Multiple sequence alignment - TraesCS3A01G379000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G379000 chr3A 100.000 4599 0 0 1 4599 628301144 628305742 0.000000e+00 8493.0
1 TraesCS3A01G379000 chr3A 95.349 43 2 0 1950 1992 20132480 20132438 8.260000e-08 69.4
2 TraesCS3A01G379000 chr3B 92.365 1886 102 14 2069 3946 648103942 648105793 0.000000e+00 2647.0
3 TraesCS3A01G379000 chr3B 91.056 1912 134 15 1 1888 648102044 648103942 0.000000e+00 2549.0
4 TraesCS3A01G379000 chr3B 90.847 295 18 3 4308 4599 648106296 648106584 2.010000e-103 387.0
5 TraesCS3A01G379000 chr3B 96.089 179 7 0 4111 4289 648106130 648106308 4.500000e-75 292.0
6 TraesCS3A01G379000 chr3B 76.887 212 29 14 3946 4138 648105920 648106130 8.140000e-18 102.0
7 TraesCS3A01G379000 chr3B 95.349 43 2 0 1950 1992 23785825 23785867 8.260000e-08 69.4
8 TraesCS3A01G379000 chr3B 94.118 34 2 0 2040 2073 27056202 27056169 8.000000e-03 52.8
9 TraesCS3A01G379000 chr3D 91.251 1886 130 17 2069 3944 485358747 485360607 0.000000e+00 2536.0
10 TraesCS3A01G379000 chr3D 91.997 1437 87 16 467 1892 485357333 485358752 0.000000e+00 1991.0
11 TraesCS3A01G379000 chr3D 90.041 482 42 1 1 476 485356686 485357167 1.820000e-173 619.0
12 TraesCS3A01G379000 chr3D 86.538 364 33 7 3900 4252 485360607 485360965 2.010000e-103 387.0
13 TraesCS3A01G379000 chr1D 84.298 484 58 14 1016 1491 366223408 366223881 1.510000e-124 457.0
14 TraesCS3A01G379000 chr1D 76.169 449 95 11 3151 3593 366224962 366225404 4.630000e-55 226.0
15 TraesCS3A01G379000 chr1D 97.674 43 1 0 1950 1992 319371268 319371310 1.770000e-09 75.0
16 TraesCS3A01G379000 chr1D 95.238 42 2 0 1951 1992 135931054 135931013 2.970000e-07 67.6
17 TraesCS3A01G379000 chr1A 83.367 499 60 19 1016 1500 465524785 465524296 1.520000e-119 440.0
18 TraesCS3A01G379000 chr1A 89.011 91 10 0 3157 3247 465523236 465523146 3.760000e-21 113.0
19 TraesCS3A01G379000 chr1A 95.238 42 2 0 1951 1992 286243011 286243052 2.970000e-07 67.6
20 TraesCS3A01G379000 chr1B 83.578 408 47 17 1095 1498 491266349 491265958 9.400000e-97 364.0
21 TraesCS3A01G379000 chr1B 100.000 28 0 0 2040 2067 678633804 678633831 8.000000e-03 52.8
22 TraesCS3A01G379000 chr1B 100.000 28 0 0 2040 2067 683383522 683383495 8.000000e-03 52.8
23 TraesCS3A01G379000 chr5D 97.778 45 1 0 1948 1992 29498103 29498147 1.370000e-10 78.7
24 TraesCS3A01G379000 chr5D 100.000 28 0 0 2040 2067 292715858 292715885 8.000000e-03 52.8
25 TraesCS3A01G379000 chr6D 93.750 48 3 0 1950 1997 436761013 436760966 6.380000e-09 73.1
26 TraesCS3A01G379000 chr6D 95.455 44 0 2 1950 1992 101231483 101231525 8.260000e-08 69.4
27 TraesCS3A01G379000 chr4B 95.349 43 2 0 1951 1993 520910734 520910692 8.260000e-08 69.4
28 TraesCS3A01G379000 chr6B 94.444 36 1 1 2040 2075 688308319 688308353 2.000000e-03 54.7
29 TraesCS3A01G379000 chr4D 96.875 32 1 0 2040 2071 503153918 503153949 2.000000e-03 54.7
30 TraesCS3A01G379000 chr4D 100.000 28 0 0 2039 2066 426785084 426785111 8.000000e-03 52.8
31 TraesCS3A01G379000 chr7B 100.000 28 0 0 2040 2067 503865937 503865964 8.000000e-03 52.8
32 TraesCS3A01G379000 chr5A 100.000 28 0 0 2040 2067 464174776 464174749 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G379000 chr3A 628301144 628305742 4598 False 8493.00 8493 100.00000 1 4599 1 chr3A.!!$F1 4598
1 TraesCS3A01G379000 chr3B 648102044 648106584 4540 False 1195.40 2647 89.44880 1 4599 5 chr3B.!!$F2 4598
2 TraesCS3A01G379000 chr3D 485356686 485360965 4279 False 1383.25 2536 89.95675 1 4252 4 chr3D.!!$F1 4251
3 TraesCS3A01G379000 chr1D 366223408 366225404 1996 False 341.50 457 80.23350 1016 3593 2 chr1D.!!$F2 2577
4 TraesCS3A01G379000 chr1A 465523146 465524785 1639 True 276.50 440 86.18900 1016 3247 2 chr1A.!!$R1 2231

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.247736 ATGAGGAGCGGTGTGTTCTC 59.752 55.0 0.0 0.0 0.0 2.87 F
1509 1733 0.117541 TACCTGCTACCCCTTCCACA 59.882 55.0 0.0 0.0 0.0 4.17 F
2013 3009 0.108041 GCTCCGTCCGTCCCAAAATA 60.108 55.0 0.0 0.0 0.0 1.40 F
2016 3012 0.251073 CCGTCCGTCCCAAAATAGGT 59.749 55.0 0.0 0.0 0.0 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1994 2990 0.108041 TATTTTGGGACGGACGGAGC 60.108 55.000 0.0 0.0 0.0 4.70 R
3314 4350 0.034059 AGGGAGACAGCAACAACTCG 59.966 55.000 0.0 0.0 0.0 4.18 R
3317 4353 0.819259 TGCAGGGAGACAGCAACAAC 60.819 55.000 0.0 0.0 39.5 3.32 R
3948 5034 1.002430 ACGGGCATATCACCATAGCAG 59.998 52.381 0.0 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.352805 CCCCCACTGGCAACTCTC 59.647 66.667 0.00 0.00 37.61 3.20
55 56 2.039613 CTCTCTTTTGAAGACCTGGGCT 59.960 50.000 0.00 0.00 33.12 5.19
78 79 3.130633 CACTCCACATCGAAGTGTTCAA 58.869 45.455 18.52 1.96 37.82 2.69
85 86 3.244078 ACATCGAAGTGTTCAACTGGCTA 60.244 43.478 0.00 0.00 39.81 3.93
112 113 2.380660 CAAAACCGTTGTTGGATGACG 58.619 47.619 0.00 0.00 34.13 4.35
140 141 3.036429 GCTCGTCATGGGCTTCCCT 62.036 63.158 3.27 0.00 45.70 4.20
160 161 0.247736 ATGAGGAGCGGTGTGTTCTC 59.752 55.000 0.00 0.00 0.00 2.87
168 169 0.813610 CGGTGTGTTCTCTGCAACCA 60.814 55.000 1.21 0.00 0.00 3.67
216 217 3.727726 TCATGAGTTGTTCTTTCTCGCA 58.272 40.909 0.00 0.00 0.00 5.10
219 220 2.731451 TGAGTTGTTCTTTCTCGCATCG 59.269 45.455 0.00 0.00 0.00 3.84
284 285 2.360350 CTTGCCCGGTGATGTGCT 60.360 61.111 0.00 0.00 0.00 4.40
288 290 1.675641 GCCCGGTGATGTGCTTCTT 60.676 57.895 0.00 0.00 0.00 2.52
304 306 1.507140 TCTTTGAGTGGTGGGTGTCT 58.493 50.000 0.00 0.00 0.00 3.41
346 348 1.521457 GCACCGCCAAGATCGATCA 60.521 57.895 26.47 0.00 0.00 2.92
377 379 1.450312 CTCACGGCCTGGTCCATTC 60.450 63.158 0.00 0.00 0.00 2.67
378 380 2.184020 CTCACGGCCTGGTCCATTCA 62.184 60.000 0.00 0.00 0.00 2.57
408 416 2.125552 CATCTTCGACGGGCAGCA 60.126 61.111 0.00 0.00 0.00 4.41
423 431 2.357034 GCAACCCTTCGTCTCGCA 60.357 61.111 0.00 0.00 0.00 5.10
481 664 1.228124 CAAGGCCGACACCAAAGGA 60.228 57.895 0.00 0.00 0.00 3.36
486 669 0.521735 GCCGACACCAAAGGAATGAC 59.478 55.000 0.00 0.00 0.00 3.06
489 672 1.806542 CGACACCAAAGGAATGACCAG 59.193 52.381 0.00 0.00 42.04 4.00
496 679 0.915364 AAGGAATGACCAGCCTCCTC 59.085 55.000 0.00 0.00 37.31 3.71
535 719 0.771127 TAAGTTGGGGCTGAGCAACT 59.229 50.000 6.82 4.67 39.27 3.16
567 765 4.363138 CTGCTCTGTTCATCAAGCGTATA 58.637 43.478 0.00 0.00 34.98 1.47
572 770 6.149129 TCTGTTCATCAAGCGTATATGTCT 57.851 37.500 0.00 0.00 0.00 3.41
583 781 5.107824 AGCGTATATGTCTCATGATGCATC 58.892 41.667 20.14 20.14 0.00 3.91
610 808 6.142817 CCACTGTATTTTTCACTTTCCTTCG 58.857 40.000 0.00 0.00 0.00 3.79
616 814 7.698970 TGTATTTTTCACTTTCCTTCGAACAAC 59.301 33.333 0.00 0.00 0.00 3.32
617 815 5.890424 TTTTCACTTTCCTTCGAACAACT 57.110 34.783 0.00 0.00 0.00 3.16
619 817 3.202906 TCACTTTCCTTCGAACAACTGG 58.797 45.455 0.00 0.00 0.00 4.00
631 829 3.126171 CGAACAACTGGAAGACACACAAA 59.874 43.478 0.00 0.00 37.43 2.83
632 830 4.662145 GAACAACTGGAAGACACACAAAG 58.338 43.478 0.00 0.00 37.43 2.77
633 831 2.423538 ACAACTGGAAGACACACAAAGC 59.576 45.455 0.00 0.00 37.43 3.51
636 834 3.356290 ACTGGAAGACACACAAAGCTTT 58.644 40.909 5.69 5.69 37.43 3.51
637 835 3.129287 ACTGGAAGACACACAAAGCTTTG 59.871 43.478 32.53 32.53 39.98 2.77
638 836 2.159254 TGGAAGACACACAAAGCTTTGC 60.159 45.455 33.72 19.58 41.79 3.68
639 837 2.111756 GAAGACACACAAAGCTTTGCG 58.888 47.619 33.72 28.06 41.79 4.85
645 843 1.333619 ACACAAAGCTTTGCGATTCGT 59.666 42.857 33.72 19.73 41.79 3.85
672 870 4.965119 AAATATCAAAGGTTGCTCGACC 57.035 40.909 0.00 0.00 40.11 4.79
739 937 2.879646 ACTCGATCTAGACCGTCCATTC 59.120 50.000 6.36 0.00 0.00 2.67
743 941 0.754217 TCTAGACCGTCCATTCCCCG 60.754 60.000 0.00 0.00 0.00 5.73
935 1135 1.152830 GCGAGATCTCTCTCCCCCT 59.847 63.158 20.26 0.00 44.36 4.79
936 1136 0.893727 GCGAGATCTCTCTCCCCCTC 60.894 65.000 20.26 0.00 44.36 4.30
941 1141 2.929738 ATCTCTCTCCCCCTCCCCCT 62.930 65.000 0.00 0.00 0.00 4.79
952 1152 4.880426 TCCCCCTCAGATCCGCCC 62.880 72.222 0.00 0.00 0.00 6.13
1461 1685 2.182030 GTCTTCCTCGGCCTCACG 59.818 66.667 0.00 0.00 0.00 4.35
1496 1720 3.863041 CCTCTGTTAAGAAGGTACCTGC 58.137 50.000 17.14 14.82 30.03 4.85
1497 1721 3.515901 CCTCTGTTAAGAAGGTACCTGCT 59.484 47.826 17.69 17.69 32.11 4.24
1499 1723 5.394333 CCTCTGTTAAGAAGGTACCTGCTAC 60.394 48.000 23.63 18.23 30.21 3.58
1507 1731 0.619543 GGTACCTGCTACCCCTTCCA 60.620 60.000 4.06 0.00 39.44 3.53
1509 1733 0.117541 TACCTGCTACCCCTTCCACA 59.882 55.000 0.00 0.00 0.00 4.17
1510 1734 1.201429 ACCTGCTACCCCTTCCACAG 61.201 60.000 0.00 0.00 0.00 3.66
1579 2162 4.720090 TGCTTAGTTAGTCTTCGACTTCG 58.280 43.478 1.45 0.00 40.28 3.79
1591 2174 6.762187 AGTCTTCGACTTCGTGATATCTCTAA 59.238 38.462 3.98 0.00 40.28 2.10
1594 2177 8.283992 TCTTCGACTTCGTGATATCTCTAATTC 58.716 37.037 3.98 2.49 40.80 2.17
1595 2178 7.492352 TCGACTTCGTGATATCTCTAATTCA 57.508 36.000 3.98 0.00 40.80 2.57
1596 2179 7.353497 TCGACTTCGTGATATCTCTAATTCAC 58.647 38.462 3.98 0.00 40.80 3.18
1597 2180 7.226918 TCGACTTCGTGATATCTCTAATTCACT 59.773 37.037 3.98 0.00 40.80 3.41
1802 2796 7.945134 AGTGCTGTATCCAATTAATTCCATTC 58.055 34.615 0.00 0.00 0.00 2.67
1823 2817 9.956720 CCATTCTGTTATTTCCATGACTAAATC 57.043 33.333 0.00 0.00 0.00 2.17
1834 2828 6.598503 TCCATGACTAAATCTAGACGAGGTA 58.401 40.000 0.00 0.00 0.00 3.08
1844 2839 6.716934 ATCTAGACGAGGTATGAAACATGT 57.283 37.500 0.00 0.00 0.00 3.21
1867 2863 3.255642 GCTTATTCTGCTGTGGGTTTTCA 59.744 43.478 0.00 0.00 0.00 2.69
1887 2883 4.025360 TCATGTGCCCATTTTAGCTCATT 58.975 39.130 0.00 0.00 40.24 2.57
1888 2884 4.467082 TCATGTGCCCATTTTAGCTCATTT 59.533 37.500 0.00 0.00 40.24 2.32
1889 2885 4.888326 TGTGCCCATTTTAGCTCATTTT 57.112 36.364 0.00 0.00 0.00 1.82
1890 2886 4.819769 TGTGCCCATTTTAGCTCATTTTC 58.180 39.130 0.00 0.00 0.00 2.29
1891 2887 4.282957 TGTGCCCATTTTAGCTCATTTTCA 59.717 37.500 0.00 0.00 0.00 2.69
1892 2888 4.627035 GTGCCCATTTTAGCTCATTTTCAC 59.373 41.667 0.00 0.00 0.00 3.18
1893 2889 4.282957 TGCCCATTTTAGCTCATTTTCACA 59.717 37.500 0.00 0.00 0.00 3.58
1894 2890 4.627035 GCCCATTTTAGCTCATTTTCACAC 59.373 41.667 0.00 0.00 0.00 3.82
1895 2891 5.567423 GCCCATTTTAGCTCATTTTCACACT 60.567 40.000 0.00 0.00 0.00 3.55
1896 2892 6.458210 CCCATTTTAGCTCATTTTCACACTT 58.542 36.000 0.00 0.00 0.00 3.16
1897 2893 6.587608 CCCATTTTAGCTCATTTTCACACTTC 59.412 38.462 0.00 0.00 0.00 3.01
1898 2894 6.306356 CCATTTTAGCTCATTTTCACACTTCG 59.694 38.462 0.00 0.00 0.00 3.79
1899 2895 6.612247 TTTTAGCTCATTTTCACACTTCGA 57.388 33.333 0.00 0.00 0.00 3.71
1900 2896 6.801539 TTTAGCTCATTTTCACACTTCGAT 57.198 33.333 0.00 0.00 0.00 3.59
1901 2897 7.899178 TTTAGCTCATTTTCACACTTCGATA 57.101 32.000 0.00 0.00 0.00 2.92
1902 2898 7.899178 TTAGCTCATTTTCACACTTCGATAA 57.101 32.000 0.00 0.00 0.00 1.75
1903 2899 6.992063 AGCTCATTTTCACACTTCGATAAT 57.008 33.333 0.00 0.00 0.00 1.28
1904 2900 7.383102 AGCTCATTTTCACACTTCGATAATT 57.617 32.000 0.00 0.00 0.00 1.40
1905 2901 8.492673 AGCTCATTTTCACACTTCGATAATTA 57.507 30.769 0.00 0.00 0.00 1.40
1906 2902 8.391106 AGCTCATTTTCACACTTCGATAATTAC 58.609 33.333 0.00 0.00 0.00 1.89
1907 2903 8.175069 GCTCATTTTCACACTTCGATAATTACA 58.825 33.333 0.00 0.00 0.00 2.41
1914 2910 8.940768 TCACACTTCGATAATTACAATCATCA 57.059 30.769 0.00 0.00 0.00 3.07
1915 2911 9.546428 TCACACTTCGATAATTACAATCATCAT 57.454 29.630 0.00 0.00 0.00 2.45
1916 2912 9.803130 CACACTTCGATAATTACAATCATCATC 57.197 33.333 0.00 0.00 0.00 2.92
1917 2913 9.546428 ACACTTCGATAATTACAATCATCATCA 57.454 29.630 0.00 0.00 0.00 3.07
1922 2918 9.559732 TCGATAATTACAATCATCATCAAAGGT 57.440 29.630 0.00 0.00 0.00 3.50
1923 2919 9.603298 CGATAATTACAATCATCATCAAAGGTG 57.397 33.333 0.00 0.00 0.00 4.00
1927 2923 8.585471 ATTACAATCATCATCAAAGGTGAACT 57.415 30.769 0.00 0.00 37.30 3.01
1928 2924 6.506500 ACAATCATCATCAAAGGTGAACTC 57.493 37.500 0.00 0.00 37.30 3.01
1929 2925 6.243900 ACAATCATCATCAAAGGTGAACTCT 58.756 36.000 0.00 0.00 37.30 3.24
1930 2926 6.150641 ACAATCATCATCAAAGGTGAACTCTG 59.849 38.462 0.00 0.00 37.30 3.35
1931 2927 4.005650 TCATCATCAAAGGTGAACTCTGC 58.994 43.478 0.00 0.00 37.30 4.26
1932 2928 3.777106 TCATCAAAGGTGAACTCTGCT 57.223 42.857 0.00 0.00 37.30 4.24
1933 2929 4.890158 TCATCAAAGGTGAACTCTGCTA 57.110 40.909 0.00 0.00 37.30 3.49
1934 2930 5.426689 TCATCAAAGGTGAACTCTGCTAT 57.573 39.130 0.00 0.00 37.30 2.97
1935 2931 6.544928 TCATCAAAGGTGAACTCTGCTATA 57.455 37.500 0.00 0.00 37.30 1.31
1936 2932 6.946340 TCATCAAAGGTGAACTCTGCTATAA 58.054 36.000 0.00 0.00 37.30 0.98
1937 2933 7.044181 TCATCAAAGGTGAACTCTGCTATAAG 58.956 38.462 0.00 0.00 37.30 1.73
1938 2934 6.360370 TCAAAGGTGAACTCTGCTATAAGT 57.640 37.500 0.00 0.00 0.00 2.24
1939 2935 6.166279 TCAAAGGTGAACTCTGCTATAAGTG 58.834 40.000 0.00 0.00 0.00 3.16
1940 2936 5.746990 AAGGTGAACTCTGCTATAAGTGT 57.253 39.130 0.00 0.00 0.00 3.55
1941 2937 5.746990 AGGTGAACTCTGCTATAAGTGTT 57.253 39.130 0.00 0.00 36.77 3.32
1942 2938 5.482908 AGGTGAACTCTGCTATAAGTGTTG 58.517 41.667 0.00 0.00 34.83 3.33
1943 2939 5.246203 AGGTGAACTCTGCTATAAGTGTTGA 59.754 40.000 0.00 0.00 34.83 3.18
1944 2940 5.578727 GGTGAACTCTGCTATAAGTGTTGAG 59.421 44.000 0.00 0.00 34.83 3.02
1945 2941 5.578727 GTGAACTCTGCTATAAGTGTTGAGG 59.421 44.000 0.00 0.00 34.83 3.86
1946 2942 5.246203 TGAACTCTGCTATAAGTGTTGAGGT 59.754 40.000 0.00 0.00 34.83 3.85
1947 2943 5.746990 ACTCTGCTATAAGTGTTGAGGTT 57.253 39.130 0.00 0.00 0.00 3.50
1948 2944 6.115448 ACTCTGCTATAAGTGTTGAGGTTT 57.885 37.500 0.00 0.00 0.00 3.27
1949 2945 6.166982 ACTCTGCTATAAGTGTTGAGGTTTC 58.833 40.000 0.00 0.00 0.00 2.78
1950 2946 6.014156 ACTCTGCTATAAGTGTTGAGGTTTCT 60.014 38.462 0.00 0.00 0.00 2.52
1951 2947 7.178628 ACTCTGCTATAAGTGTTGAGGTTTCTA 59.821 37.037 0.00 0.00 0.00 2.10
1952 2948 8.079211 TCTGCTATAAGTGTTGAGGTTTCTAT 57.921 34.615 0.00 0.00 0.00 1.98
1953 2949 8.198109 TCTGCTATAAGTGTTGAGGTTTCTATC 58.802 37.037 0.00 0.00 0.00 2.08
1954 2950 8.079211 TGCTATAAGTGTTGAGGTTTCTATCT 57.921 34.615 0.00 0.00 0.00 1.98
1955 2951 8.540388 TGCTATAAGTGTTGAGGTTTCTATCTT 58.460 33.333 0.00 0.00 0.00 2.40
1962 2958 8.697292 AGTGTTGAGGTTTCTATCTTATACTCC 58.303 37.037 0.00 0.00 0.00 3.85
1963 2959 7.927092 GTGTTGAGGTTTCTATCTTATACTCCC 59.073 40.741 0.00 0.00 0.00 4.30
1964 2960 7.844779 TGTTGAGGTTTCTATCTTATACTCCCT 59.155 37.037 0.00 0.00 0.00 4.20
1965 2961 8.361889 GTTGAGGTTTCTATCTTATACTCCCTC 58.638 40.741 0.00 0.00 36.22 4.30
1966 2962 7.011382 TGAGGTTTCTATCTTATACTCCCTCC 58.989 42.308 0.00 0.00 35.09 4.30
1967 2963 6.011481 AGGTTTCTATCTTATACTCCCTCCG 58.989 44.000 0.00 0.00 0.00 4.63
1968 2964 5.774184 GGTTTCTATCTTATACTCCCTCCGT 59.226 44.000 0.00 0.00 0.00 4.69
1969 2965 6.072008 GGTTTCTATCTTATACTCCCTCCGTC 60.072 46.154 0.00 0.00 0.00 4.79
1970 2966 5.176741 TCTATCTTATACTCCCTCCGTCC 57.823 47.826 0.00 0.00 0.00 4.79
1971 2967 2.671896 TCTTATACTCCCTCCGTCCC 57.328 55.000 0.00 0.00 0.00 4.46
1972 2968 1.854939 TCTTATACTCCCTCCGTCCCA 59.145 52.381 0.00 0.00 0.00 4.37
1973 2969 2.245546 TCTTATACTCCCTCCGTCCCAA 59.754 50.000 0.00 0.00 0.00 4.12
1974 2970 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
1975 2971 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
1976 2972 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1977 2973 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1978 2974 1.838077 ACTCCCTCCGTCCCAAAATAG 59.162 52.381 0.00 0.00 0.00 1.73
1979 2975 1.141053 CTCCCTCCGTCCCAAAATAGG 59.859 57.143 0.00 0.00 0.00 2.57
1980 2976 0.916809 CCCTCCGTCCCAAAATAGGT 59.083 55.000 0.00 0.00 0.00 3.08
1981 2977 1.408266 CCCTCCGTCCCAAAATAGGTG 60.408 57.143 0.00 0.00 0.00 4.00
1982 2978 1.557832 CCTCCGTCCCAAAATAGGTGA 59.442 52.381 0.00 0.00 0.00 4.02
1983 2979 2.629051 CTCCGTCCCAAAATAGGTGAC 58.371 52.381 0.00 0.00 0.00 3.67
1985 2981 2.235402 TCCGTCCCAAAATAGGTGACTC 59.765 50.000 0.00 0.00 43.67 3.36
1986 2982 2.027561 CCGTCCCAAAATAGGTGACTCA 60.028 50.000 0.00 0.00 43.67 3.41
1987 2983 3.558321 CCGTCCCAAAATAGGTGACTCAA 60.558 47.826 0.00 0.00 43.67 3.02
1988 2984 3.435671 CGTCCCAAAATAGGTGACTCAAC 59.564 47.826 0.00 0.00 43.67 3.18
1989 2985 4.652822 GTCCCAAAATAGGTGACTCAACT 58.347 43.478 1.31 1.31 43.67 3.16
1990 2986 5.070685 GTCCCAAAATAGGTGACTCAACTT 58.929 41.667 0.84 0.00 43.67 2.66
1991 2987 5.535030 GTCCCAAAATAGGTGACTCAACTTT 59.465 40.000 0.84 0.00 43.67 2.66
1992 2988 6.713450 GTCCCAAAATAGGTGACTCAACTTTA 59.287 38.462 0.84 0.00 43.67 1.85
1993 2989 7.393515 GTCCCAAAATAGGTGACTCAACTTTAT 59.606 37.037 0.84 0.00 43.67 1.40
1994 2990 7.393234 TCCCAAAATAGGTGACTCAACTTTATG 59.607 37.037 0.84 0.00 43.67 1.90
1995 2991 7.029563 CCAAAATAGGTGACTCAACTTTATGC 58.970 38.462 0.84 0.00 43.67 3.14
1996 2992 7.094205 CCAAAATAGGTGACTCAACTTTATGCT 60.094 37.037 0.84 0.00 43.67 3.79
1997 2993 7.617041 AAATAGGTGACTCAACTTTATGCTC 57.383 36.000 0.84 0.00 43.67 4.26
1998 2994 3.944087 AGGTGACTCAACTTTATGCTCC 58.056 45.455 0.00 0.00 32.90 4.70
1999 2995 2.673368 GGTGACTCAACTTTATGCTCCG 59.327 50.000 0.00 0.00 0.00 4.63
2000 2996 3.326747 GTGACTCAACTTTATGCTCCGT 58.673 45.455 0.00 0.00 0.00 4.69
2001 2997 3.368236 GTGACTCAACTTTATGCTCCGTC 59.632 47.826 0.00 0.00 0.00 4.79
2002 2998 2.930682 GACTCAACTTTATGCTCCGTCC 59.069 50.000 0.00 0.00 0.00 4.79
2003 2999 1.927174 CTCAACTTTATGCTCCGTCCG 59.073 52.381 0.00 0.00 0.00 4.79
2004 3000 1.274167 TCAACTTTATGCTCCGTCCGT 59.726 47.619 0.00 0.00 0.00 4.69
2005 3001 1.659098 CAACTTTATGCTCCGTCCGTC 59.341 52.381 0.00 0.00 0.00 4.79
2006 3002 0.175073 ACTTTATGCTCCGTCCGTCC 59.825 55.000 0.00 0.00 0.00 4.79
2007 3003 0.529992 CTTTATGCTCCGTCCGTCCC 60.530 60.000 0.00 0.00 0.00 4.46
2008 3004 1.259142 TTTATGCTCCGTCCGTCCCA 61.259 55.000 0.00 0.00 0.00 4.37
2009 3005 1.259142 TTATGCTCCGTCCGTCCCAA 61.259 55.000 0.00 0.00 0.00 4.12
2010 3006 1.259142 TATGCTCCGTCCGTCCCAAA 61.259 55.000 0.00 0.00 0.00 3.28
2011 3007 2.031465 GCTCCGTCCGTCCCAAAA 59.969 61.111 0.00 0.00 0.00 2.44
2012 3008 1.376812 GCTCCGTCCGTCCCAAAAT 60.377 57.895 0.00 0.00 0.00 1.82
2013 3009 0.108041 GCTCCGTCCGTCCCAAAATA 60.108 55.000 0.00 0.00 0.00 1.40
2014 3010 1.935933 CTCCGTCCGTCCCAAAATAG 58.064 55.000 0.00 0.00 0.00 1.73
2015 3011 0.538118 TCCGTCCGTCCCAAAATAGG 59.462 55.000 0.00 0.00 0.00 2.57
2016 3012 0.251073 CCGTCCGTCCCAAAATAGGT 59.749 55.000 0.00 0.00 0.00 3.08
2017 3013 1.365699 CGTCCGTCCCAAAATAGGTG 58.634 55.000 0.00 0.00 0.00 4.00
2018 3014 1.066716 CGTCCGTCCCAAAATAGGTGA 60.067 52.381 0.00 0.00 0.00 4.02
2019 3015 2.353323 GTCCGTCCCAAAATAGGTGAC 58.647 52.381 0.00 0.00 0.00 3.67
2021 3017 2.235402 TCCGTCCCAAAATAGGTGACTC 59.765 50.000 0.00 0.00 43.67 3.36
2022 3018 2.027561 CCGTCCCAAAATAGGTGACTCA 60.028 50.000 0.00 0.00 43.67 3.41
2023 3019 3.558321 CCGTCCCAAAATAGGTGACTCAA 60.558 47.826 0.00 0.00 43.67 3.02
2024 3020 3.435671 CGTCCCAAAATAGGTGACTCAAC 59.564 47.826 0.00 0.00 43.67 3.18
2025 3021 3.435671 GTCCCAAAATAGGTGACTCAACG 59.564 47.826 0.00 0.00 43.67 4.10
2026 3022 3.071892 TCCCAAAATAGGTGACTCAACGT 59.928 43.478 0.00 0.00 43.67 3.99
2027 3023 3.818773 CCCAAAATAGGTGACTCAACGTT 59.181 43.478 0.00 0.00 43.67 3.99
2028 3024 4.320202 CCCAAAATAGGTGACTCAACGTTG 60.320 45.833 22.35 22.35 43.67 4.10
2029 3025 4.274950 CCAAAATAGGTGACTCAACGTTGT 59.725 41.667 26.47 9.72 43.67 3.32
2030 3026 5.467399 CCAAAATAGGTGACTCAACGTTGTA 59.533 40.000 26.47 13.16 43.67 2.41
2031 3027 6.360329 CAAAATAGGTGACTCAACGTTGTAC 58.640 40.000 26.47 19.43 43.67 2.90
2032 3028 5.464030 AATAGGTGACTCAACGTTGTACT 57.536 39.130 26.47 17.44 43.67 2.73
2033 3029 6.579666 AATAGGTGACTCAACGTTGTACTA 57.420 37.500 26.47 18.72 43.67 1.82
2034 3030 4.924305 AGGTGACTCAACGTTGTACTAA 57.076 40.909 26.47 7.30 32.90 2.24
2035 3031 4.614946 AGGTGACTCAACGTTGTACTAAC 58.385 43.478 26.47 18.12 32.90 2.34
2036 3032 4.340381 AGGTGACTCAACGTTGTACTAACT 59.660 41.667 26.47 16.65 32.90 2.24
2037 3033 5.045872 GGTGACTCAACGTTGTACTAACTT 58.954 41.667 26.47 4.61 0.00 2.66
2038 3034 5.521372 GGTGACTCAACGTTGTACTAACTTT 59.479 40.000 26.47 3.15 0.00 2.66
2039 3035 6.697019 GGTGACTCAACGTTGTACTAACTTTA 59.303 38.462 26.47 3.63 0.00 1.85
2040 3036 7.306225 GGTGACTCAACGTTGTACTAACTTTAC 60.306 40.741 26.47 12.68 0.00 2.01
2041 3037 7.433425 GTGACTCAACGTTGTACTAACTTTACT 59.567 37.037 26.47 0.00 0.00 2.24
2042 3038 7.975616 TGACTCAACGTTGTACTAACTTTACTT 59.024 33.333 26.47 0.00 0.00 2.24
2043 3039 9.450807 GACTCAACGTTGTACTAACTTTACTTA 57.549 33.333 26.47 1.83 0.00 2.24
2044 3040 9.971922 ACTCAACGTTGTACTAACTTTACTTAT 57.028 29.630 26.47 0.00 0.00 1.73
2056 3052 9.420551 ACTAACTTTACTTATTTTGAGACGGAG 57.579 33.333 0.00 0.00 0.00 4.63
2057 3053 7.668525 AACTTTACTTATTTTGAGACGGAGG 57.331 36.000 0.00 0.00 0.00 4.30
2058 3054 6.171213 ACTTTACTTATTTTGAGACGGAGGG 58.829 40.000 0.00 0.00 0.00 4.30
2059 3055 6.013984 ACTTTACTTATTTTGAGACGGAGGGA 60.014 38.462 0.00 0.00 0.00 4.20
2060 3056 4.473477 ACTTATTTTGAGACGGAGGGAG 57.527 45.455 0.00 0.00 0.00 4.30
2061 3057 3.838903 ACTTATTTTGAGACGGAGGGAGT 59.161 43.478 0.00 0.00 0.00 3.85
2062 3058 5.021458 ACTTATTTTGAGACGGAGGGAGTA 58.979 41.667 0.00 0.00 0.00 2.59
2063 3059 5.661759 ACTTATTTTGAGACGGAGGGAGTAT 59.338 40.000 0.00 0.00 0.00 2.12
2064 3060 6.156429 ACTTATTTTGAGACGGAGGGAGTATT 59.844 38.462 0.00 0.00 0.00 1.89
2065 3061 7.343833 ACTTATTTTGAGACGGAGGGAGTATTA 59.656 37.037 0.00 0.00 0.00 0.98
2066 3062 5.593679 TTTTGAGACGGAGGGAGTATTAG 57.406 43.478 0.00 0.00 0.00 1.73
2067 3063 2.584236 TGAGACGGAGGGAGTATTAGC 58.416 52.381 0.00 0.00 0.00 3.09
2079 3075 7.068962 GGAGGGAGTATTAGCTATTCAGGTATC 59.931 44.444 0.00 0.00 34.80 2.24
2087 3083 4.954875 AGCTATTCAGGTATCTCTTGTGC 58.045 43.478 0.00 0.00 0.00 4.57
2098 3094 6.151985 AGGTATCTCTTGTGCTCGATATTAGG 59.848 42.308 0.00 0.00 0.00 2.69
2121 3117 4.702131 GGAATGCACTATGTTCTTGGTTCT 59.298 41.667 0.00 0.00 0.00 3.01
2134 3130 5.799827 TCTTGGTTCTAAATTGGTTTGGG 57.200 39.130 0.00 0.00 0.00 4.12
2190 3186 2.840038 ACTAGTGGTGAATGATGAGCCA 59.160 45.455 0.00 0.00 0.00 4.75
2297 3293 1.142870 AGCTGCAAGGTTTGTAGGTGA 59.857 47.619 10.09 0.00 46.63 4.02
2298 3294 2.162681 GCTGCAAGGTTTGTAGGTGAT 58.837 47.619 8.59 0.00 42.68 3.06
2408 3405 6.223852 GTTCTCTTAGAACCTGTGAATGTCA 58.776 40.000 8.32 0.00 46.68 3.58
2424 3421 2.355197 TGTCAATGCGAATCCGAATGT 58.645 42.857 0.00 0.00 33.50 2.71
2425 3422 2.095692 TGTCAATGCGAATCCGAATGTG 59.904 45.455 0.00 0.00 33.50 3.21
2426 3423 2.095853 GTCAATGCGAATCCGAATGTGT 59.904 45.455 0.00 0.00 33.50 3.72
2427 3424 3.308595 GTCAATGCGAATCCGAATGTGTA 59.691 43.478 0.00 0.00 33.50 2.90
2428 3425 3.555547 TCAATGCGAATCCGAATGTGTAG 59.444 43.478 0.00 0.00 33.50 2.74
2429 3426 1.934589 TGCGAATCCGAATGTGTAGG 58.065 50.000 0.00 0.00 38.22 3.18
2430 3427 0.582005 GCGAATCCGAATGTGTAGGC 59.418 55.000 0.00 0.00 38.22 3.93
2431 3428 1.806623 GCGAATCCGAATGTGTAGGCT 60.807 52.381 0.00 0.00 38.22 4.58
2432 3429 2.128035 CGAATCCGAATGTGTAGGCTC 58.872 52.381 0.00 0.00 38.22 4.70
2433 3430 2.481276 CGAATCCGAATGTGTAGGCTCA 60.481 50.000 0.00 0.00 38.22 4.26
2490 3487 2.866762 CGTAGCCTTACTGGATTGCTTC 59.133 50.000 0.00 0.00 38.35 3.86
2507 3504 1.974236 CTTCTGGAACCTGGAGAGTGT 59.026 52.381 0.00 0.00 0.00 3.55
2522 3519 5.360999 TGGAGAGTGTCTGTATTATGGAGTG 59.639 44.000 0.00 0.00 0.00 3.51
2526 3523 4.467795 AGTGTCTGTATTATGGAGTGCTGT 59.532 41.667 0.00 0.00 0.00 4.40
2618 3615 5.088026 AGACCCCTCTAATTCTGTATAGCC 58.912 45.833 0.00 0.00 0.00 3.93
2659 3656 9.476761 CTTTTGAACTTGCAGTAAATTTTTGTC 57.523 29.630 0.00 0.00 0.00 3.18
2686 3683 6.633500 TTGACACCTAGAAGAAACCAAATG 57.367 37.500 0.00 0.00 0.00 2.32
2757 3754 7.747357 GCTTGAAAGAAATGTAATTGCATTTGG 59.253 33.333 31.06 15.92 45.68 3.28
2765 3762 4.339748 TGTAATTGCATTTGGGAGTAGCA 58.660 39.130 4.11 0.00 0.00 3.49
2785 3785 3.146847 CAGGTTAGGTGGTTTTCCTGAC 58.853 50.000 0.00 0.00 43.28 3.51
2790 3790 1.421646 AGGTGGTTTTCCTGACTGAGG 59.578 52.381 0.00 0.00 44.45 3.86
2850 3850 8.821894 GCTGTTTTTACCATGTTCAAATGTAAA 58.178 29.630 0.00 0.00 0.00 2.01
2895 3895 4.946772 TGTTGTGGGTATGGTGATTACATG 59.053 41.667 0.00 0.00 0.00 3.21
2927 3928 4.096732 AGCATGGCGTTTCAGTTATTTC 57.903 40.909 0.00 0.00 0.00 2.17
2928 3929 3.119495 AGCATGGCGTTTCAGTTATTTCC 60.119 43.478 0.00 0.00 0.00 3.13
2969 3970 8.840321 GTTACATTGAACATTATGGCTACAGAT 58.160 33.333 0.00 0.00 0.00 2.90
3073 4098 5.131977 TCCAGTGGCCAATATACTTGTATGT 59.868 40.000 7.24 0.00 0.00 2.29
3074 4099 5.239306 CCAGTGGCCAATATACTTGTATGTG 59.761 44.000 7.24 0.00 0.00 3.21
3076 4101 6.318648 CAGTGGCCAATATACTTGTATGTGTT 59.681 38.462 7.24 0.00 0.00 3.32
3087 4112 6.668541 ACTTGTATGTGTTGCTTATAGCTG 57.331 37.500 0.00 0.00 42.97 4.24
3088 4113 6.173339 ACTTGTATGTGTTGCTTATAGCTGT 58.827 36.000 0.00 0.00 42.97 4.40
3153 4179 5.334319 CGTGCAAAATGCTGATTTCTATGA 58.666 37.500 3.78 0.00 45.31 2.15
3270 4303 2.880268 CAATGCCTCTCACACACAAAGA 59.120 45.455 0.00 0.00 0.00 2.52
3314 4350 4.584327 ACCTGCTGTGGAATTTTGTAAC 57.416 40.909 0.00 0.00 0.00 2.50
3317 4353 4.466828 CTGCTGTGGAATTTTGTAACGAG 58.533 43.478 0.00 0.00 0.00 4.18
3364 4400 3.760684 GGCACATCATCTTCTTCCAAAGT 59.239 43.478 0.00 0.00 0.00 2.66
3772 4808 8.540388 AGAGACATAAGGCTGTAAAATTAGTCA 58.460 33.333 0.00 0.00 0.00 3.41
3812 4852 4.870991 GTCTACTGTTGTAAAGGGCATCTC 59.129 45.833 0.00 0.00 0.00 2.75
3896 4938 6.773976 TGATGTTGGAGGGAATTAAATGTC 57.226 37.500 0.00 0.00 0.00 3.06
3946 5032 3.874383 TTCATCTGGTTGTCCTTGGAA 57.126 42.857 0.00 0.00 34.23 3.53
3947 5033 4.387026 TTCATCTGGTTGTCCTTGGAAT 57.613 40.909 0.00 0.00 34.23 3.01
3948 5034 3.955471 TCATCTGGTTGTCCTTGGAATC 58.045 45.455 0.00 0.00 34.23 2.52
3949 5035 3.588842 TCATCTGGTTGTCCTTGGAATCT 59.411 43.478 0.00 0.00 34.23 2.40
3950 5036 3.423539 TCTGGTTGTCCTTGGAATCTG 57.576 47.619 0.00 0.00 34.23 2.90
3951 5037 1.815003 CTGGTTGTCCTTGGAATCTGC 59.185 52.381 0.00 0.00 34.23 4.26
3970 5184 2.158682 TGCTATGGTGATATGCCCGTTT 60.159 45.455 0.00 0.00 0.00 3.60
3978 5192 5.186021 TGGTGATATGCCCGTTTTTATTGTT 59.814 36.000 0.00 0.00 0.00 2.83
4022 5238 4.935352 TTGGGACTGGAAGATTTTGTTG 57.065 40.909 0.00 0.00 37.43 3.33
4023 5239 3.909732 TGGGACTGGAAGATTTTGTTGT 58.090 40.909 0.00 0.00 37.43 3.32
4028 5244 5.519927 GGACTGGAAGATTTTGTTGTTGTTG 59.480 40.000 0.00 0.00 37.43 3.33
4029 5245 5.418676 ACTGGAAGATTTTGTTGTTGTTGG 58.581 37.500 0.00 0.00 37.43 3.77
4032 5248 4.570369 GGAAGATTTTGTTGTTGTTGGTGG 59.430 41.667 0.00 0.00 0.00 4.61
4050 5266 1.769465 TGGTGTGTTACTTGGGCTGTA 59.231 47.619 0.00 0.00 0.00 2.74
4062 5278 3.500448 TGGGCTGTATGTGACTGAAAA 57.500 42.857 0.00 0.00 0.00 2.29
4063 5279 3.411446 TGGGCTGTATGTGACTGAAAAG 58.589 45.455 0.00 0.00 0.00 2.27
4067 5283 5.221244 GGGCTGTATGTGACTGAAAAGTTTT 60.221 40.000 0.00 0.00 0.00 2.43
4068 5284 5.687285 GGCTGTATGTGACTGAAAAGTTTTG 59.313 40.000 5.36 0.00 0.00 2.44
4070 5286 6.751888 GCTGTATGTGACTGAAAAGTTTTGTT 59.248 34.615 5.36 0.00 0.00 2.83
4071 5287 7.253750 GCTGTATGTGACTGAAAAGTTTTGTTG 60.254 37.037 5.36 0.00 0.00 3.33
4072 5288 7.598278 TGTATGTGACTGAAAAGTTTTGTTGT 58.402 30.769 5.36 1.65 0.00 3.32
4076 5292 6.758886 TGTGACTGAAAAGTTTTGTTGTTGTT 59.241 30.769 5.36 0.00 0.00 2.83
4084 5326 7.676731 AAAGTTTTGTTGTTGTTTGCTTTTG 57.323 28.000 0.00 0.00 0.00 2.44
4087 5329 7.254137 AGTTTTGTTGTTGTTTGCTTTTGTTT 58.746 26.923 0.00 0.00 0.00 2.83
4091 5333 4.637574 TGTTGTTTGCTTTTGTTTCGTG 57.362 36.364 0.00 0.00 0.00 4.35
4128 5370 5.240891 ACTTCTGTCATATCTGTGTTGTGG 58.759 41.667 0.00 0.00 0.00 4.17
4129 5371 3.599343 TCTGTCATATCTGTGTTGTGGC 58.401 45.455 0.00 0.00 0.00 5.01
4140 5409 1.342819 GTGTTGTGGCCTGGCATTTTA 59.657 47.619 22.05 0.00 0.00 1.52
4191 5460 0.882927 GTCCTAGCGTTGCACACCAA 60.883 55.000 0.00 0.00 0.00 3.67
4289 5560 1.473788 GGCATTTGGATTGATGGTGCC 60.474 52.381 0.00 0.00 43.09 5.01
4290 5561 1.207570 GCATTTGGATTGATGGTGCCA 59.792 47.619 0.00 0.00 0.00 4.92
4291 5562 2.158871 GCATTTGGATTGATGGTGCCAT 60.159 45.455 2.95 2.95 39.69 4.40
4292 5563 3.683281 GCATTTGGATTGATGGTGCCATT 60.683 43.478 5.08 0.00 36.70 3.16
4293 5564 4.519213 CATTTGGATTGATGGTGCCATTT 58.481 39.130 5.08 0.00 36.70 2.32
4294 5565 4.637387 TTTGGATTGATGGTGCCATTTT 57.363 36.364 5.08 0.00 36.70 1.82
4295 5566 4.637387 TTGGATTGATGGTGCCATTTTT 57.363 36.364 5.08 0.00 36.70 1.94
4318 5589 3.932545 TTTTGAACGGGATTGATGGTG 57.067 42.857 0.00 0.00 0.00 4.17
4319 5590 1.173043 TTGAACGGGATTGATGGTGC 58.827 50.000 0.00 0.00 0.00 5.01
4320 5591 0.679640 TGAACGGGATTGATGGTGCC 60.680 55.000 0.00 0.00 0.00 5.01
4374 5647 2.359354 CACCGCGGATTTGGGACA 60.359 61.111 35.90 0.00 0.00 4.02
4400 5673 2.509561 GCGCGAGAAGGGAACTCC 60.510 66.667 12.10 0.00 42.68 3.85
4435 5708 0.250295 TTCTTCAGTTCAGCCCGTGG 60.250 55.000 0.00 0.00 0.00 4.94
4445 5718 3.056328 GCCCGTGGAAGTGGAAGC 61.056 66.667 0.00 0.00 0.00 3.86
4446 5719 2.742372 CCCGTGGAAGTGGAAGCG 60.742 66.667 0.00 0.00 0.00 4.68
4447 5720 2.742372 CCGTGGAAGTGGAAGCGG 60.742 66.667 0.00 0.00 0.00 5.52
4448 5721 2.342279 CGTGGAAGTGGAAGCGGA 59.658 61.111 0.00 0.00 0.00 5.54
4449 5722 1.301401 CGTGGAAGTGGAAGCGGAA 60.301 57.895 0.00 0.00 0.00 4.30
4450 5723 1.291877 CGTGGAAGTGGAAGCGGAAG 61.292 60.000 0.00 0.00 0.00 3.46
4508 5781 1.666189 GACACTGCTTATCGCTTTCCC 59.334 52.381 0.00 0.00 40.11 3.97
4515 5788 0.825410 TTATCGCTTTCCCGCTGGTA 59.175 50.000 0.00 0.00 0.00 3.25
4516 5789 0.825410 TATCGCTTTCCCGCTGGTAA 59.175 50.000 0.00 0.00 0.00 2.85
4542 5815 4.368808 CGTGGACCGTGCGCAAAG 62.369 66.667 14.00 9.40 0.00 2.77
4580 5854 3.009916 AGTGGAGGCTTTCATCTGACAAT 59.990 43.478 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.224646 GCCCAGGTCTTCAAAAGAGAGT 60.225 50.000 0.00 0.00 38.41 3.24
38 39 1.202927 TGGAGCCCAGGTCTTCAAAAG 60.203 52.381 0.00 0.00 0.00 2.27
55 56 1.338107 ACACTTCGATGTGGAGTGGA 58.662 50.000 28.62 0.00 41.84 4.02
78 79 0.038310 GTTTTGGAGGGCTAGCCAGT 59.962 55.000 34.09 21.32 37.98 4.00
85 86 0.396556 AACAACGGTTTTGGAGGGCT 60.397 50.000 0.00 0.00 31.83 5.19
112 113 1.078759 CATGACGAGCAAGACGGTCC 61.079 60.000 4.14 0.00 39.03 4.46
140 141 1.476891 GAGAACACACCGCTCCTCATA 59.523 52.381 0.00 0.00 0.00 2.15
160 161 1.351017 TCCTTAGGGACTTGGTTGCAG 59.649 52.381 0.00 0.00 41.75 4.41
197 198 3.369147 CGATGCGAGAAAGAACAACTCAT 59.631 43.478 0.00 0.00 0.00 2.90
198 199 2.731451 CGATGCGAGAAAGAACAACTCA 59.269 45.455 0.00 0.00 0.00 3.41
200 201 2.069273 CCGATGCGAGAAAGAACAACT 58.931 47.619 0.00 0.00 0.00 3.16
216 217 0.179084 CACTTCGTGCCATACCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
284 285 1.843851 AGACACCCACCACTCAAAGAA 59.156 47.619 0.00 0.00 0.00 2.52
288 290 0.472471 GGAAGACACCCACCACTCAA 59.528 55.000 0.00 0.00 0.00 3.02
304 306 4.802051 GGGGCATGCGAGCAGGAA 62.802 66.667 14.16 0.00 35.83 3.36
346 348 3.279285 CGTGAGCATGATGACGGAT 57.721 52.632 15.33 0.00 0.00 4.18
377 379 4.381270 GTCGAAGATGTTGCGATATCTCTG 59.619 45.833 13.14 9.11 40.67 3.35
378 380 4.541779 GTCGAAGATGTTGCGATATCTCT 58.458 43.478 13.14 4.76 40.67 3.10
408 416 0.173708 GAGATGCGAGACGAAGGGTT 59.826 55.000 0.00 0.00 0.00 4.11
423 431 3.056250 GTCCTGGATATCATGCACGAGAT 60.056 47.826 4.83 0.00 0.00 2.75
481 664 2.370445 CGGGAGGAGGCTGGTCATT 61.370 63.158 0.00 0.00 0.00 2.57
535 719 1.620819 GAACAGAGCAGGAAGACCAGA 59.379 52.381 0.00 0.00 38.94 3.86
567 765 2.173996 TGGGTGATGCATCATGAGACAT 59.826 45.455 30.89 11.88 39.30 3.06
572 770 1.282738 ACAGTGGGTGATGCATCATGA 59.717 47.619 30.89 15.60 39.30 3.07
583 781 5.301805 AGGAAAGTGAAAAATACAGTGGGTG 59.698 40.000 0.00 0.00 0.00 4.61
610 808 4.662145 CTTTGTGTGTCTTCCAGTTGTTC 58.338 43.478 0.00 0.00 0.00 3.18
616 814 3.699067 CAAAGCTTTGTGTGTCTTCCAG 58.301 45.455 27.59 0.74 33.59 3.86
617 815 2.159254 GCAAAGCTTTGTGTGTCTTCCA 60.159 45.455 33.47 0.00 40.24 3.53
619 817 2.111756 CGCAAAGCTTTGTGTGTCTTC 58.888 47.619 34.27 18.16 42.17 2.87
631 829 3.347958 TTTTTCACGAATCGCAAAGCT 57.652 38.095 1.15 0.00 0.00 3.74
658 856 2.251642 GCACGGTCGAGCAACCTTT 61.252 57.895 15.89 0.00 37.15 3.11
698 896 3.840666 AGTGGAGGATAAGCAGAAGACAA 59.159 43.478 0.00 0.00 0.00 3.18
935 1135 4.880426 GGGCGGATCTGAGGGGGA 62.880 72.222 5.48 0.00 0.00 4.81
1338 1562 1.738099 GAGGTTGCTGACGATGCGT 60.738 57.895 0.00 0.00 45.10 5.24
1461 1685 4.459089 GAGGCGGACCAGGACAGC 62.459 72.222 5.50 5.50 39.06 4.40
1496 1720 0.909610 TCTGGCTGTGGAAGGGGTAG 60.910 60.000 0.00 0.00 0.00 3.18
1497 1721 0.253160 ATCTGGCTGTGGAAGGGGTA 60.253 55.000 0.00 0.00 0.00 3.69
1499 1723 1.225704 GATCTGGCTGTGGAAGGGG 59.774 63.158 0.00 0.00 0.00 4.79
1507 1731 1.107114 CTACCACGAGATCTGGCTGT 58.893 55.000 0.00 2.29 31.13 4.40
1509 1733 0.396417 AGCTACCACGAGATCTGGCT 60.396 55.000 0.00 0.00 31.13 4.75
1510 1734 0.461961 AAGCTACCACGAGATCTGGC 59.538 55.000 0.00 0.00 31.13 4.85
1534 2117 6.238320 GCAAGAGCTAAATCTCACAAATCGAT 60.238 38.462 0.00 0.00 37.91 3.59
1812 2806 8.100508 TCATACCTCGTCTAGATTTAGTCATG 57.899 38.462 0.00 0.00 0.00 3.07
1823 2817 4.504461 GCACATGTTTCATACCTCGTCTAG 59.496 45.833 0.00 0.00 0.00 2.43
1834 2828 5.184479 ACAGCAGAATAAGCACATGTTTCAT 59.816 36.000 9.31 0.00 0.00 2.57
1844 2839 2.584835 AACCCACAGCAGAATAAGCA 57.415 45.000 0.00 0.00 0.00 3.91
1867 2863 5.046448 TGAAAATGAGCTAAAATGGGCACAT 60.046 36.000 0.00 0.00 40.35 3.21
1888 2884 9.377312 TGATGATTGTAATTATCGAAGTGTGAA 57.623 29.630 0.00 0.00 35.00 3.18
1889 2885 8.940768 TGATGATTGTAATTATCGAAGTGTGA 57.059 30.769 0.00 0.00 35.00 3.58
1890 2886 9.803130 GATGATGATTGTAATTATCGAAGTGTG 57.197 33.333 0.00 0.00 35.00 3.82
1891 2887 9.546428 TGATGATGATTGTAATTATCGAAGTGT 57.454 29.630 0.00 0.00 35.00 3.55
1896 2892 9.559732 ACCTTTGATGATGATTGTAATTATCGA 57.440 29.630 0.00 0.00 35.00 3.59
1897 2893 9.603298 CACCTTTGATGATGATTGTAATTATCG 57.397 33.333 5.31 0.00 35.00 2.92
1901 2897 9.028284 AGTTCACCTTTGATGATGATTGTAATT 57.972 29.630 0.00 0.00 0.00 1.40
1902 2898 8.585471 AGTTCACCTTTGATGATGATTGTAAT 57.415 30.769 0.00 0.00 0.00 1.89
1903 2899 7.884877 AGAGTTCACCTTTGATGATGATTGTAA 59.115 33.333 0.00 0.00 0.00 2.41
1904 2900 7.335171 CAGAGTTCACCTTTGATGATGATTGTA 59.665 37.037 0.00 0.00 0.00 2.41
1905 2901 6.150641 CAGAGTTCACCTTTGATGATGATTGT 59.849 38.462 0.00 0.00 0.00 2.71
1906 2902 6.552629 CAGAGTTCACCTTTGATGATGATTG 58.447 40.000 0.00 0.00 0.00 2.67
1907 2903 5.125097 GCAGAGTTCACCTTTGATGATGATT 59.875 40.000 0.00 0.00 0.00 2.57
1908 2904 4.639310 GCAGAGTTCACCTTTGATGATGAT 59.361 41.667 0.00 0.00 0.00 2.45
1909 2905 4.005650 GCAGAGTTCACCTTTGATGATGA 58.994 43.478 0.00 0.00 0.00 2.92
1910 2906 4.008330 AGCAGAGTTCACCTTTGATGATG 58.992 43.478 0.00 0.00 0.00 3.07
1911 2907 4.298103 AGCAGAGTTCACCTTTGATGAT 57.702 40.909 0.00 0.00 0.00 2.45
1912 2908 3.777106 AGCAGAGTTCACCTTTGATGA 57.223 42.857 0.00 0.00 0.00 2.92
1913 2909 6.820656 ACTTATAGCAGAGTTCACCTTTGATG 59.179 38.462 0.00 0.00 0.00 3.07
1914 2910 6.820656 CACTTATAGCAGAGTTCACCTTTGAT 59.179 38.462 0.00 0.00 0.00 2.57
1915 2911 6.166279 CACTTATAGCAGAGTTCACCTTTGA 58.834 40.000 0.00 0.00 0.00 2.69
1916 2912 5.934625 ACACTTATAGCAGAGTTCACCTTTG 59.065 40.000 0.00 0.00 0.00 2.77
1917 2913 6.115448 ACACTTATAGCAGAGTTCACCTTT 57.885 37.500 0.00 0.00 0.00 3.11
1918 2914 5.746990 ACACTTATAGCAGAGTTCACCTT 57.253 39.130 0.00 0.00 0.00 3.50
1919 2915 5.246203 TCAACACTTATAGCAGAGTTCACCT 59.754 40.000 0.00 0.00 0.00 4.00
1920 2916 5.479306 TCAACACTTATAGCAGAGTTCACC 58.521 41.667 0.00 0.00 0.00 4.02
1921 2917 5.578727 CCTCAACACTTATAGCAGAGTTCAC 59.421 44.000 0.00 0.00 0.00 3.18
1922 2918 5.246203 ACCTCAACACTTATAGCAGAGTTCA 59.754 40.000 0.00 0.00 0.00 3.18
1923 2919 5.725362 ACCTCAACACTTATAGCAGAGTTC 58.275 41.667 0.00 0.00 0.00 3.01
1924 2920 5.746990 ACCTCAACACTTATAGCAGAGTT 57.253 39.130 0.00 0.00 0.00 3.01
1925 2921 5.746990 AACCTCAACACTTATAGCAGAGT 57.253 39.130 0.00 0.00 0.00 3.24
1926 2922 6.402222 AGAAACCTCAACACTTATAGCAGAG 58.598 40.000 0.00 0.00 0.00 3.35
1927 2923 6.360370 AGAAACCTCAACACTTATAGCAGA 57.640 37.500 0.00 0.00 0.00 4.26
1928 2924 8.200792 AGATAGAAACCTCAACACTTATAGCAG 58.799 37.037 0.00 0.00 0.00 4.24
1929 2925 8.079211 AGATAGAAACCTCAACACTTATAGCA 57.921 34.615 0.00 0.00 0.00 3.49
1930 2926 8.950208 AAGATAGAAACCTCAACACTTATAGC 57.050 34.615 0.00 0.00 0.00 2.97
1936 2932 8.697292 GGAGTATAAGATAGAAACCTCAACACT 58.303 37.037 0.00 0.00 0.00 3.55
1937 2933 7.927092 GGGAGTATAAGATAGAAACCTCAACAC 59.073 40.741 0.00 0.00 0.00 3.32
1938 2934 7.844779 AGGGAGTATAAGATAGAAACCTCAACA 59.155 37.037 0.00 0.00 0.00 3.33
1939 2935 8.252624 AGGGAGTATAAGATAGAAACCTCAAC 57.747 38.462 0.00 0.00 0.00 3.18
1940 2936 7.509659 GGAGGGAGTATAAGATAGAAACCTCAA 59.490 40.741 0.00 0.00 41.84 3.02
1941 2937 7.011382 GGAGGGAGTATAAGATAGAAACCTCA 58.989 42.308 0.00 0.00 41.84 3.86
1942 2938 6.151480 CGGAGGGAGTATAAGATAGAAACCTC 59.849 46.154 0.00 0.00 39.92 3.85
1943 2939 6.011481 CGGAGGGAGTATAAGATAGAAACCT 58.989 44.000 0.00 0.00 0.00 3.50
1944 2940 5.774184 ACGGAGGGAGTATAAGATAGAAACC 59.226 44.000 0.00 0.00 0.00 3.27
1945 2941 6.072008 GGACGGAGGGAGTATAAGATAGAAAC 60.072 46.154 0.00 0.00 0.00 2.78
1946 2942 6.008960 GGACGGAGGGAGTATAAGATAGAAA 58.991 44.000 0.00 0.00 0.00 2.52
1947 2943 5.516238 GGGACGGAGGGAGTATAAGATAGAA 60.516 48.000 0.00 0.00 0.00 2.10
1948 2944 4.018597 GGGACGGAGGGAGTATAAGATAGA 60.019 50.000 0.00 0.00 0.00 1.98
1949 2945 4.263816 TGGGACGGAGGGAGTATAAGATAG 60.264 50.000 0.00 0.00 0.00 2.08
1950 2946 3.659195 TGGGACGGAGGGAGTATAAGATA 59.341 47.826 0.00 0.00 0.00 1.98
1951 2947 2.449730 TGGGACGGAGGGAGTATAAGAT 59.550 50.000 0.00 0.00 0.00 2.40
1952 2948 1.854939 TGGGACGGAGGGAGTATAAGA 59.145 52.381 0.00 0.00 0.00 2.10
1953 2949 2.376695 TGGGACGGAGGGAGTATAAG 57.623 55.000 0.00 0.00 0.00 1.73
1954 2950 2.852714 TTGGGACGGAGGGAGTATAA 57.147 50.000 0.00 0.00 0.00 0.98
1955 2951 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
1956 2952 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
1957 2953 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1958 2954 1.838077 CTATTTTGGGACGGAGGGAGT 59.162 52.381 0.00 0.00 0.00 3.85
1959 2955 1.141053 CCTATTTTGGGACGGAGGGAG 59.859 57.143 0.00 0.00 0.00 4.30
1960 2956 1.209621 CCTATTTTGGGACGGAGGGA 58.790 55.000 0.00 0.00 0.00 4.20
1961 2957 0.916809 ACCTATTTTGGGACGGAGGG 59.083 55.000 0.00 0.00 0.00 4.30
1962 2958 1.557832 TCACCTATTTTGGGACGGAGG 59.442 52.381 0.00 0.00 0.00 4.30
1963 2959 2.236395 AGTCACCTATTTTGGGACGGAG 59.764 50.000 0.00 0.00 34.61 4.63
1964 2960 2.235402 GAGTCACCTATTTTGGGACGGA 59.765 50.000 0.00 0.00 34.61 4.69
1965 2961 2.027561 TGAGTCACCTATTTTGGGACGG 60.028 50.000 0.00 0.00 34.61 4.79
1966 2962 3.328382 TGAGTCACCTATTTTGGGACG 57.672 47.619 0.00 0.00 34.61 4.79
1967 2963 4.652822 AGTTGAGTCACCTATTTTGGGAC 58.347 43.478 0.00 0.00 0.00 4.46
1968 2964 4.993705 AGTTGAGTCACCTATTTTGGGA 57.006 40.909 0.00 0.00 0.00 4.37
1969 2965 7.538575 CATAAAGTTGAGTCACCTATTTTGGG 58.461 38.462 0.00 0.00 0.00 4.12
1970 2966 7.029563 GCATAAAGTTGAGTCACCTATTTTGG 58.970 38.462 0.00 0.00 0.00 3.28
1971 2967 7.820648 AGCATAAAGTTGAGTCACCTATTTTG 58.179 34.615 0.00 0.00 0.00 2.44
1972 2968 7.121315 GGAGCATAAAGTTGAGTCACCTATTTT 59.879 37.037 0.00 0.00 0.00 1.82
1973 2969 6.599638 GGAGCATAAAGTTGAGTCACCTATTT 59.400 38.462 0.00 0.00 0.00 1.40
1974 2970 6.116126 GGAGCATAAAGTTGAGTCACCTATT 58.884 40.000 0.00 0.00 0.00 1.73
1975 2971 5.675538 GGAGCATAAAGTTGAGTCACCTAT 58.324 41.667 0.00 0.00 0.00 2.57
1976 2972 4.381612 CGGAGCATAAAGTTGAGTCACCTA 60.382 45.833 0.00 0.00 0.00 3.08
1977 2973 3.617531 CGGAGCATAAAGTTGAGTCACCT 60.618 47.826 0.00 0.00 0.00 4.00
1978 2974 2.673368 CGGAGCATAAAGTTGAGTCACC 59.327 50.000 0.00 0.00 0.00 4.02
1979 2975 3.326747 ACGGAGCATAAAGTTGAGTCAC 58.673 45.455 0.00 0.00 0.00 3.67
1980 2976 3.585862 GACGGAGCATAAAGTTGAGTCA 58.414 45.455 0.00 0.00 0.00 3.41
1981 2977 2.930682 GGACGGAGCATAAAGTTGAGTC 59.069 50.000 0.00 0.00 0.00 3.36
1982 2978 2.674177 CGGACGGAGCATAAAGTTGAGT 60.674 50.000 0.00 0.00 0.00 3.41
1983 2979 1.927174 CGGACGGAGCATAAAGTTGAG 59.073 52.381 0.00 0.00 0.00 3.02
1984 2980 1.274167 ACGGACGGAGCATAAAGTTGA 59.726 47.619 0.00 0.00 0.00 3.18
1985 2981 1.659098 GACGGACGGAGCATAAAGTTG 59.341 52.381 0.00 0.00 0.00 3.16
1986 2982 1.405121 GGACGGACGGAGCATAAAGTT 60.405 52.381 0.00 0.00 0.00 2.66
1987 2983 0.175073 GGACGGACGGAGCATAAAGT 59.825 55.000 0.00 0.00 0.00 2.66
1988 2984 0.529992 GGGACGGACGGAGCATAAAG 60.530 60.000 0.00 0.00 0.00 1.85
1989 2985 1.259142 TGGGACGGACGGAGCATAAA 61.259 55.000 0.00 0.00 0.00 1.40
1990 2986 1.259142 TTGGGACGGACGGAGCATAA 61.259 55.000 0.00 0.00 0.00 1.90
1991 2987 1.259142 TTTGGGACGGACGGAGCATA 61.259 55.000 0.00 0.00 0.00 3.14
1992 2988 2.119484 TTTTGGGACGGACGGAGCAT 62.119 55.000 0.00 0.00 0.00 3.79
1993 2989 2.119484 ATTTTGGGACGGACGGAGCA 62.119 55.000 0.00 0.00 0.00 4.26
1994 2990 0.108041 TATTTTGGGACGGACGGAGC 60.108 55.000 0.00 0.00 0.00 4.70
1995 2991 1.472728 CCTATTTTGGGACGGACGGAG 60.473 57.143 0.00 0.00 0.00 4.63
1996 2992 0.538118 CCTATTTTGGGACGGACGGA 59.462 55.000 0.00 0.00 0.00 4.69
1997 2993 0.251073 ACCTATTTTGGGACGGACGG 59.749 55.000 0.00 0.00 0.00 4.79
1998 2994 1.066716 TCACCTATTTTGGGACGGACG 60.067 52.381 0.00 0.00 0.00 4.79
1999 2995 2.027469 AGTCACCTATTTTGGGACGGAC 60.027 50.000 0.00 0.00 34.61 4.79
2000 2996 2.235402 GAGTCACCTATTTTGGGACGGA 59.765 50.000 0.00 0.00 34.61 4.69
2001 2997 2.027561 TGAGTCACCTATTTTGGGACGG 60.028 50.000 0.00 0.00 34.61 4.79
2002 2998 3.328382 TGAGTCACCTATTTTGGGACG 57.672 47.619 0.00 0.00 34.61 4.79
2003 2999 3.435671 CGTTGAGTCACCTATTTTGGGAC 59.564 47.826 0.00 0.00 0.00 4.46
2004 3000 3.071892 ACGTTGAGTCACCTATTTTGGGA 59.928 43.478 0.00 0.00 0.00 4.37
2005 3001 3.408634 ACGTTGAGTCACCTATTTTGGG 58.591 45.455 0.00 0.00 0.00 4.12
2006 3002 4.274950 ACAACGTTGAGTCACCTATTTTGG 59.725 41.667 33.66 1.96 0.00 3.28
2007 3003 5.418310 ACAACGTTGAGTCACCTATTTTG 57.582 39.130 33.66 3.09 0.00 2.44
2008 3004 6.285990 AGTACAACGTTGAGTCACCTATTTT 58.714 36.000 33.66 9.67 0.00 1.82
2009 3005 5.850614 AGTACAACGTTGAGTCACCTATTT 58.149 37.500 33.66 9.88 0.00 1.40
2010 3006 5.464030 AGTACAACGTTGAGTCACCTATT 57.536 39.130 33.66 10.40 0.00 1.73
2011 3007 6.208204 AGTTAGTACAACGTTGAGTCACCTAT 59.792 38.462 33.66 11.14 0.00 2.57
2012 3008 5.532406 AGTTAGTACAACGTTGAGTCACCTA 59.468 40.000 33.66 18.29 0.00 3.08
2013 3009 4.340381 AGTTAGTACAACGTTGAGTCACCT 59.660 41.667 33.66 18.13 0.00 4.00
2014 3010 4.614946 AGTTAGTACAACGTTGAGTCACC 58.385 43.478 33.66 16.35 0.00 4.02
2015 3011 6.579491 AAAGTTAGTACAACGTTGAGTCAC 57.421 37.500 33.66 22.38 0.00 3.67
2016 3012 7.483307 AGTAAAGTTAGTACAACGTTGAGTCA 58.517 34.615 33.66 13.41 0.00 3.41
2017 3013 7.920908 AGTAAAGTTAGTACAACGTTGAGTC 57.079 36.000 33.66 20.92 0.00 3.36
2018 3014 9.971922 ATAAGTAAAGTTAGTACAACGTTGAGT 57.028 29.630 33.66 20.63 0.00 3.41
2030 3026 9.420551 CTCCGTCTCAAAATAAGTAAAGTTAGT 57.579 33.333 0.00 0.00 0.00 2.24
2031 3027 8.870879 CCTCCGTCTCAAAATAAGTAAAGTTAG 58.129 37.037 0.00 0.00 0.00 2.34
2032 3028 7.820872 CCCTCCGTCTCAAAATAAGTAAAGTTA 59.179 37.037 0.00 0.00 0.00 2.24
2033 3029 6.653740 CCCTCCGTCTCAAAATAAGTAAAGTT 59.346 38.462 0.00 0.00 0.00 2.66
2034 3030 6.013984 TCCCTCCGTCTCAAAATAAGTAAAGT 60.014 38.462 0.00 0.00 0.00 2.66
2035 3031 6.403878 TCCCTCCGTCTCAAAATAAGTAAAG 58.596 40.000 0.00 0.00 0.00 1.85
2036 3032 6.013984 ACTCCCTCCGTCTCAAAATAAGTAAA 60.014 38.462 0.00 0.00 0.00 2.01
2037 3033 5.482878 ACTCCCTCCGTCTCAAAATAAGTAA 59.517 40.000 0.00 0.00 0.00 2.24
2038 3034 5.021458 ACTCCCTCCGTCTCAAAATAAGTA 58.979 41.667 0.00 0.00 0.00 2.24
2039 3035 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
2040 3036 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
2041 3037 6.555463 AATACTCCCTCCGTCTCAAAATAA 57.445 37.500 0.00 0.00 0.00 1.40
2042 3038 6.239232 GCTAATACTCCCTCCGTCTCAAAATA 60.239 42.308 0.00 0.00 0.00 1.40
2043 3039 5.453480 GCTAATACTCCCTCCGTCTCAAAAT 60.453 44.000 0.00 0.00 0.00 1.82
2044 3040 4.142004 GCTAATACTCCCTCCGTCTCAAAA 60.142 45.833 0.00 0.00 0.00 2.44
2045 3041 3.383825 GCTAATACTCCCTCCGTCTCAAA 59.616 47.826 0.00 0.00 0.00 2.69
2046 3042 2.957006 GCTAATACTCCCTCCGTCTCAA 59.043 50.000 0.00 0.00 0.00 3.02
2047 3043 2.175069 AGCTAATACTCCCTCCGTCTCA 59.825 50.000 0.00 0.00 0.00 3.27
2048 3044 2.866351 AGCTAATACTCCCTCCGTCTC 58.134 52.381 0.00 0.00 0.00 3.36
2049 3045 4.661247 ATAGCTAATACTCCCTCCGTCT 57.339 45.455 0.00 0.00 0.00 4.18
2050 3046 4.765856 TGAATAGCTAATACTCCCTCCGTC 59.234 45.833 0.00 0.00 0.00 4.79
2051 3047 4.737578 TGAATAGCTAATACTCCCTCCGT 58.262 43.478 0.00 0.00 0.00 4.69
2052 3048 4.158764 CCTGAATAGCTAATACTCCCTCCG 59.841 50.000 0.00 0.00 0.00 4.63
2053 3049 5.088026 ACCTGAATAGCTAATACTCCCTCC 58.912 45.833 0.00 0.00 0.00 4.30
2054 3050 7.837187 AGATACCTGAATAGCTAATACTCCCTC 59.163 40.741 0.00 0.00 0.00 4.30
2055 3051 7.714500 AGATACCTGAATAGCTAATACTCCCT 58.286 38.462 0.00 0.00 0.00 4.20
2056 3052 7.837187 AGAGATACCTGAATAGCTAATACTCCC 59.163 40.741 0.00 0.00 0.00 4.30
2057 3053 8.817092 AGAGATACCTGAATAGCTAATACTCC 57.183 38.462 0.00 0.00 0.00 3.85
2059 3055 9.594936 ACAAGAGATACCTGAATAGCTAATACT 57.405 33.333 0.00 0.00 0.00 2.12
2060 3056 9.632807 CACAAGAGATACCTGAATAGCTAATAC 57.367 37.037 0.00 0.00 0.00 1.89
2061 3057 8.307483 GCACAAGAGATACCTGAATAGCTAATA 58.693 37.037 0.00 0.00 0.00 0.98
2062 3058 7.016072 AGCACAAGAGATACCTGAATAGCTAAT 59.984 37.037 0.00 0.00 0.00 1.73
2063 3059 6.325028 AGCACAAGAGATACCTGAATAGCTAA 59.675 38.462 0.00 0.00 0.00 3.09
2064 3060 5.835819 AGCACAAGAGATACCTGAATAGCTA 59.164 40.000 0.00 0.00 0.00 3.32
2065 3061 4.653341 AGCACAAGAGATACCTGAATAGCT 59.347 41.667 0.00 0.00 0.00 3.32
2066 3062 4.954875 AGCACAAGAGATACCTGAATAGC 58.045 43.478 0.00 0.00 0.00 2.97
2067 3063 5.009110 TCGAGCACAAGAGATACCTGAATAG 59.991 44.000 0.00 0.00 0.00 1.73
2079 3075 4.855715 TCCCTAATATCGAGCACAAGAG 57.144 45.455 0.00 0.00 0.00 2.85
2087 3083 6.634805 ACATAGTGCATTCCCTAATATCGAG 58.365 40.000 0.00 0.00 0.00 4.04
2098 3094 4.702131 AGAACCAAGAACATAGTGCATTCC 59.298 41.667 0.00 0.00 0.00 3.01
2121 3117 2.569404 GTGATGCCCCCAAACCAATTTA 59.431 45.455 0.00 0.00 0.00 1.40
2156 3152 4.159693 TCACCACTAGTACACATGGACATC 59.840 45.833 14.27 0.00 36.04 3.06
2208 3204 3.814504 ATGGACCAAAGGTTGTGAGAT 57.185 42.857 0.00 0.00 35.25 2.75
2297 3293 4.839121 TGCCACCTAGTTTGTCGAAATAT 58.161 39.130 0.00 0.00 0.00 1.28
2298 3294 4.274602 TGCCACCTAGTTTGTCGAAATA 57.725 40.909 0.00 0.00 0.00 1.40
2354 3350 1.480789 TAGGCGCAGAATCCAGTACA 58.519 50.000 10.83 0.00 0.00 2.90
2355 3351 2.596904 TTAGGCGCAGAATCCAGTAC 57.403 50.000 10.83 0.00 0.00 2.73
2402 3399 3.378112 ACATTCGGATTCGCATTGACATT 59.622 39.130 0.00 0.00 36.13 2.71
2408 3405 2.872245 CCTACACATTCGGATTCGCATT 59.128 45.455 0.00 0.00 36.13 3.56
2424 3421 4.777896 ACCAATCTTAGAAGTGAGCCTACA 59.222 41.667 0.00 0.00 0.00 2.74
2425 3422 5.346181 ACCAATCTTAGAAGTGAGCCTAC 57.654 43.478 0.00 0.00 0.00 3.18
2426 3423 5.721960 AGAACCAATCTTAGAAGTGAGCCTA 59.278 40.000 0.00 0.00 33.39 3.93
2427 3424 4.534103 AGAACCAATCTTAGAAGTGAGCCT 59.466 41.667 0.00 0.00 33.39 4.58
2428 3425 4.837972 AGAACCAATCTTAGAAGTGAGCC 58.162 43.478 0.00 0.00 33.39 4.70
2469 3466 2.604046 AGCAATCCAGTAAGGCTACG 57.396 50.000 0.00 0.00 37.29 3.51
2490 3487 1.274728 CAGACACTCTCCAGGTTCCAG 59.725 57.143 0.00 0.00 0.00 3.86
2507 3504 7.041721 CACTAAACAGCACTCCATAATACAGA 58.958 38.462 0.00 0.00 0.00 3.41
2522 3519 8.628882 AGTAATTTGTTTTGTCACTAAACAGC 57.371 30.769 15.61 7.23 43.85 4.40
2552 3549 3.872511 TCATATTTTGCACAAGGGCAG 57.127 42.857 0.00 0.00 45.88 4.85
2600 3597 7.952671 TGTACTTGGCTATACAGAATTAGAGG 58.047 38.462 0.00 0.00 0.00 3.69
2641 3638 5.827568 ATGCGACAAAAATTTACTGCAAG 57.172 34.783 7.33 0.00 42.29 4.01
2657 3654 3.232213 TCTTCTAGGTGTCAATGCGAC 57.768 47.619 0.00 0.00 45.61 5.19
2659 3656 3.125316 GGTTTCTTCTAGGTGTCAATGCG 59.875 47.826 0.00 0.00 0.00 4.73
2686 3683 8.801715 TCTGCAAGAGAAAATATTGACAAAAC 57.198 30.769 0.00 0.00 38.67 2.43
2720 3717 3.738830 TCTTTCAAGCAAAAGCAGCAT 57.261 38.095 0.00 0.00 36.41 3.79
2757 3754 1.569653 ACCACCTAACCTGCTACTCC 58.430 55.000 0.00 0.00 0.00 3.85
2765 3762 3.053826 AGTCAGGAAAACCACCTAACCT 58.946 45.455 0.00 0.00 35.84 3.50
2785 3785 4.761739 TGTTTTGGCATACTTTCTCCTCAG 59.238 41.667 0.00 0.00 0.00 3.35
2790 3790 8.986477 ATAATTGTGTTTTGGCATACTTTCTC 57.014 30.769 0.00 0.00 0.00 2.87
2816 3816 6.655078 ACATGGTAAAAACAGCAGAGAAAT 57.345 33.333 0.00 0.00 0.00 2.17
2869 3869 6.722328 TGTAATCACCATACCCACAACATTA 58.278 36.000 0.00 0.00 0.00 1.90
2895 3895 4.558538 AACGCCATGCTTTCTTCATATC 57.441 40.909 0.00 0.00 0.00 1.63
2927 3928 9.529325 TTCAATGTAACAGAGAAATATACGAGG 57.471 33.333 0.00 0.00 0.00 4.63
3073 4098 4.026744 AGAGAGGACAGCTATAAGCAACA 58.973 43.478 1.22 0.00 45.56 3.33
3074 4099 4.340950 AGAGAGAGGACAGCTATAAGCAAC 59.659 45.833 1.22 0.00 45.56 4.17
3076 4101 4.177537 AGAGAGAGGACAGCTATAAGCA 57.822 45.455 1.22 0.00 45.56 3.91
3085 4110 6.982852 TGTAAACTACAAAGAGAGAGGACAG 58.017 40.000 0.00 0.00 35.38 3.51
3087 4112 7.435305 ACTTGTAAACTACAAAGAGAGAGGAC 58.565 38.462 1.28 0.00 46.90 3.85
3088 4113 7.598759 ACTTGTAAACTACAAAGAGAGAGGA 57.401 36.000 1.28 0.00 46.90 3.71
3111 4137 4.598062 CACGGAAGGAAACAAAGAAGAAC 58.402 43.478 0.00 0.00 0.00 3.01
3114 4140 2.357637 TGCACGGAAGGAAACAAAGAAG 59.642 45.455 0.00 0.00 0.00 2.85
3153 4179 4.933400 ACTTCAGACTACAAACACAAACGT 59.067 37.500 0.00 0.00 0.00 3.99
3314 4350 0.034059 AGGGAGACAGCAACAACTCG 59.966 55.000 0.00 0.00 0.00 4.18
3317 4353 0.819259 TGCAGGGAGACAGCAACAAC 60.819 55.000 0.00 0.00 39.50 3.32
3364 4400 3.445008 ACAATAGCCAAGGAGACTGAGA 58.555 45.455 0.00 0.00 42.68 3.27
3541 4577 6.897966 AGATGTACATGAGGAATACGGGATAT 59.102 38.462 14.43 0.00 0.00 1.63
3938 5024 3.114606 TCACCATAGCAGATTCCAAGGA 58.885 45.455 0.00 0.00 0.00 3.36
3946 5032 2.093288 CGGGCATATCACCATAGCAGAT 60.093 50.000 0.00 0.00 0.00 2.90
3947 5033 1.276138 CGGGCATATCACCATAGCAGA 59.724 52.381 0.00 0.00 0.00 4.26
3948 5034 1.002430 ACGGGCATATCACCATAGCAG 59.998 52.381 0.00 0.00 0.00 4.24
3949 5035 1.055849 ACGGGCATATCACCATAGCA 58.944 50.000 0.00 0.00 0.00 3.49
3950 5036 2.185004 AACGGGCATATCACCATAGC 57.815 50.000 0.00 0.00 0.00 2.97
3951 5037 6.817765 ATAAAAACGGGCATATCACCATAG 57.182 37.500 0.00 0.00 0.00 2.23
3978 5192 8.950208 CAAACAAGTTGGGGAAAAATAGTTTA 57.050 30.769 7.96 0.00 33.18 2.01
4010 5226 5.063312 CACCACCAACAACAACAAAATCTTC 59.937 40.000 0.00 0.00 0.00 2.87
4022 5238 3.428316 CCAAGTAACACACCACCAACAAC 60.428 47.826 0.00 0.00 0.00 3.32
4023 5239 2.755655 CCAAGTAACACACCACCAACAA 59.244 45.455 0.00 0.00 0.00 2.83
4028 5244 0.179001 AGCCCAAGTAACACACCACC 60.179 55.000 0.00 0.00 0.00 4.61
4029 5245 0.951558 CAGCCCAAGTAACACACCAC 59.048 55.000 0.00 0.00 0.00 4.16
4032 5248 3.188460 CACATACAGCCCAAGTAACACAC 59.812 47.826 0.00 0.00 0.00 3.82
4050 5266 6.928492 ACAACAACAAAACTTTTCAGTCACAT 59.072 30.769 0.00 0.00 30.45 3.21
4062 5278 6.370433 ACAAAAGCAAACAACAACAAAACT 57.630 29.167 0.00 0.00 0.00 2.66
4063 5279 7.443218 AAACAAAAGCAAACAACAACAAAAC 57.557 28.000 0.00 0.00 0.00 2.43
4067 5283 4.508124 ACGAAACAAAAGCAAACAACAACA 59.492 33.333 0.00 0.00 0.00 3.33
4068 5284 4.838111 CACGAAACAAAAGCAAACAACAAC 59.162 37.500 0.00 0.00 0.00 3.32
4070 5286 3.120854 GCACGAAACAAAAGCAAACAACA 60.121 39.130 0.00 0.00 0.00 3.33
4071 5287 3.122780 AGCACGAAACAAAAGCAAACAAC 59.877 39.130 0.00 0.00 0.00 3.32
4072 5288 3.122613 CAGCACGAAACAAAAGCAAACAA 59.877 39.130 0.00 0.00 0.00 2.83
4076 5292 1.203523 ACCAGCACGAAACAAAAGCAA 59.796 42.857 0.00 0.00 0.00 3.91
4084 5326 4.689345 AGTTAGACAATACCAGCACGAAAC 59.311 41.667 0.00 0.00 0.00 2.78
4087 5329 4.219944 AGAAGTTAGACAATACCAGCACGA 59.780 41.667 0.00 0.00 0.00 4.35
4091 5333 5.479306 TGACAGAAGTTAGACAATACCAGC 58.521 41.667 0.00 0.00 0.00 4.85
4128 5370 8.076178 CACTAACTACAATATAAAATGCCAGGC 58.924 37.037 3.66 3.66 0.00 4.85
4129 5371 9.337396 TCACTAACTACAATATAAAATGCCAGG 57.663 33.333 0.00 0.00 0.00 4.45
4140 5409 7.712639 CAGAACAGGCATCACTAACTACAATAT 59.287 37.037 0.00 0.00 0.00 1.28
4169 5438 1.663388 TGTGCAACGCTAGGACACG 60.663 57.895 0.00 0.00 42.39 4.49
4191 5460 4.341487 GTTTTGGCTCCTGGTAATAAGGT 58.659 43.478 0.00 0.00 36.14 3.50
4297 5568 3.553922 GCACCATCAATCCCGTTCAAAAA 60.554 43.478 0.00 0.00 0.00 1.94
4298 5569 2.029470 GCACCATCAATCCCGTTCAAAA 60.029 45.455 0.00 0.00 0.00 2.44
4299 5570 1.543802 GCACCATCAATCCCGTTCAAA 59.456 47.619 0.00 0.00 0.00 2.69
4300 5571 1.173043 GCACCATCAATCCCGTTCAA 58.827 50.000 0.00 0.00 0.00 2.69
4301 5572 0.679640 GGCACCATCAATCCCGTTCA 60.680 55.000 0.00 0.00 0.00 3.18
4302 5573 0.679640 TGGCACCATCAATCCCGTTC 60.680 55.000 0.00 0.00 0.00 3.95
4303 5574 0.033208 ATGGCACCATCAATCCCGTT 60.033 50.000 0.00 0.00 29.42 4.44
4304 5575 1.614711 ATGGCACCATCAATCCCGT 59.385 52.632 0.00 0.00 29.42 5.28
4305 5576 4.585070 ATGGCACCATCAATCCCG 57.415 55.556 0.00 0.00 29.42 5.14
4313 5584 1.002257 TTCGCACTGATGGCACCAT 60.002 52.632 0.66 0.66 39.69 3.55
4314 5585 1.965930 GTTCGCACTGATGGCACCA 60.966 57.895 0.00 0.00 0.00 4.17
4315 5586 1.237285 AAGTTCGCACTGATGGCACC 61.237 55.000 0.00 0.00 31.60 5.01
4316 5587 0.593128 AAAGTTCGCACTGATGGCAC 59.407 50.000 0.00 0.00 31.60 5.01
4317 5588 0.874390 GAAAGTTCGCACTGATGGCA 59.126 50.000 0.00 0.00 31.60 4.92
4318 5589 0.179215 CGAAAGTTCGCACTGATGGC 60.179 55.000 0.00 0.00 44.26 4.40
4319 5590 3.955429 CGAAAGTTCGCACTGATGG 57.045 52.632 0.00 0.00 44.26 3.51
4340 5613 1.952133 TGACCACGTTCGCCTTTCG 60.952 57.895 0.00 0.00 40.15 3.46
4374 5647 3.691744 CTTCTCGCGCGGCTCTCTT 62.692 63.158 31.69 0.00 0.00 2.85
4381 5654 4.436998 AGTTCCCTTCTCGCGCGG 62.437 66.667 31.69 20.60 0.00 6.46
4384 5657 2.202623 CGGAGTTCCCTTCTCGCG 60.203 66.667 0.00 0.00 33.26 5.87
4394 5667 3.195698 GCACGCCATCCGGAGTTC 61.196 66.667 11.34 0.00 43.76 3.01
4435 5708 2.391389 CCGCTTCCGCTTCCACTTC 61.391 63.158 0.00 0.00 0.00 3.01
4447 5720 3.491652 GACTGCCGCTTCCGCTTC 61.492 66.667 0.00 0.00 0.00 3.86
4448 5721 4.008933 AGACTGCCGCTTCCGCTT 62.009 61.111 0.00 0.00 0.00 4.68
4449 5722 4.749310 CAGACTGCCGCTTCCGCT 62.749 66.667 0.00 0.00 0.00 5.52
4536 5809 3.737172 CGAAGTGCCCCCTTTGCG 61.737 66.667 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.