Multiple sequence alignment - TraesCS3A01G378400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G378400 chr3A 100.000 2426 0 0 1 2426 627928845 627931270 0.000000e+00 4481
1 TraesCS3A01G378400 chr3A 96.209 422 15 1 2003 2424 83696028 83696448 0.000000e+00 689
2 TraesCS3A01G378400 chr3A 95.981 423 16 1 2002 2424 83702960 83703381 0.000000e+00 686
3 TraesCS3A01G378400 chr3A 95.765 425 16 2 2002 2425 292257762 292257339 0.000000e+00 684
4 TraesCS3A01G378400 chr3A 95.745 423 17 1 2003 2425 562787726 562787305 0.000000e+00 680
5 TraesCS3A01G378400 chr3D 91.479 1291 67 22 316 1598 484827520 484828775 0.000000e+00 1735
6 TraesCS3A01G378400 chr3D 79.837 491 93 5 1 490 429297151 429297636 1.070000e-93 353
7 TraesCS3A01G378400 chr3D 93.750 192 11 1 1814 2004 484828837 484829028 1.100000e-73 287
8 TraesCS3A01G378400 chr3D 88.021 192 23 0 1593 1784 3541879 3542070 6.750000e-56 228
9 TraesCS3A01G378400 chr3B 91.904 1124 60 13 424 1537 647698221 647699323 0.000000e+00 1543
10 TraesCS3A01G378400 chr3B 80.492 528 88 10 1 521 504988590 504989109 8.130000e-105 390
11 TraesCS3A01G378400 chr3B 78.435 524 105 6 1 521 112391438 112390920 3.860000e-88 335
12 TraesCS3A01G378400 chr3B 87.755 196 23 1 1810 2004 647699412 647699607 6.750000e-56 228
13 TraesCS3A01G378400 chr4A 95.602 432 16 2 1996 2425 532309960 532310390 0.000000e+00 689
14 TraesCS3A01G378400 chr4A 79.762 504 91 7 22 520 724122057 724122554 2.970000e-94 355
15 TraesCS3A01G378400 chr2A 95.775 426 18 0 2000 2425 416940321 416940746 0.000000e+00 688
16 TraesCS3A01G378400 chr1A 95.785 427 16 2 1999 2425 548394216 548393792 0.000000e+00 688
17 TraesCS3A01G378400 chr7B 95.765 425 16 2 2002 2425 841541 841118 0.000000e+00 684
18 TraesCS3A01G378400 chr5A 95.755 424 17 1 2002 2425 622138409 622138831 0.000000e+00 682
19 TraesCS3A01G378400 chr5A 89.418 189 20 0 1598 1786 552159763 552159575 3.120000e-59 239
20 TraesCS3A01G378400 chr5A 89.189 185 20 0 1600 1784 670102562 670102746 5.220000e-57 231
21 TraesCS3A01G378400 chr1D 82.600 523 82 8 1 521 487023087 487022572 1.020000e-123 453
22 TraesCS3A01G378400 chr1B 82.027 523 86 6 1 521 678205498 678204982 2.860000e-119 438
23 TraesCS3A01G378400 chr4B 80.497 523 89 7 1 522 380675685 380675175 2.920000e-104 388
24 TraesCS3A01G378400 chr4B 79.886 527 93 8 1 521 107665955 107666474 8.190000e-100 374
25 TraesCS3A01G378400 chr2D 80.153 524 92 12 1 521 579906542 579906028 4.890000e-102 381
26 TraesCS3A01G378400 chr7A 88.832 197 20 2 1591 1787 595642475 595642669 8.670000e-60 241
27 TraesCS3A01G378400 chr7A 87.817 197 23 1 1591 1787 595802083 595802278 1.880000e-56 230
28 TraesCS3A01G378400 chr2B 89.418 189 20 0 1596 1784 458962478 458962290 3.120000e-59 239
29 TraesCS3A01G378400 chr7D 88.482 191 22 0 1596 1786 45145963 45145773 5.220000e-57 231
30 TraesCS3A01G378400 chr7D 87.562 201 23 2 1589 1787 433896576 433896376 5.220000e-57 231
31 TraesCS3A01G378400 chrUn 87.629 194 22 2 1587 1779 94043078 94043270 8.730000e-55 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G378400 chr3A 627928845 627931270 2425 False 4481.0 4481 100.0000 1 2426 1 chr3A.!!$F3 2425
1 TraesCS3A01G378400 chr3D 484827520 484829028 1508 False 1011.0 1735 92.6145 316 2004 2 chr3D.!!$F3 1688
2 TraesCS3A01G378400 chr3B 647698221 647699607 1386 False 885.5 1543 89.8295 424 2004 2 chr3B.!!$F2 1580
3 TraesCS3A01G378400 chr3B 504988590 504989109 519 False 390.0 390 80.4920 1 521 1 chr3B.!!$F1 520
4 TraesCS3A01G378400 chr3B 112390920 112391438 518 True 335.0 335 78.4350 1 521 1 chr3B.!!$R1 520
5 TraesCS3A01G378400 chr1D 487022572 487023087 515 True 453.0 453 82.6000 1 521 1 chr1D.!!$R1 520
6 TraesCS3A01G378400 chr1B 678204982 678205498 516 True 438.0 438 82.0270 1 521 1 chr1B.!!$R1 520
7 TraesCS3A01G378400 chr4B 380675175 380675685 510 True 388.0 388 80.4970 1 522 1 chr4B.!!$R1 521
8 TraesCS3A01G378400 chr4B 107665955 107666474 519 False 374.0 374 79.8860 1 521 1 chr4B.!!$F1 520
9 TraesCS3A01G378400 chr2D 579906028 579906542 514 True 381.0 381 80.1530 1 521 1 chr2D.!!$R1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 391 0.24746 TGAGCAGGACACAGATTCCG 59.753 55.0 0.0 0.0 38.29 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 2179 0.026803 CTTGAACGCTTCCGCATAGC 59.973 55.0 0.0 0.0 38.22 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.449227 TCGCCGTCATCGCCTCTT 61.449 61.111 0.00 0.00 35.54 2.85
61 62 1.227823 TCGGAGGCAACCACAACTG 60.228 57.895 2.06 0.00 37.17 3.16
78 80 2.330216 ACTGGTTGAAGTAGGCAGTCT 58.670 47.619 0.00 0.00 0.00 3.24
83 85 4.134563 GGTTGAAGTAGGCAGTCTGAAAA 58.865 43.478 3.32 0.00 0.00 2.29
86 88 5.227569 TGAAGTAGGCAGTCTGAAAATCA 57.772 39.130 3.32 0.00 0.00 2.57
108 110 0.843984 GTGCTAAGGCCCCATAGGAA 59.156 55.000 0.00 0.00 38.24 3.36
113 115 1.080638 AAGGCCCCATAGGAACAACA 58.919 50.000 0.00 0.00 38.24 3.33
117 119 1.271926 GCCCCATAGGAACAACACACT 60.272 52.381 0.00 0.00 38.24 3.55
134 136 6.080648 ACACACTAGAACAACAACTATCGA 57.919 37.500 0.00 0.00 0.00 3.59
152 155 4.902443 TCGACGATGAAGAGAAGCTTAT 57.098 40.909 0.00 0.00 36.83 1.73
192 206 5.991606 CCTGAAGACACATGAACAAAGACTA 59.008 40.000 0.00 0.00 0.00 2.59
279 293 4.873129 CACGCCCTCCGACGATGG 62.873 72.222 0.00 0.00 41.02 3.51
324 338 3.974642 ACTAGGCGGGGAGAATCTTATTT 59.025 43.478 0.00 0.00 33.73 1.40
344 358 0.740868 CATCTTCAAGAAGCCGCCGA 60.741 55.000 4.95 0.00 38.28 5.54
373 387 2.902486 TCTTTCTGAGCAGGACACAGAT 59.098 45.455 0.00 0.00 44.16 2.90
377 391 0.247460 TGAGCAGGACACAGATTCCG 59.753 55.000 0.00 0.00 38.29 4.30
410 425 4.946784 ATAAGCACCTAAAAACAGAGCG 57.053 40.909 0.00 0.00 0.00 5.03
411 426 1.523758 AGCACCTAAAAACAGAGCGG 58.476 50.000 0.00 0.00 0.00 5.52
459 476 1.622607 CGCACCCATGACCCTAAGGA 61.623 60.000 0.00 0.00 36.73 3.36
460 477 0.623723 GCACCCATGACCCTAAGGAA 59.376 55.000 0.00 0.00 36.73 3.36
471 488 1.555533 CCCTAAGGAACACAGGAGACC 59.444 57.143 0.00 0.00 34.00 3.85
537 554 1.463674 CGCAGATTACAAAAGGGGCT 58.536 50.000 0.00 0.00 0.00 5.19
548 565 2.363292 AAAGGGGCTGCTGCTCTGTT 62.363 55.000 15.64 6.59 40.19 3.16
552 569 2.688794 GGCTGCTGCTCTGTTGCTC 61.689 63.158 15.64 0.00 39.59 4.26
660 680 1.281925 CCCTCCTACCAGCACCCATT 61.282 60.000 0.00 0.00 0.00 3.16
670 690 2.555227 CCAGCACCCATTCCTTGTACTT 60.555 50.000 0.00 0.00 0.00 2.24
683 703 9.367444 CATTCCTTGTACTTATTCGAGTAGTTT 57.633 33.333 0.00 0.00 33.04 2.66
721 741 1.942657 GACATGATGGTGTCCATTCCG 59.057 52.381 0.00 0.00 45.26 4.30
753 773 3.115892 GCCGCCGTTGATCGTTCA 61.116 61.111 0.00 0.00 37.94 3.18
754 774 2.673114 GCCGCCGTTGATCGTTCAA 61.673 57.895 4.80 4.80 39.54 2.69
907 930 2.288013 CGTGCTACGCTACCACATG 58.712 57.895 0.00 0.00 33.65 3.21
997 1020 1.003545 CGGTTGATAATTCAGCAGCGG 60.004 52.381 0.00 0.00 34.98 5.52
1009 1032 2.517450 GCAGCGGCGATGTCAGTAC 61.517 63.158 26.78 4.62 0.00 2.73
1072 1095 1.183549 GGCCGTCCAAGAAGTAGAGA 58.816 55.000 0.00 0.00 0.00 3.10
1513 1542 3.008923 CAGCTTCTTCCTTTCTTCCTCCT 59.991 47.826 0.00 0.00 0.00 3.69
1567 1596 1.187974 TCCCATGCTTGGCTTGATTG 58.812 50.000 13.15 0.00 42.15 2.67
1593 1624 8.027771 GTCTCTTTCGGTTGAGTAAGATTCTTA 58.972 37.037 1.90 1.90 29.44 2.10
1598 1629 9.720769 TTTCGGTTGAGTAAGATTCTTAGATTT 57.279 29.630 6.37 0.00 0.00 2.17
1601 1632 9.250624 CGGTTGAGTAAGATTCTTAGATTTAGG 57.749 37.037 6.37 0.00 0.00 2.69
1605 1636 9.488762 TGAGTAAGATTCTTAGATTTAGGTGGA 57.511 33.333 6.37 0.00 0.00 4.02
1606 1637 9.974980 GAGTAAGATTCTTAGATTTAGGTGGAG 57.025 37.037 6.37 0.00 0.00 3.86
1607 1638 9.495382 AGTAAGATTCTTAGATTTAGGTGGAGT 57.505 33.333 6.37 0.00 0.00 3.85
1610 1641 9.454859 AAGATTCTTAGATTTAGGTGGAGTTTG 57.545 33.333 0.00 0.00 0.00 2.93
1611 1642 8.826765 AGATTCTTAGATTTAGGTGGAGTTTGA 58.173 33.333 0.00 0.00 0.00 2.69
1612 1643 9.620259 GATTCTTAGATTTAGGTGGAGTTTGAT 57.380 33.333 0.00 0.00 0.00 2.57
1613 1644 9.981460 ATTCTTAGATTTAGGTGGAGTTTGATT 57.019 29.630 0.00 0.00 0.00 2.57
1614 1645 9.449719 TTCTTAGATTTAGGTGGAGTTTGATTC 57.550 33.333 0.00 0.00 0.00 2.52
1615 1646 8.826765 TCTTAGATTTAGGTGGAGTTTGATTCT 58.173 33.333 0.00 0.00 0.00 2.40
1616 1647 9.103861 CTTAGATTTAGGTGGAGTTTGATTCTC 57.896 37.037 0.00 0.00 0.00 2.87
1617 1648 7.264294 AGATTTAGGTGGAGTTTGATTCTCT 57.736 36.000 0.00 0.00 33.06 3.10
1618 1649 8.380742 AGATTTAGGTGGAGTTTGATTCTCTA 57.619 34.615 0.00 0.00 33.06 2.43
1619 1650 8.482128 AGATTTAGGTGGAGTTTGATTCTCTAG 58.518 37.037 0.00 0.00 33.06 2.43
1620 1651 7.554959 TTTAGGTGGAGTTTGATTCTCTAGT 57.445 36.000 0.00 0.00 33.06 2.57
1621 1652 5.669164 AGGTGGAGTTTGATTCTCTAGTC 57.331 43.478 0.00 0.00 33.06 2.59
1622 1653 4.468153 AGGTGGAGTTTGATTCTCTAGTCC 59.532 45.833 0.00 0.00 33.06 3.85
1623 1654 4.468153 GGTGGAGTTTGATTCTCTAGTCCT 59.532 45.833 0.00 0.00 33.06 3.85
1624 1655 5.657302 GGTGGAGTTTGATTCTCTAGTCCTA 59.343 44.000 0.00 0.00 33.06 2.94
1625 1656 6.154706 GGTGGAGTTTGATTCTCTAGTCCTAA 59.845 42.308 0.00 0.00 33.06 2.69
1626 1657 7.310485 GGTGGAGTTTGATTCTCTAGTCCTAAA 60.310 40.741 0.00 0.00 33.06 1.85
1627 1658 8.095169 GTGGAGTTTGATTCTCTAGTCCTAAAA 58.905 37.037 0.00 0.00 33.06 1.52
1628 1659 8.095169 TGGAGTTTGATTCTCTAGTCCTAAAAC 58.905 37.037 0.00 0.00 33.06 2.43
1629 1660 8.315482 GGAGTTTGATTCTCTAGTCCTAAAACT 58.685 37.037 10.02 10.02 37.87 2.66
1630 1661 9.713713 GAGTTTGATTCTCTAGTCCTAAAACTT 57.286 33.333 10.95 1.08 35.95 2.66
1640 1671 9.642327 CTCTAGTCCTAAAACTTTTTCTAGTCC 57.358 37.037 0.00 0.00 29.80 3.85
1641 1672 9.377238 TCTAGTCCTAAAACTTTTTCTAGTCCT 57.623 33.333 0.00 0.00 29.80 3.85
1642 1673 9.999660 CTAGTCCTAAAACTTTTTCTAGTCCTT 57.000 33.333 0.00 0.00 0.00 3.36
1644 1675 9.999660 AGTCCTAAAACTTTTTCTAGTCCTTAG 57.000 33.333 0.00 0.00 0.00 2.18
1645 1676 9.217278 GTCCTAAAACTTTTTCTAGTCCTTAGG 57.783 37.037 13.36 13.36 40.62 2.69
1646 1677 9.162733 TCCTAAAACTTTTTCTAGTCCTTAGGA 57.837 33.333 15.98 15.98 42.76 2.94
1676 1707 4.429854 AAAAGACTCTCAAGAAGGTGCT 57.570 40.909 0.00 0.00 0.00 4.40
1677 1708 4.429854 AAAGACTCTCAAGAAGGTGCTT 57.570 40.909 0.00 0.00 0.00 3.91
1678 1709 3.676291 AGACTCTCAAGAAGGTGCTTC 57.324 47.619 0.00 0.00 40.45 3.86
1691 1722 6.729391 GAAGGTGCTTCTAAGGACTTTTAG 57.271 41.667 11.87 0.00 44.37 1.85
1692 1723 4.580868 AGGTGCTTCTAAGGACTTTTAGC 58.419 43.478 13.12 0.00 45.42 3.09
1693 1724 4.041691 AGGTGCTTCTAAGGACTTTTAGCA 59.958 41.667 13.12 9.74 45.42 3.49
1694 1725 4.760204 GGTGCTTCTAAGGACTTTTAGCAA 59.240 41.667 13.12 1.75 45.42 3.91
1695 1726 5.240844 GGTGCTTCTAAGGACTTTTAGCAAA 59.759 40.000 13.12 0.00 45.42 3.68
1696 1727 6.238925 GGTGCTTCTAAGGACTTTTAGCAAAA 60.239 38.462 13.12 0.00 45.42 2.44
1697 1728 7.200455 GTGCTTCTAAGGACTTTTAGCAAAAA 58.800 34.615 7.07 0.00 43.15 1.94
1733 1764 9.974980 AAGTTACACCATGTTTAATTTGTTAGG 57.025 29.630 0.00 0.00 0.00 2.69
1734 1765 8.581578 AGTTACACCATGTTTAATTTGTTAGGG 58.418 33.333 0.00 0.00 0.00 3.53
1735 1766 8.578151 GTTACACCATGTTTAATTTGTTAGGGA 58.422 33.333 0.00 0.00 0.00 4.20
1736 1767 6.988522 ACACCATGTTTAATTTGTTAGGGAC 58.011 36.000 0.00 0.00 0.00 4.46
1737 1768 6.780522 ACACCATGTTTAATTTGTTAGGGACT 59.219 34.615 0.00 0.00 46.37 3.85
1738 1769 7.289084 ACACCATGTTTAATTTGTTAGGGACTT 59.711 33.333 0.00 0.00 41.75 3.01
1739 1770 8.147704 CACCATGTTTAATTTGTTAGGGACTTT 58.852 33.333 0.00 0.00 41.75 2.66
1740 1771 8.710239 ACCATGTTTAATTTGTTAGGGACTTTT 58.290 29.630 0.00 0.00 41.75 2.27
1741 1772 9.554395 CCATGTTTAATTTGTTAGGGACTTTTT 57.446 29.630 0.00 0.00 41.75 1.94
1750 1781 9.807921 ATTTGTTAGGGACTTTTTCTAATCTCA 57.192 29.630 0.00 0.00 41.75 3.27
1751 1782 9.635404 TTTGTTAGGGACTTTTTCTAATCTCAA 57.365 29.630 0.00 0.00 41.75 3.02
1752 1783 8.617290 TGTTAGGGACTTTTTCTAATCTCAAC 57.383 34.615 0.00 0.00 41.75 3.18
1753 1784 8.215050 TGTTAGGGACTTTTTCTAATCTCAACA 58.785 33.333 0.00 0.00 41.75 3.33
1754 1785 8.504815 GTTAGGGACTTTTTCTAATCTCAACAC 58.495 37.037 0.00 0.00 41.75 3.32
1755 1786 6.601332 AGGGACTTTTTCTAATCTCAACACA 58.399 36.000 0.00 0.00 27.25 3.72
1756 1787 7.060421 AGGGACTTTTTCTAATCTCAACACAA 58.940 34.615 0.00 0.00 27.25 3.33
1757 1788 7.559897 AGGGACTTTTTCTAATCTCAACACAAA 59.440 33.333 0.00 0.00 27.25 2.83
1758 1789 8.194769 GGGACTTTTTCTAATCTCAACACAAAA 58.805 33.333 0.00 0.00 0.00 2.44
1759 1790 9.581099 GGACTTTTTCTAATCTCAACACAAAAA 57.419 29.630 0.00 0.00 0.00 1.94
1780 1811 6.635030 AAAAGTCTATGGAACCAAACACTC 57.365 37.500 0.00 0.00 0.00 3.51
1781 1812 4.287766 AGTCTATGGAACCAAACACTCC 57.712 45.455 0.00 0.00 0.00 3.85
1782 1813 3.009143 AGTCTATGGAACCAAACACTCCC 59.991 47.826 0.00 0.00 0.00 4.30
1783 1814 3.009143 GTCTATGGAACCAAACACTCCCT 59.991 47.826 0.00 0.00 0.00 4.20
1787 1818 3.558033 TGGAACCAAACACTCCCTTAAC 58.442 45.455 0.00 0.00 0.00 2.01
1848 1911 8.040727 TCAATTGCAGCGTAACTATATCCATAT 58.959 33.333 0.00 0.00 0.00 1.78
1865 1928 1.968704 TATGGAGCAGTCTCGATCGT 58.031 50.000 15.94 0.00 38.48 3.73
1952 2015 7.805542 CGTGAGGAGTATCATGAACTAGTATTG 59.194 40.741 0.00 0.00 38.28 1.90
1964 2027 9.764363 CATGAACTAGTATTGTGTGTATGGTAT 57.236 33.333 0.00 0.00 0.00 2.73
2013 2077 9.753674 AATCTATGATAAGAACTGTTTGGGAAA 57.246 29.630 0.00 0.00 0.00 3.13
2014 2078 8.561738 TCTATGATAAGAACTGTTTGGGAAAC 57.438 34.615 0.00 0.00 41.73 2.78
2015 2079 5.682943 TGATAAGAACTGTTTGGGAAACG 57.317 39.130 0.00 0.00 44.28 3.60
2016 2080 5.127491 TGATAAGAACTGTTTGGGAAACGT 58.873 37.500 0.00 0.00 44.28 3.99
2017 2081 6.289834 TGATAAGAACTGTTTGGGAAACGTA 58.710 36.000 0.00 0.00 44.28 3.57
2018 2082 6.425721 TGATAAGAACTGTTTGGGAAACGTAG 59.574 38.462 0.00 0.00 44.28 3.51
2019 2083 2.876550 AGAACTGTTTGGGAAACGTAGC 59.123 45.455 0.00 0.00 44.28 3.58
2020 2084 2.335316 ACTGTTTGGGAAACGTAGCA 57.665 45.000 0.00 0.00 44.28 3.49
2021 2085 2.218603 ACTGTTTGGGAAACGTAGCAG 58.781 47.619 0.00 0.00 44.28 4.24
2022 2086 2.158871 ACTGTTTGGGAAACGTAGCAGA 60.159 45.455 4.85 0.00 44.28 4.26
2023 2087 2.875933 CTGTTTGGGAAACGTAGCAGAA 59.124 45.455 0.00 0.00 44.28 3.02
2024 2088 3.280295 TGTTTGGGAAACGTAGCAGAAA 58.720 40.909 0.00 0.00 44.28 2.52
2025 2089 3.886505 TGTTTGGGAAACGTAGCAGAAAT 59.113 39.130 0.00 0.00 44.28 2.17
2026 2090 4.339814 TGTTTGGGAAACGTAGCAGAAATT 59.660 37.500 0.00 0.00 44.28 1.82
2027 2091 5.163499 TGTTTGGGAAACGTAGCAGAAATTT 60.163 36.000 0.00 0.00 44.28 1.82
2028 2092 6.039493 TGTTTGGGAAACGTAGCAGAAATTTA 59.961 34.615 0.00 0.00 44.28 1.40
2029 2093 6.636562 TTGGGAAACGTAGCAGAAATTTAA 57.363 33.333 0.00 0.00 0.00 1.52
2030 2094 6.636562 TGGGAAACGTAGCAGAAATTTAAA 57.363 33.333 0.00 0.00 0.00 1.52
2031 2095 7.040473 TGGGAAACGTAGCAGAAATTTAAAA 57.960 32.000 0.00 0.00 0.00 1.52
2032 2096 7.662897 TGGGAAACGTAGCAGAAATTTAAAAT 58.337 30.769 0.00 0.00 0.00 1.82
2033 2097 8.145122 TGGGAAACGTAGCAGAAATTTAAAATT 58.855 29.630 0.00 0.00 0.00 1.82
2034 2098 8.984764 GGGAAACGTAGCAGAAATTTAAAATTT 58.015 29.630 0.00 0.00 0.00 1.82
2038 2102 9.758651 AACGTAGCAGAAATTTAAAATTTTCCT 57.241 25.926 6.72 9.14 33.30 3.36
2052 2116 7.989416 AAAATTTTCCTACGTACCATCAAGA 57.011 32.000 0.00 0.00 0.00 3.02
2053 2117 8.575649 AAAATTTTCCTACGTACCATCAAGAT 57.424 30.769 0.00 0.00 0.00 2.40
2054 2118 7.787725 AATTTTCCTACGTACCATCAAGATC 57.212 36.000 0.00 0.00 0.00 2.75
2055 2119 6.540438 TTTTCCTACGTACCATCAAGATCT 57.460 37.500 0.00 0.00 0.00 2.75
2056 2120 7.649533 TTTTCCTACGTACCATCAAGATCTA 57.350 36.000 0.00 0.00 0.00 1.98
2057 2121 7.834881 TTTCCTACGTACCATCAAGATCTAT 57.165 36.000 0.00 0.00 0.00 1.98
2058 2122 7.450124 TTCCTACGTACCATCAAGATCTATC 57.550 40.000 0.00 0.00 0.00 2.08
2059 2123 6.780901 TCCTACGTACCATCAAGATCTATCT 58.219 40.000 0.00 0.00 39.22 1.98
2060 2124 7.914859 TCCTACGTACCATCAAGATCTATCTA 58.085 38.462 0.00 0.00 35.76 1.98
2061 2125 8.549731 TCCTACGTACCATCAAGATCTATCTAT 58.450 37.037 0.00 0.00 35.76 1.98
2062 2126 8.616942 CCTACGTACCATCAAGATCTATCTATG 58.383 40.741 0.00 0.00 35.76 2.23
2063 2127 7.397892 ACGTACCATCAAGATCTATCTATGG 57.602 40.000 15.67 15.67 43.73 2.74
2064 2128 7.175797 ACGTACCATCAAGATCTATCTATGGA 58.824 38.462 21.04 9.05 42.04 3.41
2065 2129 7.338196 ACGTACCATCAAGATCTATCTATGGAG 59.662 40.741 21.04 15.42 42.04 3.86
2066 2130 7.554476 CGTACCATCAAGATCTATCTATGGAGA 59.446 40.741 21.04 10.58 42.04 3.71
2067 2131 9.249053 GTACCATCAAGATCTATCTATGGAGAA 57.751 37.037 21.04 9.01 42.04 2.87
2068 2132 8.733092 ACCATCAAGATCTATCTATGGAGAAA 57.267 34.615 21.04 0.00 42.04 2.52
2069 2133 8.592809 ACCATCAAGATCTATCTATGGAGAAAC 58.407 37.037 21.04 0.00 42.04 2.78
2070 2134 8.040132 CCATCAAGATCTATCTATGGAGAAACC 58.960 40.741 13.31 0.00 42.04 3.27
2071 2135 8.591940 CATCAAGATCTATCTATGGAGAAACCA 58.408 37.037 0.00 0.00 44.28 3.67
2072 2136 8.187913 TCAAGATCTATCTATGGAGAAACCAG 57.812 38.462 0.00 0.00 43.76 4.00
2073 2137 6.873076 CAAGATCTATCTATGGAGAAACCAGC 59.127 42.308 0.00 0.00 43.76 4.85
2074 2138 6.556495 AAGATCTATCTATGGAGAAACCAGCA 59.444 38.462 0.00 0.00 43.76 4.41
2075 2139 7.071698 AAGATCTATCTATGGAGAAACCAGCAA 59.928 37.037 0.00 0.00 43.76 3.91
2079 2143 3.305709 TGGAGAAACCAGCAACGAG 57.694 52.632 0.00 0.00 44.64 4.18
2080 2144 0.250295 TGGAGAAACCAGCAACGAGG 60.250 55.000 0.00 0.00 44.64 4.63
2081 2145 0.955919 GGAGAAACCAGCAACGAGGG 60.956 60.000 0.00 0.00 38.79 4.30
2082 2146 0.955919 GAGAAACCAGCAACGAGGGG 60.956 60.000 0.00 0.00 0.00 4.79
2083 2147 1.072505 GAAACCAGCAACGAGGGGA 59.927 57.895 0.00 0.00 0.00 4.81
2084 2148 0.536460 GAAACCAGCAACGAGGGGAA 60.536 55.000 0.00 0.00 0.00 3.97
2085 2149 0.537371 AAACCAGCAACGAGGGGAAG 60.537 55.000 0.00 0.00 0.00 3.46
2086 2150 2.045926 CCAGCAACGAGGGGAAGG 60.046 66.667 0.00 0.00 0.00 3.46
2087 2151 2.592993 CCAGCAACGAGGGGAAGGA 61.593 63.158 0.00 0.00 0.00 3.36
2088 2152 1.078848 CAGCAACGAGGGGAAGGAG 60.079 63.158 0.00 0.00 0.00 3.69
2089 2153 1.229209 AGCAACGAGGGGAAGGAGA 60.229 57.895 0.00 0.00 0.00 3.71
2090 2154 1.219393 GCAACGAGGGGAAGGAGAG 59.781 63.158 0.00 0.00 0.00 3.20
2091 2155 1.545706 GCAACGAGGGGAAGGAGAGT 61.546 60.000 0.00 0.00 0.00 3.24
2092 2156 0.247736 CAACGAGGGGAAGGAGAGTG 59.752 60.000 0.00 0.00 0.00 3.51
2093 2157 1.545706 AACGAGGGGAAGGAGAGTGC 61.546 60.000 0.00 0.00 0.00 4.40
2094 2158 1.984570 CGAGGGGAAGGAGAGTGCA 60.985 63.158 0.00 0.00 0.00 4.57
2095 2159 1.333636 CGAGGGGAAGGAGAGTGCAT 61.334 60.000 0.00 0.00 0.00 3.96
2096 2160 0.467804 GAGGGGAAGGAGAGTGCATC 59.532 60.000 0.00 0.00 0.00 3.91
2097 2161 0.043940 AGGGGAAGGAGAGTGCATCT 59.956 55.000 0.00 0.00 42.61 2.90
2098 2162 1.292242 AGGGGAAGGAGAGTGCATCTA 59.708 52.381 0.00 0.00 38.84 1.98
2099 2163 1.414550 GGGGAAGGAGAGTGCATCTAC 59.585 57.143 0.00 0.00 38.84 2.59
2100 2164 2.111384 GGGAAGGAGAGTGCATCTACA 58.889 52.381 9.98 0.00 42.01 2.74
2101 2165 2.703007 GGGAAGGAGAGTGCATCTACAT 59.297 50.000 9.98 0.00 42.01 2.29
2102 2166 3.898123 GGGAAGGAGAGTGCATCTACATA 59.102 47.826 9.98 0.00 42.01 2.29
2103 2167 4.262249 GGGAAGGAGAGTGCATCTACATAC 60.262 50.000 9.98 0.82 42.01 2.39
2104 2168 4.262249 GGAAGGAGAGTGCATCTACATACC 60.262 50.000 9.98 6.83 42.01 2.73
2105 2169 3.235200 AGGAGAGTGCATCTACATACCC 58.765 50.000 9.98 2.71 42.01 3.69
2106 2170 3.116939 AGGAGAGTGCATCTACATACCCT 60.117 47.826 9.98 4.47 42.01 4.34
2107 2171 3.643792 GGAGAGTGCATCTACATACCCTT 59.356 47.826 0.00 0.00 38.94 3.95
2108 2172 4.502259 GGAGAGTGCATCTACATACCCTTG 60.502 50.000 0.00 0.00 38.94 3.61
2109 2173 4.033709 AGAGTGCATCTACATACCCTTGT 58.966 43.478 0.00 0.00 36.10 3.16
2110 2174 5.208890 AGAGTGCATCTACATACCCTTGTA 58.791 41.667 0.00 0.00 36.10 2.41
2111 2175 5.303078 AGAGTGCATCTACATACCCTTGTAG 59.697 44.000 5.47 5.47 46.85 2.74
2120 2184 5.392767 ACATACCCTTGTAGATCGCTATG 57.607 43.478 0.00 0.00 0.00 2.23
2121 2185 2.821991 ACCCTTGTAGATCGCTATGC 57.178 50.000 0.00 0.00 0.00 3.14
2147 2211 2.249844 GTTCAAGAGAACGGGGTTGA 57.750 50.000 0.00 0.00 44.11 3.18
2148 2212 2.567985 GTTCAAGAGAACGGGGTTGAA 58.432 47.619 0.00 0.00 44.11 2.69
2149 2213 2.543777 TCAAGAGAACGGGGTTGAAG 57.456 50.000 0.00 0.00 0.00 3.02
2150 2214 1.071699 TCAAGAGAACGGGGTTGAAGG 59.928 52.381 0.00 0.00 0.00 3.46
2151 2215 1.071699 CAAGAGAACGGGGTTGAAGGA 59.928 52.381 0.00 0.00 0.00 3.36
2152 2216 0.977395 AGAGAACGGGGTTGAAGGAG 59.023 55.000 0.00 0.00 0.00 3.69
2153 2217 0.685660 GAGAACGGGGTTGAAGGAGT 59.314 55.000 0.00 0.00 0.00 3.85
2154 2218 0.685660 AGAACGGGGTTGAAGGAGTC 59.314 55.000 0.00 0.00 0.00 3.36
2155 2219 0.669625 GAACGGGGTTGAAGGAGTCG 60.670 60.000 0.00 0.00 0.00 4.18
2156 2220 1.405272 AACGGGGTTGAAGGAGTCGT 61.405 55.000 0.00 0.00 0.00 4.34
2157 2221 0.540365 ACGGGGTTGAAGGAGTCGTA 60.540 55.000 0.00 0.00 0.00 3.43
2158 2222 0.108945 CGGGGTTGAAGGAGTCGTAC 60.109 60.000 0.00 0.00 0.00 3.67
2159 2223 1.264295 GGGGTTGAAGGAGTCGTACT 58.736 55.000 0.00 0.00 0.00 2.73
2160 2224 1.204231 GGGGTTGAAGGAGTCGTACTC 59.796 57.143 6.50 6.50 44.32 2.59
2161 2225 1.135460 GGGTTGAAGGAGTCGTACTCG 60.135 57.143 8.33 0.00 45.96 4.18
2162 2226 1.538950 GGTTGAAGGAGTCGTACTCGT 59.461 52.381 8.33 6.65 45.96 4.18
2163 2227 2.413897 GGTTGAAGGAGTCGTACTCGTC 60.414 54.545 9.54 9.15 45.96 4.20
2164 2228 1.073964 TGAAGGAGTCGTACTCGTCG 58.926 55.000 9.54 0.00 45.96 5.12
2165 2229 1.074752 GAAGGAGTCGTACTCGTCGT 58.925 55.000 9.54 0.00 45.96 4.34
2166 2230 0.795085 AAGGAGTCGTACTCGTCGTG 59.205 55.000 9.54 0.00 45.96 4.35
2167 2231 0.037882 AGGAGTCGTACTCGTCGTGA 60.038 55.000 0.56 0.00 45.96 4.35
2168 2232 1.005340 GGAGTCGTACTCGTCGTGAT 58.995 55.000 0.56 0.00 45.96 3.06
2169 2233 1.005137 GGAGTCGTACTCGTCGTGATC 60.005 57.143 0.56 0.00 45.96 2.92
2170 2234 1.005137 GAGTCGTACTCGTCGTGATCC 60.005 57.143 0.56 0.00 35.28 3.36
2171 2235 0.723414 GTCGTACTCGTCGTGATCCA 59.277 55.000 0.56 0.00 38.33 3.41
2172 2236 1.129251 GTCGTACTCGTCGTGATCCAA 59.871 52.381 0.56 0.00 38.33 3.53
2173 2237 1.805943 TCGTACTCGTCGTGATCCAAA 59.194 47.619 0.56 0.00 38.33 3.28
2174 2238 2.421073 TCGTACTCGTCGTGATCCAAAT 59.579 45.455 0.56 0.00 38.33 2.32
2175 2239 2.782192 CGTACTCGTCGTGATCCAAATC 59.218 50.000 0.56 0.00 0.00 2.17
2176 2240 3.729762 CGTACTCGTCGTGATCCAAATCA 60.730 47.826 0.56 0.00 39.63 2.57
2177 2241 7.861595 TCGTACTCGTCGTGATCCAAATCAC 62.862 48.000 8.20 8.20 45.52 3.06
2185 2249 3.475566 TGATCCAAATCACCGGAGATC 57.524 47.619 15.13 10.62 36.98 2.75
2186 2250 2.104792 TGATCCAAATCACCGGAGATCC 59.895 50.000 15.13 2.03 36.98 3.36
2187 2251 1.879575 TCCAAATCACCGGAGATCCT 58.120 50.000 15.13 2.86 0.00 3.24
2188 2252 3.040655 TCCAAATCACCGGAGATCCTA 57.959 47.619 15.13 0.00 0.00 2.94
2189 2253 2.965831 TCCAAATCACCGGAGATCCTAG 59.034 50.000 15.13 5.05 0.00 3.02
2190 2254 2.700897 CCAAATCACCGGAGATCCTAGT 59.299 50.000 15.13 0.00 0.00 2.57
2191 2255 3.493350 CCAAATCACCGGAGATCCTAGTG 60.493 52.174 15.13 10.95 0.00 2.74
2192 2256 1.333177 ATCACCGGAGATCCTAGTGC 58.667 55.000 9.46 0.00 0.00 4.40
2193 2257 0.755698 TCACCGGAGATCCTAGTGCC 60.756 60.000 9.46 0.00 0.00 5.01
2194 2258 1.828660 ACCGGAGATCCTAGTGCCG 60.829 63.158 9.46 0.00 41.53 5.69
2195 2259 1.528542 CCGGAGATCCTAGTGCCGA 60.529 63.158 0.00 0.00 44.43 5.54
2196 2260 1.107538 CCGGAGATCCTAGTGCCGAA 61.108 60.000 0.00 0.00 44.43 4.30
2197 2261 0.030908 CGGAGATCCTAGTGCCGAAC 59.969 60.000 0.00 0.00 44.43 3.95
2198 2262 0.030908 GGAGATCCTAGTGCCGAACG 59.969 60.000 0.00 0.00 0.00 3.95
2199 2263 0.030908 GAGATCCTAGTGCCGAACGG 59.969 60.000 9.00 9.00 38.57 4.44
2200 2264 0.395311 AGATCCTAGTGCCGAACGGA 60.395 55.000 17.63 0.00 37.50 4.69
2201 2265 0.248949 GATCCTAGTGCCGAACGGAC 60.249 60.000 17.63 11.59 37.50 4.79
2202 2266 2.001361 ATCCTAGTGCCGAACGGACG 62.001 60.000 17.63 0.00 37.50 4.79
2210 2274 4.052229 CGAACGGACGGCACCTCT 62.052 66.667 0.00 0.00 0.00 3.69
2211 2275 2.432628 GAACGGACGGCACCTCTG 60.433 66.667 0.00 0.00 0.00 3.35
2212 2276 4.681978 AACGGACGGCACCTCTGC 62.682 66.667 0.00 0.00 43.41 4.26
2215 2279 4.681978 GGACGGCACCTCTGCGTT 62.682 66.667 0.00 0.00 45.31 4.84
2216 2280 3.112709 GACGGCACCTCTGCGTTC 61.113 66.667 0.00 0.00 45.31 3.95
2217 2281 3.858868 GACGGCACCTCTGCGTTCA 62.859 63.158 0.00 0.00 45.31 3.18
2218 2282 2.664851 CGGCACCTCTGCGTTCAA 60.665 61.111 0.00 0.00 45.31 2.69
2219 2283 2.946762 GGCACCTCTGCGTTCAAC 59.053 61.111 0.00 0.00 45.31 3.18
2220 2284 1.891919 GGCACCTCTGCGTTCAACA 60.892 57.895 0.00 0.00 45.31 3.33
2221 2285 1.279840 GCACCTCTGCGTTCAACAC 59.720 57.895 0.00 0.00 32.44 3.32
2222 2286 1.436195 GCACCTCTGCGTTCAACACA 61.436 55.000 0.00 0.00 32.44 3.72
2223 2287 0.304705 CACCTCTGCGTTCAACACAC 59.695 55.000 0.00 0.00 0.00 3.82
2224 2288 1.151777 ACCTCTGCGTTCAACACACG 61.152 55.000 0.00 0.00 40.75 4.49
2225 2289 1.151777 CCTCTGCGTTCAACACACGT 61.152 55.000 0.00 0.00 39.92 4.49
2226 2290 1.483316 CTCTGCGTTCAACACACGTA 58.517 50.000 0.00 0.00 39.92 3.57
2227 2291 1.189446 CTCTGCGTTCAACACACGTAC 59.811 52.381 0.00 0.00 39.92 3.67
2228 2292 0.924777 CTGCGTTCAACACACGTACA 59.075 50.000 0.00 0.00 39.92 2.90
2229 2293 0.924777 TGCGTTCAACACACGTACAG 59.075 50.000 0.00 0.00 39.92 2.74
2230 2294 0.382636 GCGTTCAACACACGTACAGC 60.383 55.000 0.00 0.00 39.92 4.40
2231 2295 0.231279 CGTTCAACACACGTACAGCC 59.769 55.000 0.00 0.00 32.80 4.85
2232 2296 0.584876 GTTCAACACACGTACAGCCC 59.415 55.000 0.00 0.00 0.00 5.19
2233 2297 0.876777 TTCAACACACGTACAGCCCG 60.877 55.000 0.00 0.00 0.00 6.13
2234 2298 2.029964 AACACACGTACAGCCCGG 59.970 61.111 0.00 0.00 0.00 5.73
2235 2299 2.799452 AACACACGTACAGCCCGGT 61.799 57.895 0.00 0.00 0.00 5.28
2236 2300 2.736995 CACACGTACAGCCCGGTG 60.737 66.667 0.00 0.00 0.00 4.94
2237 2301 2.913578 ACACGTACAGCCCGGTGA 60.914 61.111 0.00 0.00 0.00 4.02
2238 2302 2.431942 CACGTACAGCCCGGTGAC 60.432 66.667 0.00 0.00 0.00 3.67
2250 2314 2.125106 GGTGACGTCTCCCATGCC 60.125 66.667 23.20 7.61 0.00 4.40
2251 2315 2.660064 GGTGACGTCTCCCATGCCT 61.660 63.158 23.20 0.00 0.00 4.75
2252 2316 1.296715 GTGACGTCTCCCATGCCTT 59.703 57.895 17.92 0.00 0.00 4.35
2253 2317 1.021390 GTGACGTCTCCCATGCCTTG 61.021 60.000 17.92 0.00 0.00 3.61
2254 2318 1.191489 TGACGTCTCCCATGCCTTGA 61.191 55.000 17.92 0.00 0.00 3.02
2255 2319 0.179000 GACGTCTCCCATGCCTTGAT 59.821 55.000 8.70 0.00 0.00 2.57
2256 2320 0.179000 ACGTCTCCCATGCCTTGATC 59.821 55.000 0.00 0.00 0.00 2.92
2257 2321 0.533755 CGTCTCCCATGCCTTGATCC 60.534 60.000 0.00 0.00 0.00 3.36
2258 2322 0.548031 GTCTCCCATGCCTTGATCCA 59.452 55.000 0.00 0.00 0.00 3.41
2259 2323 0.841961 TCTCCCATGCCTTGATCCAG 59.158 55.000 0.00 0.00 0.00 3.86
2260 2324 0.822532 CTCCCATGCCTTGATCCAGC 60.823 60.000 0.00 0.00 0.00 4.85
2261 2325 1.076559 CCCATGCCTTGATCCAGCA 60.077 57.895 4.16 4.16 41.50 4.41
2262 2326 0.685131 CCCATGCCTTGATCCAGCAA 60.685 55.000 5.62 0.00 40.46 3.91
2263 2327 0.744874 CCATGCCTTGATCCAGCAAG 59.255 55.000 5.62 0.00 43.74 4.01
2264 2328 1.683938 CCATGCCTTGATCCAGCAAGA 60.684 52.381 6.14 0.00 46.31 3.02
2265 2329 2.097036 CATGCCTTGATCCAGCAAGAA 58.903 47.619 6.14 0.00 46.31 2.52
2266 2330 1.830279 TGCCTTGATCCAGCAAGAAG 58.170 50.000 6.14 0.00 46.31 2.85
2267 2331 1.352017 TGCCTTGATCCAGCAAGAAGA 59.648 47.619 6.14 0.00 46.31 2.87
2268 2332 2.015587 GCCTTGATCCAGCAAGAAGAG 58.984 52.381 6.14 0.00 46.31 2.85
2269 2333 2.355513 GCCTTGATCCAGCAAGAAGAGA 60.356 50.000 6.14 0.00 46.31 3.10
2270 2334 3.533547 CCTTGATCCAGCAAGAAGAGAG 58.466 50.000 6.14 0.00 46.31 3.20
2271 2335 3.533547 CTTGATCCAGCAAGAAGAGAGG 58.466 50.000 0.00 0.00 46.31 3.69
2272 2336 1.836166 TGATCCAGCAAGAAGAGAGGG 59.164 52.381 0.00 0.00 0.00 4.30
2273 2337 2.114616 GATCCAGCAAGAAGAGAGGGA 58.885 52.381 0.00 0.00 0.00 4.20
2274 2338 1.566211 TCCAGCAAGAAGAGAGGGAG 58.434 55.000 0.00 0.00 0.00 4.30
2275 2339 1.077828 TCCAGCAAGAAGAGAGGGAGA 59.922 52.381 0.00 0.00 0.00 3.71
2276 2340 1.481772 CCAGCAAGAAGAGAGGGAGAG 59.518 57.143 0.00 0.00 0.00 3.20
2277 2341 1.481772 CAGCAAGAAGAGAGGGAGAGG 59.518 57.143 0.00 0.00 0.00 3.69
2278 2342 1.078656 AGCAAGAAGAGAGGGAGAGGT 59.921 52.381 0.00 0.00 0.00 3.85
2279 2343 1.905894 GCAAGAAGAGAGGGAGAGGTT 59.094 52.381 0.00 0.00 0.00 3.50
2280 2344 2.354604 GCAAGAAGAGAGGGAGAGGTTG 60.355 54.545 0.00 0.00 0.00 3.77
2281 2345 3.169099 CAAGAAGAGAGGGAGAGGTTGA 58.831 50.000 0.00 0.00 0.00 3.18
2282 2346 3.100207 AGAAGAGAGGGAGAGGTTGAG 57.900 52.381 0.00 0.00 0.00 3.02
2283 2347 2.107366 GAAGAGAGGGAGAGGTTGAGG 58.893 57.143 0.00 0.00 0.00 3.86
2284 2348 1.388174 AGAGAGGGAGAGGTTGAGGA 58.612 55.000 0.00 0.00 0.00 3.71
2285 2349 1.719378 AGAGAGGGAGAGGTTGAGGAA 59.281 52.381 0.00 0.00 0.00 3.36
2286 2350 2.112691 AGAGAGGGAGAGGTTGAGGAAA 59.887 50.000 0.00 0.00 0.00 3.13
2287 2351 2.907042 GAGAGGGAGAGGTTGAGGAAAA 59.093 50.000 0.00 0.00 0.00 2.29
2288 2352 2.640332 AGAGGGAGAGGTTGAGGAAAAC 59.360 50.000 0.00 0.00 0.00 2.43
2289 2353 2.640332 GAGGGAGAGGTTGAGGAAAACT 59.360 50.000 0.00 0.00 39.06 2.66
2290 2354 3.056832 AGGGAGAGGTTGAGGAAAACTT 58.943 45.455 0.00 0.00 35.31 2.66
2291 2355 3.073209 AGGGAGAGGTTGAGGAAAACTTC 59.927 47.826 0.00 0.00 35.31 3.01
2292 2356 3.181443 GGGAGAGGTTGAGGAAAACTTCA 60.181 47.826 2.65 0.00 35.31 3.02
2293 2357 4.507512 GGGAGAGGTTGAGGAAAACTTCAT 60.508 45.833 2.65 0.00 35.31 2.57
2294 2358 4.697828 GGAGAGGTTGAGGAAAACTTCATC 59.302 45.833 2.65 0.00 35.31 2.92
2295 2359 4.657013 AGAGGTTGAGGAAAACTTCATCC 58.343 43.478 0.00 0.00 39.59 3.51
2296 2360 4.104738 AGAGGTTGAGGAAAACTTCATCCA 59.895 41.667 0.00 0.00 39.59 3.41
2297 2361 4.401925 AGGTTGAGGAAAACTTCATCCAG 58.598 43.478 0.00 0.00 39.59 3.86
2298 2362 3.057245 GGTTGAGGAAAACTTCATCCAGC 60.057 47.826 0.00 0.00 39.59 4.85
2299 2363 3.507162 TGAGGAAAACTTCATCCAGCA 57.493 42.857 0.00 0.00 39.59 4.41
2300 2364 3.415212 TGAGGAAAACTTCATCCAGCAG 58.585 45.455 0.00 0.00 39.59 4.24
2301 2365 2.163211 GAGGAAAACTTCATCCAGCAGC 59.837 50.000 0.00 0.00 38.23 5.25
2302 2366 1.888512 GGAAAACTTCATCCAGCAGCA 59.111 47.619 0.00 0.00 35.71 4.41
2303 2367 2.094854 GGAAAACTTCATCCAGCAGCAG 60.095 50.000 0.00 0.00 35.71 4.24
2304 2368 0.886563 AAACTTCATCCAGCAGCAGC 59.113 50.000 0.00 0.00 42.56 5.25
2305 2369 0.251033 AACTTCATCCAGCAGCAGCA 60.251 50.000 3.17 0.00 45.49 4.41
2306 2370 0.959372 ACTTCATCCAGCAGCAGCAC 60.959 55.000 3.17 0.00 45.49 4.40
2307 2371 0.958876 CTTCATCCAGCAGCAGCACA 60.959 55.000 3.17 0.00 45.49 4.57
2308 2372 0.537828 TTCATCCAGCAGCAGCACAA 60.538 50.000 3.17 0.00 45.49 3.33
2309 2373 1.211969 CATCCAGCAGCAGCACAAC 59.788 57.895 3.17 0.00 45.49 3.32
2310 2374 2.330372 ATCCAGCAGCAGCACAACG 61.330 57.895 3.17 0.00 45.49 4.10
2311 2375 4.034258 CCAGCAGCAGCACAACGG 62.034 66.667 3.17 0.00 45.49 4.44
2312 2376 4.695231 CAGCAGCAGCACAACGGC 62.695 66.667 3.17 0.00 45.49 5.68
2315 2379 4.671549 CAGCAGCACAACGGCGTG 62.672 66.667 15.70 10.75 45.09 5.34
2321 2385 3.947841 CACAACGGCGTGGTGGTG 61.948 66.667 34.23 24.43 34.13 4.17
2329 2393 3.238497 CGTGGTGGTGGTGGAGGA 61.238 66.667 0.00 0.00 0.00 3.71
2330 2394 2.750350 GTGGTGGTGGTGGAGGAG 59.250 66.667 0.00 0.00 0.00 3.69
2331 2395 3.249189 TGGTGGTGGTGGAGGAGC 61.249 66.667 0.00 0.00 0.00 4.70
2332 2396 4.394712 GGTGGTGGTGGAGGAGCG 62.395 72.222 0.00 0.00 0.00 5.03
2333 2397 3.626924 GTGGTGGTGGAGGAGCGT 61.627 66.667 0.00 0.00 0.00 5.07
2334 2398 3.625897 TGGTGGTGGAGGAGCGTG 61.626 66.667 0.00 0.00 0.00 5.34
2335 2399 4.394712 GGTGGTGGAGGAGCGTGG 62.395 72.222 0.00 0.00 0.00 4.94
2336 2400 3.626924 GTGGTGGAGGAGCGTGGT 61.627 66.667 0.00 0.00 0.00 4.16
2337 2401 2.118732 TGGTGGAGGAGCGTGGTA 59.881 61.111 0.00 0.00 0.00 3.25
2338 2402 2.280552 TGGTGGAGGAGCGTGGTAC 61.281 63.158 0.00 0.00 0.00 3.34
2339 2403 1.982938 GGTGGAGGAGCGTGGTACT 60.983 63.158 0.00 0.00 0.00 2.73
2340 2404 1.511768 GTGGAGGAGCGTGGTACTC 59.488 63.158 2.62 2.62 0.00 2.59
2347 2411 0.739561 GAGCGTGGTACTCCAGTAGG 59.260 60.000 0.00 0.00 45.24 3.18
2348 2412 0.683504 AGCGTGGTACTCCAGTAGGG 60.684 60.000 0.00 0.00 45.24 3.53
2349 2413 1.814527 CGTGGTACTCCAGTAGGGC 59.185 63.158 0.00 0.00 45.24 5.19
2350 2414 0.683504 CGTGGTACTCCAGTAGGGCT 60.684 60.000 0.00 0.00 45.24 5.19
2351 2415 1.569653 GTGGTACTCCAGTAGGGCTT 58.430 55.000 0.00 0.00 45.24 4.35
2352 2416 1.481363 GTGGTACTCCAGTAGGGCTTC 59.519 57.143 0.00 0.00 45.24 3.86
2353 2417 0.745468 GGTACTCCAGTAGGGCTTCG 59.255 60.000 0.00 0.00 36.21 3.79
2354 2418 0.102663 GTACTCCAGTAGGGCTTCGC 59.897 60.000 0.00 0.00 36.21 4.70
2366 2430 3.659092 CTTCGCCAAGCACCGCAA 61.659 61.111 0.00 0.00 0.00 4.85
2367 2431 3.599792 CTTCGCCAAGCACCGCAAG 62.600 63.158 0.00 0.00 0.00 4.01
2368 2432 4.617520 TCGCCAAGCACCGCAAGA 62.618 61.111 0.00 0.00 43.02 3.02
2369 2433 3.659092 CGCCAAGCACCGCAAGAA 61.659 61.111 0.00 0.00 43.02 2.52
2370 2434 2.727544 GCCAAGCACCGCAAGAAA 59.272 55.556 0.00 0.00 43.02 2.52
2371 2435 1.661509 GCCAAGCACCGCAAGAAAC 60.662 57.895 0.00 0.00 43.02 2.78
2372 2436 1.370414 CCAAGCACCGCAAGAAACG 60.370 57.895 0.00 0.00 43.02 3.60
2373 2437 1.646540 CAAGCACCGCAAGAAACGA 59.353 52.632 0.00 0.00 43.02 3.85
2374 2438 0.384725 CAAGCACCGCAAGAAACGAG 60.385 55.000 0.00 0.00 43.02 4.18
2375 2439 1.507141 AAGCACCGCAAGAAACGAGG 61.507 55.000 0.00 0.00 43.02 4.63
2376 2440 1.959226 GCACCGCAAGAAACGAGGA 60.959 57.895 0.00 0.00 43.02 3.71
2377 2441 1.901650 GCACCGCAAGAAACGAGGAG 61.902 60.000 0.00 0.00 43.02 3.69
2378 2442 1.004918 ACCGCAAGAAACGAGGAGG 60.005 57.895 0.00 0.00 43.02 4.30
2379 2443 1.292223 CCGCAAGAAACGAGGAGGA 59.708 57.895 0.00 0.00 43.02 3.71
2380 2444 0.737715 CCGCAAGAAACGAGGAGGAG 60.738 60.000 0.00 0.00 43.02 3.69
2381 2445 0.243907 CGCAAGAAACGAGGAGGAGA 59.756 55.000 0.00 0.00 43.02 3.71
2382 2446 1.734047 CGCAAGAAACGAGGAGGAGAG 60.734 57.143 0.00 0.00 43.02 3.20
2383 2447 1.546476 GCAAGAAACGAGGAGGAGAGA 59.454 52.381 0.00 0.00 0.00 3.10
2384 2448 2.416701 GCAAGAAACGAGGAGGAGAGAG 60.417 54.545 0.00 0.00 0.00 3.20
2385 2449 2.137810 AGAAACGAGGAGGAGAGAGG 57.862 55.000 0.00 0.00 0.00 3.69
2386 2450 1.356398 AGAAACGAGGAGGAGAGAGGT 59.644 52.381 0.00 0.00 0.00 3.85
2387 2451 2.577105 AGAAACGAGGAGGAGAGAGGTA 59.423 50.000 0.00 0.00 0.00 3.08
2388 2452 2.721425 AACGAGGAGGAGAGAGGTAG 57.279 55.000 0.00 0.00 0.00 3.18
2389 2453 0.841289 ACGAGGAGGAGAGAGGTAGG 59.159 60.000 0.00 0.00 0.00 3.18
2390 2454 0.109723 CGAGGAGGAGAGAGGTAGGG 59.890 65.000 0.00 0.00 0.00 3.53
2391 2455 0.178973 GAGGAGGAGAGAGGTAGGGC 60.179 65.000 0.00 0.00 0.00 5.19
2392 2456 1.152419 GGAGGAGAGAGGTAGGGCC 60.152 68.421 0.00 0.00 37.58 5.80
2393 2457 1.529713 GAGGAGAGAGGTAGGGCCG 60.530 68.421 0.00 0.00 43.70 6.13
2394 2458 3.228017 GGAGAGAGGTAGGGCCGC 61.228 72.222 0.00 0.00 43.70 6.53
2395 2459 3.597728 GAGAGAGGTAGGGCCGCG 61.598 72.222 0.00 0.00 42.28 6.46
2407 2471 4.537433 GCCGCGCCAGGAAGAGAT 62.537 66.667 0.00 0.00 0.00 2.75
2408 2472 2.279784 CCGCGCCAGGAAGAGATC 60.280 66.667 0.00 0.00 0.00 2.75
2409 2473 2.496341 CGCGCCAGGAAGAGATCA 59.504 61.111 0.00 0.00 0.00 2.92
2410 2474 1.153568 CGCGCCAGGAAGAGATCAA 60.154 57.895 0.00 0.00 0.00 2.57
2411 2475 0.740868 CGCGCCAGGAAGAGATCAAA 60.741 55.000 0.00 0.00 0.00 2.69
2412 2476 1.673168 GCGCCAGGAAGAGATCAAAT 58.327 50.000 0.00 0.00 0.00 2.32
2413 2477 1.601430 GCGCCAGGAAGAGATCAAATC 59.399 52.381 0.00 0.00 0.00 2.17
2414 2478 1.863454 CGCCAGGAAGAGATCAAATCG 59.137 52.381 0.00 0.00 0.00 3.34
2415 2479 2.739932 CGCCAGGAAGAGATCAAATCGT 60.740 50.000 0.00 0.00 0.00 3.73
2416 2480 2.611292 GCCAGGAAGAGATCAAATCGTG 59.389 50.000 0.00 1.77 0.00 4.35
2417 2481 3.866651 CCAGGAAGAGATCAAATCGTGT 58.133 45.455 0.00 0.00 0.00 4.49
2418 2482 3.620374 CCAGGAAGAGATCAAATCGTGTG 59.380 47.826 0.00 0.00 0.00 3.82
2419 2483 4.248859 CAGGAAGAGATCAAATCGTGTGT 58.751 43.478 0.00 0.00 0.00 3.72
2420 2484 4.328440 CAGGAAGAGATCAAATCGTGTGTC 59.672 45.833 0.00 0.00 0.00 3.67
2421 2485 4.221703 AGGAAGAGATCAAATCGTGTGTCT 59.778 41.667 0.00 0.00 0.00 3.41
2422 2486 4.932200 GGAAGAGATCAAATCGTGTGTCTT 59.068 41.667 0.00 0.00 0.00 3.01
2423 2487 5.163913 GGAAGAGATCAAATCGTGTGTCTTG 60.164 44.000 0.00 0.00 0.00 3.02
2424 2488 4.248859 AGAGATCAAATCGTGTGTCTTGG 58.751 43.478 0.00 0.00 0.00 3.61
2425 2489 4.021104 AGAGATCAAATCGTGTGTCTTGGA 60.021 41.667 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.402628 TTCAGACTGCCTACTTCAACC 57.597 47.619 0.00 0.00 0.00 3.77
66 67 4.872691 CGATGATTTTCAGACTGCCTACTT 59.127 41.667 0.00 0.00 0.00 2.24
78 80 2.682856 GGCCTTAGCACGATGATTTTCA 59.317 45.455 0.00 0.00 42.56 2.69
83 85 1.344953 TGGGGCCTTAGCACGATGAT 61.345 55.000 0.84 0.00 46.55 2.45
86 88 0.687354 CTATGGGGCCTTAGCACGAT 59.313 55.000 0.84 0.00 46.55 3.73
108 110 6.200286 CGATAGTTGTTGTTCTAGTGTGTTGT 59.800 38.462 0.00 0.00 0.00 3.32
113 115 5.049198 TCGTCGATAGTTGTTGTTCTAGTGT 60.049 40.000 0.00 0.00 37.40 3.55
117 119 6.185852 TCATCGTCGATAGTTGTTGTTCTA 57.814 37.500 7.56 0.00 37.40 2.10
134 136 5.473846 TCCGATATAAGCTTCTCTTCATCGT 59.526 40.000 0.00 0.00 42.37 3.73
152 155 4.653801 TCTTCAGGTTGGATCATTCCGATA 59.346 41.667 0.00 0.00 45.89 2.92
209 223 0.531090 CGGTCGGTGGTTGTCTTTGA 60.531 55.000 0.00 0.00 0.00 2.69
236 250 4.137543 AGGTGTGTCTTTTGTGAATCTCC 58.862 43.478 0.00 0.00 0.00 3.71
242 256 2.026729 TGTGGAGGTGTGTCTTTTGTGA 60.027 45.455 0.00 0.00 0.00 3.58
246 260 1.663695 CGTGTGGAGGTGTGTCTTTT 58.336 50.000 0.00 0.00 0.00 2.27
248 262 1.227556 GCGTGTGGAGGTGTGTCTT 60.228 57.895 0.00 0.00 0.00 3.01
279 293 1.291272 GTCCCGGTGGTGTGTCTAC 59.709 63.158 0.00 0.00 0.00 2.59
299 313 0.470268 GATTCTCCCCGCCTAGTCCT 60.470 60.000 0.00 0.00 0.00 3.85
302 316 2.769602 TAAGATTCTCCCCGCCTAGT 57.230 50.000 0.00 0.00 0.00 2.57
324 338 0.740868 CGGCGGCTTCTTGAAGATGA 60.741 55.000 13.87 0.00 0.00 2.92
373 387 5.506649 GGTGCTTATTCAAGTTTTGTCGGAA 60.507 40.000 0.00 0.00 34.00 4.30
377 391 8.865590 TTTTAGGTGCTTATTCAAGTTTTGTC 57.134 30.769 0.00 0.00 34.00 3.18
410 425 4.203618 GCCTTTACTGGCGAGACC 57.796 61.111 1.44 0.00 43.74 3.85
494 511 2.667348 GGTTTCTCCCTCCTGACGA 58.333 57.895 0.00 0.00 0.00 4.20
505 522 0.466124 ATCTGCGGCTAGGGTTTCTC 59.534 55.000 0.00 0.00 0.00 2.87
537 554 0.604780 GAAGGAGCAACAGAGCAGCA 60.605 55.000 0.00 0.00 36.85 4.41
548 565 3.031417 GCCCTAAGCGGAAGGAGCA 62.031 63.158 3.85 0.00 36.08 4.26
705 725 0.251916 GGACGGAATGGACACCATCA 59.748 55.000 3.69 0.00 44.40 3.07
717 737 0.037590 CACAAGGAATGGGGACGGAA 59.962 55.000 0.00 0.00 0.00 4.30
718 738 1.682849 CACAAGGAATGGGGACGGA 59.317 57.895 0.00 0.00 0.00 4.69
719 739 2.046285 GCACAAGGAATGGGGACGG 61.046 63.158 0.00 0.00 30.96 4.79
720 740 2.046285 GGCACAAGGAATGGGGACG 61.046 63.158 0.00 0.00 30.96 4.79
721 741 2.046285 CGGCACAAGGAATGGGGAC 61.046 63.158 0.00 0.00 30.96 4.46
753 773 1.603634 ATATTCCCTGGGGTTCCGTT 58.396 50.000 14.00 0.00 36.47 4.44
754 774 1.603634 AATATTCCCTGGGGTTCCGT 58.396 50.000 14.00 0.00 36.47 4.69
755 775 3.751518 CTTAATATTCCCTGGGGTTCCG 58.248 50.000 14.00 0.00 36.47 4.30
756 776 3.497332 GCTTAATATTCCCTGGGGTTCC 58.503 50.000 14.00 0.00 36.47 3.62
757 777 3.146847 CGCTTAATATTCCCTGGGGTTC 58.853 50.000 14.00 0.00 36.47 3.62
895 918 4.221924 TGGTATATATGCATGTGGTAGCGT 59.778 41.667 10.16 0.00 0.00 5.07
907 930 6.810911 CATCTGAGGTAGGTGGTATATATGC 58.189 44.000 0.00 0.00 33.68 3.14
1005 1028 1.443872 CGACGGCTTCTTGCGTACT 60.444 57.895 0.00 0.00 44.05 2.73
1072 1095 2.659610 GCCGCTGTTGTCTCCTCT 59.340 61.111 0.00 0.00 0.00 3.69
1115 1138 1.810441 CTTCTGCTGCTGCTCTCGG 60.810 63.158 17.00 2.61 40.48 4.63
1116 1139 2.454464 GCTTCTGCTGCTGCTCTCG 61.454 63.158 17.00 4.43 40.48 4.04
1567 1596 6.391537 AGAATCTTACTCAACCGAAAGAGAC 58.608 40.000 0.00 0.00 35.83 3.36
1593 1624 7.264294 AGAGAATCAAACTCCACCTAAATCT 57.736 36.000 0.00 0.00 37.82 2.40
1598 1629 5.657302 GGACTAGAGAATCAAACTCCACCTA 59.343 44.000 0.00 0.00 37.82 3.08
1599 1630 4.468153 GGACTAGAGAATCAAACTCCACCT 59.532 45.833 0.00 0.00 37.82 4.00
1600 1631 4.468153 AGGACTAGAGAATCAAACTCCACC 59.532 45.833 0.00 0.00 37.82 4.61
1601 1632 5.669164 AGGACTAGAGAATCAAACTCCAC 57.331 43.478 0.00 0.00 37.82 4.02
1602 1633 7.792364 TTTAGGACTAGAGAATCAAACTCCA 57.208 36.000 0.00 0.00 37.82 3.86
1603 1634 8.315482 AGTTTTAGGACTAGAGAATCAAACTCC 58.685 37.037 0.00 0.00 37.82 3.85
1604 1635 9.713713 AAGTTTTAGGACTAGAGAATCAAACTC 57.286 33.333 0.00 0.00 37.82 3.01
1614 1645 9.642327 GGACTAGAAAAAGTTTTAGGACTAGAG 57.358 37.037 23.06 11.68 31.07 2.43
1615 1646 9.377238 AGGACTAGAAAAAGTTTTAGGACTAGA 57.623 33.333 23.06 4.44 31.07 2.43
1616 1647 9.999660 AAGGACTAGAAAAAGTTTTAGGACTAG 57.000 33.333 18.90 18.90 32.00 2.57
1618 1649 9.999660 CTAAGGACTAGAAAAAGTTTTAGGACT 57.000 33.333 0.24 2.61 30.81 3.85
1619 1650 9.217278 CCTAAGGACTAGAAAAAGTTTTAGGAC 57.783 37.037 15.84 0.00 42.51 3.85
1620 1651 9.162733 TCCTAAGGACTAGAAAAAGTTTTAGGA 57.837 33.333 17.77 17.77 44.04 2.94
1654 1685 4.786425 AGCACCTTCTTGAGAGTCTTTTT 58.214 39.130 0.00 0.00 0.00 1.94
1655 1686 4.429854 AGCACCTTCTTGAGAGTCTTTT 57.570 40.909 0.00 0.00 0.00 2.27
1656 1687 4.384940 GAAGCACCTTCTTGAGAGTCTTT 58.615 43.478 0.00 0.00 37.49 2.52
1657 1688 4.001618 GAAGCACCTTCTTGAGAGTCTT 57.998 45.455 0.00 0.00 37.49 3.01
1658 1689 3.676291 GAAGCACCTTCTTGAGAGTCT 57.324 47.619 0.00 0.00 37.49 3.24
1668 1699 5.122554 GCTAAAAGTCCTTAGAAGCACCTTC 59.877 44.000 0.00 0.00 40.45 3.46
1669 1700 5.004448 GCTAAAAGTCCTTAGAAGCACCTT 58.996 41.667 0.00 0.00 31.59 3.50
1670 1701 4.041691 TGCTAAAAGTCCTTAGAAGCACCT 59.958 41.667 6.73 0.00 31.59 4.00
1671 1702 4.324267 TGCTAAAAGTCCTTAGAAGCACC 58.676 43.478 6.73 0.00 31.59 5.01
1672 1703 5.941948 TTGCTAAAAGTCCTTAGAAGCAC 57.058 39.130 9.21 0.00 31.59 4.40
1673 1704 6.952773 TTTTGCTAAAAGTCCTTAGAAGCA 57.047 33.333 6.73 6.73 31.59 3.91
1674 1705 7.859613 CTTTTTGCTAAAAGTCCTTAGAAGC 57.140 36.000 20.79 0.00 43.34 3.86
1707 1738 9.974980 CCTAACAAATTAAACATGGTGTAACTT 57.025 29.630 0.00 0.00 36.74 2.66
1708 1739 8.581578 CCCTAACAAATTAAACATGGTGTAACT 58.418 33.333 0.00 0.00 36.74 2.24
1709 1740 8.578151 TCCCTAACAAATTAAACATGGTGTAAC 58.422 33.333 0.00 0.00 0.00 2.50
1710 1741 8.578151 GTCCCTAACAAATTAAACATGGTGTAA 58.422 33.333 0.00 0.00 0.00 2.41
1711 1742 7.945664 AGTCCCTAACAAATTAAACATGGTGTA 59.054 33.333 0.00 0.00 0.00 2.90
1712 1743 6.780522 AGTCCCTAACAAATTAAACATGGTGT 59.219 34.615 0.00 0.00 0.00 4.16
1713 1744 7.227049 AGTCCCTAACAAATTAAACATGGTG 57.773 36.000 0.00 0.00 0.00 4.17
1714 1745 7.849322 AAGTCCCTAACAAATTAAACATGGT 57.151 32.000 0.00 0.00 0.00 3.55
1715 1746 9.554395 AAAAAGTCCCTAACAAATTAAACATGG 57.446 29.630 0.00 0.00 0.00 3.66
1724 1755 9.807921 TGAGATTAGAAAAAGTCCCTAACAAAT 57.192 29.630 0.00 0.00 0.00 2.32
1725 1756 9.635404 TTGAGATTAGAAAAAGTCCCTAACAAA 57.365 29.630 0.00 0.00 0.00 2.83
1726 1757 9.063615 GTTGAGATTAGAAAAAGTCCCTAACAA 57.936 33.333 0.00 0.00 0.00 2.83
1727 1758 8.215050 TGTTGAGATTAGAAAAAGTCCCTAACA 58.785 33.333 0.00 0.00 0.00 2.41
1728 1759 8.504815 GTGTTGAGATTAGAAAAAGTCCCTAAC 58.495 37.037 0.00 0.00 0.00 2.34
1729 1760 8.215050 TGTGTTGAGATTAGAAAAAGTCCCTAA 58.785 33.333 0.00 0.00 0.00 2.69
1730 1761 7.741785 TGTGTTGAGATTAGAAAAAGTCCCTA 58.258 34.615 0.00 0.00 0.00 3.53
1731 1762 6.601332 TGTGTTGAGATTAGAAAAAGTCCCT 58.399 36.000 0.00 0.00 0.00 4.20
1732 1763 6.877611 TGTGTTGAGATTAGAAAAAGTCCC 57.122 37.500 0.00 0.00 0.00 4.46
1733 1764 9.581099 TTTTTGTGTTGAGATTAGAAAAAGTCC 57.419 29.630 0.00 0.00 0.00 3.85
1756 1787 6.040504 GGAGTGTTTGGTTCCATAGACTTTTT 59.959 38.462 11.74 0.00 0.00 1.94
1757 1788 5.535030 GGAGTGTTTGGTTCCATAGACTTTT 59.465 40.000 11.74 0.00 0.00 2.27
1758 1789 5.070685 GGAGTGTTTGGTTCCATAGACTTT 58.929 41.667 11.74 0.00 0.00 2.66
1759 1790 4.506802 GGGAGTGTTTGGTTCCATAGACTT 60.507 45.833 11.74 0.00 32.50 3.01
1760 1791 3.009143 GGGAGTGTTTGGTTCCATAGACT 59.991 47.826 10.66 10.66 32.50 3.24
1761 1792 3.009143 AGGGAGTGTTTGGTTCCATAGAC 59.991 47.826 2.42 2.42 32.50 2.59
1762 1793 3.256704 AGGGAGTGTTTGGTTCCATAGA 58.743 45.455 0.00 0.00 32.50 1.98
1763 1794 3.721087 AGGGAGTGTTTGGTTCCATAG 57.279 47.619 0.00 0.00 32.50 2.23
1764 1795 5.073965 AGTTAAGGGAGTGTTTGGTTCCATA 59.926 40.000 0.00 0.00 32.50 2.74
1765 1796 4.141018 AGTTAAGGGAGTGTTTGGTTCCAT 60.141 41.667 0.00 0.00 32.50 3.41
1766 1797 3.203487 AGTTAAGGGAGTGTTTGGTTCCA 59.797 43.478 0.00 0.00 32.50 3.53
1767 1798 3.568430 CAGTTAAGGGAGTGTTTGGTTCC 59.432 47.826 0.00 0.00 0.00 3.62
1768 1799 4.204799 ACAGTTAAGGGAGTGTTTGGTTC 58.795 43.478 0.00 0.00 29.00 3.62
1769 1800 4.245251 ACAGTTAAGGGAGTGTTTGGTT 57.755 40.909 0.00 0.00 29.00 3.67
1770 1801 3.945640 ACAGTTAAGGGAGTGTTTGGT 57.054 42.857 0.00 0.00 29.00 3.67
1771 1802 3.250040 CGAACAGTTAAGGGAGTGTTTGG 59.750 47.826 5.35 0.00 41.84 3.28
1772 1803 3.875134 ACGAACAGTTAAGGGAGTGTTTG 59.125 43.478 9.99 9.99 44.51 2.93
1773 1804 3.875134 CACGAACAGTTAAGGGAGTGTTT 59.125 43.478 0.00 0.00 41.84 2.83
1774 1805 3.463944 CACGAACAGTTAAGGGAGTGTT 58.536 45.455 0.00 0.00 43.82 3.32
1775 1806 2.805657 GCACGAACAGTTAAGGGAGTGT 60.806 50.000 0.00 0.00 34.75 3.55
1776 1807 1.798813 GCACGAACAGTTAAGGGAGTG 59.201 52.381 0.00 0.00 0.00 3.51
1777 1808 1.604693 CGCACGAACAGTTAAGGGAGT 60.605 52.381 0.00 0.00 0.00 3.85
1778 1809 1.068474 CGCACGAACAGTTAAGGGAG 58.932 55.000 0.00 0.00 0.00 4.30
1779 1810 0.390124 ACGCACGAACAGTTAAGGGA 59.610 50.000 0.00 0.00 0.00 4.20
1780 1811 1.990563 CTACGCACGAACAGTTAAGGG 59.009 52.381 0.00 0.00 0.00 3.95
1781 1812 2.937591 TCTACGCACGAACAGTTAAGG 58.062 47.619 0.00 0.00 0.00 2.69
1782 1813 4.498323 GGTATCTACGCACGAACAGTTAAG 59.502 45.833 0.00 0.00 0.00 1.85
1783 1814 4.082841 TGGTATCTACGCACGAACAGTTAA 60.083 41.667 0.00 0.00 0.00 2.01
1787 1818 2.096980 TCTGGTATCTACGCACGAACAG 59.903 50.000 0.00 0.00 0.00 3.16
1848 1911 0.888619 AAACGATCGAGACTGCTCCA 59.111 50.000 24.34 0.00 37.91 3.86
2004 2068 3.974871 TTTCTGCTACGTTTCCCAAAC 57.025 42.857 0.00 0.00 38.02 2.93
2005 2069 5.523438 AAATTTCTGCTACGTTTCCCAAA 57.477 34.783 0.00 0.00 0.00 3.28
2006 2070 6.636562 TTAAATTTCTGCTACGTTTCCCAA 57.363 33.333 0.00 0.00 0.00 4.12
2007 2071 6.636562 TTTAAATTTCTGCTACGTTTCCCA 57.363 33.333 0.00 0.00 0.00 4.37
2008 2072 8.528917 AATTTTAAATTTCTGCTACGTTTCCC 57.471 30.769 0.00 0.00 0.00 3.97
2012 2076 9.758651 AGGAAAATTTTAAATTTCTGCTACGTT 57.241 25.926 14.90 0.00 36.15 3.99
2026 2090 9.504708 TCTTGATGGTACGTAGGAAAATTTTAA 57.495 29.630 2.75 0.00 0.00 1.52
2027 2091 9.675464 ATCTTGATGGTACGTAGGAAAATTTTA 57.325 29.630 2.75 0.00 0.00 1.52
2028 2092 7.989416 TCTTGATGGTACGTAGGAAAATTTT 57.011 32.000 2.28 2.28 0.00 1.82
2029 2093 8.047310 AGATCTTGATGGTACGTAGGAAAATTT 58.953 33.333 0.00 0.00 0.00 1.82
2030 2094 7.565680 AGATCTTGATGGTACGTAGGAAAATT 58.434 34.615 0.00 0.00 0.00 1.82
2031 2095 7.125792 AGATCTTGATGGTACGTAGGAAAAT 57.874 36.000 0.00 0.00 0.00 1.82
2032 2096 6.540438 AGATCTTGATGGTACGTAGGAAAA 57.460 37.500 0.00 0.00 0.00 2.29
2033 2097 7.724506 AGATAGATCTTGATGGTACGTAGGAAA 59.275 37.037 0.00 0.00 31.97 3.13
2034 2098 7.232188 AGATAGATCTTGATGGTACGTAGGAA 58.768 38.462 0.00 0.00 31.97 3.36
2035 2099 6.780901 AGATAGATCTTGATGGTACGTAGGA 58.219 40.000 0.00 0.00 31.97 2.94
2036 2100 8.616942 CATAGATAGATCTTGATGGTACGTAGG 58.383 40.741 0.00 0.00 38.32 3.18
2037 2101 8.616942 CCATAGATAGATCTTGATGGTACGTAG 58.383 40.741 0.00 0.00 37.86 3.51
2038 2102 8.326529 TCCATAGATAGATCTTGATGGTACGTA 58.673 37.037 16.05 0.00 41.03 3.57
2039 2103 7.175797 TCCATAGATAGATCTTGATGGTACGT 58.824 38.462 16.05 0.00 41.03 3.57
2040 2104 7.554476 TCTCCATAGATAGATCTTGATGGTACG 59.446 40.741 16.05 9.48 41.03 3.67
2041 2105 8.815565 TCTCCATAGATAGATCTTGATGGTAC 57.184 38.462 16.05 0.00 41.03 3.34
2042 2106 9.828691 TTTCTCCATAGATAGATCTTGATGGTA 57.171 33.333 16.05 7.56 41.03 3.25
2043 2107 8.592809 GTTTCTCCATAGATAGATCTTGATGGT 58.407 37.037 16.05 0.00 41.03 3.55
2044 2108 8.040132 GGTTTCTCCATAGATAGATCTTGATGG 58.960 40.741 0.00 12.44 41.35 3.51
2045 2109 8.591940 TGGTTTCTCCATAGATAGATCTTGATG 58.408 37.037 0.00 0.00 41.93 3.07
2046 2110 8.733092 TGGTTTCTCCATAGATAGATCTTGAT 57.267 34.615 0.00 0.00 41.93 2.57
2047 2111 7.256119 GCTGGTTTCTCCATAGATAGATCTTGA 60.256 40.741 0.00 0.00 46.12 3.02
2048 2112 6.873076 GCTGGTTTCTCCATAGATAGATCTTG 59.127 42.308 0.00 0.00 46.12 3.02
2049 2113 6.556495 TGCTGGTTTCTCCATAGATAGATCTT 59.444 38.462 0.00 0.00 46.12 2.40
2050 2114 6.080682 TGCTGGTTTCTCCATAGATAGATCT 58.919 40.000 0.00 0.00 46.12 2.75
2051 2115 6.352016 TGCTGGTTTCTCCATAGATAGATC 57.648 41.667 0.00 0.00 46.12 2.75
2052 2116 6.529220 GTTGCTGGTTTCTCCATAGATAGAT 58.471 40.000 0.00 0.00 46.12 1.98
2053 2117 5.451937 CGTTGCTGGTTTCTCCATAGATAGA 60.452 44.000 0.00 0.00 46.12 1.98
2054 2118 4.747108 CGTTGCTGGTTTCTCCATAGATAG 59.253 45.833 0.00 0.00 46.12 2.08
2055 2119 4.404394 TCGTTGCTGGTTTCTCCATAGATA 59.596 41.667 0.00 0.00 46.12 1.98
2056 2120 3.197766 TCGTTGCTGGTTTCTCCATAGAT 59.802 43.478 0.00 0.00 46.12 1.98
2057 2121 2.565391 TCGTTGCTGGTTTCTCCATAGA 59.435 45.455 0.00 0.00 46.12 1.98
2058 2122 2.932614 CTCGTTGCTGGTTTCTCCATAG 59.067 50.000 0.00 0.00 46.12 2.23
2059 2123 2.354704 CCTCGTTGCTGGTTTCTCCATA 60.355 50.000 0.00 0.00 46.12 2.74
2060 2124 1.611673 CCTCGTTGCTGGTTTCTCCAT 60.612 52.381 0.00 0.00 46.12 3.41
2061 2125 0.250295 CCTCGTTGCTGGTTTCTCCA 60.250 55.000 0.00 0.00 45.01 3.86
2062 2126 0.955919 CCCTCGTTGCTGGTTTCTCC 60.956 60.000 0.00 0.00 0.00 3.71
2063 2127 0.955919 CCCCTCGTTGCTGGTTTCTC 60.956 60.000 0.00 0.00 0.00 2.87
2064 2128 1.073199 CCCCTCGTTGCTGGTTTCT 59.927 57.895 0.00 0.00 0.00 2.52
2065 2129 0.536460 TTCCCCTCGTTGCTGGTTTC 60.536 55.000 0.00 0.00 0.00 2.78
2066 2130 0.537371 CTTCCCCTCGTTGCTGGTTT 60.537 55.000 0.00 0.00 0.00 3.27
2067 2131 1.073199 CTTCCCCTCGTTGCTGGTT 59.927 57.895 0.00 0.00 0.00 3.67
2068 2132 2.750350 CTTCCCCTCGTTGCTGGT 59.250 61.111 0.00 0.00 0.00 4.00
2069 2133 2.045926 CCTTCCCCTCGTTGCTGG 60.046 66.667 0.00 0.00 0.00 4.85
2070 2134 1.078848 CTCCTTCCCCTCGTTGCTG 60.079 63.158 0.00 0.00 0.00 4.41
2071 2135 1.229209 TCTCCTTCCCCTCGTTGCT 60.229 57.895 0.00 0.00 0.00 3.91
2072 2136 1.219393 CTCTCCTTCCCCTCGTTGC 59.781 63.158 0.00 0.00 0.00 4.17
2073 2137 0.247736 CACTCTCCTTCCCCTCGTTG 59.752 60.000 0.00 0.00 0.00 4.10
2074 2138 1.545706 GCACTCTCCTTCCCCTCGTT 61.546 60.000 0.00 0.00 0.00 3.85
2075 2139 1.985116 GCACTCTCCTTCCCCTCGT 60.985 63.158 0.00 0.00 0.00 4.18
2076 2140 1.333636 ATGCACTCTCCTTCCCCTCG 61.334 60.000 0.00 0.00 0.00 4.63
2077 2141 0.467804 GATGCACTCTCCTTCCCCTC 59.532 60.000 0.00 0.00 0.00 4.30
2078 2142 0.043940 AGATGCACTCTCCTTCCCCT 59.956 55.000 0.00 0.00 0.00 4.79
2079 2143 1.414550 GTAGATGCACTCTCCTTCCCC 59.585 57.143 0.00 0.00 35.28 4.81
2080 2144 2.111384 TGTAGATGCACTCTCCTTCCC 58.889 52.381 0.00 0.00 35.28 3.97
2081 2145 4.262249 GGTATGTAGATGCACTCTCCTTCC 60.262 50.000 0.00 0.00 35.28 3.46
2082 2146 4.262249 GGGTATGTAGATGCACTCTCCTTC 60.262 50.000 0.00 0.00 35.28 3.46
2083 2147 3.643792 GGGTATGTAGATGCACTCTCCTT 59.356 47.826 0.00 0.00 35.28 3.36
2084 2148 3.116939 AGGGTATGTAGATGCACTCTCCT 60.117 47.826 0.00 0.00 35.28 3.69
2085 2149 3.235200 AGGGTATGTAGATGCACTCTCC 58.765 50.000 0.00 0.00 35.28 3.71
2086 2150 4.100189 ACAAGGGTATGTAGATGCACTCTC 59.900 45.833 0.00 0.00 35.28 3.20
2087 2151 4.033709 ACAAGGGTATGTAGATGCACTCT 58.966 43.478 0.00 0.00 38.06 3.24
2088 2152 4.408182 ACAAGGGTATGTAGATGCACTC 57.592 45.455 0.00 0.00 25.83 3.51
2097 2161 5.105877 GCATAGCGATCTACAAGGGTATGTA 60.106 44.000 13.28 0.00 40.87 2.29
2098 2162 4.322049 GCATAGCGATCTACAAGGGTATGT 60.322 45.833 13.28 0.00 40.87 2.29
2099 2163 4.177026 GCATAGCGATCTACAAGGGTATG 58.823 47.826 9.52 9.52 41.40 2.39
2100 2164 4.457834 GCATAGCGATCTACAAGGGTAT 57.542 45.455 0.00 0.00 0.00 2.73
2101 2165 3.936372 GCATAGCGATCTACAAGGGTA 57.064 47.619 0.00 0.00 0.00 3.69
2102 2166 2.821991 GCATAGCGATCTACAAGGGT 57.178 50.000 0.00 0.00 0.00 4.34
2115 2179 0.026803 CTTGAACGCTTCCGCATAGC 59.973 55.000 0.00 0.00 38.22 2.97
2116 2180 1.590238 CTCTTGAACGCTTCCGCATAG 59.410 52.381 0.00 0.00 38.22 2.23
2117 2181 1.203758 TCTCTTGAACGCTTCCGCATA 59.796 47.619 0.00 0.00 38.22 3.14
2118 2182 0.037326 TCTCTTGAACGCTTCCGCAT 60.037 50.000 0.00 0.00 38.22 4.73
2119 2183 0.249699 TTCTCTTGAACGCTTCCGCA 60.250 50.000 0.00 0.00 38.22 5.69
2120 2184 0.164002 GTTCTCTTGAACGCTTCCGC 59.836 55.000 0.00 0.00 42.39 5.54
2128 2192 2.249844 TCAACCCCGTTCTCTTGAAC 57.750 50.000 0.00 0.00 46.59 3.18
2129 2193 2.486548 CCTTCAACCCCGTTCTCTTGAA 60.487 50.000 0.00 0.00 32.90 2.69
2130 2194 1.071699 CCTTCAACCCCGTTCTCTTGA 59.928 52.381 0.00 0.00 0.00 3.02
2131 2195 1.071699 TCCTTCAACCCCGTTCTCTTG 59.928 52.381 0.00 0.00 0.00 3.02
2132 2196 1.348036 CTCCTTCAACCCCGTTCTCTT 59.652 52.381 0.00 0.00 0.00 2.85
2133 2197 0.977395 CTCCTTCAACCCCGTTCTCT 59.023 55.000 0.00 0.00 0.00 3.10
2134 2198 0.685660 ACTCCTTCAACCCCGTTCTC 59.314 55.000 0.00 0.00 0.00 2.87
2135 2199 0.685660 GACTCCTTCAACCCCGTTCT 59.314 55.000 0.00 0.00 0.00 3.01
2136 2200 0.669625 CGACTCCTTCAACCCCGTTC 60.670 60.000 0.00 0.00 0.00 3.95
2137 2201 1.370064 CGACTCCTTCAACCCCGTT 59.630 57.895 0.00 0.00 0.00 4.44
2138 2202 0.540365 TACGACTCCTTCAACCCCGT 60.540 55.000 0.00 0.00 0.00 5.28
2139 2203 0.108945 GTACGACTCCTTCAACCCCG 60.109 60.000 0.00 0.00 0.00 5.73
2140 2204 1.204231 GAGTACGACTCCTTCAACCCC 59.796 57.143 0.00 0.00 39.28 4.95
2141 2205 1.135460 CGAGTACGACTCCTTCAACCC 60.135 57.143 8.73 0.00 42.12 4.11
2142 2206 1.538950 ACGAGTACGACTCCTTCAACC 59.461 52.381 8.73 0.00 42.12 3.77
2143 2207 2.724228 CGACGAGTACGACTCCTTCAAC 60.724 54.545 8.73 0.00 42.12 3.18
2144 2208 1.462283 CGACGAGTACGACTCCTTCAA 59.538 52.381 8.73 0.00 42.12 2.69
2145 2209 1.073964 CGACGAGTACGACTCCTTCA 58.926 55.000 8.73 0.00 42.12 3.02
2146 2210 1.074752 ACGACGAGTACGACTCCTTC 58.925 55.000 0.00 5.74 42.12 3.46
2147 2211 0.795085 CACGACGAGTACGACTCCTT 59.205 55.000 0.00 0.00 42.12 3.36
2148 2212 0.037882 TCACGACGAGTACGACTCCT 60.038 55.000 0.00 0.00 42.12 3.69
2149 2213 1.005137 GATCACGACGAGTACGACTCC 60.005 57.143 0.00 0.00 42.12 3.85
2150 2214 1.005137 GGATCACGACGAGTACGACTC 60.005 57.143 0.00 0.00 41.71 3.36
2151 2215 1.005340 GGATCACGACGAGTACGACT 58.995 55.000 0.00 0.00 42.66 4.18
2152 2216 0.723414 TGGATCACGACGAGTACGAC 59.277 55.000 0.00 0.00 42.66 4.34
2153 2217 1.441738 TTGGATCACGACGAGTACGA 58.558 50.000 0.00 0.00 42.66 3.43
2154 2218 2.251869 TTTGGATCACGACGAGTACG 57.748 50.000 0.00 0.00 45.75 3.67
2155 2219 3.766151 TGATTTGGATCACGACGAGTAC 58.234 45.455 0.00 0.00 37.37 2.73
2165 2229 2.104792 GGATCTCCGGTGATTTGGATCA 59.895 50.000 19.47 0.00 39.92 2.92
2166 2230 2.370189 AGGATCTCCGGTGATTTGGATC 59.630 50.000 19.47 7.17 42.08 3.36
2167 2231 2.412591 AGGATCTCCGGTGATTTGGAT 58.587 47.619 19.47 0.00 42.08 3.41
2168 2232 1.879575 AGGATCTCCGGTGATTTGGA 58.120 50.000 19.47 0.40 42.08 3.53
2169 2233 2.700897 ACTAGGATCTCCGGTGATTTGG 59.299 50.000 19.47 14.63 42.08 3.28
2170 2234 3.722147 CACTAGGATCTCCGGTGATTTG 58.278 50.000 19.47 12.17 42.60 2.32
2171 2235 2.103263 GCACTAGGATCTCCGGTGATTT 59.897 50.000 19.47 13.39 42.60 2.17
2172 2236 1.689273 GCACTAGGATCTCCGGTGATT 59.311 52.381 19.47 8.05 42.60 2.57
2173 2237 1.333177 GCACTAGGATCTCCGGTGAT 58.667 55.000 18.63 18.63 42.60 3.06
2174 2238 0.755698 GGCACTAGGATCTCCGGTGA 60.756 60.000 21.08 8.96 42.60 4.02
2175 2239 1.742768 GGCACTAGGATCTCCGGTG 59.257 63.158 0.00 15.88 42.73 4.94
2176 2240 1.828660 CGGCACTAGGATCTCCGGT 60.829 63.158 0.00 0.00 42.08 5.28
2177 2241 1.107538 TTCGGCACTAGGATCTCCGG 61.108 60.000 0.00 0.00 42.08 5.14
2178 2242 0.030908 GTTCGGCACTAGGATCTCCG 59.969 60.000 0.00 0.00 42.08 4.63
2179 2243 0.030908 CGTTCGGCACTAGGATCTCC 59.969 60.000 0.00 0.00 0.00 3.71
2180 2244 0.030908 CCGTTCGGCACTAGGATCTC 59.969 60.000 0.00 0.00 0.00 2.75
2181 2245 0.395311 TCCGTTCGGCACTAGGATCT 60.395 55.000 6.35 0.00 0.00 2.75
2182 2246 0.248949 GTCCGTTCGGCACTAGGATC 60.249 60.000 6.35 0.00 33.15 3.36
2183 2247 1.814527 GTCCGTTCGGCACTAGGAT 59.185 57.895 6.35 0.00 33.15 3.24
2184 2248 2.693762 CGTCCGTTCGGCACTAGGA 61.694 63.158 6.35 0.00 0.00 2.94
2185 2249 2.202570 CGTCCGTTCGGCACTAGG 60.203 66.667 6.35 0.00 0.00 3.02
2186 2250 2.202570 CCGTCCGTTCGGCACTAG 60.203 66.667 6.35 0.00 43.96 2.57
2193 2257 4.052229 AGAGGTGCCGTCCGTTCG 62.052 66.667 0.00 0.00 0.00 3.95
2194 2258 2.432628 CAGAGGTGCCGTCCGTTC 60.433 66.667 0.00 0.00 0.00 3.95
2195 2259 4.681978 GCAGAGGTGCCGTCCGTT 62.682 66.667 0.00 0.00 44.72 4.44
2204 2268 0.304705 GTGTGTTGAACGCAGAGGTG 59.695 55.000 12.36 0.00 39.54 4.00
2205 2269 1.151777 CGTGTGTTGAACGCAGAGGT 61.152 55.000 12.36 0.00 39.54 3.85
2206 2270 1.151777 ACGTGTGTTGAACGCAGAGG 61.152 55.000 12.36 7.31 44.80 3.69
2207 2271 1.189446 GTACGTGTGTTGAACGCAGAG 59.811 52.381 12.36 11.65 44.80 3.35
2208 2272 1.202203 GTACGTGTGTTGAACGCAGA 58.798 50.000 12.36 0.00 44.80 4.26
2209 2273 0.924777 TGTACGTGTGTTGAACGCAG 59.075 50.000 12.36 8.96 44.80 5.18
2210 2274 0.924777 CTGTACGTGTGTTGAACGCA 59.075 50.000 7.58 7.58 44.80 5.24
2211 2275 0.382636 GCTGTACGTGTGTTGAACGC 60.383 55.000 1.20 1.20 44.80 4.84
2212 2276 0.231279 GGCTGTACGTGTGTTGAACG 59.769 55.000 0.00 0.00 46.32 3.95
2213 2277 0.584876 GGGCTGTACGTGTGTTGAAC 59.415 55.000 0.00 0.00 0.00 3.18
2214 2278 0.876777 CGGGCTGTACGTGTGTTGAA 60.877 55.000 0.00 0.00 0.00 2.69
2215 2279 1.300311 CGGGCTGTACGTGTGTTGA 60.300 57.895 0.00 0.00 0.00 3.18
2216 2280 2.314647 CCGGGCTGTACGTGTGTTG 61.315 63.158 0.00 0.00 0.00 3.33
2217 2281 2.029964 CCGGGCTGTACGTGTGTT 59.970 61.111 0.00 0.00 0.00 3.32
2218 2282 3.228759 ACCGGGCTGTACGTGTGT 61.229 61.111 6.32 0.00 0.00 3.72
2219 2283 2.736995 CACCGGGCTGTACGTGTG 60.737 66.667 6.32 0.00 0.00 3.82
2220 2284 2.913578 TCACCGGGCTGTACGTGT 60.914 61.111 6.32 0.00 0.00 4.49
2221 2285 2.431942 GTCACCGGGCTGTACGTG 60.432 66.667 6.32 0.00 0.00 4.49
2222 2286 4.047059 CGTCACCGGGCTGTACGT 62.047 66.667 6.32 0.00 0.00 3.57
2223 2287 3.958822 GACGTCACCGGGCTGTACG 62.959 68.421 11.55 10.46 38.78 3.67
2224 2288 2.126189 GACGTCACCGGGCTGTAC 60.126 66.667 11.55 0.00 38.78 2.90
2225 2289 2.282674 AGACGTCACCGGGCTGTA 60.283 61.111 19.50 0.00 38.78 2.74
2226 2290 3.681835 GAGACGTCACCGGGCTGT 61.682 66.667 19.50 0.00 38.78 4.40
2227 2291 4.436998 GGAGACGTCACCGGGCTG 62.437 72.222 19.50 0.00 38.78 4.85
2230 2294 3.075005 ATGGGAGACGTCACCGGG 61.075 66.667 23.22 0.00 38.78 5.73
2231 2295 2.184322 CATGGGAGACGTCACCGG 59.816 66.667 23.22 12.91 38.78 5.28
2232 2296 2.509336 GCATGGGAGACGTCACCG 60.509 66.667 23.22 12.45 40.83 4.94
2233 2297 2.125106 GGCATGGGAGACGTCACC 60.125 66.667 22.30 22.30 0.00 4.02
2234 2298 1.021390 CAAGGCATGGGAGACGTCAC 61.021 60.000 19.50 11.89 0.00 3.67
2235 2299 1.191489 TCAAGGCATGGGAGACGTCA 61.191 55.000 19.50 0.00 0.00 4.35
2236 2300 0.179000 ATCAAGGCATGGGAGACGTC 59.821 55.000 7.70 7.70 0.00 4.34
2237 2301 0.179000 GATCAAGGCATGGGAGACGT 59.821 55.000 0.00 0.00 0.00 4.34
2238 2302 0.533755 GGATCAAGGCATGGGAGACG 60.534 60.000 0.00 0.00 0.00 4.18
2239 2303 0.548031 TGGATCAAGGCATGGGAGAC 59.452 55.000 0.00 0.00 0.00 3.36
2240 2304 0.841961 CTGGATCAAGGCATGGGAGA 59.158 55.000 0.00 0.00 0.00 3.71
2241 2305 0.822532 GCTGGATCAAGGCATGGGAG 60.823 60.000 0.00 0.00 0.00 4.30
2242 2306 1.228228 GCTGGATCAAGGCATGGGA 59.772 57.895 0.00 0.00 0.00 4.37
2243 2307 0.685131 TTGCTGGATCAAGGCATGGG 60.685 55.000 0.00 0.00 35.84 4.00
2244 2308 0.744874 CTTGCTGGATCAAGGCATGG 59.255 55.000 0.00 0.00 39.68 3.66
2245 2309 1.758936 TCTTGCTGGATCAAGGCATG 58.241 50.000 0.00 6.34 42.68 4.06
2246 2310 2.025605 TCTTCTTGCTGGATCAAGGCAT 60.026 45.455 0.00 0.00 42.68 4.40
2247 2311 1.352017 TCTTCTTGCTGGATCAAGGCA 59.648 47.619 0.00 0.80 42.68 4.75
2248 2312 2.015587 CTCTTCTTGCTGGATCAAGGC 58.984 52.381 0.00 0.00 42.68 4.35
2249 2313 3.533547 CTCTCTTCTTGCTGGATCAAGG 58.466 50.000 0.00 0.00 42.68 3.61
2250 2314 3.533547 CCTCTCTTCTTGCTGGATCAAG 58.466 50.000 0.00 0.00 43.53 3.02
2251 2315 2.238144 CCCTCTCTTCTTGCTGGATCAA 59.762 50.000 0.00 0.00 0.00 2.57
2252 2316 1.836166 CCCTCTCTTCTTGCTGGATCA 59.164 52.381 0.00 0.00 0.00 2.92
2253 2317 2.102925 CTCCCTCTCTTCTTGCTGGATC 59.897 54.545 0.00 0.00 0.00 3.36
2254 2318 2.117865 CTCCCTCTCTTCTTGCTGGAT 58.882 52.381 0.00 0.00 0.00 3.41
2255 2319 1.077828 TCTCCCTCTCTTCTTGCTGGA 59.922 52.381 0.00 0.00 0.00 3.86
2256 2320 1.481772 CTCTCCCTCTCTTCTTGCTGG 59.518 57.143 0.00 0.00 0.00 4.85
2257 2321 1.481772 CCTCTCCCTCTCTTCTTGCTG 59.518 57.143 0.00 0.00 0.00 4.41
2258 2322 1.078656 ACCTCTCCCTCTCTTCTTGCT 59.921 52.381 0.00 0.00 0.00 3.91
2259 2323 1.567357 ACCTCTCCCTCTCTTCTTGC 58.433 55.000 0.00 0.00 0.00 4.01
2260 2324 3.169099 TCAACCTCTCCCTCTCTTCTTG 58.831 50.000 0.00 0.00 0.00 3.02
2261 2325 3.440127 CTCAACCTCTCCCTCTCTTCTT 58.560 50.000 0.00 0.00 0.00 2.52
2262 2326 2.292192 CCTCAACCTCTCCCTCTCTTCT 60.292 54.545 0.00 0.00 0.00 2.85
2263 2327 2.107366 CCTCAACCTCTCCCTCTCTTC 58.893 57.143 0.00 0.00 0.00 2.87
2264 2328 1.719378 TCCTCAACCTCTCCCTCTCTT 59.281 52.381 0.00 0.00 0.00 2.85
2265 2329 1.388174 TCCTCAACCTCTCCCTCTCT 58.612 55.000 0.00 0.00 0.00 3.10
2266 2330 2.239681 TTCCTCAACCTCTCCCTCTC 57.760 55.000 0.00 0.00 0.00 3.20
2267 2331 2.640332 GTTTTCCTCAACCTCTCCCTCT 59.360 50.000 0.00 0.00 0.00 3.69
2268 2332 2.640332 AGTTTTCCTCAACCTCTCCCTC 59.360 50.000 0.00 0.00 0.00 4.30
2269 2333 2.707554 AGTTTTCCTCAACCTCTCCCT 58.292 47.619 0.00 0.00 0.00 4.20
2270 2334 3.181443 TGAAGTTTTCCTCAACCTCTCCC 60.181 47.826 0.00 0.00 0.00 4.30
2271 2335 4.086706 TGAAGTTTTCCTCAACCTCTCC 57.913 45.455 0.00 0.00 0.00 3.71
2272 2336 4.697828 GGATGAAGTTTTCCTCAACCTCTC 59.302 45.833 0.00 0.00 0.00 3.20
2273 2337 4.104738 TGGATGAAGTTTTCCTCAACCTCT 59.895 41.667 7.18 0.00 32.95 3.69
2274 2338 4.398319 TGGATGAAGTTTTCCTCAACCTC 58.602 43.478 7.18 0.00 32.95 3.85
2275 2339 4.401925 CTGGATGAAGTTTTCCTCAACCT 58.598 43.478 7.18 0.00 32.95 3.50
2276 2340 3.057245 GCTGGATGAAGTTTTCCTCAACC 60.057 47.826 7.18 0.00 32.95 3.77
2277 2341 3.569701 TGCTGGATGAAGTTTTCCTCAAC 59.430 43.478 7.18 0.00 32.95 3.18
2278 2342 3.822735 CTGCTGGATGAAGTTTTCCTCAA 59.177 43.478 7.18 0.00 32.95 3.02
2279 2343 3.415212 CTGCTGGATGAAGTTTTCCTCA 58.585 45.455 7.18 5.03 32.95 3.86
2280 2344 2.163211 GCTGCTGGATGAAGTTTTCCTC 59.837 50.000 7.18 1.62 32.95 3.71
2281 2345 2.165998 GCTGCTGGATGAAGTTTTCCT 58.834 47.619 7.18 0.00 32.95 3.36
2282 2346 1.888512 TGCTGCTGGATGAAGTTTTCC 59.111 47.619 0.00 0.03 0.00 3.13
2283 2347 2.670509 GCTGCTGCTGGATGAAGTTTTC 60.671 50.000 8.53 0.00 36.03 2.29
2284 2348 1.271656 GCTGCTGCTGGATGAAGTTTT 59.728 47.619 8.53 0.00 36.03 2.43
2285 2349 0.886563 GCTGCTGCTGGATGAAGTTT 59.113 50.000 8.53 0.00 36.03 2.66
2286 2350 0.251033 TGCTGCTGCTGGATGAAGTT 60.251 50.000 17.00 0.00 40.48 2.66
2287 2351 0.959372 GTGCTGCTGCTGGATGAAGT 60.959 55.000 17.00 0.00 40.48 3.01
2288 2352 0.958876 TGTGCTGCTGCTGGATGAAG 60.959 55.000 17.00 0.00 40.48 3.02
2289 2353 0.537828 TTGTGCTGCTGCTGGATGAA 60.538 50.000 17.00 0.77 40.48 2.57
2290 2354 1.073548 TTGTGCTGCTGCTGGATGA 59.926 52.632 17.00 0.00 40.48 2.92
2291 2355 1.211969 GTTGTGCTGCTGCTGGATG 59.788 57.895 17.00 0.00 40.48 3.51
2292 2356 2.330372 CGTTGTGCTGCTGCTGGAT 61.330 57.895 17.00 0.00 40.48 3.41
2293 2357 2.974148 CGTTGTGCTGCTGCTGGA 60.974 61.111 17.00 2.36 40.48 3.86
2294 2358 4.034258 CCGTTGTGCTGCTGCTGG 62.034 66.667 17.00 7.00 40.48 4.85
2295 2359 4.695231 GCCGTTGTGCTGCTGCTG 62.695 66.667 17.00 0.77 40.48 4.41
2298 2362 4.671549 CACGCCGTTGTGCTGCTG 62.672 66.667 0.00 0.00 32.31 4.41
2301 2365 4.312231 CACCACGCCGTTGTGCTG 62.312 66.667 8.58 0.00 38.55 4.41
2304 2368 3.947841 CACCACCACGCCGTTGTG 61.948 66.667 13.93 13.93 39.60 3.33
2312 2376 3.238497 TCCTCCACCACCACCACG 61.238 66.667 0.00 0.00 0.00 4.94
2313 2377 2.750350 CTCCTCCACCACCACCAC 59.250 66.667 0.00 0.00 0.00 4.16
2314 2378 3.249189 GCTCCTCCACCACCACCA 61.249 66.667 0.00 0.00 0.00 4.17
2315 2379 4.394712 CGCTCCTCCACCACCACC 62.395 72.222 0.00 0.00 0.00 4.61
2316 2380 3.626924 ACGCTCCTCCACCACCAC 61.627 66.667 0.00 0.00 0.00 4.16
2317 2381 3.625897 CACGCTCCTCCACCACCA 61.626 66.667 0.00 0.00 0.00 4.17
2318 2382 4.394712 CCACGCTCCTCCACCACC 62.395 72.222 0.00 0.00 0.00 4.61
2319 2383 2.280552 TACCACGCTCCTCCACCAC 61.281 63.158 0.00 0.00 0.00 4.16
2320 2384 2.118732 TACCACGCTCCTCCACCA 59.881 61.111 0.00 0.00 0.00 4.17
2321 2385 1.946475 GAGTACCACGCTCCTCCACC 61.946 65.000 0.00 0.00 0.00 4.61
2322 2386 1.511768 GAGTACCACGCTCCTCCAC 59.488 63.158 0.00 0.00 0.00 4.02
2323 2387 1.681327 GGAGTACCACGCTCCTCCA 60.681 63.158 4.26 0.00 46.71 3.86
2324 2388 3.208335 GGAGTACCACGCTCCTCC 58.792 66.667 4.26 0.00 46.71 4.30
2328 2392 0.739561 CCTACTGGAGTACCACGCTC 59.260 60.000 0.00 0.00 41.77 5.03
2329 2393 0.683504 CCCTACTGGAGTACCACGCT 60.684 60.000 0.00 0.00 41.77 5.07
2330 2394 1.814527 CCCTACTGGAGTACCACGC 59.185 63.158 0.00 0.00 41.77 5.34
2331 2395 0.683504 AGCCCTACTGGAGTACCACG 60.684 60.000 0.00 0.00 41.77 4.94
2332 2396 1.481363 GAAGCCCTACTGGAGTACCAC 59.519 57.143 0.00 0.00 41.77 4.16
2333 2397 1.861982 GAAGCCCTACTGGAGTACCA 58.138 55.000 0.00 0.00 44.76 3.25
2334 2398 0.745468 CGAAGCCCTACTGGAGTACC 59.255 60.000 0.00 0.00 35.39 3.34
2349 2413 3.599792 CTTGCGGTGCTTGGCGAAG 62.600 63.158 3.77 3.77 0.00 3.79
2350 2414 3.659092 CTTGCGGTGCTTGGCGAA 61.659 61.111 0.00 0.00 0.00 4.70
2351 2415 4.617520 TCTTGCGGTGCTTGGCGA 62.618 61.111 0.00 0.00 0.00 5.54
2352 2416 3.192954 TTTCTTGCGGTGCTTGGCG 62.193 57.895 0.00 0.00 0.00 5.69
2353 2417 1.661509 GTTTCTTGCGGTGCTTGGC 60.662 57.895 0.00 0.00 0.00 4.52
2354 2418 1.370414 CGTTTCTTGCGGTGCTTGG 60.370 57.895 0.00 0.00 0.00 3.61
2355 2419 0.384725 CTCGTTTCTTGCGGTGCTTG 60.385 55.000 0.00 0.00 0.00 4.01
2356 2420 1.507141 CCTCGTTTCTTGCGGTGCTT 61.507 55.000 0.00 0.00 0.00 3.91
2357 2421 1.961277 CCTCGTTTCTTGCGGTGCT 60.961 57.895 0.00 0.00 0.00 4.40
2358 2422 1.901650 CTCCTCGTTTCTTGCGGTGC 61.902 60.000 0.00 0.00 0.00 5.01
2359 2423 1.291877 CCTCCTCGTTTCTTGCGGTG 61.292 60.000 0.00 0.00 0.00 4.94
2360 2424 1.004918 CCTCCTCGTTTCTTGCGGT 60.005 57.895 0.00 0.00 0.00 5.68
2361 2425 0.737715 CTCCTCCTCGTTTCTTGCGG 60.738 60.000 0.00 0.00 0.00 5.69
2362 2426 0.243907 TCTCCTCCTCGTTTCTTGCG 59.756 55.000 0.00 0.00 0.00 4.85
2363 2427 1.546476 TCTCTCCTCCTCGTTTCTTGC 59.454 52.381 0.00 0.00 0.00 4.01
2364 2428 2.165437 CCTCTCTCCTCCTCGTTTCTTG 59.835 54.545 0.00 0.00 0.00 3.02
2365 2429 2.225167 ACCTCTCTCCTCCTCGTTTCTT 60.225 50.000 0.00 0.00 0.00 2.52
2366 2430 1.356398 ACCTCTCTCCTCCTCGTTTCT 59.644 52.381 0.00 0.00 0.00 2.52
2367 2431 1.842052 ACCTCTCTCCTCCTCGTTTC 58.158 55.000 0.00 0.00 0.00 2.78
2368 2432 2.357361 CCTACCTCTCTCCTCCTCGTTT 60.357 54.545 0.00 0.00 0.00 3.60
2369 2433 1.213430 CCTACCTCTCTCCTCCTCGTT 59.787 57.143 0.00 0.00 0.00 3.85
2370 2434 0.841289 CCTACCTCTCTCCTCCTCGT 59.159 60.000 0.00 0.00 0.00 4.18
2371 2435 0.109723 CCCTACCTCTCTCCTCCTCG 59.890 65.000 0.00 0.00 0.00 4.63
2372 2436 0.178973 GCCCTACCTCTCTCCTCCTC 60.179 65.000 0.00 0.00 0.00 3.71
2373 2437 1.661004 GGCCCTACCTCTCTCCTCCT 61.661 65.000 0.00 0.00 34.51 3.69
2374 2438 1.152419 GGCCCTACCTCTCTCCTCC 60.152 68.421 0.00 0.00 34.51 4.30
2375 2439 1.529713 CGGCCCTACCTCTCTCCTC 60.530 68.421 0.00 0.00 35.61 3.71
2376 2440 2.604152 CGGCCCTACCTCTCTCCT 59.396 66.667 0.00 0.00 35.61 3.69
2377 2441 3.228017 GCGGCCCTACCTCTCTCC 61.228 72.222 0.00 0.00 35.61 3.71
2378 2442 3.597728 CGCGGCCCTACCTCTCTC 61.598 72.222 0.00 0.00 35.61 3.20
2390 2454 4.537433 ATCTCTTCCTGGCGCGGC 62.537 66.667 27.61 27.61 0.00 6.53
2391 2455 2.279784 GATCTCTTCCTGGCGCGG 60.280 66.667 8.83 0.00 0.00 6.46
2392 2456 0.740868 TTTGATCTCTTCCTGGCGCG 60.741 55.000 0.00 0.00 0.00 6.86
2393 2457 1.601430 GATTTGATCTCTTCCTGGCGC 59.399 52.381 0.00 0.00 0.00 6.53
2394 2458 1.863454 CGATTTGATCTCTTCCTGGCG 59.137 52.381 0.00 0.00 0.00 5.69
2395 2459 2.611292 CACGATTTGATCTCTTCCTGGC 59.389 50.000 0.00 0.00 0.00 4.85
2396 2460 3.620374 CACACGATTTGATCTCTTCCTGG 59.380 47.826 0.00 0.00 0.00 4.45
2397 2461 4.248859 ACACACGATTTGATCTCTTCCTG 58.751 43.478 0.00 0.00 0.00 3.86
2398 2462 4.221703 AGACACACGATTTGATCTCTTCCT 59.778 41.667 0.00 0.00 0.00 3.36
2399 2463 4.499183 AGACACACGATTTGATCTCTTCC 58.501 43.478 0.00 0.00 0.00 3.46
2400 2464 5.163913 CCAAGACACACGATTTGATCTCTTC 60.164 44.000 0.00 0.00 0.00 2.87
2401 2465 4.692625 CCAAGACACACGATTTGATCTCTT 59.307 41.667 0.00 0.00 0.00 2.85
2402 2466 4.021104 TCCAAGACACACGATTTGATCTCT 60.021 41.667 0.00 0.00 0.00 3.10
2403 2467 4.245660 TCCAAGACACACGATTTGATCTC 58.754 43.478 0.00 0.00 0.00 2.75
2404 2468 4.271696 TCCAAGACACACGATTTGATCT 57.728 40.909 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.