96.715 274 7 2 2390 2661 741414254 741413981 4.920000e-124 455.0
9 TraesCS3A01G379500 chr3A 96.715 274 7 2 2390 2661 741465355 741465082 4.920000e-124 455.0
10 TraesCS3A01G379500 chr3A 96.350 274 8 2 2390 2661 741576328 741576055 2.290000e-122 449.0
11 TraesCS3A01G379500 chr3A 90.500 200 19 0 2166 2365 696343618 696343419 8.900000e-67 265.0
12 TraesCS3A01G379500 chr3A 87.019 208 21 4 2159 2366 696476926 696476725 3.250000e-56 230.0
13 TraesCS3A01G379500 chr3B 91.573 2397 155 24 1 2366 747492024 747494404 0.000000e+00 3264.0
14 TraesCS3A01G379500 chr3B 91.555 2392 161 19 1 2366 744420872 744418496 0.000000e+00 3260.0
15 TraesCS3A01G379500 chr3B 92.302 1247 69 14 2649 3877 747494455 747495692 0.000000e+00 1746.0
16 TraesCS3A01G379500 chr3B 90.806 1240 79 18 2649 3877 744418445 744417230 0.000000e+00 1626.0
17 TraesCS3A01G379500 chr3B 85.766 1391 150 26 984 2366 745203414 745202064 0.000000e+00 1428.0
18 TraesCS3A01G379500 chr3B 84.786 1354 159 31 1027 2366 745474836 745473516 0.000000e+00 1315.0
19 TraesCS3A01G379500 chr3B 86.410 1089 140 6 945 2030 744590532 744591615 0.000000e+00 1184.0
20 TraesCS3A01G379500 chr3B 86.410 1089 140 6 945 2030 746856426 746855343 0.000000e+00 1184.0
21 TraesCS3A01G379500 chr3B 84.154 1117 143 26 982 2082 747093704 747094802 0.000000e+00 1051.0
22 TraesCS3A01G379500 chr3B 80.818 709 84 23 2701 3371 744545226 744544532 3.730000e-140 508.0
23 TraesCS3A01G379500 chr3B 84.676 509 71 5 2679 3184 744511373 744510869 6.230000e-138 501.0
24 TraesCS3A01G379500 chr3B 89.151 212 18 4 2158 2366 744339657 744339448 4.140000e-65 259.0
25 TraesCS3A01G379500 chr3B 87.209 86 9 2 3751 3835 744216143 744216059 3.440000e-16 97.1
26 TraesCS3A01G379500 chr3D 94.426 1543 66 10 831 2366 560235285 560233756 0.000000e+00 2355.0
27 TraesCS3A01G379500 chr3D 82.200 1500 211 38 854 2324 560551417 560552889 0.000000e+00 1240.0
28 TraesCS3A01G379500 chr3D 85.791 1119 78 37 2649 3741 560233706 560232643 0.000000e+00 1110.0
29 TraesCS3A01G379500 chr3D 79.181 855 116 33 10 851 560236145 560235340 1.710000e-148 536.0
30 TraesCS3A01G379500 chr3D 83.708 534 72 13 2704 3227 560285223 560284695 1.350000e-134 490.0
31 TraesCS3A01G379500 chr3D 81.319 455 51 17 1622 2055 560286133 560285692 5.170000e-89 339.0
32 TraesCS3A01G379500 chr3D 87.552 241 22 3 2126 2366 560784652 560784420 5.320000e-69 272.0
33 TraesCS3A01G379500 chr3D 88.957 163 15 2 3116 3277 293793598 293793758 9.160000e-47 198.0
34 TraesCS3A01G379500 chrUn 96.934 424 10 1 2747 3170 476666784 476666364 0.000000e+00 708.0
35 TraesCS3A01G379500 chr7A 98.106 264 4 1 2390 2652 506291320 506291583 3.810000e-125 459.0
36 TraesCS3A01G379500 chr6A 95.668 277 9 3 2393 2666 510256823 510256547 3.830000e-120 442.0
37 TraesCS3A01G379500 chr1D 90.667 75 7 0 3751 3825 385622389 385622463 2.660000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G379500 chr3A 629086007 629090183 4176 False 7714.000000 7714 100.0000 1 4177 1 chr3A.!!$F1 4176
1 TraesCS3A01G379500 chr3A 696330657 696333956 3299 True 5912.000000 5912 99.0010 1 3301 1 chr3A.!!$R2 3300
2 TraesCS3A01G379500 chr3A 629056478 629058454 1976 False 767.000000 1055 84.1095 987 3217 2 chr3A.!!$F2 2230
3 TraesCS3A01G379500 chr3A 696476725 696478032 1307 True 507.500000 785 83.8080 993 2366 2 chr3A.!!$R9 1373
4 TraesCS3A01G379500 chr3B 747492024 747495692 3668 False 2505.000000 3264 91.9375 1 3877 2 chr3B.!!$F3 3876
5 TraesCS3A01G379500 chr3B 744417230 744420872 3642 True 2443.000000 3260 91.1805 1 3877 2 chr3B.!!$R8 3876
6 TraesCS3A01G379500 chr3B 745202064 745203414 1350 True 1428.000000 1428 85.7660 984 2366 1 chr3B.!!$R5 1382
7 TraesCS3A01G379500 chr3B 745473516 745474836 1320 True 1315.000000 1315 84.7860 1027 2366 1 chr3B.!!$R6 1339
8 TraesCS3A01G379500 chr3B 744590532 744591615 1083 False 1184.000000 1184 86.4100 945 2030 1 chr3B.!!$F1 1085
9 TraesCS3A01G379500 chr3B 746855343 746856426 1083 True 1184.000000 1184 86.4100 945 2030 1 chr3B.!!$R7 1085
10 TraesCS3A01G379500 chr3B 747093704 747094802 1098 False 1051.000000 1051 84.1540 982 2082 1 chr3B.!!$F2 1100
11 TraesCS3A01G379500 chr3B 744544532 744545226 694 True 508.000000 508 80.8180 2701 3371 1 chr3B.!!$R4 670
12 TraesCS3A01G379500 chr3B 744510869 744511373 504 True 501.000000 501 84.6760 2679 3184 1 chr3B.!!$R3 505
13 TraesCS3A01G379500 chr3D 560232643 560236145 3502 True 1333.666667 2355 86.4660 10 3741 3 chr3D.!!$R2 3731
14 TraesCS3A01G379500 chr3D 560551417 560552889 1472 False 1240.000000 1240 82.2000 854 2324 1 chr3D.!!$F2 1470
15 TraesCS3A01G379500 chr3D 560284695 560286133 1438 True 414.500000 490 82.5135 1622 3227 2 chr3D.!!$R3 1605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 438 0.610232 AAAAGAGCCTCGCATGCCTT 60.610 50.000 13.15 5.42 0.0 4.35 F
959 1059 2.451493 TGCTCCTCCCCCAAACCA 60.451 61.111 0.00 0.00 0.0 3.67 F
1465 1632 1.302033 CCTTTCAGCTGCGTCCACT 60.302 57.895 9.47 0.00 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1465 1632 1.604308 CCATGGTGCTGCAGGTGAA 60.604 57.895 17.12 0.0 0.00 3.18 R
2366 2609 2.352388 TCAAAGACGCTTATTTCGGGG 58.648 47.619 0.00 0.0 0.00 5.73 R
3303 3695 2.360350 ACCAGCAATCCAGCCACG 60.360 61.111 0.00 0.0 34.23 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 119 4.219725 GGTGCTGCTAAATAAGGGTCAAAA 59.780 41.667 0.00 0.00 0.00 2.44
429 438 0.610232 AAAAGAGCCTCGCATGCCTT 60.610 50.000 13.15 5.42 0.00 4.35
751 765 9.613428 CTCCACAATATTTTCTATGGTGAGTTA 57.387 33.333 2.06 0.00 32.02 2.24
778 792 9.755064 CAAAGTTAGTATTGAGTATTTTCCACG 57.245 33.333 0.00 0.00 0.00 4.94
780 794 7.046033 AGTTAGTATTGAGTATTTTCCACGGG 58.954 38.462 0.00 0.00 0.00 5.28
959 1059 2.451493 TGCTCCTCCCCCAAACCA 60.451 61.111 0.00 0.00 0.00 3.67
1465 1632 1.302033 CCTTTCAGCTGCGTCCACT 60.302 57.895 9.47 0.00 0.00 4.00
2366 2609 7.629027 GCATTGGCAATTTTAGAATACTAGC 57.371 36.000 10.65 2.29 40.72 3.42
3399 3800 5.508200 TTTTCGTTTTACCTTGCAGTCAT 57.492 34.783 0.00 0.00 0.00 3.06
3422 3824 3.632333 TGTGTGCAGGCTATCTAGTACT 58.368 45.455 0.00 0.00 0.00 2.73
3423 3825 3.632604 TGTGTGCAGGCTATCTAGTACTC 59.367 47.826 0.00 0.00 0.00 2.59
3424 3826 2.879026 TGTGCAGGCTATCTAGTACTCG 59.121 50.000 0.00 0.00 0.00 4.18
3464 3868 3.066760 GTGGTCTTTCTGGTTTGTCCAAG 59.933 47.826 0.00 0.00 46.59 3.61
3495 3899 4.671377 TCATTTGTGCTGTGAAGTTGTTC 58.329 39.130 0.00 0.00 0.00 3.18
3497 3901 4.782019 TTTGTGCTGTGAAGTTGTTCTT 57.218 36.364 0.00 0.00 39.32 2.52
3511 3915 5.931532 AGTTGTTCTTGTTAGCATGAATCG 58.068 37.500 10.38 0.00 39.74 3.34
3527 3931 6.513230 GCATGAATCGACTTGGTATGCATTAA 60.513 38.462 3.54 0.00 39.25 1.40
3530 3934 4.137116 TCGACTTGGTATGCATTAAGCT 57.863 40.909 3.54 0.00 45.94 3.74
3698 4121 8.511321 CAAGAAGGTGTTGCTTACAAATGTATA 58.489 33.333 0.00 0.00 38.80 1.47
3737 4160 9.646427 GGTTAAACACTTATTGCAAATGGATTA 57.354 29.630 1.71 2.33 0.00 1.75
3741 4164 7.701539 ACACTTATTGCAAATGGATTACTGA 57.298 32.000 1.71 0.00 0.00 3.41
3746 4169 2.358582 TGCAAATGGATTACTGATGCCG 59.641 45.455 0.00 0.00 0.00 5.69
3751 4174 1.688735 TGGATTACTGATGCCGGAGAG 59.311 52.381 5.05 0.00 0.00 3.20
3752 4175 1.606737 GGATTACTGATGCCGGAGAGC 60.607 57.143 5.05 0.00 0.00 4.09
3769 4192 3.102515 GCATGCAAGTTGCTCACAG 57.897 52.632 27.17 13.62 45.31 3.66
3840 4263 5.182001 GCAGGACATCTTTACATTGTTCAGT 59.818 40.000 0.00 0.00 0.00 3.41
3850 4273 2.101249 ACATTGTTCAGTTGGCAGTTGG 59.899 45.455 0.00 0.00 0.00 3.77
3880 4303 9.605275 TGTATCTCCAGTAAATTGAAATCAGAG 57.395 33.333 0.00 0.00 0.00 3.35
3881 4304 9.606631 GTATCTCCAGTAAATTGAAATCAGAGT 57.393 33.333 0.00 0.00 0.00 3.24
3883 4306 8.924511 TCTCCAGTAAATTGAAATCAGAGTTT 57.075 30.769 0.00 0.00 0.00 2.66
3884 4307 9.354673 TCTCCAGTAAATTGAAATCAGAGTTTT 57.645 29.630 0.00 0.00 0.00 2.43
3885 4308 9.971922 CTCCAGTAAATTGAAATCAGAGTTTTT 57.028 29.630 0.00 0.00 0.00 1.94
3886 4309 9.748708 TCCAGTAAATTGAAATCAGAGTTTTTG 57.251 29.630 0.00 0.00 0.00 2.44
3887 4310 8.981647 CCAGTAAATTGAAATCAGAGTTTTTGG 58.018 33.333 0.00 0.00 0.00 3.28
3888 4311 8.490355 CAGTAAATTGAAATCAGAGTTTTTGGC 58.510 33.333 0.00 0.00 0.00 4.52
3889 4312 8.203485 AGTAAATTGAAATCAGAGTTTTTGGCA 58.797 29.630 0.00 0.00 0.00 4.92
3890 4313 8.992073 GTAAATTGAAATCAGAGTTTTTGGCAT 58.008 29.630 0.00 0.00 0.00 4.40
3891 4314 7.662604 AATTGAAATCAGAGTTTTTGGCATC 57.337 32.000 0.00 0.00 0.00 3.91
3892 4315 5.138125 TGAAATCAGAGTTTTTGGCATCC 57.862 39.130 0.00 0.00 0.00 3.51
3893 4316 4.834496 TGAAATCAGAGTTTTTGGCATCCT 59.166 37.500 0.00 0.00 0.00 3.24
3894 4317 5.305128 TGAAATCAGAGTTTTTGGCATCCTT 59.695 36.000 0.00 0.00 0.00 3.36
3895 4318 5.813513 AATCAGAGTTTTTGGCATCCTTT 57.186 34.783 0.00 0.00 0.00 3.11
3896 4319 6.916360 AATCAGAGTTTTTGGCATCCTTTA 57.084 33.333 0.00 0.00 0.00 1.85
3897 4320 5.705609 TCAGAGTTTTTGGCATCCTTTAC 57.294 39.130 0.00 0.00 0.00 2.01
3898 4321 4.522789 TCAGAGTTTTTGGCATCCTTTACC 59.477 41.667 0.00 0.00 0.00 2.85
3899 4322 3.832490 AGAGTTTTTGGCATCCTTTACCC 59.168 43.478 0.00 0.00 0.00 3.69
3900 4323 3.576550 GAGTTTTTGGCATCCTTTACCCA 59.423 43.478 0.00 0.00 0.00 4.51
3901 4324 4.167319 AGTTTTTGGCATCCTTTACCCAT 58.833 39.130 0.00 0.00 0.00 4.00
3902 4325 4.222810 AGTTTTTGGCATCCTTTACCCATC 59.777 41.667 0.00 0.00 0.00 3.51
3903 4326 3.756082 TTTGGCATCCTTTACCCATCT 57.244 42.857 0.00 0.00 0.00 2.90
3904 4327 4.871871 TTTGGCATCCTTTACCCATCTA 57.128 40.909 0.00 0.00 0.00 1.98
3905 4328 3.857157 TGGCATCCTTTACCCATCTAC 57.143 47.619 0.00 0.00 0.00 2.59
3906 4329 2.441750 TGGCATCCTTTACCCATCTACC 59.558 50.000 0.00 0.00 0.00 3.18
3907 4330 2.224793 GGCATCCTTTACCCATCTACCC 60.225 54.545 0.00 0.00 0.00 3.69
3908 4331 2.441750 GCATCCTTTACCCATCTACCCA 59.558 50.000 0.00 0.00 0.00 4.51
3909 4332 3.074538 GCATCCTTTACCCATCTACCCAT 59.925 47.826 0.00 0.00 0.00 4.00
3910 4333 4.807643 GCATCCTTTACCCATCTACCCATC 60.808 50.000 0.00 0.00 0.00 3.51
3911 4334 4.295905 TCCTTTACCCATCTACCCATCT 57.704 45.455 0.00 0.00 0.00 2.90
3912 4335 5.427857 TCCTTTACCCATCTACCCATCTA 57.572 43.478 0.00 0.00 0.00 1.98
3913 4336 5.152934 TCCTTTACCCATCTACCCATCTAC 58.847 45.833 0.00 0.00 0.00 2.59
3914 4337 4.905456 CCTTTACCCATCTACCCATCTACA 59.095 45.833 0.00 0.00 0.00 2.74
3915 4338 5.012148 CCTTTACCCATCTACCCATCTACAG 59.988 48.000 0.00 0.00 0.00 2.74
3916 4339 3.993658 ACCCATCTACCCATCTACAGA 57.006 47.619 0.00 0.00 0.00 3.41
3917 4340 3.850752 ACCCATCTACCCATCTACAGAG 58.149 50.000 0.00 0.00 0.00 3.35
3918 4341 3.207777 ACCCATCTACCCATCTACAGAGT 59.792 47.826 0.00 0.00 0.00 3.24
3919 4342 4.227197 CCCATCTACCCATCTACAGAGTT 58.773 47.826 0.00 0.00 0.00 3.01
3920 4343 5.103215 ACCCATCTACCCATCTACAGAGTTA 60.103 44.000 0.00 0.00 0.00 2.24
3921 4344 5.839063 CCCATCTACCCATCTACAGAGTTAA 59.161 44.000 0.00 0.00 0.00 2.01
3922 4345 6.239345 CCCATCTACCCATCTACAGAGTTAAC 60.239 46.154 0.00 0.00 0.00 2.01
3923 4346 6.439599 CATCTACCCATCTACAGAGTTAACG 58.560 44.000 0.00 0.00 0.00 3.18
3924 4347 5.503927 TCTACCCATCTACAGAGTTAACGT 58.496 41.667 0.00 0.00 0.00 3.99
3925 4348 6.653020 TCTACCCATCTACAGAGTTAACGTA 58.347 40.000 0.00 0.00 0.00 3.57
3926 4349 7.112122 TCTACCCATCTACAGAGTTAACGTAA 58.888 38.462 0.00 0.00 0.00 3.18
3927 4350 6.786967 ACCCATCTACAGAGTTAACGTAAT 57.213 37.500 0.00 0.00 0.00 1.89
3928 4351 7.179076 ACCCATCTACAGAGTTAACGTAATT 57.821 36.000 0.00 0.00 0.00 1.40
3929 4352 7.263496 ACCCATCTACAGAGTTAACGTAATTC 58.737 38.462 0.00 0.00 0.00 2.17
3930 4353 7.123847 ACCCATCTACAGAGTTAACGTAATTCT 59.876 37.037 0.00 0.00 35.45 2.40
3931 4354 8.627403 CCCATCTACAGAGTTAACGTAATTCTA 58.373 37.037 0.00 0.00 33.64 2.10
3932 4355 9.448294 CCATCTACAGAGTTAACGTAATTCTAC 57.552 37.037 0.00 0.00 33.64 2.59
3933 4356 9.999009 CATCTACAGAGTTAACGTAATTCTACA 57.001 33.333 0.00 0.00 33.64 2.74
3935 4358 9.440773 TCTACAGAGTTAACGTAATTCTACAGA 57.559 33.333 0.00 1.33 33.64 3.41
3936 4359 9.488124 CTACAGAGTTAACGTAATTCTACAGAC 57.512 37.037 0.00 0.00 33.64 3.51
3937 4360 7.311408 ACAGAGTTAACGTAATTCTACAGACC 58.689 38.462 0.00 0.00 33.64 3.85
3938 4361 7.040201 ACAGAGTTAACGTAATTCTACAGACCA 60.040 37.037 0.00 0.00 33.64 4.02
3939 4362 7.485277 CAGAGTTAACGTAATTCTACAGACCAG 59.515 40.741 0.00 0.00 33.64 4.00
3940 4363 6.098017 AGTTAACGTAATTCTACAGACCAGC 58.902 40.000 0.00 0.00 0.00 4.85
3941 4364 4.530710 AACGTAATTCTACAGACCAGCA 57.469 40.909 0.00 0.00 0.00 4.41
3942 4365 4.737855 ACGTAATTCTACAGACCAGCAT 57.262 40.909 0.00 0.00 0.00 3.79
3943 4366 4.433615 ACGTAATTCTACAGACCAGCATG 58.566 43.478 0.00 0.00 0.00 4.06
3958 4381 4.889832 CAGCATGGACTCTGGAATTTAC 57.110 45.455 0.00 0.00 0.00 2.01
3959 4382 4.264253 CAGCATGGACTCTGGAATTTACA 58.736 43.478 0.00 0.00 0.00 2.41
3960 4383 4.885907 CAGCATGGACTCTGGAATTTACAT 59.114 41.667 0.00 0.00 0.00 2.29
3961 4384 5.008415 CAGCATGGACTCTGGAATTTACATC 59.992 44.000 0.00 0.00 0.00 3.06
3962 4385 4.276926 GCATGGACTCTGGAATTTACATCC 59.723 45.833 0.00 0.00 37.48 3.51
3963 4386 5.439721 CATGGACTCTGGAATTTACATCCA 58.560 41.667 5.16 5.16 44.58 3.41
3964 4387 5.715439 TGGACTCTGGAATTTACATCCAT 57.285 39.130 0.00 0.00 45.57 3.41
3965 4388 5.439721 TGGACTCTGGAATTTACATCCATG 58.560 41.667 0.00 0.00 45.57 3.66
3966 4389 5.044919 TGGACTCTGGAATTTACATCCATGT 60.045 40.000 0.00 0.00 45.57 3.21
3967 4390 5.529060 GGACTCTGGAATTTACATCCATGTC 59.471 44.000 14.83 14.83 45.57 3.06
3968 4391 5.118990 ACTCTGGAATTTACATCCATGTCG 58.881 41.667 0.00 0.00 45.57 4.35
3969 4392 5.104941 ACTCTGGAATTTACATCCATGTCGA 60.105 40.000 0.00 0.00 45.57 4.20
3970 4393 5.359756 TCTGGAATTTACATCCATGTCGAG 58.640 41.667 0.00 0.00 45.57 4.04
3971 4394 4.450976 TGGAATTTACATCCATGTCGAGG 58.549 43.478 0.00 0.00 41.98 4.63
3972 4395 4.080582 TGGAATTTACATCCATGTCGAGGT 60.081 41.667 0.00 0.00 41.98 3.85
3973 4396 4.511826 GGAATTTACATCCATGTCGAGGTC 59.488 45.833 0.00 0.00 41.97 3.85
3974 4397 5.359194 AATTTACATCCATGTCGAGGTCT 57.641 39.130 0.00 0.00 41.97 3.85
3975 4398 3.801114 TTACATCCATGTCGAGGTCTG 57.199 47.619 0.00 0.00 41.97 3.51
3976 4399 1.852633 ACATCCATGTCGAGGTCTGA 58.147 50.000 0.00 0.00 35.87 3.27
3977 4400 2.179427 ACATCCATGTCGAGGTCTGAA 58.821 47.619 0.00 0.00 35.87 3.02
3978 4401 2.768527 ACATCCATGTCGAGGTCTGAAT 59.231 45.455 0.00 0.00 35.87 2.57
3979 4402 3.960755 ACATCCATGTCGAGGTCTGAATA 59.039 43.478 0.00 0.00 35.87 1.75
3980 4403 4.202161 ACATCCATGTCGAGGTCTGAATAC 60.202 45.833 0.00 0.00 35.87 1.89
3981 4404 3.361786 TCCATGTCGAGGTCTGAATACA 58.638 45.455 0.00 0.00 0.00 2.29
3982 4405 3.767131 TCCATGTCGAGGTCTGAATACAA 59.233 43.478 0.00 0.00 0.00 2.41
3983 4406 4.115516 CCATGTCGAGGTCTGAATACAAG 58.884 47.826 0.00 0.00 0.00 3.16
3984 4407 4.382040 CCATGTCGAGGTCTGAATACAAGT 60.382 45.833 0.00 0.00 0.00 3.16
3985 4408 5.163550 CCATGTCGAGGTCTGAATACAAGTA 60.164 44.000 0.00 0.00 0.00 2.24
3986 4409 5.306532 TGTCGAGGTCTGAATACAAGTAC 57.693 43.478 0.00 0.00 0.00 2.73
3987 4410 4.763279 TGTCGAGGTCTGAATACAAGTACA 59.237 41.667 0.00 0.00 0.00 2.90
3988 4411 5.106277 TGTCGAGGTCTGAATACAAGTACAG 60.106 44.000 0.00 0.00 0.00 2.74
3989 4412 5.008331 TCGAGGTCTGAATACAAGTACAGT 58.992 41.667 0.00 0.00 0.00 3.55
3990 4413 5.475909 TCGAGGTCTGAATACAAGTACAGTT 59.524 40.000 0.00 0.00 0.00 3.16
3991 4414 6.015688 TCGAGGTCTGAATACAAGTACAGTTT 60.016 38.462 0.00 0.00 0.00 2.66
3992 4415 6.645415 CGAGGTCTGAATACAAGTACAGTTTT 59.355 38.462 0.00 0.00 0.00 2.43
3993 4416 7.170998 CGAGGTCTGAATACAAGTACAGTTTTT 59.829 37.037 0.00 0.00 0.00 1.94
3994 4417 8.154649 AGGTCTGAATACAAGTACAGTTTTTG 57.845 34.615 0.00 0.00 0.00 2.44
3995 4418 6.856426 GGTCTGAATACAAGTACAGTTTTTGC 59.144 38.462 0.00 0.00 0.00 3.68
3996 4419 7.255139 GGTCTGAATACAAGTACAGTTTTTGCT 60.255 37.037 0.00 0.00 0.00 3.91
3997 4420 8.129211 GTCTGAATACAAGTACAGTTTTTGCTT 58.871 33.333 0.00 0.00 0.00 3.91
3998 4421 9.332502 TCTGAATACAAGTACAGTTTTTGCTTA 57.667 29.630 0.00 0.00 0.00 3.09
3999 4422 9.599322 CTGAATACAAGTACAGTTTTTGCTTAG 57.401 33.333 0.00 0.00 0.00 2.18
4000 4423 9.116067 TGAATACAAGTACAGTTTTTGCTTAGT 57.884 29.630 0.00 0.00 0.00 2.24
4001 4424 9.946165 GAATACAAGTACAGTTTTTGCTTAGTT 57.054 29.630 0.00 0.00 0.00 2.24
4003 4426 9.730420 ATACAAGTACAGTTTTTGCTTAGTTTG 57.270 29.630 0.00 0.00 0.00 2.93
4004 4427 7.822658 ACAAGTACAGTTTTTGCTTAGTTTGA 58.177 30.769 0.00 0.00 0.00 2.69
4005 4428 8.301002 ACAAGTACAGTTTTTGCTTAGTTTGAA 58.699 29.630 0.00 0.00 0.00 2.69
4006 4429 9.301153 CAAGTACAGTTTTTGCTTAGTTTGAAT 57.699 29.630 0.00 0.00 0.00 2.57
4009 4432 9.946165 GTACAGTTTTTGCTTAGTTTGAATAGT 57.054 29.630 0.00 0.00 0.00 2.12
4011 4434 9.946165 ACAGTTTTTGCTTAGTTTGAATAGTAC 57.054 29.630 0.00 0.00 0.00 2.73
4012 4435 9.944663 CAGTTTTTGCTTAGTTTGAATAGTACA 57.055 29.630 0.00 0.00 0.00 2.90
4017 4440 7.843490 TGCTTAGTTTGAATAGTACATGACC 57.157 36.000 0.00 0.00 0.00 4.02
4018 4441 6.821665 TGCTTAGTTTGAATAGTACATGACCC 59.178 38.462 0.00 0.00 0.00 4.46
4019 4442 6.260271 GCTTAGTTTGAATAGTACATGACCCC 59.740 42.308 0.00 0.00 0.00 4.95
4020 4443 7.504926 TTAGTTTGAATAGTACATGACCCCT 57.495 36.000 0.00 0.00 0.00 4.79
4021 4444 5.745227 AGTTTGAATAGTACATGACCCCTG 58.255 41.667 0.00 0.00 0.00 4.45
4022 4445 4.771114 TTGAATAGTACATGACCCCTGG 57.229 45.455 0.00 0.00 0.00 4.45
4023 4446 3.731431 TGAATAGTACATGACCCCTGGT 58.269 45.455 0.00 0.00 39.44 4.00
4024 4447 4.108570 TGAATAGTACATGACCCCTGGTT 58.891 43.478 0.00 0.00 35.25 3.67
4025 4448 4.538490 TGAATAGTACATGACCCCTGGTTT 59.462 41.667 0.00 0.00 35.25 3.27
4026 4449 5.014755 TGAATAGTACATGACCCCTGGTTTT 59.985 40.000 0.00 0.00 35.25 2.43
4027 4450 3.895704 AGTACATGACCCCTGGTTTTT 57.104 42.857 0.00 0.00 35.25 1.94
4028 4451 3.763057 AGTACATGACCCCTGGTTTTTC 58.237 45.455 0.00 0.00 35.25 2.29
4029 4452 3.397955 AGTACATGACCCCTGGTTTTTCT 59.602 43.478 0.00 0.00 35.25 2.52
4030 4453 2.597455 ACATGACCCCTGGTTTTTCTG 58.403 47.619 0.00 0.00 35.25 3.02
4031 4454 2.176798 ACATGACCCCTGGTTTTTCTGA 59.823 45.455 0.00 0.00 35.25 3.27
4032 4455 2.358322 TGACCCCTGGTTTTTCTGAC 57.642 50.000 0.00 0.00 35.25 3.51
4033 4456 1.133606 TGACCCCTGGTTTTTCTGACC 60.134 52.381 0.00 0.00 35.25 4.02
4034 4457 1.145119 GACCCCTGGTTTTTCTGACCT 59.855 52.381 0.00 0.00 35.25 3.85
4035 4458 1.573857 ACCCCTGGTTTTTCTGACCTT 59.426 47.619 0.00 0.00 38.04 3.50
4036 4459 2.787035 ACCCCTGGTTTTTCTGACCTTA 59.213 45.455 0.00 0.00 38.04 2.69
4037 4460 3.401342 ACCCCTGGTTTTTCTGACCTTAT 59.599 43.478 0.00 0.00 38.04 1.73
4038 4461 4.140782 ACCCCTGGTTTTTCTGACCTTATT 60.141 41.667 0.00 0.00 38.04 1.40
4039 4462 4.838423 CCCCTGGTTTTTCTGACCTTATTT 59.162 41.667 0.00 0.00 38.04 1.40
4040 4463 6.014012 CCCCTGGTTTTTCTGACCTTATTTA 58.986 40.000 0.00 0.00 38.04 1.40
4041 4464 6.152831 CCCCTGGTTTTTCTGACCTTATTTAG 59.847 42.308 0.00 0.00 38.04 1.85
4054 4477 4.200092 CCTTATTTAGGTTCCCACTCAGC 58.800 47.826 0.00 0.00 39.39 4.26
4055 4478 4.080299 CCTTATTTAGGTTCCCACTCAGCT 60.080 45.833 0.00 0.00 39.39 4.24
4056 4479 2.859165 TTTAGGTTCCCACTCAGCTG 57.141 50.000 7.63 7.63 0.00 4.24
4057 4480 0.324943 TTAGGTTCCCACTCAGCTGC 59.675 55.000 9.47 0.00 0.00 5.25
4058 4481 0.545309 TAGGTTCCCACTCAGCTGCT 60.545 55.000 9.47 0.00 0.00 4.24
4059 4482 1.673665 GGTTCCCACTCAGCTGCTG 60.674 63.158 23.31 23.31 0.00 4.41
4060 4483 1.673665 GTTCCCACTCAGCTGCTGG 60.674 63.158 27.79 20.25 31.51 4.85
4061 4484 3.557903 TTCCCACTCAGCTGCTGGC 62.558 63.158 27.79 0.00 42.19 4.85
4078 4501 4.771590 CTGGCTCAGCAAAGTGATAAAA 57.228 40.909 0.00 0.00 0.00 1.52
4079 4502 4.479619 CTGGCTCAGCAAAGTGATAAAAC 58.520 43.478 0.00 0.00 0.00 2.43
4080 4503 3.888323 TGGCTCAGCAAAGTGATAAAACA 59.112 39.130 0.00 0.00 0.00 2.83
4081 4504 4.523943 TGGCTCAGCAAAGTGATAAAACAT 59.476 37.500 0.00 0.00 0.00 2.71
4082 4505 4.860907 GGCTCAGCAAAGTGATAAAACATG 59.139 41.667 0.00 0.00 0.00 3.21
4083 4506 5.335897 GGCTCAGCAAAGTGATAAAACATGA 60.336 40.000 0.00 0.00 0.00 3.07
4084 4507 5.570589 GCTCAGCAAAGTGATAAAACATGAC 59.429 40.000 0.00 0.00 0.00 3.06
4085 4508 6.012658 TCAGCAAAGTGATAAAACATGACC 57.987 37.500 0.00 0.00 0.00 4.02
4086 4509 5.769662 TCAGCAAAGTGATAAAACATGACCT 59.230 36.000 0.00 0.00 0.00 3.85
4087 4510 6.072508 TCAGCAAAGTGATAAAACATGACCTC 60.073 38.462 0.00 0.00 0.00 3.85
4088 4511 5.183904 AGCAAAGTGATAAAACATGACCTCC 59.816 40.000 0.00 0.00 0.00 4.30
4089 4512 5.631026 CAAAGTGATAAAACATGACCTCCG 58.369 41.667 0.00 0.00 0.00 4.63
4090 4513 4.553330 AGTGATAAAACATGACCTCCGT 57.447 40.909 0.00 0.00 0.00 4.69
4091 4514 4.253685 AGTGATAAAACATGACCTCCGTG 58.746 43.478 0.00 0.00 37.78 4.94
4092 4515 3.006940 TGATAAAACATGACCTCCGTGC 58.993 45.455 0.00 0.00 35.17 5.34
4093 4516 1.434555 TAAAACATGACCTCCGTGCG 58.565 50.000 0.00 0.00 35.17 5.34
4094 4517 0.534203 AAAACATGACCTCCGTGCGT 60.534 50.000 0.00 0.00 35.17 5.24
4095 4518 1.227999 AAACATGACCTCCGTGCGTG 61.228 55.000 0.00 0.00 35.17 5.34
4096 4519 2.815211 CATGACCTCCGTGCGTGG 60.815 66.667 0.00 0.00 0.00 4.94
4097 4520 4.760047 ATGACCTCCGTGCGTGGC 62.760 66.667 1.88 0.00 0.00 5.01
4101 4524 4.680237 CCTCCGTGCGTGGCAGAA 62.680 66.667 0.00 0.00 40.08 3.02
4102 4525 2.434884 CTCCGTGCGTGGCAGAAT 60.435 61.111 0.00 0.00 40.08 2.40
4103 4526 1.153647 CTCCGTGCGTGGCAGAATA 60.154 57.895 0.00 0.00 40.08 1.75
4104 4527 0.530650 CTCCGTGCGTGGCAGAATAT 60.531 55.000 0.00 0.00 40.08 1.28
4105 4528 0.747852 TCCGTGCGTGGCAGAATATA 59.252 50.000 0.00 0.00 40.08 0.86
4106 4529 1.343142 TCCGTGCGTGGCAGAATATAT 59.657 47.619 0.00 0.00 40.08 0.86
4107 4530 2.559231 TCCGTGCGTGGCAGAATATATA 59.441 45.455 0.00 0.00 40.08 0.86
4108 4531 3.194755 TCCGTGCGTGGCAGAATATATAT 59.805 43.478 0.00 0.00 40.08 0.86
4109 4532 3.932710 CCGTGCGTGGCAGAATATATATT 59.067 43.478 7.72 7.72 40.08 1.28
4110 4533 5.105675 TCCGTGCGTGGCAGAATATATATTA 60.106 40.000 7.97 0.00 40.08 0.98
4111 4534 5.579119 CCGTGCGTGGCAGAATATATATTAA 59.421 40.000 7.97 0.00 40.08 1.40
4112 4535 6.257849 CCGTGCGTGGCAGAATATATATTAAT 59.742 38.462 7.97 0.00 40.08 1.40
4113 4536 7.119360 CGTGCGTGGCAGAATATATATTAATG 58.881 38.462 7.97 10.81 40.08 1.90
4114 4537 7.201522 CGTGCGTGGCAGAATATATATTAATGT 60.202 37.037 7.97 0.00 40.08 2.71
4115 4538 8.450964 GTGCGTGGCAGAATATATATTAATGTT 58.549 33.333 7.97 0.00 40.08 2.71
4116 4539 8.664798 TGCGTGGCAGAATATATATTAATGTTC 58.335 33.333 7.97 7.80 33.32 3.18
4117 4540 8.122952 GCGTGGCAGAATATATATTAATGTTCC 58.877 37.037 7.97 8.27 29.81 3.62
4118 4541 9.383519 CGTGGCAGAATATATATTAATGTTCCT 57.616 33.333 7.97 0.00 29.81 3.36
4132 4555 8.934023 ATTAATGTTCCTAACTGGACTCAAAA 57.066 30.769 0.00 0.00 46.14 2.44
4133 4556 8.934023 TTAATGTTCCTAACTGGACTCAAAAT 57.066 30.769 0.00 0.00 46.14 1.82
4134 4557 7.454260 AATGTTCCTAACTGGACTCAAAATC 57.546 36.000 0.00 0.00 46.14 2.17
4135 4558 5.935945 TGTTCCTAACTGGACTCAAAATCA 58.064 37.500 0.00 0.00 46.14 2.57
4136 4559 5.763204 TGTTCCTAACTGGACTCAAAATCAC 59.237 40.000 0.00 0.00 46.14 3.06
4137 4560 4.906618 TCCTAACTGGACTCAAAATCACC 58.093 43.478 0.00 0.00 40.56 4.02
4138 4561 4.010349 CCTAACTGGACTCAAAATCACCC 58.990 47.826 0.00 0.00 38.35 4.61
4139 4562 3.593442 AACTGGACTCAAAATCACCCA 57.407 42.857 0.00 0.00 0.00 4.51
4140 4563 3.814504 ACTGGACTCAAAATCACCCAT 57.185 42.857 0.00 0.00 0.00 4.00
4141 4564 4.118168 ACTGGACTCAAAATCACCCATT 57.882 40.909 0.00 0.00 0.00 3.16
4142 4565 3.828451 ACTGGACTCAAAATCACCCATTG 59.172 43.478 0.00 0.00 0.00 2.82
4143 4566 2.562298 TGGACTCAAAATCACCCATTGC 59.438 45.455 0.00 0.00 0.00 3.56
4144 4567 2.415893 GGACTCAAAATCACCCATTGCG 60.416 50.000 0.00 0.00 0.00 4.85
4145 4568 2.487762 GACTCAAAATCACCCATTGCGA 59.512 45.455 0.00 0.00 0.00 5.10
4146 4569 2.489329 ACTCAAAATCACCCATTGCGAG 59.511 45.455 0.00 0.00 32.95 5.03
4147 4570 2.749076 CTCAAAATCACCCATTGCGAGA 59.251 45.455 0.00 0.00 30.12 4.04
4148 4571 3.153130 TCAAAATCACCCATTGCGAGAA 58.847 40.909 0.00 0.00 0.00 2.87
4149 4572 3.571828 TCAAAATCACCCATTGCGAGAAA 59.428 39.130 0.00 0.00 0.00 2.52
4150 4573 3.575965 AAATCACCCATTGCGAGAAAC 57.424 42.857 0.00 0.00 0.00 2.78
4151 4574 2.198827 ATCACCCATTGCGAGAAACA 57.801 45.000 0.00 0.00 0.00 2.83
4152 4575 2.198827 TCACCCATTGCGAGAAACAT 57.801 45.000 0.00 0.00 0.00 2.71
4153 4576 2.083774 TCACCCATTGCGAGAAACATC 58.916 47.619 0.00 0.00 0.00 3.06
4154 4577 1.133025 CACCCATTGCGAGAAACATCC 59.867 52.381 0.00 0.00 0.00 3.51
4155 4578 0.378257 CCCATTGCGAGAAACATCCG 59.622 55.000 0.00 0.00 0.00 4.18
4162 4585 2.969443 CGAGAAACATCCGCAAGTTT 57.031 45.000 0.00 0.00 40.38 2.66
4166 4589 3.626028 GAAACATCCGCAAGTTTCTGT 57.374 42.857 13.90 0.00 46.15 3.41
4167 4590 3.300009 GAAACATCCGCAAGTTTCTGTG 58.700 45.455 13.90 0.00 46.15 3.66
4168 4591 1.238439 ACATCCGCAAGTTTCTGTGG 58.762 50.000 0.00 0.00 46.53 4.17
4169 4592 0.109597 CATCCGCAAGTTTCTGTGGC 60.110 55.000 0.00 0.00 45.07 5.01
4170 4593 1.577328 ATCCGCAAGTTTCTGTGGCG 61.577 55.000 0.00 0.00 45.07 5.69
4171 4594 2.252260 CGCAAGTTTCTGTGGCGG 59.748 61.111 0.00 0.00 43.63 6.13
4172 4595 2.644992 GCAAGTTTCTGTGGCGGG 59.355 61.111 0.00 0.00 0.00 6.13
4173 4596 2.644992 CAAGTTTCTGTGGCGGGC 59.355 61.111 0.00 0.00 0.00 6.13
4174 4597 1.898574 CAAGTTTCTGTGGCGGGCT 60.899 57.895 2.38 0.00 0.00 5.19
4175 4598 1.898574 AAGTTTCTGTGGCGGGCTG 60.899 57.895 2.38 0.00 0.00 4.85
4176 4599 2.281484 GTTTCTGTGGCGGGCTGA 60.281 61.111 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 119 3.199508 CCTCCTCTTCACCAGTCATGAAT 59.800 47.826 0.00 0.00 35.57 2.57
429 438 0.032515 TGGCTCACTTATCCCGGAGA 60.033 55.000 0.73 0.00 0.00 3.71
689 699 5.843673 TTTTTGGCTTCAACACAGACATA 57.156 34.783 0.00 0.00 0.00 2.29
1465 1632 1.604308 CCATGGTGCTGCAGGTGAA 60.604 57.895 17.12 0.00 0.00 3.18
2366 2609 2.352388 TCAAAGACGCTTATTTCGGGG 58.648 47.619 0.00 0.00 0.00 5.73
2627 2896 4.325472 ACTCGCTCCGTTTTATTTAGTTCG 59.675 41.667 0.00 0.00 0.00 3.95
3303 3695 2.360350 ACCAGCAATCCAGCCACG 60.360 61.111 0.00 0.00 34.23 4.94
3399 3800 3.981071 ACTAGATAGCCTGCACACAAA 57.019 42.857 0.00 0.00 0.00 2.83
3422 3824 6.882656 ACCACATTAGACTACTAGAGTACGA 58.117 40.000 0.00 0.00 39.06 3.43
3423 3825 6.985645 AGACCACATTAGACTACTAGAGTACG 59.014 42.308 0.00 0.00 39.06 3.67
3424 3826 8.735692 AAGACCACATTAGACTACTAGAGTAC 57.264 38.462 0.00 0.00 39.06 2.73
3464 3868 7.222611 ACTTCACAGCACAAATGAAAATTGTAC 59.777 33.333 0.00 0.00 38.90 2.90
3495 3899 4.393062 ACCAAGTCGATTCATGCTAACAAG 59.607 41.667 0.00 0.00 0.00 3.16
3497 3901 3.937814 ACCAAGTCGATTCATGCTAACA 58.062 40.909 0.00 0.00 0.00 2.41
3511 3915 4.260375 CGACAGCTTAATGCATACCAAGTC 60.260 45.833 0.00 3.96 45.94 3.01
3546 3950 3.357079 CTCACCGCCTGTGCAACC 61.357 66.667 0.00 0.00 45.03 3.77
3590 4006 0.229247 CAAACAAACGGTGCGCAATG 59.771 50.000 14.00 10.62 0.00 2.82
3674 4097 8.807948 ATATACATTTGTAAGCAACACCTTCT 57.192 30.769 0.00 0.00 38.00 2.85
3719 4142 7.205297 GCATCAGTAATCCATTTGCAATAAGT 58.795 34.615 0.00 0.00 0.00 2.24
3720 4143 6.643770 GGCATCAGTAATCCATTTGCAATAAG 59.356 38.462 0.00 0.00 0.00 1.73
3767 4190 2.105006 CAGATCCCTGGTGTTCACTG 57.895 55.000 2.98 0.00 36.77 3.66
3787 4210 5.028375 GCTTGTTACAACTTGAACAGTGTC 58.972 41.667 0.00 0.00 36.92 3.67
3828 4251 3.317711 CCAACTGCCAACTGAACAATGTA 59.682 43.478 0.00 0.00 0.00 2.29
3840 4263 4.016444 GGAGATACATTTCCAACTGCCAA 58.984 43.478 0.00 0.00 33.55 4.52
3877 4300 3.832490 GGGTAAAGGATGCCAAAAACTCT 59.168 43.478 0.00 0.00 35.05 3.24
3878 4301 3.576550 TGGGTAAAGGATGCCAAAAACTC 59.423 43.478 0.00 0.00 35.05 3.01
3879 4302 3.582164 TGGGTAAAGGATGCCAAAAACT 58.418 40.909 0.00 0.00 35.05 2.66
3880 4303 4.222810 AGATGGGTAAAGGATGCCAAAAAC 59.777 41.667 0.00 0.00 35.05 2.43
3881 4304 4.424842 AGATGGGTAAAGGATGCCAAAAA 58.575 39.130 0.00 0.00 35.05 1.94
3882 4305 4.059773 AGATGGGTAAAGGATGCCAAAA 57.940 40.909 0.00 0.00 35.05 2.44
3883 4306 3.756082 AGATGGGTAAAGGATGCCAAA 57.244 42.857 0.00 0.00 35.05 3.28
3884 4307 3.117663 GGTAGATGGGTAAAGGATGCCAA 60.118 47.826 0.00 0.00 35.05 4.52
3885 4308 2.441750 GGTAGATGGGTAAAGGATGCCA 59.558 50.000 0.00 0.00 35.05 4.92
3886 4309 2.224793 GGGTAGATGGGTAAAGGATGCC 60.225 54.545 0.00 0.00 0.00 4.40
3887 4310 2.441750 TGGGTAGATGGGTAAAGGATGC 59.558 50.000 0.00 0.00 0.00 3.91
3888 4311 4.599241 AGATGGGTAGATGGGTAAAGGATG 59.401 45.833 0.00 0.00 0.00 3.51
3889 4312 4.844348 AGATGGGTAGATGGGTAAAGGAT 58.156 43.478 0.00 0.00 0.00 3.24
3890 4313 4.295905 AGATGGGTAGATGGGTAAAGGA 57.704 45.455 0.00 0.00 0.00 3.36
3891 4314 4.905456 TGTAGATGGGTAGATGGGTAAAGG 59.095 45.833 0.00 0.00 0.00 3.11
3892 4315 5.839063 TCTGTAGATGGGTAGATGGGTAAAG 59.161 44.000 0.00 0.00 0.00 1.85
3893 4316 5.784023 TCTGTAGATGGGTAGATGGGTAAA 58.216 41.667 0.00 0.00 0.00 2.01
3894 4317 5.103215 ACTCTGTAGATGGGTAGATGGGTAA 60.103 44.000 0.00 0.00 0.00 2.85
3895 4318 4.419200 ACTCTGTAGATGGGTAGATGGGTA 59.581 45.833 0.00 0.00 0.00 3.69
3896 4319 3.207777 ACTCTGTAGATGGGTAGATGGGT 59.792 47.826 0.00 0.00 0.00 4.51
3897 4320 3.850752 ACTCTGTAGATGGGTAGATGGG 58.149 50.000 0.00 0.00 0.00 4.00
3898 4321 6.515200 CGTTAACTCTGTAGATGGGTAGATGG 60.515 46.154 3.71 0.00 0.00 3.51
3899 4322 6.039493 ACGTTAACTCTGTAGATGGGTAGATG 59.961 42.308 3.71 0.00 0.00 2.90
3900 4323 6.127793 ACGTTAACTCTGTAGATGGGTAGAT 58.872 40.000 3.71 0.00 0.00 1.98
3901 4324 5.503927 ACGTTAACTCTGTAGATGGGTAGA 58.496 41.667 3.71 0.00 0.00 2.59
3902 4325 5.831702 ACGTTAACTCTGTAGATGGGTAG 57.168 43.478 3.71 0.00 0.00 3.18
3903 4326 7.886629 ATTACGTTAACTCTGTAGATGGGTA 57.113 36.000 3.71 0.00 0.00 3.69
3904 4327 6.786967 ATTACGTTAACTCTGTAGATGGGT 57.213 37.500 3.71 0.00 0.00 4.51
3905 4328 7.490000 AGAATTACGTTAACTCTGTAGATGGG 58.510 38.462 3.71 0.00 0.00 4.00
3906 4329 9.448294 GTAGAATTACGTTAACTCTGTAGATGG 57.552 37.037 3.71 0.00 0.00 3.51
3907 4330 9.999009 TGTAGAATTACGTTAACTCTGTAGATG 57.001 33.333 3.71 0.00 32.21 2.90
3909 4332 9.440773 TCTGTAGAATTACGTTAACTCTGTAGA 57.559 33.333 3.71 5.27 32.21 2.59
3910 4333 9.488124 GTCTGTAGAATTACGTTAACTCTGTAG 57.512 37.037 3.71 3.28 32.21 2.74
3911 4334 8.454106 GGTCTGTAGAATTACGTTAACTCTGTA 58.546 37.037 3.71 0.00 32.21 2.74
3912 4335 7.040201 TGGTCTGTAGAATTACGTTAACTCTGT 60.040 37.037 3.71 0.00 32.21 3.41
3913 4336 7.310664 TGGTCTGTAGAATTACGTTAACTCTG 58.689 38.462 3.71 0.00 32.21 3.35
3914 4337 7.458409 TGGTCTGTAGAATTACGTTAACTCT 57.542 36.000 3.71 1.96 32.21 3.24
3915 4338 6.253083 GCTGGTCTGTAGAATTACGTTAACTC 59.747 42.308 3.71 0.00 32.21 3.01
3916 4339 6.098017 GCTGGTCTGTAGAATTACGTTAACT 58.902 40.000 3.71 0.00 32.21 2.24
3917 4340 5.865552 TGCTGGTCTGTAGAATTACGTTAAC 59.134 40.000 0.00 0.00 32.21 2.01
3918 4341 6.028146 TGCTGGTCTGTAGAATTACGTTAA 57.972 37.500 0.00 0.00 32.21 2.01
3919 4342 5.648178 TGCTGGTCTGTAGAATTACGTTA 57.352 39.130 0.00 0.00 32.21 3.18
3920 4343 4.530710 TGCTGGTCTGTAGAATTACGTT 57.469 40.909 0.00 0.00 32.21 3.99
3921 4344 4.433615 CATGCTGGTCTGTAGAATTACGT 58.566 43.478 0.00 0.00 32.21 3.57
3922 4345 3.804325 CCATGCTGGTCTGTAGAATTACG 59.196 47.826 0.00 0.00 31.35 3.18
3923 4346 4.811557 GTCCATGCTGGTCTGTAGAATTAC 59.188 45.833 2.68 0.00 39.03 1.89
3924 4347 4.716784 AGTCCATGCTGGTCTGTAGAATTA 59.283 41.667 2.68 0.00 39.03 1.40
3925 4348 3.521126 AGTCCATGCTGGTCTGTAGAATT 59.479 43.478 2.68 0.00 39.03 2.17
3926 4349 3.110705 AGTCCATGCTGGTCTGTAGAAT 58.889 45.455 2.68 0.00 39.03 2.40
3927 4350 2.497675 GAGTCCATGCTGGTCTGTAGAA 59.502 50.000 6.67 0.00 36.07 2.10
3928 4351 2.103373 GAGTCCATGCTGGTCTGTAGA 58.897 52.381 6.67 0.00 36.07 2.59
3929 4352 2.106566 AGAGTCCATGCTGGTCTGTAG 58.893 52.381 6.67 0.00 36.07 2.74
3930 4353 1.827344 CAGAGTCCATGCTGGTCTGTA 59.173 52.381 6.67 0.00 36.07 2.74
3931 4354 0.612229 CAGAGTCCATGCTGGTCTGT 59.388 55.000 6.67 1.40 36.07 3.41
3932 4355 0.107800 CCAGAGTCCATGCTGGTCTG 60.108 60.000 8.51 12.18 45.21 3.51
3933 4356 2.294890 CCAGAGTCCATGCTGGTCT 58.705 57.895 8.51 2.60 45.21 3.85
3934 4357 4.950479 CCAGAGTCCATGCTGGTC 57.050 61.111 8.51 0.00 45.21 4.02
3937 4360 4.264253 TGTAAATTCCAGAGTCCATGCTG 58.736 43.478 0.00 0.00 0.00 4.41
3938 4361 4.574674 TGTAAATTCCAGAGTCCATGCT 57.425 40.909 0.00 0.00 0.00 3.79
3939 4362 4.276926 GGATGTAAATTCCAGAGTCCATGC 59.723 45.833 0.00 0.00 33.21 4.06
3940 4363 5.439721 TGGATGTAAATTCCAGAGTCCATG 58.560 41.667 0.00 0.00 38.35 3.66
3941 4364 5.715439 TGGATGTAAATTCCAGAGTCCAT 57.285 39.130 0.00 0.00 38.35 3.41
3942 4365 5.044919 ACATGGATGTAAATTCCAGAGTCCA 60.045 40.000 0.00 0.00 46.06 4.02
3943 4366 5.440610 ACATGGATGTAAATTCCAGAGTCC 58.559 41.667 0.00 0.00 46.06 3.85
3944 4367 5.235186 CGACATGGATGTAAATTCCAGAGTC 59.765 44.000 13.71 13.71 46.06 3.36
3945 4368 5.104941 TCGACATGGATGTAAATTCCAGAGT 60.105 40.000 0.00 0.25 46.06 3.24
3946 4369 5.359756 TCGACATGGATGTAAATTCCAGAG 58.640 41.667 0.00 0.00 46.06 3.35
3947 4370 5.351948 TCGACATGGATGTAAATTCCAGA 57.648 39.130 0.00 0.00 46.06 3.86
3948 4371 4.512944 CCTCGACATGGATGTAAATTCCAG 59.487 45.833 0.00 0.00 46.06 3.86
3949 4372 4.080582 ACCTCGACATGGATGTAAATTCCA 60.081 41.667 0.00 0.00 46.86 3.53
3950 4373 4.451900 ACCTCGACATGGATGTAAATTCC 58.548 43.478 0.00 0.00 41.95 3.01
3951 4374 5.235186 CAGACCTCGACATGGATGTAAATTC 59.765 44.000 0.00 0.00 41.95 2.17
3952 4375 5.104941 TCAGACCTCGACATGGATGTAAATT 60.105 40.000 0.00 0.00 41.95 1.82
3953 4376 4.405680 TCAGACCTCGACATGGATGTAAAT 59.594 41.667 0.00 0.00 41.95 1.40
3954 4377 3.767131 TCAGACCTCGACATGGATGTAAA 59.233 43.478 0.00 0.00 41.95 2.01
3955 4378 3.361786 TCAGACCTCGACATGGATGTAA 58.638 45.455 0.00 0.00 41.95 2.41
3956 4379 3.012934 TCAGACCTCGACATGGATGTA 57.987 47.619 0.00 0.00 41.95 2.29
3957 4380 1.852633 TCAGACCTCGACATGGATGT 58.147 50.000 0.00 0.00 45.16 3.06
3958 4381 2.967599 TTCAGACCTCGACATGGATG 57.032 50.000 0.00 0.00 0.00 3.51
3959 4382 3.960755 TGTATTCAGACCTCGACATGGAT 59.039 43.478 0.00 0.00 0.00 3.41
3960 4383 3.361786 TGTATTCAGACCTCGACATGGA 58.638 45.455 0.00 0.00 0.00 3.41
3961 4384 3.801114 TGTATTCAGACCTCGACATGG 57.199 47.619 0.00 0.00 0.00 3.66
3962 4385 4.748892 ACTTGTATTCAGACCTCGACATG 58.251 43.478 0.00 0.00 0.00 3.21
3963 4386 5.417894 TGTACTTGTATTCAGACCTCGACAT 59.582 40.000 0.00 0.00 0.00 3.06
3964 4387 4.763279 TGTACTTGTATTCAGACCTCGACA 59.237 41.667 0.00 0.00 0.00 4.35
3965 4388 5.106237 ACTGTACTTGTATTCAGACCTCGAC 60.106 44.000 0.00 0.00 0.00 4.20
3966 4389 5.008331 ACTGTACTTGTATTCAGACCTCGA 58.992 41.667 0.00 0.00 0.00 4.04
3967 4390 5.312120 ACTGTACTTGTATTCAGACCTCG 57.688 43.478 0.00 0.00 0.00 4.63
3968 4391 7.964604 AAAACTGTACTTGTATTCAGACCTC 57.035 36.000 0.00 0.00 0.00 3.85
3969 4392 7.255139 GCAAAAACTGTACTTGTATTCAGACCT 60.255 37.037 0.00 0.00 0.00 3.85
3970 4393 6.856426 GCAAAAACTGTACTTGTATTCAGACC 59.144 38.462 0.00 0.00 0.00 3.85
3971 4394 7.639945 AGCAAAAACTGTACTTGTATTCAGAC 58.360 34.615 0.00 0.00 0.00 3.51
3972 4395 7.801716 AGCAAAAACTGTACTTGTATTCAGA 57.198 32.000 0.00 0.00 0.00 3.27
3973 4396 9.599322 CTAAGCAAAAACTGTACTTGTATTCAG 57.401 33.333 0.00 0.00 0.00 3.02
3974 4397 9.116067 ACTAAGCAAAAACTGTACTTGTATTCA 57.884 29.630 0.00 0.00 0.00 2.57
3975 4398 9.946165 AACTAAGCAAAAACTGTACTTGTATTC 57.054 29.630 0.00 0.00 0.00 1.75
3977 4400 9.730420 CAAACTAAGCAAAAACTGTACTTGTAT 57.270 29.630 0.00 0.00 0.00 2.29
3978 4401 8.948145 TCAAACTAAGCAAAAACTGTACTTGTA 58.052 29.630 0.00 0.00 0.00 2.41
3979 4402 7.822658 TCAAACTAAGCAAAAACTGTACTTGT 58.177 30.769 0.00 0.00 0.00 3.16
3980 4403 8.682128 TTCAAACTAAGCAAAAACTGTACTTG 57.318 30.769 0.00 0.00 0.00 3.16
3983 4406 9.946165 ACTATTCAAACTAAGCAAAAACTGTAC 57.054 29.630 0.00 0.00 0.00 2.90
3985 4408 9.946165 GTACTATTCAAACTAAGCAAAAACTGT 57.054 29.630 0.00 0.00 0.00 3.55
3986 4409 9.944663 TGTACTATTCAAACTAAGCAAAAACTG 57.055 29.630 0.00 0.00 0.00 3.16
3991 4414 8.726988 GGTCATGTACTATTCAAACTAAGCAAA 58.273 33.333 0.00 0.00 0.00 3.68
3992 4415 7.335924 GGGTCATGTACTATTCAAACTAAGCAA 59.664 37.037 0.00 0.00 0.00 3.91
3993 4416 6.821665 GGGTCATGTACTATTCAAACTAAGCA 59.178 38.462 0.00 0.00 0.00 3.91
3994 4417 6.260271 GGGGTCATGTACTATTCAAACTAAGC 59.740 42.308 0.00 0.00 0.00 3.09
3995 4418 7.495934 CAGGGGTCATGTACTATTCAAACTAAG 59.504 40.741 0.00 0.00 0.00 2.18
3996 4419 7.335627 CAGGGGTCATGTACTATTCAAACTAA 58.664 38.462 0.00 0.00 0.00 2.24
3997 4420 6.126883 CCAGGGGTCATGTACTATTCAAACTA 60.127 42.308 0.00 0.00 0.00 2.24
3998 4421 5.339200 CCAGGGGTCATGTACTATTCAAACT 60.339 44.000 0.00 0.00 0.00 2.66
3999 4422 4.881850 CCAGGGGTCATGTACTATTCAAAC 59.118 45.833 0.00 0.00 0.00 2.93
4000 4423 4.538490 ACCAGGGGTCATGTACTATTCAAA 59.462 41.667 0.00 0.00 0.00 2.69
4001 4424 4.108570 ACCAGGGGTCATGTACTATTCAA 58.891 43.478 0.00 0.00 0.00 2.69
4002 4425 3.731431 ACCAGGGGTCATGTACTATTCA 58.269 45.455 0.00 0.00 0.00 2.57
4003 4426 4.772886 AACCAGGGGTCATGTACTATTC 57.227 45.455 0.00 0.00 33.12 1.75
4004 4427 5.530176 AAAACCAGGGGTCATGTACTATT 57.470 39.130 0.00 0.00 33.12 1.73
4005 4428 5.253096 AGAAAAACCAGGGGTCATGTACTAT 59.747 40.000 0.00 0.00 33.12 2.12
4006 4429 4.600111 AGAAAAACCAGGGGTCATGTACTA 59.400 41.667 0.00 0.00 33.12 1.82
4007 4430 3.397955 AGAAAAACCAGGGGTCATGTACT 59.602 43.478 0.00 0.00 33.12 2.73
4008 4431 3.506067 CAGAAAAACCAGGGGTCATGTAC 59.494 47.826 0.00 0.00 33.12 2.90
4009 4432 3.396276 TCAGAAAAACCAGGGGTCATGTA 59.604 43.478 0.00 0.00 33.12 2.29
4010 4433 2.176798 TCAGAAAAACCAGGGGTCATGT 59.823 45.455 0.00 0.00 33.12 3.21
4011 4434 2.558359 GTCAGAAAAACCAGGGGTCATG 59.442 50.000 0.00 0.00 33.12 3.07
4012 4435 2.490902 GGTCAGAAAAACCAGGGGTCAT 60.491 50.000 0.00 0.00 33.12 3.06
4013 4436 1.133606 GGTCAGAAAAACCAGGGGTCA 60.134 52.381 0.00 0.00 33.12 4.02
4014 4437 1.145119 AGGTCAGAAAAACCAGGGGTC 59.855 52.381 0.00 0.00 39.39 4.46
4015 4438 1.231963 AGGTCAGAAAAACCAGGGGT 58.768 50.000 0.00 0.00 39.39 4.95
4016 4439 2.381752 AAGGTCAGAAAAACCAGGGG 57.618 50.000 0.00 0.00 39.39 4.79
4017 4440 6.152831 CCTAAATAAGGTCAGAAAAACCAGGG 59.847 42.308 0.00 0.00 40.94 4.45
4018 4441 7.158099 CCTAAATAAGGTCAGAAAAACCAGG 57.842 40.000 0.00 0.00 40.94 4.45
4034 4457 8.976033 CAGCAGCTGAGTGGGAACCTAAATAA 62.976 46.154 20.43 0.00 41.57 1.40
4035 4458 7.602719 CAGCAGCTGAGTGGGAACCTAAATA 62.603 48.000 20.43 0.00 41.57 1.40
4036 4459 6.919820 CAGCAGCTGAGTGGGAACCTAAAT 62.920 50.000 20.43 0.00 41.57 1.40
4037 4460 5.692908 CAGCAGCTGAGTGGGAACCTAAA 62.693 52.174 20.43 0.00 41.57 1.85
4038 4461 4.258430 CAGCAGCTGAGTGGGAACCTAA 62.258 54.545 20.43 0.00 41.57 2.69
4039 4462 2.782999 CAGCAGCTGAGTGGGAACCTA 61.783 57.143 20.43 0.00 41.57 3.08
4040 4463 2.121992 CAGCAGCTGAGTGGGAACCT 62.122 60.000 20.43 0.00 41.57 3.50
4041 4464 1.673665 CAGCAGCTGAGTGGGAACC 60.674 63.158 20.43 0.00 41.43 3.62
4042 4465 1.673665 CCAGCAGCTGAGTGGGAAC 60.674 63.158 24.90 0.00 32.44 3.62
4043 4466 2.752358 CCAGCAGCTGAGTGGGAA 59.248 61.111 24.90 0.00 32.44 3.97
4044 4467 4.025858 GCCAGCAGCTGAGTGGGA 62.026 66.667 27.83 0.00 38.99 4.37
4057 4480 4.022935 TGTTTTATCACTTTGCTGAGCCAG 60.023 41.667 0.23 0.00 34.12 4.85
4058 4481 3.888323 TGTTTTATCACTTTGCTGAGCCA 59.112 39.130 0.23 0.00 0.00 4.75
4059 4482 4.503741 TGTTTTATCACTTTGCTGAGCC 57.496 40.909 0.23 0.00 0.00 4.70
4060 4483 5.570589 GTCATGTTTTATCACTTTGCTGAGC 59.429 40.000 0.00 0.00 0.00 4.26
4061 4484 6.072286 AGGTCATGTTTTATCACTTTGCTGAG 60.072 38.462 0.00 0.00 0.00 3.35
4062 4485 5.769662 AGGTCATGTTTTATCACTTTGCTGA 59.230 36.000 0.00 0.00 0.00 4.26
4063 4486 6.017400 AGGTCATGTTTTATCACTTTGCTG 57.983 37.500 0.00 0.00 0.00 4.41
4064 4487 5.183904 GGAGGTCATGTTTTATCACTTTGCT 59.816 40.000 0.00 0.00 0.00 3.91
4065 4488 5.402398 GGAGGTCATGTTTTATCACTTTGC 58.598 41.667 0.00 0.00 0.00 3.68
4066 4489 5.181245 ACGGAGGTCATGTTTTATCACTTTG 59.819 40.000 0.00 0.00 0.00 2.77
4067 4490 5.181245 CACGGAGGTCATGTTTTATCACTTT 59.819 40.000 0.00 0.00 0.00 2.66
4068 4491 4.695455 CACGGAGGTCATGTTTTATCACTT 59.305 41.667 0.00 0.00 0.00 3.16
4069 4492 4.253685 CACGGAGGTCATGTTTTATCACT 58.746 43.478 0.00 0.00 0.00 3.41
4070 4493 3.181510 GCACGGAGGTCATGTTTTATCAC 60.182 47.826 0.00 0.00 0.00 3.06
4071 4494 3.006940 GCACGGAGGTCATGTTTTATCA 58.993 45.455 0.00 0.00 0.00 2.15
4072 4495 2.030457 CGCACGGAGGTCATGTTTTATC 59.970 50.000 0.00 0.00 0.00 1.75
4073 4496 2.006888 CGCACGGAGGTCATGTTTTAT 58.993 47.619 0.00 0.00 0.00 1.40
4074 4497 1.270412 ACGCACGGAGGTCATGTTTTA 60.270 47.619 0.00 0.00 0.00 1.52
4075 4498 0.534203 ACGCACGGAGGTCATGTTTT 60.534 50.000 0.00 0.00 0.00 2.43
4076 4499 1.070786 ACGCACGGAGGTCATGTTT 59.929 52.632 0.00 0.00 0.00 2.83
4077 4500 1.667830 CACGCACGGAGGTCATGTT 60.668 57.895 0.00 0.00 0.00 2.71
4078 4501 2.048222 CACGCACGGAGGTCATGT 60.048 61.111 0.00 0.00 0.00 3.21
4079 4502 2.815211 CCACGCACGGAGGTCATG 60.815 66.667 0.00 0.00 0.00 3.07
4080 4503 4.760047 GCCACGCACGGAGGTCAT 62.760 66.667 5.83 0.00 0.00 3.06
4084 4507 2.572095 TATTCTGCCACGCACGGAGG 62.572 60.000 0.00 0.00 33.79 4.30
4085 4508 0.530650 ATATTCTGCCACGCACGGAG 60.531 55.000 0.00 0.00 33.79 4.63
4086 4509 0.747852 TATATTCTGCCACGCACGGA 59.252 50.000 0.00 0.00 33.79 4.69
4087 4510 1.795768 ATATATTCTGCCACGCACGG 58.204 50.000 0.00 0.00 33.79 4.94
4088 4511 6.641176 TTAATATATATTCTGCCACGCACG 57.359 37.500 11.28 0.00 33.79 5.34
4089 4512 7.974675 ACATTAATATATATTCTGCCACGCAC 58.025 34.615 11.28 0.00 33.79 5.34
4090 4513 8.560355 AACATTAATATATATTCTGCCACGCA 57.440 30.769 11.28 0.00 36.92 5.24
4091 4514 8.122952 GGAACATTAATATATATTCTGCCACGC 58.877 37.037 11.28 0.00 0.00 5.34
4092 4515 9.383519 AGGAACATTAATATATATTCTGCCACG 57.616 33.333 11.28 0.00 0.00 4.94
4115 4538 4.263331 GGGTGATTTTGAGTCCAGTTAGGA 60.263 45.833 0.00 0.00 46.75 2.94
4116 4539 4.010349 GGGTGATTTTGAGTCCAGTTAGG 58.990 47.826 0.00 0.00 39.47 2.69
4117 4540 4.651778 TGGGTGATTTTGAGTCCAGTTAG 58.348 43.478 0.00 0.00 0.00 2.34
4118 4541 4.715534 TGGGTGATTTTGAGTCCAGTTA 57.284 40.909 0.00 0.00 0.00 2.24
4119 4542 3.593442 TGGGTGATTTTGAGTCCAGTT 57.407 42.857 0.00 0.00 0.00 3.16
4120 4543 3.814504 ATGGGTGATTTTGAGTCCAGT 57.185 42.857 0.00 0.00 0.00 4.00
4121 4544 3.367703 GCAATGGGTGATTTTGAGTCCAG 60.368 47.826 0.00 0.00 0.00 3.86
4122 4545 2.562298 GCAATGGGTGATTTTGAGTCCA 59.438 45.455 0.00 0.00 0.00 4.02
4123 4546 2.415893 CGCAATGGGTGATTTTGAGTCC 60.416 50.000 0.00 0.00 0.00 3.85
4124 4547 2.487762 TCGCAATGGGTGATTTTGAGTC 59.512 45.455 0.00 0.00 0.00 3.36
4125 4548 2.489329 CTCGCAATGGGTGATTTTGAGT 59.511 45.455 0.00 0.00 35.02 3.41
4126 4549 2.749076 TCTCGCAATGGGTGATTTTGAG 59.251 45.455 0.00 0.00 35.02 3.02
4127 4550 2.789213 TCTCGCAATGGGTGATTTTGA 58.211 42.857 0.00 0.00 35.02 2.69
4128 4551 3.574284 TTCTCGCAATGGGTGATTTTG 57.426 42.857 3.02 0.00 35.02 2.44
4129 4552 3.320541 TGTTTCTCGCAATGGGTGATTTT 59.679 39.130 3.02 0.00 35.02 1.82
4130 4553 2.890311 TGTTTCTCGCAATGGGTGATTT 59.110 40.909 3.02 0.00 35.02 2.17
4131 4554 2.513753 TGTTTCTCGCAATGGGTGATT 58.486 42.857 3.02 0.00 35.02 2.57
4132 4555 2.198827 TGTTTCTCGCAATGGGTGAT 57.801 45.000 3.02 0.00 35.02 3.06
4133 4556 2.083774 GATGTTTCTCGCAATGGGTGA 58.916 47.619 0.00 0.00 34.20 4.02
4134 4557 1.133025 GGATGTTTCTCGCAATGGGTG 59.867 52.381 0.00 0.00 0.00 4.61
4135 4558 1.463674 GGATGTTTCTCGCAATGGGT 58.536 50.000 0.00 0.00 0.00 4.51
4136 4559 0.378257 CGGATGTTTCTCGCAATGGG 59.622 55.000 0.00 0.00 0.00 4.00
4137 4560 3.903876 CGGATGTTTCTCGCAATGG 57.096 52.632 0.00 0.00 0.00 3.16
4142 4565 2.975622 GAAACTTGCGGATGTTTCTCGC 60.976 50.000 29.07 12.72 44.85 5.03
4143 4566 2.839474 GAAACTTGCGGATGTTTCTCG 58.161 47.619 29.07 0.00 44.85 4.04
4147 4570 2.034558 CCACAGAAACTTGCGGATGTTT 59.965 45.455 18.56 18.56 38.84 2.83
4148 4571 1.608590 CCACAGAAACTTGCGGATGTT 59.391 47.619 2.22 2.22 0.00 2.71
4149 4572 1.238439 CCACAGAAACTTGCGGATGT 58.762 50.000 0.00 0.00 0.00 3.06
4150 4573 0.109597 GCCACAGAAACTTGCGGATG 60.110 55.000 0.00 0.00 0.00 3.51
4151 4574 1.577328 CGCCACAGAAACTTGCGGAT 61.577 55.000 0.00 0.00 41.42 4.18
4152 4575 2.250939 CGCCACAGAAACTTGCGGA 61.251 57.895 0.00 0.00 41.42 5.54
4153 4576 2.252260 CGCCACAGAAACTTGCGG 59.748 61.111 0.00 0.00 41.42 5.69
4154 4577 2.252260 CCGCCACAGAAACTTGCG 59.748 61.111 0.00 0.00 44.47 4.85
4155 4578 2.644992 CCCGCCACAGAAACTTGC 59.355 61.111 0.00 0.00 0.00 4.01
4156 4579 1.898574 AGCCCGCCACAGAAACTTG 60.899 57.895 0.00 0.00 0.00 3.16
4157 4580 1.898574 CAGCCCGCCACAGAAACTT 60.899 57.895 0.00 0.00 0.00 2.66
4158 4581 2.281761 CAGCCCGCCACAGAAACT 60.282 61.111 0.00 0.00 0.00 2.66
4159 4582 2.281484 TCAGCCCGCCACAGAAAC 60.281 61.111 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.