Multiple sequence alignment - TraesCS3A01G378900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G378900 chr3A 100.000 3085 0 0 1 3085 628221218 628218134 0.000000e+00 5698
1 TraesCS3A01G378900 chr3A 87.333 150 18 1 2937 3085 640842556 640842705 1.470000e-38 171
2 TraesCS3A01G378900 chr3D 93.233 2187 88 21 300 2463 485233120 485230971 0.000000e+00 3164
3 TraesCS3A01G378900 chr3D 87.798 377 22 7 2568 2937 485230875 485230516 1.320000e-113 420
4 TraesCS3A01G378900 chr3D 87.582 153 18 1 2934 3085 390673348 390673500 3.160000e-40 176
5 TraesCS3A01G378900 chr3B 91.339 2286 135 25 386 2634 647944541 647942282 0.000000e+00 3066
6 TraesCS3A01G378900 chr3B 91.050 1229 66 12 300 1492 647970052 647968832 0.000000e+00 1620
7 TraesCS3A01G378900 chr1D 87.432 1480 118 37 886 2334 433060441 433061883 0.000000e+00 1640
8 TraesCS3A01G378900 chr1D 87.136 1407 108 38 967 2331 433092598 433093973 0.000000e+00 1528
9 TraesCS3A01G378900 chr1D 87.500 152 18 1 2935 3085 482827678 482827527 1.140000e-39 174
10 TraesCS3A01G378900 chr1B 84.397 1692 158 49 692 2331 584603494 584605131 0.000000e+00 1567
11 TraesCS3A01G378900 chr1B 82.004 2006 210 88 415 2331 584619816 584621759 0.000000e+00 1565
12 TraesCS3A01G378900 chr1B 84.382 1684 166 49 692 2331 584653928 584655558 0.000000e+00 1563
13 TraesCS3A01G378900 chr1B 81.954 2006 211 88 415 2331 584574455 584576398 0.000000e+00 1559
14 TraesCS3A01G378900 chr1B 89.510 143 13 2 2796 2937 520780256 520780397 2.440000e-41 180
15 TraesCS3A01G378900 chr1A 86.837 1451 130 30 879 2296 531366890 531368312 0.000000e+00 1565
16 TraesCS3A01G378900 chr1A 83.860 1710 149 74 675 2331 531512839 531514474 0.000000e+00 1511
17 TraesCS3A01G378900 chr1A 78.804 184 18 10 415 584 531561466 531561642 1.510000e-18 104
18 TraesCS3A01G378900 chrUn 88.925 614 34 10 300 887 250505140 250505745 0.000000e+00 726
19 TraesCS3A01G378900 chr5D 89.510 143 14 1 2793 2935 370357098 370357239 2.440000e-41 180
20 TraesCS3A01G378900 chr5A 88.966 145 15 1 2793 2937 539071783 539071640 8.790000e-41 178
21 TraesCS3A01G378900 chr4A 89.781 137 13 1 2801 2937 24955310 24955175 1.140000e-39 174
22 TraesCS3A01G378900 chr4A 86.842 152 18 2 2935 3085 732769035 732769185 5.290000e-38 169
23 TraesCS3A01G378900 chr4A 87.500 144 16 2 2793 2936 662196989 662196848 6.840000e-37 165
24 TraesCS3A01G378900 chr7A 87.333 150 17 2 2934 3081 222649509 222649658 1.470000e-38 171
25 TraesCS3A01G378900 chr7D 86.928 153 16 4 2935 3085 3103638 3103488 5.290000e-38 169
26 TraesCS3A01G378900 chr7D 86.928 153 16 4 2935 3085 3160130 3160280 5.290000e-38 169
27 TraesCS3A01G378900 chr7D 86.842 152 19 1 2935 3085 47447839 47447990 5.290000e-38 169
28 TraesCS3A01G378900 chr7D 86.897 145 18 1 2793 2937 556999579 556999436 8.850000e-36 161
29 TraesCS3A01G378900 chr2D 86.842 152 19 1 2935 3085 604074591 604074440 5.290000e-38 169
30 TraesCS3A01G378900 chr6D 87.586 145 17 1 2793 2937 61019537 61019680 1.900000e-37 167
31 TraesCS3A01G378900 chr4D 87.050 139 17 1 2793 2931 51922463 51922326 4.120000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G378900 chr3A 628218134 628221218 3084 True 5698 5698 100.0000 1 3085 1 chr3A.!!$R1 3084
1 TraesCS3A01G378900 chr3D 485230516 485233120 2604 True 1792 3164 90.5155 300 2937 2 chr3D.!!$R1 2637
2 TraesCS3A01G378900 chr3B 647942282 647944541 2259 True 3066 3066 91.3390 386 2634 1 chr3B.!!$R1 2248
3 TraesCS3A01G378900 chr3B 647968832 647970052 1220 True 1620 1620 91.0500 300 1492 1 chr3B.!!$R2 1192
4 TraesCS3A01G378900 chr1D 433060441 433061883 1442 False 1640 1640 87.4320 886 2334 1 chr1D.!!$F1 1448
5 TraesCS3A01G378900 chr1D 433092598 433093973 1375 False 1528 1528 87.1360 967 2331 1 chr1D.!!$F2 1364
6 TraesCS3A01G378900 chr1B 584603494 584605131 1637 False 1567 1567 84.3970 692 2331 1 chr1B.!!$F3 1639
7 TraesCS3A01G378900 chr1B 584619816 584621759 1943 False 1565 1565 82.0040 415 2331 1 chr1B.!!$F4 1916
8 TraesCS3A01G378900 chr1B 584653928 584655558 1630 False 1563 1563 84.3820 692 2331 1 chr1B.!!$F5 1639
9 TraesCS3A01G378900 chr1B 584574455 584576398 1943 False 1559 1559 81.9540 415 2331 1 chr1B.!!$F2 1916
10 TraesCS3A01G378900 chr1A 531366890 531368312 1422 False 1565 1565 86.8370 879 2296 1 chr1A.!!$F1 1417
11 TraesCS3A01G378900 chr1A 531512839 531514474 1635 False 1511 1511 83.8600 675 2331 1 chr1A.!!$F2 1656
12 TraesCS3A01G378900 chrUn 250505140 250505745 605 False 726 726 88.9250 300 887 1 chrUn.!!$F1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.034089 GGCCCTGGTTTACTCATGCT 60.034 55.0 0.0 0.0 0.0 3.79 F
936 1025 0.036388 ACACGCATTCTCCACCGATT 60.036 50.0 0.0 0.0 0.0 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1526 1690 0.094730 CGGACGGCATTTCGAAGTTC 59.905 55.0 0.0 0.0 0.00 3.01 R
2608 2848 0.033011 AGGCTGATCCAGTACCTCGT 60.033 55.0 0.0 0.0 37.29 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.540824 CAGTACTGCCTTTTCTTTTGAGC 58.459 43.478 10.54 0.00 0.00 4.26
37 38 4.036734 CAGTACTGCCTTTTCTTTTGAGCA 59.963 41.667 10.54 0.00 0.00 4.26
38 39 4.644685 AGTACTGCCTTTTCTTTTGAGCAA 59.355 37.500 0.00 0.00 0.00 3.91
39 40 4.470334 ACTGCCTTTTCTTTTGAGCAAA 57.530 36.364 0.00 0.00 0.00 3.68
40 41 4.831107 ACTGCCTTTTCTTTTGAGCAAAA 58.169 34.783 8.00 8.00 37.90 2.44
41 42 5.244755 ACTGCCTTTTCTTTTGAGCAAAAA 58.755 33.333 9.39 0.00 39.49 1.94
53 54 7.692908 TTTTGAGCAAAAAGTGTACTATTGC 57.307 32.000 19.52 19.52 43.44 3.56
54 55 5.029650 TGAGCAAAAAGTGTACTATTGCG 57.970 39.130 20.30 0.00 45.59 4.85
55 56 4.513692 TGAGCAAAAAGTGTACTATTGCGT 59.486 37.500 20.30 13.45 45.59 5.24
56 57 4.783242 AGCAAAAAGTGTACTATTGCGTG 58.217 39.130 20.30 3.33 45.59 5.34
57 58 4.513692 AGCAAAAAGTGTACTATTGCGTGA 59.486 37.500 20.30 0.00 45.59 4.35
58 59 5.008217 AGCAAAAAGTGTACTATTGCGTGAA 59.992 36.000 20.30 0.00 45.59 3.18
59 60 5.683743 GCAAAAAGTGTACTATTGCGTGAAA 59.316 36.000 15.21 0.00 38.36 2.69
60 61 6.362283 GCAAAAAGTGTACTATTGCGTGAAAT 59.638 34.615 15.21 0.00 38.36 2.17
61 62 7.535940 GCAAAAAGTGTACTATTGCGTGAAATA 59.464 33.333 15.21 0.00 38.36 1.40
62 63 8.837059 CAAAAAGTGTACTATTGCGTGAAATAC 58.163 33.333 0.00 0.00 0.00 1.89
63 64 7.661127 AAAGTGTACTATTGCGTGAAATACA 57.339 32.000 0.00 0.00 0.00 2.29
64 65 7.661127 AAGTGTACTATTGCGTGAAATACAA 57.339 32.000 0.00 0.00 0.00 2.41
65 66 7.661127 AGTGTACTATTGCGTGAAATACAAA 57.339 32.000 0.00 0.00 0.00 2.83
66 67 7.739295 AGTGTACTATTGCGTGAAATACAAAG 58.261 34.615 0.00 0.00 0.00 2.77
67 68 7.601130 AGTGTACTATTGCGTGAAATACAAAGA 59.399 33.333 0.00 0.00 0.00 2.52
68 69 8.225107 GTGTACTATTGCGTGAAATACAAAGAA 58.775 33.333 0.00 0.00 0.00 2.52
69 70 8.775527 TGTACTATTGCGTGAAATACAAAGAAA 58.224 29.630 0.00 0.00 0.00 2.52
70 71 9.601971 GTACTATTGCGTGAAATACAAAGAAAA 57.398 29.630 0.00 0.00 0.00 2.29
71 72 8.502161 ACTATTGCGTGAAATACAAAGAAAAC 57.498 30.769 0.00 0.00 0.00 2.43
72 73 8.132362 ACTATTGCGTGAAATACAAAGAAAACA 58.868 29.630 0.00 0.00 0.00 2.83
73 74 7.763172 ATTGCGTGAAATACAAAGAAAACAA 57.237 28.000 0.00 0.00 0.00 2.83
74 75 7.582435 TTGCGTGAAATACAAAGAAAACAAA 57.418 28.000 0.00 0.00 0.00 2.83
75 76 7.582435 TGCGTGAAATACAAAGAAAACAAAA 57.418 28.000 0.00 0.00 0.00 2.44
76 77 7.670916 TGCGTGAAATACAAAGAAAACAAAAG 58.329 30.769 0.00 0.00 0.00 2.27
77 78 7.542477 TGCGTGAAATACAAAGAAAACAAAAGA 59.458 29.630 0.00 0.00 0.00 2.52
78 79 8.376942 GCGTGAAATACAAAGAAAACAAAAGAA 58.623 29.630 0.00 0.00 0.00 2.52
85 86 7.905604 ACAAAGAAAACAAAAGAAAAGGAGG 57.094 32.000 0.00 0.00 0.00 4.30
86 87 7.450074 ACAAAGAAAACAAAAGAAAAGGAGGT 58.550 30.769 0.00 0.00 0.00 3.85
87 88 8.590204 ACAAAGAAAACAAAAGAAAAGGAGGTA 58.410 29.630 0.00 0.00 0.00 3.08
88 89 9.087424 CAAAGAAAACAAAAGAAAAGGAGGTAG 57.913 33.333 0.00 0.00 0.00 3.18
89 90 6.806751 AGAAAACAAAAGAAAAGGAGGTAGC 58.193 36.000 0.00 0.00 0.00 3.58
90 91 4.830826 AACAAAAGAAAAGGAGGTAGCG 57.169 40.909 0.00 0.00 0.00 4.26
91 92 4.081322 ACAAAAGAAAAGGAGGTAGCGA 57.919 40.909 0.00 0.00 0.00 4.93
92 93 4.652822 ACAAAAGAAAAGGAGGTAGCGAT 58.347 39.130 0.00 0.00 0.00 4.58
93 94 4.695928 ACAAAAGAAAAGGAGGTAGCGATC 59.304 41.667 0.00 0.00 0.00 3.69
94 95 4.553330 AAAGAAAAGGAGGTAGCGATCA 57.447 40.909 0.00 0.00 0.00 2.92
95 96 4.553330 AAGAAAAGGAGGTAGCGATCAA 57.447 40.909 0.00 0.00 0.00 2.57
96 97 4.130286 AGAAAAGGAGGTAGCGATCAAG 57.870 45.455 0.00 0.00 0.00 3.02
97 98 2.990066 AAAGGAGGTAGCGATCAAGG 57.010 50.000 0.00 0.00 0.00 3.61
98 99 2.160721 AAGGAGGTAGCGATCAAGGA 57.839 50.000 0.00 0.00 0.00 3.36
99 100 1.698506 AGGAGGTAGCGATCAAGGAG 58.301 55.000 0.00 0.00 0.00 3.69
100 101 1.215673 AGGAGGTAGCGATCAAGGAGA 59.784 52.381 0.00 0.00 0.00 3.71
101 102 2.032620 GGAGGTAGCGATCAAGGAGAA 58.967 52.381 0.00 0.00 0.00 2.87
102 103 2.035321 GGAGGTAGCGATCAAGGAGAAG 59.965 54.545 0.00 0.00 0.00 2.85
103 104 1.410882 AGGTAGCGATCAAGGAGAAGC 59.589 52.381 0.00 0.00 35.15 3.86
104 105 1.137086 GGTAGCGATCAAGGAGAAGCA 59.863 52.381 0.00 0.00 36.71 3.91
105 106 2.197577 GTAGCGATCAAGGAGAAGCAC 58.802 52.381 0.00 0.00 36.71 4.40
106 107 0.901124 AGCGATCAAGGAGAAGCACT 59.099 50.000 0.00 0.00 36.71 4.40
107 108 2.103373 AGCGATCAAGGAGAAGCACTA 58.897 47.619 0.00 0.00 36.71 2.74
108 109 2.100584 AGCGATCAAGGAGAAGCACTAG 59.899 50.000 0.00 0.00 36.71 2.57
109 110 2.801342 GCGATCAAGGAGAAGCACTAGG 60.801 54.545 0.00 0.00 35.08 3.02
110 111 2.801342 CGATCAAGGAGAAGCACTAGGC 60.801 54.545 0.00 0.00 45.30 3.93
111 112 0.905357 TCAAGGAGAAGCACTAGGCC 59.095 55.000 0.00 0.00 46.50 5.19
112 113 0.908198 CAAGGAGAAGCACTAGGCCT 59.092 55.000 11.78 11.78 46.50 5.19
113 114 0.908198 AAGGAGAAGCACTAGGCCTG 59.092 55.000 17.99 8.18 46.50 4.85
114 115 0.980231 AGGAGAAGCACTAGGCCTGG 60.980 60.000 17.99 16.79 46.50 4.45
115 116 1.153269 GAGAAGCACTAGGCCTGGC 60.153 63.158 17.99 16.59 46.50 4.85
146 147 3.260100 CTCTGGGTGGCCCTGGTT 61.260 66.667 0.00 0.00 45.70 3.67
147 148 2.780924 TCTGGGTGGCCCTGGTTT 60.781 61.111 0.00 0.00 45.70 3.27
148 149 1.464395 TCTGGGTGGCCCTGGTTTA 60.464 57.895 0.00 0.00 45.70 2.01
149 150 1.304134 CTGGGTGGCCCTGGTTTAC 60.304 63.158 0.00 0.00 45.70 2.01
150 151 1.776710 TGGGTGGCCCTGGTTTACT 60.777 57.895 0.00 0.00 45.70 2.24
151 152 1.001269 GGGTGGCCCTGGTTTACTC 60.001 63.158 0.00 0.00 41.34 2.59
152 153 1.765074 GGTGGCCCTGGTTTACTCA 59.235 57.895 0.00 0.00 0.00 3.41
153 154 0.331616 GGTGGCCCTGGTTTACTCAT 59.668 55.000 0.00 0.00 0.00 2.90
154 155 1.463674 GTGGCCCTGGTTTACTCATG 58.536 55.000 0.00 0.00 0.00 3.07
155 156 0.323360 TGGCCCTGGTTTACTCATGC 60.323 55.000 0.00 0.00 0.00 4.06
156 157 0.034089 GGCCCTGGTTTACTCATGCT 60.034 55.000 0.00 0.00 0.00 3.79
157 158 1.098050 GCCCTGGTTTACTCATGCTG 58.902 55.000 0.00 0.00 0.00 4.41
158 159 1.755179 CCCTGGTTTACTCATGCTGG 58.245 55.000 0.00 0.00 0.00 4.85
159 160 1.098050 CCTGGTTTACTCATGCTGGC 58.902 55.000 0.00 0.00 0.00 4.85
160 161 1.340405 CCTGGTTTACTCATGCTGGCT 60.340 52.381 0.00 0.00 0.00 4.75
161 162 1.741706 CTGGTTTACTCATGCTGGCTG 59.258 52.381 0.00 0.00 0.00 4.85
162 163 1.350684 TGGTTTACTCATGCTGGCTGA 59.649 47.619 0.00 0.00 0.00 4.26
163 164 2.025981 TGGTTTACTCATGCTGGCTGAT 60.026 45.455 0.00 0.00 0.00 2.90
164 165 3.019564 GGTTTACTCATGCTGGCTGATT 58.980 45.455 0.00 0.00 0.00 2.57
165 166 3.065925 GGTTTACTCATGCTGGCTGATTC 59.934 47.826 0.00 0.00 0.00 2.52
166 167 3.920231 TTACTCATGCTGGCTGATTCT 57.080 42.857 0.00 0.00 0.00 2.40
167 168 2.328819 ACTCATGCTGGCTGATTCTC 57.671 50.000 0.00 0.00 0.00 2.87
168 169 1.558294 ACTCATGCTGGCTGATTCTCA 59.442 47.619 0.00 0.00 0.00 3.27
169 170 2.026542 ACTCATGCTGGCTGATTCTCAA 60.027 45.455 0.00 0.00 0.00 3.02
170 171 3.014623 CTCATGCTGGCTGATTCTCAAA 58.985 45.455 0.00 0.00 0.00 2.69
171 172 3.423749 TCATGCTGGCTGATTCTCAAAA 58.576 40.909 0.00 0.00 0.00 2.44
172 173 3.827876 TCATGCTGGCTGATTCTCAAAAA 59.172 39.130 0.00 0.00 0.00 1.94
194 195 3.575965 AAAAATCACGCTGGGATTGAC 57.424 42.857 6.77 0.00 35.28 3.18
195 196 2.198827 AAATCACGCTGGGATTGACA 57.801 45.000 6.77 0.00 35.28 3.58
196 197 1.742761 AATCACGCTGGGATTGACAG 58.257 50.000 5.43 0.00 38.95 3.51
197 198 0.904649 ATCACGCTGGGATTGACAGA 59.095 50.000 0.00 0.00 38.20 3.41
198 199 0.037326 TCACGCTGGGATTGACAGAC 60.037 55.000 0.00 0.00 38.20 3.51
199 200 0.320683 CACGCTGGGATTGACAGACA 60.321 55.000 0.00 0.00 38.20 3.41
200 201 0.396435 ACGCTGGGATTGACAGACAA 59.604 50.000 0.00 0.00 42.95 3.18
201 202 1.202758 ACGCTGGGATTGACAGACAAA 60.203 47.619 0.00 0.00 42.03 2.83
202 203 1.879380 CGCTGGGATTGACAGACAAAA 59.121 47.619 0.00 0.00 42.03 2.44
203 204 2.350772 CGCTGGGATTGACAGACAAAAC 60.351 50.000 0.00 0.00 42.03 2.43
204 205 2.622942 GCTGGGATTGACAGACAAAACA 59.377 45.455 0.00 0.00 42.03 2.83
205 206 3.068024 GCTGGGATTGACAGACAAAACAA 59.932 43.478 0.00 0.00 42.03 2.83
206 207 4.610945 CTGGGATTGACAGACAAAACAAC 58.389 43.478 0.00 0.00 42.03 3.32
207 208 4.019858 TGGGATTGACAGACAAAACAACA 58.980 39.130 0.00 0.00 42.03 3.33
208 209 4.464244 TGGGATTGACAGACAAAACAACAA 59.536 37.500 0.00 0.00 42.03 2.83
209 210 4.803613 GGGATTGACAGACAAAACAACAAC 59.196 41.667 0.00 0.00 42.03 3.32
210 211 5.406649 GGATTGACAGACAAAACAACAACA 58.593 37.500 0.00 0.00 42.03 3.33
211 212 5.866633 GGATTGACAGACAAAACAACAACAA 59.133 36.000 0.00 0.00 42.03 2.83
212 213 6.367422 GGATTGACAGACAAAACAACAACAAA 59.633 34.615 0.00 0.00 42.03 2.83
213 214 6.517914 TTGACAGACAAAACAACAACAAAC 57.482 33.333 0.00 0.00 35.39 2.93
214 215 5.592054 TGACAGACAAAACAACAACAAACA 58.408 33.333 0.00 0.00 0.00 2.83
215 216 6.042777 TGACAGACAAAACAACAACAAACAA 58.957 32.000 0.00 0.00 0.00 2.83
216 217 6.535150 TGACAGACAAAACAACAACAAACAAA 59.465 30.769 0.00 0.00 0.00 2.83
217 218 6.942891 ACAGACAAAACAACAACAAACAAAG 58.057 32.000 0.00 0.00 0.00 2.77
218 219 6.758886 ACAGACAAAACAACAACAAACAAAGA 59.241 30.769 0.00 0.00 0.00 2.52
219 220 7.278868 ACAGACAAAACAACAACAAACAAAGAA 59.721 29.630 0.00 0.00 0.00 2.52
220 221 8.119226 CAGACAAAACAACAACAAACAAAGAAA 58.881 29.630 0.00 0.00 0.00 2.52
221 222 8.669243 AGACAAAACAACAACAAACAAAGAAAA 58.331 25.926 0.00 0.00 0.00 2.29
222 223 8.833976 ACAAAACAACAACAAACAAAGAAAAG 57.166 26.923 0.00 0.00 0.00 2.27
223 224 7.912773 ACAAAACAACAACAAACAAAGAAAAGG 59.087 29.630 0.00 0.00 0.00 3.11
224 225 5.605564 ACAACAACAAACAAAGAAAAGGC 57.394 34.783 0.00 0.00 0.00 4.35
225 226 5.059833 ACAACAACAAACAAAGAAAAGGCA 58.940 33.333 0.00 0.00 0.00 4.75
226 227 5.529060 ACAACAACAAACAAAGAAAAGGCAA 59.471 32.000 0.00 0.00 0.00 4.52
227 228 5.605564 ACAACAAACAAAGAAAAGGCAAC 57.394 34.783 0.00 0.00 0.00 4.17
228 229 5.059833 ACAACAAACAAAGAAAAGGCAACA 58.940 33.333 0.00 0.00 41.41 3.33
229 230 5.529060 ACAACAAACAAAGAAAAGGCAACAA 59.471 32.000 0.00 0.00 41.41 2.83
230 231 6.038714 ACAACAAACAAAGAAAAGGCAACAAA 59.961 30.769 0.00 0.00 41.41 2.83
231 232 5.996219 ACAAACAAAGAAAAGGCAACAAAC 58.004 33.333 0.00 0.00 41.41 2.93
232 233 5.529060 ACAAACAAAGAAAAGGCAACAAACA 59.471 32.000 0.00 0.00 41.41 2.83
233 234 6.038714 ACAAACAAAGAAAAGGCAACAAACAA 59.961 30.769 0.00 0.00 41.41 2.83
234 235 5.861222 ACAAAGAAAAGGCAACAAACAAG 57.139 34.783 0.00 0.00 41.41 3.16
235 236 5.304778 ACAAAGAAAAGGCAACAAACAAGT 58.695 33.333 0.00 0.00 41.41 3.16
236 237 5.179182 ACAAAGAAAAGGCAACAAACAAGTG 59.821 36.000 0.00 0.00 41.41 3.16
237 238 3.261580 AGAAAAGGCAACAAACAAGTGC 58.738 40.909 0.00 0.00 41.41 4.40
238 239 3.055891 AGAAAAGGCAACAAACAAGTGCT 60.056 39.130 0.00 0.00 41.41 4.40
239 240 4.159506 AGAAAAGGCAACAAACAAGTGCTA 59.840 37.500 0.00 0.00 41.41 3.49
240 241 4.464069 AAAGGCAACAAACAAGTGCTAA 57.536 36.364 0.00 0.00 41.41 3.09
241 242 4.464069 AAGGCAACAAACAAGTGCTAAA 57.536 36.364 0.00 0.00 41.41 1.85
242 243 4.464069 AGGCAACAAACAAGTGCTAAAA 57.536 36.364 0.00 0.00 41.41 1.52
243 244 4.826556 AGGCAACAAACAAGTGCTAAAAA 58.173 34.783 0.00 0.00 41.41 1.94
297 298 5.916661 TCTAAATGAGTCCTAGACACACC 57.083 43.478 0.00 0.00 36.15 4.16
298 299 3.983044 AAATGAGTCCTAGACACACCC 57.017 47.619 0.00 0.00 36.15 4.61
322 323 6.281405 CAATTAGTATTAGTTGACTCCCGCT 58.719 40.000 0.00 0.00 30.42 5.52
324 325 4.124851 AGTATTAGTTGACTCCCGCTTG 57.875 45.455 0.00 0.00 0.00 4.01
325 326 1.739067 ATTAGTTGACTCCCGCTTGC 58.261 50.000 0.00 0.00 0.00 4.01
326 327 0.321298 TTAGTTGACTCCCGCTTGCC 60.321 55.000 0.00 0.00 0.00 4.52
327 328 2.501223 TAGTTGACTCCCGCTTGCCG 62.501 60.000 0.00 0.00 0.00 5.69
434 458 5.364778 TCAACAGATTTGAAGGAGACGAAA 58.635 37.500 0.00 0.00 0.00 3.46
633 687 4.459337 TCACATATCAGTCGAGTCAACTGT 59.541 41.667 10.95 1.99 43.68 3.55
669 724 7.668052 TCAGGCTAATGTTTGTTACCACTATTT 59.332 33.333 0.00 0.00 0.00 1.40
732 790 1.270826 GCCACTGGGAAGAAAAAGAGC 59.729 52.381 0.00 0.00 35.59 4.09
736 794 3.571401 CACTGGGAAGAAAAAGAGCACAT 59.429 43.478 0.00 0.00 0.00 3.21
874 948 3.166489 AGGCTAGGTCTTCGAATTTCG 57.834 47.619 12.54 12.54 42.10 3.46
936 1025 0.036388 ACACGCATTCTCCACCGATT 60.036 50.000 0.00 0.00 0.00 3.34
1241 1373 2.230508 TCGTCGAGGTACTGCAAGAAAT 59.769 45.455 4.85 0.00 41.55 2.17
1285 1439 2.695314 GCCGATTAGTCAGGCTTGG 58.305 57.895 11.81 0.00 46.83 3.61
1293 1447 6.127730 CCGATTAGTCAGGCTTGGTTAATTTT 60.128 38.462 0.00 0.00 0.00 1.82
1310 1464 9.092876 GGTTAATTTTGTTGAGTTGTTGATGAA 57.907 29.630 0.00 0.00 0.00 2.57
1334 1488 1.412710 GGATGTGATGCTTCCGTCCTA 59.587 52.381 15.92 0.00 32.69 2.94
1343 1498 0.679002 CTTCCGTCCTACTCGACCCA 60.679 60.000 0.00 0.00 0.00 4.51
1400 1555 3.952628 GAACGACCCTTCCCTGCGG 62.953 68.421 0.00 0.00 0.00 5.69
1424 1579 0.179137 TCGAGCTGATTGACGCGATT 60.179 50.000 15.93 0.00 0.00 3.34
1526 1690 2.360852 CTCAGCAGGGGCAAGGTG 60.361 66.667 0.00 0.00 44.61 4.00
1626 1790 2.204461 TCCAACCTCGGCGAACTCA 61.204 57.895 12.13 0.00 0.00 3.41
1682 1846 1.381872 CCTGGTCATCCTCTCCGGT 60.382 63.158 0.00 0.00 34.23 5.28
2113 2295 1.910216 TACAGCTGCGCACGTACGTA 61.910 55.000 22.34 4.17 34.88 3.57
2114 2296 2.503375 AGCTGCGCACGTACGTAC 60.503 61.111 22.34 15.19 34.88 3.67
2281 2482 1.405821 CCAATTCTCTCCGAGCTACGT 59.594 52.381 0.00 0.00 40.78 3.57
2381 2582 6.380095 AAAGTGATGCATGCAACAATTTTT 57.620 29.167 35.50 27.63 41.61 1.94
2413 2616 5.868454 TGTACACTCATAGGCATGCATTAT 58.132 37.500 21.36 13.56 31.73 1.28
2464 2667 4.948847 AGATGAGACGCATACAAGCAATA 58.051 39.130 0.00 0.00 37.34 1.90
2466 2669 4.385358 TGAGACGCATACAAGCAATAGA 57.615 40.909 0.00 0.00 0.00 1.98
2469 2672 5.641636 TGAGACGCATACAAGCAATAGAAAA 59.358 36.000 0.00 0.00 0.00 2.29
2475 2678 6.801377 CGCATACAAGCAATAGAAAAACAAGA 59.199 34.615 0.00 0.00 0.00 3.02
2478 2681 9.897744 CATACAAGCAATAGAAAAACAAGAAGA 57.102 29.630 0.00 0.00 0.00 2.87
2511 2715 2.693591 TGTACTGCTGCATACTACCCTC 59.306 50.000 1.31 0.00 0.00 4.30
2514 2718 1.043116 TGCTGCATACTACCCTCGCT 61.043 55.000 0.00 0.00 0.00 4.93
2526 2730 1.021390 CCCTCGCTGCAACTACCAAG 61.021 60.000 0.00 0.00 0.00 3.61
2539 2743 5.527214 GCAACTACCAAGCTTTCCAATTTTT 59.473 36.000 0.00 0.00 0.00 1.94
2542 2746 4.664150 ACCAAGCTTTCCAATTTTTCGA 57.336 36.364 0.00 0.00 0.00 3.71
2543 2747 5.213891 ACCAAGCTTTCCAATTTTTCGAT 57.786 34.783 0.00 0.00 0.00 3.59
2608 2848 3.008517 TTGCAGCCCCATCTCCGA 61.009 61.111 0.00 0.00 0.00 4.55
2623 2863 0.253894 TCCGACGAGGTACTGGATCA 59.746 55.000 0.00 0.00 41.55 2.92
2630 2870 0.033011 AGGTACTGGATCAGCCTCGT 60.033 55.000 0.00 0.00 37.18 4.18
2649 2889 2.742372 GTGGCCGACGCTCATTGT 60.742 61.111 0.00 0.00 34.44 2.71
2652 2892 2.202349 GCCGACGCTCATTGTTGC 60.202 61.111 0.00 0.00 0.00 4.17
2653 2893 2.480555 CCGACGCTCATTGTTGCC 59.519 61.111 0.00 0.00 0.00 4.52
2661 2901 1.522668 CTCATTGTTGCCGTTCCTCA 58.477 50.000 0.00 0.00 0.00 3.86
2679 2919 0.810031 CATGTCGTCCCCGCCTTTAG 60.810 60.000 0.00 0.00 0.00 1.85
2680 2920 0.974010 ATGTCGTCCCCGCCTTTAGA 60.974 55.000 0.00 0.00 0.00 2.10
2681 2921 0.974010 TGTCGTCCCCGCCTTTAGAT 60.974 55.000 0.00 0.00 0.00 1.98
2682 2922 0.249363 GTCGTCCCCGCCTTTAGATC 60.249 60.000 0.00 0.00 0.00 2.75
2683 2923 0.685131 TCGTCCCCGCCTTTAGATCA 60.685 55.000 0.00 0.00 0.00 2.92
2684 2924 0.177141 CGTCCCCGCCTTTAGATCAA 59.823 55.000 0.00 0.00 0.00 2.57
2685 2925 1.406341 CGTCCCCGCCTTTAGATCAAA 60.406 52.381 0.00 0.00 0.00 2.69
2686 2926 2.014857 GTCCCCGCCTTTAGATCAAAC 58.985 52.381 0.00 0.00 0.00 2.93
2687 2927 1.064979 TCCCCGCCTTTAGATCAAACC 60.065 52.381 0.00 0.00 0.00 3.27
2688 2928 1.389555 CCCGCCTTTAGATCAAACCC 58.610 55.000 0.00 0.00 0.00 4.11
2689 2929 1.014352 CCGCCTTTAGATCAAACCCG 58.986 55.000 0.00 0.00 0.00 5.28
2690 2930 0.377203 CGCCTTTAGATCAAACCCGC 59.623 55.000 0.00 0.00 0.00 6.13
2691 2931 0.738975 GCCTTTAGATCAAACCCGCC 59.261 55.000 0.00 0.00 0.00 6.13
2692 2932 1.682087 GCCTTTAGATCAAACCCGCCT 60.682 52.381 0.00 0.00 0.00 5.52
2693 2933 2.723273 CCTTTAGATCAAACCCGCCTT 58.277 47.619 0.00 0.00 0.00 4.35
2694 2934 3.089284 CCTTTAGATCAAACCCGCCTTT 58.911 45.455 0.00 0.00 0.00 3.11
2695 2935 4.266714 CCTTTAGATCAAACCCGCCTTTA 58.733 43.478 0.00 0.00 0.00 1.85
2702 2942 1.611491 CAAACCCGCCTTTAGCTTTGA 59.389 47.619 0.00 0.00 36.66 2.69
2736 2976 4.156182 CCGACGCCAGAAAAGAAAATTAC 58.844 43.478 0.00 0.00 0.00 1.89
2748 2988 7.935210 AGAAAAGAAAATTACGGACCTGAGTTA 59.065 33.333 0.00 0.00 0.00 2.24
2759 2999 4.585879 GGACCTGAGTTAGCAAAACCATA 58.414 43.478 0.00 0.00 0.00 2.74
2825 3065 1.803289 CAAGGCGGCTAAGGAAAGC 59.197 57.895 13.71 0.00 41.99 3.51
2845 3085 3.112580 GCCTTCTTCTCTTCGATCTTCG 58.887 50.000 0.00 0.00 42.10 3.79
2931 3171 1.568504 TTCCTGGTGCCTCGACTTAT 58.431 50.000 0.00 0.00 0.00 1.73
2941 3181 1.134560 CCTCGACTTATATAGGCCGGC 59.865 57.143 21.18 21.18 0.00 6.13
2942 3182 2.093106 CTCGACTTATATAGGCCGGCT 58.907 52.381 28.56 15.07 0.00 5.52
2943 3183 2.089980 TCGACTTATATAGGCCGGCTC 58.910 52.381 28.56 16.85 0.00 4.70
2944 3184 1.134560 CGACTTATATAGGCCGGCTCC 59.865 57.143 28.56 11.04 0.00 4.70
2945 3185 1.134560 GACTTATATAGGCCGGCTCCG 59.865 57.143 28.56 8.75 39.44 4.63
2961 3201 4.944372 CGGTATGGGAGCGGCGAC 62.944 72.222 12.98 3.05 45.37 5.19
2962 3202 3.845259 GGTATGGGAGCGGCGACA 61.845 66.667 12.98 3.44 0.00 4.35
2963 3203 2.279517 GTATGGGAGCGGCGACAG 60.280 66.667 12.98 0.00 0.00 3.51
2964 3204 4.221422 TATGGGAGCGGCGACAGC 62.221 66.667 12.98 0.00 44.18 4.40
2985 3225 2.177531 GCGTCTGCGGTCGTTCTA 59.822 61.111 13.56 0.00 38.78 2.10
2986 3226 1.868251 GCGTCTGCGGTCGTTCTAG 60.868 63.158 13.56 0.00 38.78 2.43
2987 3227 1.868251 CGTCTGCGGTCGTTCTAGC 60.868 63.158 3.88 0.00 0.00 3.42
2988 3228 1.868251 GTCTGCGGTCGTTCTAGCG 60.868 63.158 0.00 0.00 42.98 4.26
2989 3229 2.579787 CTGCGGTCGTTCTAGCGG 60.580 66.667 0.00 0.00 40.57 5.52
2990 3230 4.789075 TGCGGTCGTTCTAGCGGC 62.789 66.667 0.00 0.00 40.57 6.53
2994 3234 4.789075 GTCGTTCTAGCGGCGGCA 62.789 66.667 19.21 3.77 43.41 5.69
2995 3235 4.058732 TCGTTCTAGCGGCGGCAA 62.059 61.111 19.21 0.97 43.41 4.52
2996 3236 2.890474 CGTTCTAGCGGCGGCAAT 60.890 61.111 19.21 0.80 43.41 3.56
2997 3237 2.709475 GTTCTAGCGGCGGCAATG 59.291 61.111 19.21 7.81 43.41 2.82
2998 3238 2.513666 TTCTAGCGGCGGCAATGG 60.514 61.111 19.21 0.64 43.41 3.16
2999 3239 3.323758 TTCTAGCGGCGGCAATGGT 62.324 57.895 19.21 0.42 43.41 3.55
3000 3240 3.272334 CTAGCGGCGGCAATGGTC 61.272 66.667 19.21 0.00 43.41 4.02
3004 3244 4.160635 CGGCGGCAATGGTCGTTC 62.161 66.667 10.53 0.00 45.79 3.95
3005 3245 4.160635 GGCGGCAATGGTCGTTCG 62.161 66.667 3.07 0.00 45.79 3.95
3006 3246 4.160635 GCGGCAATGGTCGTTCGG 62.161 66.667 0.00 0.00 45.79 4.30
3007 3247 2.740826 CGGCAATGGTCGTTCGGT 60.741 61.111 0.00 0.00 37.35 4.69
3008 3248 2.322081 CGGCAATGGTCGTTCGGTT 61.322 57.895 0.00 0.00 37.35 4.44
3009 3249 1.209127 GGCAATGGTCGTTCGGTTG 59.791 57.895 0.00 0.00 0.00 3.77
3010 3250 1.512156 GGCAATGGTCGTTCGGTTGT 61.512 55.000 0.00 0.00 0.00 3.32
3011 3251 0.309612 GCAATGGTCGTTCGGTTGTT 59.690 50.000 0.00 0.00 0.00 2.83
3012 3252 1.662026 GCAATGGTCGTTCGGTTGTTC 60.662 52.381 0.00 0.00 0.00 3.18
3013 3253 1.600013 CAATGGTCGTTCGGTTGTTCA 59.400 47.619 0.00 0.00 0.00 3.18
3014 3254 2.178912 ATGGTCGTTCGGTTGTTCAT 57.821 45.000 0.00 0.00 0.00 2.57
3015 3255 1.222300 TGGTCGTTCGGTTGTTCATG 58.778 50.000 0.00 0.00 0.00 3.07
3016 3256 0.515564 GGTCGTTCGGTTGTTCATGG 59.484 55.000 0.00 0.00 0.00 3.66
3017 3257 1.504359 GTCGTTCGGTTGTTCATGGA 58.496 50.000 0.00 0.00 0.00 3.41
3018 3258 1.193874 GTCGTTCGGTTGTTCATGGAC 59.806 52.381 0.00 0.00 0.00 4.02
3019 3259 0.162933 CGTTCGGTTGTTCATGGACG 59.837 55.000 0.00 0.00 0.00 4.79
3020 3260 1.223187 GTTCGGTTGTTCATGGACGT 58.777 50.000 0.00 0.00 0.00 4.34
3021 3261 1.193874 GTTCGGTTGTTCATGGACGTC 59.806 52.381 7.13 7.13 0.00 4.34
3022 3262 0.665068 TCGGTTGTTCATGGACGTCG 60.665 55.000 9.92 3.61 0.00 5.12
3023 3263 0.665068 CGGTTGTTCATGGACGTCGA 60.665 55.000 9.92 5.99 0.00 4.20
3024 3264 1.722011 GGTTGTTCATGGACGTCGAT 58.278 50.000 9.92 8.58 0.00 3.59
3025 3265 1.393539 GGTTGTTCATGGACGTCGATG 59.606 52.381 28.55 28.55 34.02 3.84
3026 3266 2.066262 GTTGTTCATGGACGTCGATGT 58.934 47.619 31.32 10.75 34.32 3.06
3027 3267 3.247442 GTTGTTCATGGACGTCGATGTA 58.753 45.455 31.32 23.37 34.32 2.29
3028 3268 3.579335 TGTTCATGGACGTCGATGTAA 57.421 42.857 31.32 22.94 34.32 2.41
3029 3269 4.118093 TGTTCATGGACGTCGATGTAAT 57.882 40.909 31.32 4.94 34.32 1.89
3030 3270 4.500127 TGTTCATGGACGTCGATGTAATT 58.500 39.130 31.32 2.05 34.32 1.40
3031 3271 4.932799 TGTTCATGGACGTCGATGTAATTT 59.067 37.500 31.32 1.34 34.32 1.82
3032 3272 5.410132 TGTTCATGGACGTCGATGTAATTTT 59.590 36.000 31.32 0.62 34.32 1.82
3033 3273 6.072948 TGTTCATGGACGTCGATGTAATTTTT 60.073 34.615 31.32 0.00 34.32 1.94
3034 3274 7.117956 TGTTCATGGACGTCGATGTAATTTTTA 59.882 33.333 31.32 13.50 34.32 1.52
3035 3275 7.780008 TCATGGACGTCGATGTAATTTTTAT 57.220 32.000 31.32 0.00 34.32 1.40
3036 3276 8.203937 TCATGGACGTCGATGTAATTTTTATT 57.796 30.769 31.32 0.00 34.32 1.40
3037 3277 9.315525 TCATGGACGTCGATGTAATTTTTATTA 57.684 29.630 31.32 11.83 34.32 0.98
3040 3280 9.100554 TGGACGTCGATGTAATTTTTATTATGT 57.899 29.630 10.95 0.00 0.00 2.29
3041 3281 9.925268 GGACGTCGATGTAATTTTTATTATGTT 57.075 29.630 10.95 0.00 0.00 2.71
3062 3302 7.079182 TGTTTGAAGTGTTTTGTACTACTGG 57.921 36.000 0.00 0.00 0.00 4.00
3063 3303 6.655848 TGTTTGAAGTGTTTTGTACTACTGGT 59.344 34.615 0.00 0.00 0.00 4.00
3064 3304 7.823310 TGTTTGAAGTGTTTTGTACTACTGGTA 59.177 33.333 0.00 0.00 0.00 3.25
3065 3305 8.667463 GTTTGAAGTGTTTTGTACTACTGGTAA 58.333 33.333 0.00 0.00 31.56 2.85
3066 3306 8.428186 TTGAAGTGTTTTGTACTACTGGTAAG 57.572 34.615 0.00 0.00 31.56 2.34
3067 3307 7.558604 TGAAGTGTTTTGTACTACTGGTAAGT 58.441 34.615 0.00 0.00 40.67 2.24
3068 3308 7.707893 TGAAGTGTTTTGTACTACTGGTAAGTC 59.292 37.037 0.00 0.00 37.88 3.01
3069 3309 7.357429 AGTGTTTTGTACTACTGGTAAGTCT 57.643 36.000 0.00 0.00 37.88 3.24
3070 3310 7.789026 AGTGTTTTGTACTACTGGTAAGTCTT 58.211 34.615 0.00 0.00 37.88 3.01
3071 3311 7.924947 AGTGTTTTGTACTACTGGTAAGTCTTC 59.075 37.037 0.00 0.00 37.88 2.87
3072 3312 7.707893 GTGTTTTGTACTACTGGTAAGTCTTCA 59.292 37.037 0.00 0.00 37.88 3.02
3073 3313 8.426489 TGTTTTGTACTACTGGTAAGTCTTCAT 58.574 33.333 0.00 0.00 37.88 2.57
3074 3314 9.918630 GTTTTGTACTACTGGTAAGTCTTCATA 57.081 33.333 0.00 0.00 37.88 2.15
3084 3324 9.647918 ACTGGTAAGTCTTCATAATAGATCTGA 57.352 33.333 5.18 0.00 26.77 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.036734 TGCTCAAAAGAAAAGGCAGTACTG 59.963 41.667 18.93 18.93 0.00 2.74
15 16 4.207165 TGCTCAAAAGAAAAGGCAGTACT 58.793 39.130 0.00 0.00 0.00 2.73
16 17 4.568152 TGCTCAAAAGAAAAGGCAGTAC 57.432 40.909 0.00 0.00 0.00 2.73
17 18 5.590530 TTTGCTCAAAAGAAAAGGCAGTA 57.409 34.783 0.00 0.00 0.00 2.74
18 19 4.470334 TTTGCTCAAAAGAAAAGGCAGT 57.530 36.364 0.00 0.00 0.00 4.40
19 20 5.799681 TTTTTGCTCAAAAGAAAAGGCAG 57.200 34.783 7.69 0.00 40.83 4.85
29 30 6.416455 CGCAATAGTACACTTTTTGCTCAAAA 59.584 34.615 19.12 3.86 39.58 2.44
30 31 5.912396 CGCAATAGTACACTTTTTGCTCAAA 59.088 36.000 19.12 0.00 39.58 2.69
31 32 5.008217 ACGCAATAGTACACTTTTTGCTCAA 59.992 36.000 19.12 0.00 39.58 3.02
32 33 4.513692 ACGCAATAGTACACTTTTTGCTCA 59.486 37.500 19.12 0.00 39.58 4.26
33 34 4.846137 CACGCAATAGTACACTTTTTGCTC 59.154 41.667 19.12 2.61 39.58 4.26
34 35 4.513692 TCACGCAATAGTACACTTTTTGCT 59.486 37.500 19.12 9.74 39.58 3.91
35 36 4.778904 TCACGCAATAGTACACTTTTTGC 58.221 39.130 14.79 14.79 38.96 3.68
36 37 7.851822 ATTTCACGCAATAGTACACTTTTTG 57.148 32.000 0.00 0.00 0.00 2.44
37 38 8.561212 TGTATTTCACGCAATAGTACACTTTTT 58.439 29.630 0.00 0.00 0.00 1.94
38 39 8.090250 TGTATTTCACGCAATAGTACACTTTT 57.910 30.769 0.00 0.00 0.00 2.27
39 40 7.661127 TGTATTTCACGCAATAGTACACTTT 57.339 32.000 0.00 0.00 0.00 2.66
40 41 7.661127 TTGTATTTCACGCAATAGTACACTT 57.339 32.000 0.00 0.00 0.00 3.16
41 42 7.601130 TCTTTGTATTTCACGCAATAGTACACT 59.399 33.333 0.00 0.00 0.00 3.55
42 43 7.735500 TCTTTGTATTTCACGCAATAGTACAC 58.264 34.615 0.00 0.00 0.00 2.90
43 44 7.892778 TCTTTGTATTTCACGCAATAGTACA 57.107 32.000 0.00 0.00 0.00 2.90
44 45 9.601971 TTTTCTTTGTATTTCACGCAATAGTAC 57.398 29.630 0.00 0.00 0.00 2.73
45 46 9.601971 GTTTTCTTTGTATTTCACGCAATAGTA 57.398 29.630 0.00 0.00 0.00 1.82
46 47 8.132362 TGTTTTCTTTGTATTTCACGCAATAGT 58.868 29.630 0.00 0.00 0.00 2.12
47 48 8.500837 TGTTTTCTTTGTATTTCACGCAATAG 57.499 30.769 0.00 0.00 0.00 1.73
48 49 8.858003 TTGTTTTCTTTGTATTTCACGCAATA 57.142 26.923 0.00 0.00 0.00 1.90
49 50 7.763172 TTGTTTTCTTTGTATTTCACGCAAT 57.237 28.000 0.00 0.00 0.00 3.56
50 51 7.582435 TTTGTTTTCTTTGTATTTCACGCAA 57.418 28.000 0.00 0.00 0.00 4.85
51 52 7.542477 TCTTTTGTTTTCTTTGTATTTCACGCA 59.458 29.630 0.00 0.00 0.00 5.24
52 53 7.890763 TCTTTTGTTTTCTTTGTATTTCACGC 58.109 30.769 0.00 0.00 0.00 5.34
59 60 9.599866 CCTCCTTTTCTTTTGTTTTCTTTGTAT 57.400 29.630 0.00 0.00 0.00 2.29
60 61 8.590204 ACCTCCTTTTCTTTTGTTTTCTTTGTA 58.410 29.630 0.00 0.00 0.00 2.41
61 62 7.450074 ACCTCCTTTTCTTTTGTTTTCTTTGT 58.550 30.769 0.00 0.00 0.00 2.83
62 63 7.905604 ACCTCCTTTTCTTTTGTTTTCTTTG 57.094 32.000 0.00 0.00 0.00 2.77
63 64 7.764443 GCTACCTCCTTTTCTTTTGTTTTCTTT 59.236 33.333 0.00 0.00 0.00 2.52
64 65 7.265673 GCTACCTCCTTTTCTTTTGTTTTCTT 58.734 34.615 0.00 0.00 0.00 2.52
65 66 6.459710 CGCTACCTCCTTTTCTTTTGTTTTCT 60.460 38.462 0.00 0.00 0.00 2.52
66 67 5.685954 CGCTACCTCCTTTTCTTTTGTTTTC 59.314 40.000 0.00 0.00 0.00 2.29
67 68 5.358725 TCGCTACCTCCTTTTCTTTTGTTTT 59.641 36.000 0.00 0.00 0.00 2.43
68 69 4.885325 TCGCTACCTCCTTTTCTTTTGTTT 59.115 37.500 0.00 0.00 0.00 2.83
69 70 4.457466 TCGCTACCTCCTTTTCTTTTGTT 58.543 39.130 0.00 0.00 0.00 2.83
70 71 4.081322 TCGCTACCTCCTTTTCTTTTGT 57.919 40.909 0.00 0.00 0.00 2.83
71 72 4.695455 TGATCGCTACCTCCTTTTCTTTTG 59.305 41.667 0.00 0.00 0.00 2.44
72 73 4.906618 TGATCGCTACCTCCTTTTCTTTT 58.093 39.130 0.00 0.00 0.00 2.27
73 74 4.553330 TGATCGCTACCTCCTTTTCTTT 57.447 40.909 0.00 0.00 0.00 2.52
74 75 4.508662 CTTGATCGCTACCTCCTTTTCTT 58.491 43.478 0.00 0.00 0.00 2.52
75 76 3.118592 CCTTGATCGCTACCTCCTTTTCT 60.119 47.826 0.00 0.00 0.00 2.52
76 77 3.118738 TCCTTGATCGCTACCTCCTTTTC 60.119 47.826 0.00 0.00 0.00 2.29
77 78 2.838202 TCCTTGATCGCTACCTCCTTTT 59.162 45.455 0.00 0.00 0.00 2.27
78 79 2.432510 CTCCTTGATCGCTACCTCCTTT 59.567 50.000 0.00 0.00 0.00 3.11
79 80 2.035632 CTCCTTGATCGCTACCTCCTT 58.964 52.381 0.00 0.00 0.00 3.36
80 81 1.215673 TCTCCTTGATCGCTACCTCCT 59.784 52.381 0.00 0.00 0.00 3.69
81 82 1.693627 TCTCCTTGATCGCTACCTCC 58.306 55.000 0.00 0.00 0.00 4.30
82 83 2.544903 GCTTCTCCTTGATCGCTACCTC 60.545 54.545 0.00 0.00 0.00 3.85
83 84 1.410882 GCTTCTCCTTGATCGCTACCT 59.589 52.381 0.00 0.00 0.00 3.08
84 85 1.137086 TGCTTCTCCTTGATCGCTACC 59.863 52.381 0.00 0.00 0.00 3.18
85 86 2.159170 AGTGCTTCTCCTTGATCGCTAC 60.159 50.000 0.00 0.00 0.00 3.58
86 87 2.103373 AGTGCTTCTCCTTGATCGCTA 58.897 47.619 0.00 0.00 0.00 4.26
87 88 0.901124 AGTGCTTCTCCTTGATCGCT 59.099 50.000 0.00 0.00 0.00 4.93
88 89 2.468831 CTAGTGCTTCTCCTTGATCGC 58.531 52.381 0.00 0.00 0.00 4.58
89 90 2.801342 GCCTAGTGCTTCTCCTTGATCG 60.801 54.545 0.00 0.00 36.87 3.69
90 91 2.484594 GGCCTAGTGCTTCTCCTTGATC 60.485 54.545 0.00 0.00 40.92 2.92
91 92 1.488393 GGCCTAGTGCTTCTCCTTGAT 59.512 52.381 0.00 0.00 40.92 2.57
92 93 0.905357 GGCCTAGTGCTTCTCCTTGA 59.095 55.000 0.00 0.00 40.92 3.02
93 94 0.908198 AGGCCTAGTGCTTCTCCTTG 59.092 55.000 1.29 0.00 40.92 3.61
94 95 0.908198 CAGGCCTAGTGCTTCTCCTT 59.092 55.000 3.98 0.00 40.92 3.36
95 96 0.980231 CCAGGCCTAGTGCTTCTCCT 60.980 60.000 3.98 0.00 40.92 3.69
96 97 1.524482 CCAGGCCTAGTGCTTCTCC 59.476 63.158 3.98 0.00 40.92 3.71
97 98 1.153269 GCCAGGCCTAGTGCTTCTC 60.153 63.158 3.98 0.00 40.92 2.87
98 99 2.674220 GGCCAGGCCTAGTGCTTCT 61.674 63.158 24.99 0.00 46.69 2.85
99 100 2.124529 GGCCAGGCCTAGTGCTTC 60.125 66.667 24.99 0.00 46.69 3.86
133 134 1.001269 GAGTAAACCAGGGCCACCC 60.001 63.158 6.18 0.00 45.90 4.61
134 135 0.331616 ATGAGTAAACCAGGGCCACC 59.668 55.000 6.18 0.00 0.00 4.61
135 136 1.463674 CATGAGTAAACCAGGGCCAC 58.536 55.000 6.18 0.00 0.00 5.01
136 137 0.323360 GCATGAGTAAACCAGGGCCA 60.323 55.000 6.18 0.00 0.00 5.36
137 138 0.034089 AGCATGAGTAAACCAGGGCC 60.034 55.000 0.00 0.00 0.00 5.80
138 139 1.098050 CAGCATGAGTAAACCAGGGC 58.902 55.000 0.00 0.00 39.69 5.19
139 140 1.755179 CCAGCATGAGTAAACCAGGG 58.245 55.000 0.00 0.00 39.69 4.45
140 141 1.098050 GCCAGCATGAGTAAACCAGG 58.902 55.000 0.00 0.00 39.69 4.45
141 142 1.741706 CAGCCAGCATGAGTAAACCAG 59.258 52.381 0.00 0.00 39.69 4.00
142 143 1.350684 TCAGCCAGCATGAGTAAACCA 59.649 47.619 0.00 0.00 39.69 3.67
143 144 2.113860 TCAGCCAGCATGAGTAAACC 57.886 50.000 0.00 0.00 39.69 3.27
144 145 3.944015 AGAATCAGCCAGCATGAGTAAAC 59.056 43.478 0.00 0.00 39.69 2.01
145 146 4.194640 GAGAATCAGCCAGCATGAGTAAA 58.805 43.478 0.00 0.00 33.20 2.01
146 147 3.198417 TGAGAATCAGCCAGCATGAGTAA 59.802 43.478 0.00 0.00 42.56 2.24
147 148 2.767960 TGAGAATCAGCCAGCATGAGTA 59.232 45.455 0.00 0.00 42.56 2.59
148 149 1.558294 TGAGAATCAGCCAGCATGAGT 59.442 47.619 0.00 0.00 42.56 3.41
149 150 2.327200 TGAGAATCAGCCAGCATGAG 57.673 50.000 0.00 0.00 42.56 2.90
174 175 2.890311 TGTCAATCCCAGCGTGATTTTT 59.110 40.909 0.00 0.00 30.16 1.94
175 176 2.489329 CTGTCAATCCCAGCGTGATTTT 59.511 45.455 0.00 0.00 30.16 1.82
176 177 2.086869 CTGTCAATCCCAGCGTGATTT 58.913 47.619 0.00 0.00 30.16 2.17
177 178 1.278985 TCTGTCAATCCCAGCGTGATT 59.721 47.619 0.00 0.00 32.77 2.57
178 179 0.904649 TCTGTCAATCCCAGCGTGAT 59.095 50.000 0.00 0.00 0.00 3.06
179 180 0.037326 GTCTGTCAATCCCAGCGTGA 60.037 55.000 0.00 0.00 0.00 4.35
180 181 0.320683 TGTCTGTCAATCCCAGCGTG 60.321 55.000 0.00 0.00 0.00 5.34
181 182 0.396435 TTGTCTGTCAATCCCAGCGT 59.604 50.000 0.00 0.00 0.00 5.07
182 183 1.522668 TTTGTCTGTCAATCCCAGCG 58.477 50.000 0.00 0.00 35.84 5.18
183 184 2.622942 TGTTTTGTCTGTCAATCCCAGC 59.377 45.455 0.00 0.00 35.84 4.85
184 185 4.097741 TGTTGTTTTGTCTGTCAATCCCAG 59.902 41.667 0.00 0.00 35.84 4.45
185 186 4.019858 TGTTGTTTTGTCTGTCAATCCCA 58.980 39.130 0.00 0.00 35.84 4.37
186 187 4.647424 TGTTGTTTTGTCTGTCAATCCC 57.353 40.909 0.00 0.00 35.84 3.85
187 188 5.406649 TGTTGTTGTTTTGTCTGTCAATCC 58.593 37.500 0.00 0.00 35.84 3.01
188 189 6.942886 TTGTTGTTGTTTTGTCTGTCAATC 57.057 33.333 0.00 0.00 35.84 2.67
189 190 6.703607 TGTTTGTTGTTGTTTTGTCTGTCAAT 59.296 30.769 0.00 0.00 35.84 2.57
190 191 6.042777 TGTTTGTTGTTGTTTTGTCTGTCAA 58.957 32.000 0.00 0.00 0.00 3.18
191 192 5.592054 TGTTTGTTGTTGTTTTGTCTGTCA 58.408 33.333 0.00 0.00 0.00 3.58
192 193 6.517914 TTGTTTGTTGTTGTTTTGTCTGTC 57.482 33.333 0.00 0.00 0.00 3.51
193 194 6.758886 TCTTTGTTTGTTGTTGTTTTGTCTGT 59.241 30.769 0.00 0.00 0.00 3.41
194 195 7.171447 TCTTTGTTTGTTGTTGTTTTGTCTG 57.829 32.000 0.00 0.00 0.00 3.51
195 196 7.778470 TTCTTTGTTTGTTGTTGTTTTGTCT 57.222 28.000 0.00 0.00 0.00 3.41
196 197 8.828029 TTTTCTTTGTTTGTTGTTGTTTTGTC 57.172 26.923 0.00 0.00 0.00 3.18
197 198 7.912773 CCTTTTCTTTGTTTGTTGTTGTTTTGT 59.087 29.630 0.00 0.00 0.00 2.83
198 199 7.096681 GCCTTTTCTTTGTTTGTTGTTGTTTTG 60.097 33.333 0.00 0.00 0.00 2.44
199 200 6.915300 GCCTTTTCTTTGTTTGTTGTTGTTTT 59.085 30.769 0.00 0.00 0.00 2.43
200 201 6.038714 TGCCTTTTCTTTGTTTGTTGTTGTTT 59.961 30.769 0.00 0.00 0.00 2.83
201 202 5.529060 TGCCTTTTCTTTGTTTGTTGTTGTT 59.471 32.000 0.00 0.00 0.00 2.83
202 203 5.059833 TGCCTTTTCTTTGTTTGTTGTTGT 58.940 33.333 0.00 0.00 0.00 3.32
203 204 5.604010 TGCCTTTTCTTTGTTTGTTGTTG 57.396 34.783 0.00 0.00 0.00 3.33
204 205 5.529060 TGTTGCCTTTTCTTTGTTTGTTGTT 59.471 32.000 0.00 0.00 0.00 2.83
205 206 5.059833 TGTTGCCTTTTCTTTGTTTGTTGT 58.940 33.333 0.00 0.00 0.00 3.32
206 207 5.604010 TGTTGCCTTTTCTTTGTTTGTTG 57.396 34.783 0.00 0.00 0.00 3.33
207 208 6.038714 TGTTTGTTGCCTTTTCTTTGTTTGTT 59.961 30.769 0.00 0.00 0.00 2.83
208 209 5.529060 TGTTTGTTGCCTTTTCTTTGTTTGT 59.471 32.000 0.00 0.00 0.00 2.83
209 210 5.995055 TGTTTGTTGCCTTTTCTTTGTTTG 58.005 33.333 0.00 0.00 0.00 2.93
210 211 6.262049 ACTTGTTTGTTGCCTTTTCTTTGTTT 59.738 30.769 0.00 0.00 0.00 2.83
211 212 5.762711 ACTTGTTTGTTGCCTTTTCTTTGTT 59.237 32.000 0.00 0.00 0.00 2.83
212 213 5.179182 CACTTGTTTGTTGCCTTTTCTTTGT 59.821 36.000 0.00 0.00 0.00 2.83
213 214 5.620467 CACTTGTTTGTTGCCTTTTCTTTG 58.380 37.500 0.00 0.00 0.00 2.77
214 215 4.154015 GCACTTGTTTGTTGCCTTTTCTTT 59.846 37.500 0.00 0.00 0.00 2.52
215 216 3.684305 GCACTTGTTTGTTGCCTTTTCTT 59.316 39.130 0.00 0.00 0.00 2.52
216 217 3.055891 AGCACTTGTTTGTTGCCTTTTCT 60.056 39.130 0.00 0.00 0.00 2.52
217 218 3.261580 AGCACTTGTTTGTTGCCTTTTC 58.738 40.909 0.00 0.00 0.00 2.29
218 219 3.333029 AGCACTTGTTTGTTGCCTTTT 57.667 38.095 0.00 0.00 0.00 2.27
219 220 4.464069 TTAGCACTTGTTTGTTGCCTTT 57.536 36.364 0.00 0.00 0.00 3.11
220 221 4.464069 TTTAGCACTTGTTTGTTGCCTT 57.536 36.364 0.00 0.00 0.00 4.35
221 222 4.464069 TTTTAGCACTTGTTTGTTGCCT 57.536 36.364 0.00 0.00 0.00 4.75
271 272 9.298250 GGTGTGTCTAGGACTCATTTAGATATA 57.702 37.037 5.87 0.00 38.13 0.86
272 273 7.233757 GGGTGTGTCTAGGACTCATTTAGATAT 59.766 40.741 5.87 0.00 38.13 1.63
273 274 6.550108 GGGTGTGTCTAGGACTCATTTAGATA 59.450 42.308 5.87 0.00 38.13 1.98
274 275 5.364157 GGGTGTGTCTAGGACTCATTTAGAT 59.636 44.000 5.87 0.00 38.13 1.98
275 276 4.710375 GGGTGTGTCTAGGACTCATTTAGA 59.290 45.833 5.87 0.00 38.13 2.10
276 277 4.466370 TGGGTGTGTCTAGGACTCATTTAG 59.534 45.833 5.87 0.00 38.13 1.85
277 278 4.422057 TGGGTGTGTCTAGGACTCATTTA 58.578 43.478 5.87 0.00 38.13 1.40
278 279 3.248024 TGGGTGTGTCTAGGACTCATTT 58.752 45.455 5.87 0.00 38.13 2.32
279 280 2.902608 TGGGTGTGTCTAGGACTCATT 58.097 47.619 5.87 0.00 38.13 2.57
280 281 2.623418 TGGGTGTGTCTAGGACTCAT 57.377 50.000 5.87 0.00 38.13 2.90
281 282 2.391926 TTGGGTGTGTCTAGGACTCA 57.608 50.000 0.00 0.00 34.38 3.41
282 283 3.983044 AATTGGGTGTGTCTAGGACTC 57.017 47.619 0.00 0.00 33.15 3.36
283 284 4.426704 ACTAATTGGGTGTGTCTAGGACT 58.573 43.478 0.00 0.00 33.15 3.85
284 285 4.820894 ACTAATTGGGTGTGTCTAGGAC 57.179 45.455 0.00 0.00 0.00 3.85
285 286 7.842743 ACTAATACTAATTGGGTGTGTCTAGGA 59.157 37.037 0.00 0.00 0.00 2.94
286 287 8.019656 ACTAATACTAATTGGGTGTGTCTAGG 57.980 38.462 0.00 0.00 0.00 3.02
287 288 9.314321 CAACTAATACTAATTGGGTGTGTCTAG 57.686 37.037 0.00 0.00 36.72 2.43
288 289 9.038072 TCAACTAATACTAATTGGGTGTGTCTA 57.962 33.333 0.00 0.00 40.94 2.59
289 290 7.822822 GTCAACTAATACTAATTGGGTGTGTCT 59.177 37.037 0.00 0.00 40.94 3.41
290 291 7.822822 AGTCAACTAATACTAATTGGGTGTGTC 59.177 37.037 0.00 0.00 40.94 3.67
291 292 7.686434 AGTCAACTAATACTAATTGGGTGTGT 58.314 34.615 0.00 0.00 40.94 3.72
292 293 7.280205 GGAGTCAACTAATACTAATTGGGTGTG 59.720 40.741 0.00 0.00 40.94 3.82
293 294 7.336396 GGAGTCAACTAATACTAATTGGGTGT 58.664 38.462 0.00 0.00 40.94 4.16
294 295 6.766467 GGGAGTCAACTAATACTAATTGGGTG 59.234 42.308 0.00 0.00 41.36 4.61
295 296 6.407752 CGGGAGTCAACTAATACTAATTGGGT 60.408 42.308 0.00 0.00 0.00 4.51
296 297 5.989777 CGGGAGTCAACTAATACTAATTGGG 59.010 44.000 0.00 0.00 0.00 4.12
297 298 5.465724 GCGGGAGTCAACTAATACTAATTGG 59.534 44.000 0.00 0.00 0.00 3.16
298 299 6.281405 AGCGGGAGTCAACTAATACTAATTG 58.719 40.000 0.00 0.00 0.00 2.32
322 323 1.152525 TTTGTTTAGGGGCCGGCAA 60.153 52.632 30.85 11.36 0.00 4.52
324 325 1.605451 AGTTTGTTTAGGGGCCGGC 60.605 57.895 21.18 21.18 0.00 6.13
325 326 1.248101 CCAGTTTGTTTAGGGGCCGG 61.248 60.000 0.00 0.00 0.00 6.13
326 327 1.873270 GCCAGTTTGTTTAGGGGCCG 61.873 60.000 0.00 0.00 35.42 6.13
327 328 1.972198 GCCAGTTTGTTTAGGGGCC 59.028 57.895 0.00 0.00 35.42 5.80
354 355 1.986698 GCATGCAGTGCGAGAAATTT 58.013 45.000 14.21 0.00 45.23 1.82
599 653 3.450817 ACTGATATGTGAACCGGTCATGA 59.549 43.478 8.04 0.00 38.90 3.07
633 687 7.116075 ACAAACATTAGCCTGATGGTTACATA 58.884 34.615 0.00 0.00 37.47 2.29
669 724 6.350194 GGGCGTTGATAGTGATATGATACAGA 60.350 42.308 0.00 0.00 0.00 3.41
683 738 7.165812 CGAAAATTAATCAAAGGGCGTTGATAG 59.834 37.037 13.46 0.00 45.42 2.08
686 741 5.157781 CGAAAATTAATCAAAGGGCGTTGA 58.842 37.500 4.91 4.91 41.59 3.18
732 790 3.181397 GTCATTGAATTCGCCCAATGTG 58.819 45.455 14.02 0.85 45.79 3.21
736 794 0.170116 GCGTCATTGAATTCGCCCAA 59.830 50.000 11.61 0.00 42.33 4.12
773 831 3.119531 TGGAACGTTACTATACACCGGTG 60.120 47.826 32.83 32.83 0.00 4.94
809 867 4.490160 CCGCGTGCTTAAAATTAACAATGC 60.490 41.667 4.92 0.00 0.00 3.56
874 948 8.750298 TGAAGCTACTTATATAGGTAGGCATTC 58.250 37.037 25.23 20.23 36.66 2.67
908 986 2.009774 GAGAATGCGTGTTGCCATAGT 58.990 47.619 0.00 0.00 45.60 2.12
936 1025 4.281182 GGAAGAGAGAAGTGTAAGTGGTCA 59.719 45.833 0.00 0.00 0.00 4.02
999 1121 3.133464 GCAGCAACAGCCGCCATA 61.133 61.111 0.00 0.00 0.00 2.74
1241 1373 9.902196 CTGCAGATATATATGTTTGCAAATTCA 57.098 29.630 22.32 10.07 40.56 2.57
1264 1412 1.144936 AGCCTGACTAATCGGCTGC 59.855 57.895 8.41 0.00 46.41 5.25
1293 1447 5.875224 TCCCTATTCATCAACAACTCAACA 58.125 37.500 0.00 0.00 0.00 3.33
1310 1464 2.037772 GACGGAAGCATCACATCCCTAT 59.962 50.000 0.00 0.00 0.00 2.57
1334 1488 2.845795 AACGGGGTTGGGTCGAGT 60.846 61.111 0.00 0.00 0.00 4.18
1343 1498 4.324991 GTCGGGCTGAACGGGGTT 62.325 66.667 0.00 0.00 0.00 4.11
1400 1555 1.424493 CGTCAATCAGCTCGAAGCCC 61.424 60.000 3.66 0.00 43.77 5.19
1526 1690 0.094730 CGGACGGCATTTCGAAGTTC 59.905 55.000 0.00 0.00 0.00 3.01
1631 1795 2.095252 GCCCTTGACGACGAAGCTC 61.095 63.158 0.00 0.00 0.00 4.09
1697 1861 4.154347 GAGGAGCAGTGGGAGCGG 62.154 72.222 0.00 0.00 37.01 5.52
2113 2295 3.063704 CACCATGCATGCACCCGT 61.064 61.111 25.37 16.14 0.00 5.28
2114 2296 1.875420 TTTCACCATGCATGCACCCG 61.875 55.000 25.37 15.44 0.00 5.28
2115 2297 0.108520 CTTTCACCATGCATGCACCC 60.109 55.000 25.37 0.00 0.00 4.61
2116 2298 0.889994 TCTTTCACCATGCATGCACC 59.110 50.000 25.37 0.00 0.00 5.01
2381 2582 8.892723 CATGCCTATGAGTGTACATCTTTAAAA 58.107 33.333 0.00 0.00 36.36 1.52
2385 2588 4.818546 GCATGCCTATGAGTGTACATCTTT 59.181 41.667 6.36 0.00 36.36 2.52
2397 2600 9.695526 GAAAATACAAATAATGCATGCCTATGA 57.304 29.630 16.68 0.00 36.36 2.15
2398 2601 9.478768 TGAAAATACAAATAATGCATGCCTATG 57.521 29.630 16.68 8.21 37.36 2.23
2431 2634 3.612423 TGCGTCTCATCTTTGTATCGTTG 59.388 43.478 0.00 0.00 0.00 4.10
2464 2667 8.000780 ACTGCTTGTATTCTTCTTGTTTTTCT 57.999 30.769 0.00 0.00 0.00 2.52
2466 2669 8.034804 ACAACTGCTTGTATTCTTCTTGTTTTT 58.965 29.630 0.00 0.00 38.95 1.94
2469 2672 6.699575 ACAACTGCTTGTATTCTTCTTGTT 57.300 33.333 0.00 0.00 38.95 2.83
2487 2690 3.118738 GGGTAGTATGCAGCAGTACAACT 60.119 47.826 14.68 2.08 0.00 3.16
2496 2700 0.598680 CAGCGAGGGTAGTATGCAGC 60.599 60.000 0.00 0.00 0.00 5.25
2505 2709 0.901114 TGGTAGTTGCAGCGAGGGTA 60.901 55.000 0.00 0.00 0.00 3.69
2506 2710 1.764571 TTGGTAGTTGCAGCGAGGGT 61.765 55.000 0.00 0.00 0.00 4.34
2511 2715 0.593128 AAAGCTTGGTAGTTGCAGCG 59.407 50.000 0.00 0.00 37.35 5.18
2514 2718 2.356665 TGGAAAGCTTGGTAGTTGCA 57.643 45.000 0.00 0.00 0.00 4.08
2526 2730 3.301642 CGCTCATCGAAAAATTGGAAAGC 59.698 43.478 0.00 0.00 41.67 3.51
2539 2743 4.451150 GTGGGTGCCGCTCATCGA 62.451 66.667 0.00 0.00 41.67 3.59
2542 2746 4.722700 GGTGTGGGTGCCGCTCAT 62.723 66.667 0.00 0.00 34.70 2.90
2608 2848 0.033011 AGGCTGATCCAGTACCTCGT 60.033 55.000 0.00 0.00 37.29 4.18
2649 2889 0.669318 GACGACATGAGGAACGGCAA 60.669 55.000 0.00 0.00 33.73 4.52
2652 2892 1.153628 GGGACGACATGAGGAACGG 60.154 63.158 0.00 0.00 0.00 4.44
2653 2893 1.153628 GGGGACGACATGAGGAACG 60.154 63.158 0.00 0.00 0.00 3.95
2679 2919 3.673323 CAAAGCTAAAGGCGGGTTTGATC 60.673 47.826 16.11 0.00 46.95 2.92
2680 2920 2.231235 CAAAGCTAAAGGCGGGTTTGAT 59.769 45.455 16.11 0.00 46.95 2.57
2681 2921 1.611491 CAAAGCTAAAGGCGGGTTTGA 59.389 47.619 16.11 0.00 46.95 2.69
2682 2922 1.611491 TCAAAGCTAAAGGCGGGTTTG 59.389 47.619 15.46 15.46 46.02 2.93
2689 2929 5.065218 TCGATTTCAGATCAAAGCTAAAGGC 59.935 40.000 0.00 0.00 42.19 4.35
2690 2930 6.457528 GGTCGATTTCAGATCAAAGCTAAAGG 60.458 42.308 0.00 0.00 0.00 3.11
2691 2931 6.481984 GGTCGATTTCAGATCAAAGCTAAAG 58.518 40.000 0.00 0.00 0.00 1.85
2692 2932 5.063438 CGGTCGATTTCAGATCAAAGCTAAA 59.937 40.000 0.00 0.00 0.00 1.85
2693 2933 4.566759 CGGTCGATTTCAGATCAAAGCTAA 59.433 41.667 0.00 0.00 0.00 3.09
2694 2934 4.112634 CGGTCGATTTCAGATCAAAGCTA 58.887 43.478 0.00 0.00 0.00 3.32
2695 2935 2.932614 CGGTCGATTTCAGATCAAAGCT 59.067 45.455 0.00 0.00 0.00 3.74
2702 2942 0.527817 GGCGTCGGTCGATTTCAGAT 60.528 55.000 0.00 0.00 42.86 2.90
2736 2976 1.804748 GGTTTTGCTAACTCAGGTCCG 59.195 52.381 3.00 0.00 0.00 4.79
2748 2988 7.378181 CAACTGAGGTAATTTATGGTTTTGCT 58.622 34.615 0.00 0.00 0.00 3.91
2759 2999 2.858745 ACGCACCAACTGAGGTAATTT 58.141 42.857 0.00 0.00 40.77 1.82
2785 3025 4.039245 TGCGAGAGGGGAAAGAATACTATG 59.961 45.833 0.00 0.00 0.00 2.23
2821 3061 4.817318 AGATCGAAGAGAAGAAGGCTTT 57.183 40.909 0.00 0.00 43.63 3.51
2825 3065 3.112580 GCGAAGATCGAAGAGAAGAAGG 58.887 50.000 3.61 0.00 43.74 3.46
2826 3066 3.112580 GGCGAAGATCGAAGAGAAGAAG 58.887 50.000 3.61 0.00 43.74 2.85
2833 3073 2.104331 GCCGGCGAAGATCGAAGA 59.896 61.111 12.58 0.00 43.74 2.87
2944 3184 4.944372 GTCGCCGCTCCCATACCG 62.944 72.222 0.00 0.00 0.00 4.02
2945 3185 3.792053 CTGTCGCCGCTCCCATACC 62.792 68.421 0.00 0.00 0.00 2.73
2946 3186 2.279517 CTGTCGCCGCTCCCATAC 60.280 66.667 0.00 0.00 0.00 2.39
2947 3187 4.221422 GCTGTCGCCGCTCCCATA 62.221 66.667 0.00 0.00 0.00 2.74
2968 3208 1.868251 CTAGAACGACCGCAGACGC 60.868 63.158 0.00 0.00 38.22 5.19
2969 3209 1.868251 GCTAGAACGACCGCAGACG 60.868 63.158 0.00 0.00 39.67 4.18
2970 3210 1.868251 CGCTAGAACGACCGCAGAC 60.868 63.158 0.00 0.00 34.06 3.51
2971 3211 2.483745 CGCTAGAACGACCGCAGA 59.516 61.111 0.00 0.00 34.06 4.26
2972 3212 2.579787 CCGCTAGAACGACCGCAG 60.580 66.667 0.00 0.00 34.06 5.18
2973 3213 4.789075 GCCGCTAGAACGACCGCA 62.789 66.667 0.00 0.00 34.06 5.69
2977 3217 4.789075 TGCCGCCGCTAGAACGAC 62.789 66.667 0.00 0.00 35.36 4.34
2978 3218 3.365291 ATTGCCGCCGCTAGAACGA 62.365 57.895 0.00 0.00 35.36 3.85
2979 3219 2.890474 ATTGCCGCCGCTAGAACG 60.890 61.111 0.00 0.00 35.36 3.95
2980 3220 2.709475 CATTGCCGCCGCTAGAAC 59.291 61.111 0.00 0.00 35.36 3.01
2981 3221 2.513666 CCATTGCCGCCGCTAGAA 60.514 61.111 0.00 0.00 35.36 2.10
2982 3222 3.733344 GACCATTGCCGCCGCTAGA 62.733 63.158 0.00 0.00 35.36 2.43
2983 3223 3.272334 GACCATTGCCGCCGCTAG 61.272 66.667 0.00 0.00 35.36 3.42
2987 3227 4.160635 GAACGACCATTGCCGCCG 62.161 66.667 0.00 0.00 0.00 6.46
2988 3228 4.160635 CGAACGACCATTGCCGCC 62.161 66.667 0.00 0.00 0.00 6.13
2989 3229 4.160635 CCGAACGACCATTGCCGC 62.161 66.667 0.00 0.00 0.00 6.53
2990 3230 2.322081 AACCGAACGACCATTGCCG 61.322 57.895 0.00 0.00 0.00 5.69
2991 3231 1.209127 CAACCGAACGACCATTGCC 59.791 57.895 0.00 0.00 0.00 4.52
2992 3232 0.309612 AACAACCGAACGACCATTGC 59.690 50.000 0.00 0.00 0.00 3.56
2993 3233 1.600013 TGAACAACCGAACGACCATTG 59.400 47.619 0.00 0.00 0.00 2.82
2994 3234 1.956297 TGAACAACCGAACGACCATT 58.044 45.000 0.00 0.00 0.00 3.16
2995 3235 1.804151 CATGAACAACCGAACGACCAT 59.196 47.619 0.00 0.00 0.00 3.55
2996 3236 1.222300 CATGAACAACCGAACGACCA 58.778 50.000 0.00 0.00 0.00 4.02
2997 3237 0.515564 CCATGAACAACCGAACGACC 59.484 55.000 0.00 0.00 0.00 4.79
2998 3238 1.193874 GTCCATGAACAACCGAACGAC 59.806 52.381 0.00 0.00 0.00 4.34
2999 3239 1.504359 GTCCATGAACAACCGAACGA 58.496 50.000 0.00 0.00 0.00 3.85
3000 3240 0.162933 CGTCCATGAACAACCGAACG 59.837 55.000 0.00 0.00 0.00 3.95
3001 3241 1.193874 GACGTCCATGAACAACCGAAC 59.806 52.381 3.51 0.00 0.00 3.95
3002 3242 1.504359 GACGTCCATGAACAACCGAA 58.496 50.000 3.51 0.00 0.00 4.30
3003 3243 0.665068 CGACGTCCATGAACAACCGA 60.665 55.000 10.58 0.00 0.00 4.69
3004 3244 0.665068 TCGACGTCCATGAACAACCG 60.665 55.000 10.58 0.00 0.00 4.44
3005 3245 1.393539 CATCGACGTCCATGAACAACC 59.606 52.381 17.08 0.00 0.00 3.77
3006 3246 2.066262 ACATCGACGTCCATGAACAAC 58.934 47.619 26.79 0.00 0.00 3.32
3007 3247 2.448926 ACATCGACGTCCATGAACAA 57.551 45.000 26.79 0.00 0.00 2.83
3008 3248 3.579335 TTACATCGACGTCCATGAACA 57.421 42.857 26.79 10.56 0.00 3.18
3009 3249 5.464965 AAATTACATCGACGTCCATGAAC 57.535 39.130 26.79 0.00 0.00 3.18
3010 3250 6.489127 AAAAATTACATCGACGTCCATGAA 57.511 33.333 26.79 16.93 0.00 2.57
3011 3251 7.780008 ATAAAAATTACATCGACGTCCATGA 57.220 32.000 26.79 11.76 0.00 3.07
3014 3254 9.100554 ACATAATAAAAATTACATCGACGTCCA 57.899 29.630 10.58 0.00 0.00 4.02
3015 3255 9.925268 AACATAATAAAAATTACATCGACGTCC 57.075 29.630 10.58 0.00 0.00 4.79
3036 3276 8.832521 CCAGTAGTACAAAACACTTCAAACATA 58.167 33.333 2.52 0.00 0.00 2.29
3037 3277 7.338449 ACCAGTAGTACAAAACACTTCAAACAT 59.662 33.333 2.52 0.00 0.00 2.71
3038 3278 6.655848 ACCAGTAGTACAAAACACTTCAAACA 59.344 34.615 2.52 0.00 0.00 2.83
3039 3279 7.080353 ACCAGTAGTACAAAACACTTCAAAC 57.920 36.000 2.52 0.00 0.00 2.93
3040 3280 8.789825 TTACCAGTAGTACAAAACACTTCAAA 57.210 30.769 2.52 0.00 0.00 2.69
3041 3281 8.042515 ACTTACCAGTAGTACAAAACACTTCAA 58.957 33.333 2.52 0.00 0.00 2.69
3042 3282 7.558604 ACTTACCAGTAGTACAAAACACTTCA 58.441 34.615 2.52 0.00 0.00 3.02
3043 3283 7.924947 AGACTTACCAGTAGTACAAAACACTTC 59.075 37.037 2.52 0.00 31.22 3.01
3044 3284 7.789026 AGACTTACCAGTAGTACAAAACACTT 58.211 34.615 2.52 0.00 31.22 3.16
3045 3285 7.357429 AGACTTACCAGTAGTACAAAACACT 57.643 36.000 2.52 0.00 31.22 3.55
3046 3286 7.707893 TGAAGACTTACCAGTAGTACAAAACAC 59.292 37.037 2.52 0.00 31.22 3.32
3047 3287 7.784037 TGAAGACTTACCAGTAGTACAAAACA 58.216 34.615 2.52 0.00 31.22 2.83
3048 3288 8.828688 ATGAAGACTTACCAGTAGTACAAAAC 57.171 34.615 2.52 0.00 31.22 2.43
3058 3298 9.647918 TCAGATCTATTATGAAGACTTACCAGT 57.352 33.333 0.00 0.00 35.17 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.