Multiple sequence alignment - TraesCS3A01G378000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G378000 chr3A 100.000 4198 0 0 1 4198 627816266 627820463 0.000000e+00 7753.0
1 TraesCS3A01G378000 chr3A 86.425 2011 189 38 903 2846 627785325 627787318 0.000000e+00 2124.0
2 TraesCS3A01G378000 chr3A 97.719 570 13 0 2584 3153 627705953 627706522 0.000000e+00 981.0
3 TraesCS3A01G378000 chr3A 97.399 346 9 0 549 894 627793842 627794187 1.300000e-164 590.0
4 TraesCS3A01G378000 chr3A 95.833 312 12 1 3228 3539 627706674 627706984 1.740000e-138 503.0
5 TraesCS3A01G378000 chr3A 88.079 302 17 6 3531 3831 627707089 627707372 1.450000e-89 340.0
6 TraesCS3A01G378000 chr3A 98.802 167 2 0 903 1069 627793675 627793841 8.820000e-77 298.0
7 TraesCS3A01G378000 chr3A 97.810 137 3 0 3924 4060 454771913 454772049 1.950000e-58 237.0
8 TraesCS3A01G378000 chr3A 96.094 128 4 1 4072 4198 159702208 159702081 1.530000e-49 207.0
9 TraesCS3A01G378000 chr3A 88.462 52 5 1 3523 3573 627678247 627678196 1.260000e-05 62.1
10 TraesCS3A01G378000 chr3A 96.774 31 1 0 2929 2959 627787478 627787508 8.000000e-03 52.8
11 TraesCS3A01G378000 chr3D 88.994 2953 231 35 917 3831 484804978 484807874 0.000000e+00 3567.0
12 TraesCS3A01G378000 chr3D 86.494 1888 198 33 998 2846 484726149 484728018 0.000000e+00 2021.0
13 TraesCS3A01G378000 chr3D 95.521 826 32 1 903 1723 484734371 484735196 0.000000e+00 1315.0
14 TraesCS3A01G378000 chr3D 92.587 688 47 2 1715 2399 484735937 484736623 0.000000e+00 985.0
15 TraesCS3A01G378000 chr3D 76.461 1215 200 52 1048 2222 484672904 484674072 7.820000e-162 580.0
16 TraesCS3A01G378000 chr3D 97.619 42 1 0 2929 2970 484728177 484728218 5.820000e-09 73.1
17 TraesCS3A01G378000 chr3D 97.619 42 1 0 2929 2970 484737291 484737332 5.820000e-09 73.1
18 TraesCS3A01G378000 chr3B 88.374 2976 238 48 930 3831 647542264 647545205 0.000000e+00 3480.0
19 TraesCS3A01G378000 chr3B 76.452 1257 210 52 1007 2223 647465538 647466748 1.670000e-168 603.0
20 TraesCS3A01G378000 chr3B 88.283 495 51 2 1867 2354 647470152 647470646 1.680000e-163 586.0
21 TraesCS3A01G378000 chr3B 95.238 42 2 0 2929 2970 647472924 647472965 2.710000e-07 67.6
22 TraesCS3A01G378000 chr1A 97.318 895 24 0 1 895 219365609 219364715 0.000000e+00 1520.0
23 TraesCS3A01G378000 chr1A 98.006 351 6 1 549 899 219370583 219370234 3.590000e-170 608.0
24 TraesCS3A01G378000 chr1A 95.946 148 4 2 3915 4060 28616267 28616120 5.420000e-59 239.0
25 TraesCS3A01G378000 chr6A 96.656 897 28 1 1 895 579422363 579421467 0.000000e+00 1489.0
26 TraesCS3A01G378000 chr6A 98.540 137 2 0 3924 4060 602489827 602489963 4.190000e-60 243.0
27 TraesCS3A01G378000 chr6A 95.312 128 4 2 4072 4198 126792705 126792579 7.120000e-48 202.0
28 TraesCS3A01G378000 chr6A 95.312 128 5 1 4072 4198 155251728 155251855 7.120000e-48 202.0
29 TraesCS3A01G378000 chr6B 88.483 903 97 6 1 899 531871833 531872732 0.000000e+00 1085.0
30 TraesCS3A01G378000 chr6B 77.830 212 33 11 1014 1218 75268455 75268251 7.370000e-23 119.0
31 TraesCS3A01G378000 chr6B 81.250 144 22 4 1079 1218 63989127 63989269 1.230000e-20 111.0
32 TraesCS3A01G378000 chr1B 83.201 881 128 17 36 907 2237992 2237123 0.000000e+00 789.0
33 TraesCS3A01G378000 chr1B 100.000 28 0 0 3 30 2262548 2262521 8.000000e-03 52.8
34 TraesCS3A01G378000 chr5A 96.689 151 5 0 3924 4074 1838508 1838658 6.970000e-63 252.0
35 TraesCS3A01G378000 chr5A 96.667 150 5 0 3924 4073 582979358 582979209 2.510000e-62 250.0
36 TraesCS3A01G378000 chr5A 98.540 137 2 0 3924 4060 94080818 94080682 4.190000e-60 243.0
37 TraesCS3A01G378000 chr5A 97.810 137 3 0 3924 4060 604748214 604748350 1.950000e-58 237.0
38 TraesCS3A01G378000 chr5A 96.063 127 5 0 4072 4198 25819977 25819851 1.530000e-49 207.0
39 TraesCS3A01G378000 chr7A 97.810 137 3 0 3924 4060 477309828 477309964 1.950000e-58 237.0
40 TraesCS3A01G378000 chr7A 95.312 128 4 2 4072 4198 534834619 534834745 7.120000e-48 202.0
41 TraesCS3A01G378000 chr7A 80.531 113 18 4 4006 4116 267989200 267989310 2.690000e-12 84.2
42 TraesCS3A01G378000 chr2A 94.483 145 6 2 3918 4060 513641381 513641237 5.460000e-54 222.0
43 TraesCS3A01G378000 chr2A 96.094 128 3 2 4072 4198 132191963 132192089 1.530000e-49 207.0
44 TraesCS3A01G378000 chr2A 96.063 127 5 0 4072 4198 181469252 181469126 1.530000e-49 207.0
45 TraesCS3A01G378000 chr4A 96.063 127 5 0 4072 4198 472196508 472196382 1.530000e-49 207.0
46 TraesCS3A01G378000 chr4A 95.312 128 5 1 4072 4198 113044759 113044886 7.120000e-48 202.0
47 TraesCS3A01G378000 chr1D 82.609 161 28 0 1058 1218 456280423 456280263 4.380000e-30 143.0
48 TraesCS3A01G378000 chr5B 100.000 28 0 0 585 612 18139330 18139303 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G378000 chr3A 627816266 627820463 4197 False 7753.000000 7753 100.000000 1 4198 1 chr3A.!!$F2 4197
1 TraesCS3A01G378000 chr3A 627785325 627787508 2183 False 1088.400000 2124 91.599500 903 2959 2 chr3A.!!$F4 2056
2 TraesCS3A01G378000 chr3A 627705953 627707372 1419 False 608.000000 981 93.877000 2584 3831 3 chr3A.!!$F3 1247
3 TraesCS3A01G378000 chr3A 627793675 627794187 512 False 444.000000 590 98.100500 549 1069 2 chr3A.!!$F5 520
4 TraesCS3A01G378000 chr3D 484804978 484807874 2896 False 3567.000000 3567 88.994000 917 3831 1 chr3D.!!$F2 2914
5 TraesCS3A01G378000 chr3D 484726149 484728218 2069 False 1047.050000 2021 92.056500 998 2970 2 chr3D.!!$F3 1972
6 TraesCS3A01G378000 chr3D 484734371 484737332 2961 False 791.033333 1315 95.242333 903 2970 3 chr3D.!!$F4 2067
7 TraesCS3A01G378000 chr3D 484672904 484674072 1168 False 580.000000 580 76.461000 1048 2222 1 chr3D.!!$F1 1174
8 TraesCS3A01G378000 chr3B 647542264 647545205 2941 False 3480.000000 3480 88.374000 930 3831 1 chr3B.!!$F1 2901
9 TraesCS3A01G378000 chr3B 647465538 647472965 7427 False 418.866667 603 86.657667 1007 2970 3 chr3B.!!$F2 1963
10 TraesCS3A01G378000 chr1A 219364715 219365609 894 True 1520.000000 1520 97.318000 1 895 1 chr1A.!!$R2 894
11 TraesCS3A01G378000 chr6A 579421467 579422363 896 True 1489.000000 1489 96.656000 1 895 1 chr6A.!!$R2 894
12 TraesCS3A01G378000 chr6B 531871833 531872732 899 False 1085.000000 1085 88.483000 1 899 1 chr6B.!!$F2 898
13 TraesCS3A01G378000 chr1B 2237123 2237992 869 True 789.000000 789 83.201000 36 907 1 chr1B.!!$R1 871

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 901 0.036388 CGCTAGGGTGTGACCAATGT 60.036 55.0 0.00 0.00 41.02 2.71 F
1086 1105 0.757188 ACCTACTGCGGGAGATCCTG 60.757 60.0 6.25 3.12 45.30 3.86 F
2553 8779 0.538057 TTTCTGCACCAGCTTGAGGG 60.538 55.0 0.00 0.00 42.74 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2530 8756 1.881973 TCAAGCTGGTGCAGAAATCAC 59.118 47.619 0.00 0.00 42.74 3.06 R
3159 9594 2.154462 ACTGATACCTGTGCACAAAGC 58.846 47.619 21.98 12.41 45.96 3.51 R
3901 10540 0.850100 TGAACCAAAGGAGGCCTGAA 59.150 50.000 12.00 0.00 32.13 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
393 394 1.626686 ATTTGCCGGTGGTTCAATGA 58.373 45.000 1.90 0.00 0.00 2.57
416 417 5.140454 ACTAGTTCAATGGGAAAACTTGCT 58.860 37.500 0.00 0.00 37.23 3.91
514 515 2.416547 CGTTGGTTCAATCGCTCATCTT 59.583 45.455 0.00 0.00 0.00 2.40
562 563 1.141019 GCATTGTCAGGCCAGCATG 59.859 57.895 5.01 0.00 0.00 4.06
599 600 1.393539 CAGCATTCAGTTAACGGACGG 59.606 52.381 8.02 4.92 0.00 4.79
643 644 2.956964 CGAGGCTCGCCGATTCAC 60.957 66.667 25.31 0.00 41.95 3.18
683 684 4.766404 ACTGTAGCATTTCCTTTTTCCG 57.234 40.909 0.00 0.00 0.00 4.30
707 708 1.004918 GTAGCTGTCACCCGTTGCT 60.005 57.895 0.00 0.00 37.72 3.91
812 813 8.017251 ACCTCCCATAGTAATACAAATCCTAGT 58.983 37.037 0.00 0.00 0.00 2.57
879 880 5.365021 AGTTCGATTCCCATCTCAGAATT 57.635 39.130 0.00 0.00 32.91 2.17
882 883 3.062763 CGATTCCCATCTCAGAATTCCG 58.937 50.000 0.65 0.00 32.91 4.30
895 896 0.252197 AATTCCGCTAGGGTGTGACC 59.748 55.000 6.02 0.00 38.33 4.02
896 897 0.907704 ATTCCGCTAGGGTGTGACCA 60.908 55.000 6.02 0.00 41.02 4.02
897 898 1.122632 TTCCGCTAGGGTGTGACCAA 61.123 55.000 6.02 0.00 41.02 3.67
898 899 0.907704 TCCGCTAGGGTGTGACCAAT 60.908 55.000 6.02 0.00 41.02 3.16
899 900 0.744414 CCGCTAGGGTGTGACCAATG 60.744 60.000 6.02 0.00 41.02 2.82
900 901 0.036388 CGCTAGGGTGTGACCAATGT 60.036 55.000 0.00 0.00 41.02 2.71
901 902 1.610624 CGCTAGGGTGTGACCAATGTT 60.611 52.381 0.00 0.00 41.02 2.71
1077 1096 1.919956 AAGACGACGACCTACTGCGG 61.920 60.000 0.00 0.00 0.00 5.69
1086 1105 0.757188 ACCTACTGCGGGAGATCCTG 60.757 60.000 6.25 3.12 45.30 3.86
1099 1118 3.396822 ATCCTGCTCCGCCTACCCT 62.397 63.158 0.00 0.00 0.00 4.34
1554 1582 0.902984 TGGTCGTGGTGGACAGCTAT 60.903 55.000 3.02 0.00 38.70 2.97
1926 6461 2.548493 GGTCAATTGCAATGGTGTTGCT 60.548 45.455 13.82 0.00 45.13 3.91
1946 6481 3.799917 GCTGTTTGGGTGTTGAGGAAATG 60.800 47.826 0.00 0.00 0.00 2.32
2004 6539 1.544825 TTGAGAAGGAGAGGGCACGG 61.545 60.000 0.00 0.00 0.00 4.94
2140 6686 9.784531 ATATTCACACCTATTATCCTTTCACAG 57.215 33.333 0.00 0.00 0.00 3.66
2271 6831 5.106555 CCATGTTCTTTTCTGTGTTAGCGAT 60.107 40.000 0.00 0.00 0.00 4.58
2306 6866 5.623824 GCTCTCTTCGAAACTACCATGGTAA 60.624 44.000 24.59 9.71 0.00 2.85
2310 6870 5.872617 TCTTCGAAACTACCATGGTAATGTG 59.127 40.000 24.59 15.45 31.27 3.21
2361 8529 3.558931 TTGCTGAGTCAGGAAACAAGA 57.441 42.857 23.14 0.88 38.76 3.02
2454 8676 7.546358 TCTTTGATGTTCTGCTTTTCTTTTCA 58.454 30.769 0.00 0.00 0.00 2.69
2467 8689 8.128582 TGCTTTTCTTTTCATGTACTTGTGTAG 58.871 33.333 8.46 5.04 0.00 2.74
2468 8690 8.129211 GCTTTTCTTTTCATGTACTTGTGTAGT 58.871 33.333 8.46 0.00 41.04 2.73
2489 8712 9.197306 TGTAGTACAATACTGTCAGGTCATATT 57.803 33.333 4.53 0.00 39.81 1.28
2553 8779 0.538057 TTTCTGCACCAGCTTGAGGG 60.538 55.000 0.00 0.00 42.74 4.30
2571 8797 5.381757 TGAGGGCTTTCTTACTTGCTAAAA 58.618 37.500 0.00 0.00 0.00 1.52
2575 8801 7.175797 AGGGCTTTCTTACTTGCTAAAATAGT 58.824 34.615 0.00 0.00 0.00 2.12
2632 8911 7.101652 ACAGATCGATACACTTTGACACTAT 57.898 36.000 0.00 0.00 0.00 2.12
3086 9521 5.416952 AGTTTTCCTAGTGATGCTGAAATGG 59.583 40.000 0.00 0.00 0.00 3.16
3090 9525 4.125703 CCTAGTGATGCTGAAATGGTCTC 58.874 47.826 0.00 0.00 0.00 3.36
3091 9526 3.996921 AGTGATGCTGAAATGGTCTCT 57.003 42.857 0.00 0.00 0.00 3.10
3159 9594 0.941463 AACGAGTGAGCTGCTTCGTG 60.941 55.000 23.56 11.62 33.97 4.35
3189 9624 4.631813 GCACAGGTATCAGTAGTTTGAAGG 59.368 45.833 0.00 0.00 0.00 3.46
3463 9986 7.010738 GGTTTGAGCCATATTCATGTTGAAATG 59.989 37.037 0.00 1.24 40.12 2.32
3590 10227 2.670934 CTGGCCATATGCGCCCTC 60.671 66.667 24.08 7.84 46.48 4.30
3597 10234 3.110897 ATATGCGCCCTCTGCAGCA 62.111 57.895 9.47 3.20 46.98 4.41
3661 10298 1.167851 ACCACCATGAATGCGAGTTG 58.832 50.000 0.00 0.00 0.00 3.16
3674 10311 0.588252 CGAGTTGTGCAAAGGGACTG 59.412 55.000 0.00 0.00 40.86 3.51
3676 10314 0.258774 AGTTGTGCAAAGGGACTGGT 59.741 50.000 0.00 0.00 40.86 4.00
3685 10323 3.292460 CAAAGGGACTGGTGGTGTTTTA 58.708 45.455 0.00 0.00 40.86 1.52
3714 10352 8.630054 ACCAGTTAAATTGTGTCATTAGCTTA 57.370 30.769 0.00 0.00 0.00 3.09
3737 10376 9.533253 CTTATTTGACAAGAACCAATCAAAAGT 57.467 29.630 2.69 0.00 42.57 2.66
3745 10384 7.287696 ACAAGAACCAATCAAAAGTCCTGTAAT 59.712 33.333 0.00 0.00 0.00 1.89
3836 10475 8.375493 TGGATAGACAATTCCTATATACCACC 57.625 38.462 0.00 0.00 32.95 4.61
3837 10476 7.959152 TGGATAGACAATTCCTATATACCACCA 59.041 37.037 0.00 0.00 32.95 4.17
3838 10477 8.478877 GGATAGACAATTCCTATATACCACCAG 58.521 40.741 0.00 0.00 0.00 4.00
3839 10478 8.974292 ATAGACAATTCCTATATACCACCAGT 57.026 34.615 0.00 0.00 0.00 4.00
3841 10480 8.974292 AGACAATTCCTATATACCACCAGTAT 57.026 34.615 0.00 0.00 44.17 2.12
3844 10483 9.268282 ACAATTCCTATATACCACCAGTATAGG 57.732 37.037 10.14 10.14 45.07 2.57
3845 10484 7.916077 ATTCCTATATACCACCAGTATAGGC 57.084 40.000 11.16 0.00 45.07 3.93
3846 10485 6.411675 TCCTATATACCACCAGTATAGGCA 57.588 41.667 11.16 1.46 45.07 4.75
3847 10486 6.993408 TCCTATATACCACCAGTATAGGCAT 58.007 40.000 11.16 0.00 45.07 4.40
3848 10487 6.839134 TCCTATATACCACCAGTATAGGCATG 59.161 42.308 11.16 0.00 45.07 4.06
3849 10488 6.611642 CCTATATACCACCAGTATAGGCATGT 59.388 42.308 5.11 0.00 45.07 3.21
3850 10489 4.891992 ATACCACCAGTATAGGCATGTC 57.108 45.455 0.00 0.00 40.01 3.06
3851 10490 1.412710 ACCACCAGTATAGGCATGTCG 59.587 52.381 0.00 0.00 0.00 4.35
3852 10491 1.412710 CCACCAGTATAGGCATGTCGT 59.587 52.381 0.00 0.00 0.00 4.34
3853 10492 2.473816 CACCAGTATAGGCATGTCGTG 58.526 52.381 0.00 0.00 0.00 4.35
3867 10506 5.281693 CATGTCGTGCTATTCAAAGTTCA 57.718 39.130 0.00 0.00 0.00 3.18
3868 10507 5.688823 CATGTCGTGCTATTCAAAGTTCAA 58.311 37.500 0.00 0.00 0.00 2.69
3869 10508 5.940192 TGTCGTGCTATTCAAAGTTCAAT 57.060 34.783 0.00 0.00 0.00 2.57
3870 10509 5.688823 TGTCGTGCTATTCAAAGTTCAATG 58.311 37.500 0.00 0.00 0.00 2.82
3871 10510 5.088739 GTCGTGCTATTCAAAGTTCAATGG 58.911 41.667 0.00 0.00 0.00 3.16
3872 10511 3.853671 CGTGCTATTCAAAGTTCAATGGC 59.146 43.478 8.23 8.23 37.09 4.40
3873 10512 4.379813 CGTGCTATTCAAAGTTCAATGGCT 60.380 41.667 13.61 0.00 37.38 4.75
3874 10513 5.163764 CGTGCTATTCAAAGTTCAATGGCTA 60.164 40.000 13.61 0.00 37.38 3.93
3875 10514 6.620678 GTGCTATTCAAAGTTCAATGGCTAA 58.379 36.000 13.61 0.00 37.38 3.09
3876 10515 7.090173 GTGCTATTCAAAGTTCAATGGCTAAA 58.910 34.615 13.61 0.00 37.38 1.85
3877 10516 7.598493 GTGCTATTCAAAGTTCAATGGCTAAAA 59.402 33.333 13.61 0.00 37.38 1.52
3878 10517 7.598493 TGCTATTCAAAGTTCAATGGCTAAAAC 59.402 33.333 13.61 0.00 37.38 2.43
3879 10518 7.598493 GCTATTCAAAGTTCAATGGCTAAAACA 59.402 33.333 8.00 0.00 34.55 2.83
3880 10519 7.951530 ATTCAAAGTTCAATGGCTAAAACAG 57.048 32.000 0.00 0.00 0.00 3.16
3881 10520 6.707440 TCAAAGTTCAATGGCTAAAACAGA 57.293 33.333 0.00 0.00 0.00 3.41
3882 10521 6.738114 TCAAAGTTCAATGGCTAAAACAGAG 58.262 36.000 0.00 0.00 0.00 3.35
3883 10522 6.321181 TCAAAGTTCAATGGCTAAAACAGAGT 59.679 34.615 0.00 0.00 0.00 3.24
3884 10523 7.500892 TCAAAGTTCAATGGCTAAAACAGAGTA 59.499 33.333 0.00 0.00 0.00 2.59
3885 10524 6.803154 AGTTCAATGGCTAAAACAGAGTAC 57.197 37.500 0.00 0.00 0.00 2.73
3886 10525 5.408604 AGTTCAATGGCTAAAACAGAGTACG 59.591 40.000 0.00 0.00 0.00 3.67
3887 10526 4.890088 TCAATGGCTAAAACAGAGTACGT 58.110 39.130 0.00 0.00 0.00 3.57
3888 10527 6.028146 TCAATGGCTAAAACAGAGTACGTA 57.972 37.500 0.00 0.00 0.00 3.57
3889 10528 5.865552 TCAATGGCTAAAACAGAGTACGTAC 59.134 40.000 18.10 18.10 0.00 3.67
3890 10529 5.656213 ATGGCTAAAACAGAGTACGTACT 57.344 39.130 27.71 27.71 39.71 2.73
3891 10530 5.458041 TGGCTAAAACAGAGTACGTACTT 57.542 39.130 27.96 14.25 36.50 2.24
3892 10531 5.846203 TGGCTAAAACAGAGTACGTACTTT 58.154 37.500 27.96 20.48 36.50 2.66
3893 10532 6.980593 TGGCTAAAACAGAGTACGTACTTTA 58.019 36.000 27.96 19.61 36.50 1.85
3894 10533 7.605449 TGGCTAAAACAGAGTACGTACTTTAT 58.395 34.615 27.96 10.58 36.50 1.40
3895 10534 8.090214 TGGCTAAAACAGAGTACGTACTTTATT 58.910 33.333 27.96 16.20 36.50 1.40
3896 10535 8.590470 GGCTAAAACAGAGTACGTACTTTATTC 58.410 37.037 27.96 15.54 36.50 1.75
3897 10536 9.132521 GCTAAAACAGAGTACGTACTTTATTCA 57.867 33.333 27.96 9.80 36.50 2.57
3911 10550 5.316327 CTTTATTCAAAGTTCAGGCCTCC 57.684 43.478 0.00 0.00 37.06 4.30
3912 10551 4.657814 TTATTCAAAGTTCAGGCCTCCT 57.342 40.909 0.00 0.00 0.00 3.69
3913 10552 3.532641 ATTCAAAGTTCAGGCCTCCTT 57.467 42.857 0.00 2.10 0.00 3.36
3914 10553 3.312736 TTCAAAGTTCAGGCCTCCTTT 57.687 42.857 0.00 9.10 0.00 3.11
3915 10554 2.586425 TCAAAGTTCAGGCCTCCTTTG 58.414 47.619 27.86 27.86 43.12 2.77
3916 10555 1.615392 CAAAGTTCAGGCCTCCTTTGG 59.385 52.381 26.91 15.99 39.87 3.28
3917 10556 0.853530 AAGTTCAGGCCTCCTTTGGT 59.146 50.000 0.00 0.00 0.00 3.67
3918 10557 0.853530 AGTTCAGGCCTCCTTTGGTT 59.146 50.000 0.00 0.00 0.00 3.67
3919 10558 1.202940 AGTTCAGGCCTCCTTTGGTTC 60.203 52.381 0.00 0.00 0.00 3.62
3920 10559 0.850100 TTCAGGCCTCCTTTGGTTCA 59.150 50.000 0.00 0.00 0.00 3.18
3921 10560 1.075601 TCAGGCCTCCTTTGGTTCAT 58.924 50.000 0.00 0.00 0.00 2.57
3922 10561 2.274542 TCAGGCCTCCTTTGGTTCATA 58.725 47.619 0.00 0.00 0.00 2.15
3923 10562 2.239654 TCAGGCCTCCTTTGGTTCATAG 59.760 50.000 0.00 0.00 0.00 2.23
3924 10563 1.064389 AGGCCTCCTTTGGTTCATAGC 60.064 52.381 0.00 0.00 0.00 2.97
3925 10564 1.393603 GCCTCCTTTGGTTCATAGCC 58.606 55.000 0.00 0.00 0.00 3.93
3926 10565 1.064389 GCCTCCTTTGGTTCATAGCCT 60.064 52.381 0.00 0.00 0.00 4.58
3927 10566 2.924421 CCTCCTTTGGTTCATAGCCTC 58.076 52.381 0.00 0.00 0.00 4.70
3928 10567 2.422093 CCTCCTTTGGTTCATAGCCTCC 60.422 54.545 0.00 0.00 0.00 4.30
3929 10568 2.507471 CTCCTTTGGTTCATAGCCTCCT 59.493 50.000 0.00 0.00 0.00 3.69
3930 10569 2.919602 TCCTTTGGTTCATAGCCTCCTT 59.080 45.455 0.00 0.00 0.00 3.36
3931 10570 3.333680 TCCTTTGGTTCATAGCCTCCTTT 59.666 43.478 0.00 0.00 0.00 3.11
3932 10571 3.445096 CCTTTGGTTCATAGCCTCCTTTG 59.555 47.826 0.00 0.00 0.00 2.77
3933 10572 2.806945 TGGTTCATAGCCTCCTTTGG 57.193 50.000 0.00 0.00 0.00 3.28
3934 10573 1.992557 TGGTTCATAGCCTCCTTTGGT 59.007 47.619 0.00 0.00 0.00 3.67
3935 10574 2.378547 TGGTTCATAGCCTCCTTTGGTT 59.621 45.455 0.00 0.00 0.00 3.67
3936 10575 3.017442 GGTTCATAGCCTCCTTTGGTTC 58.983 50.000 0.00 0.00 0.00 3.62
3937 10576 3.561313 GGTTCATAGCCTCCTTTGGTTCA 60.561 47.826 0.00 0.00 0.00 3.18
3938 10577 4.273318 GTTCATAGCCTCCTTTGGTTCAT 58.727 43.478 0.00 0.00 0.00 2.57
3939 10578 5.437060 GTTCATAGCCTCCTTTGGTTCATA 58.563 41.667 0.00 0.00 0.00 2.15
3940 10579 5.296151 TCATAGCCTCCTTTGGTTCATAG 57.704 43.478 0.00 0.00 0.00 2.23
3941 10580 4.103153 TCATAGCCTCCTTTGGTTCATAGG 59.897 45.833 0.00 0.00 34.61 2.57
3942 10581 2.562296 AGCCTCCTTTGGTTCATAGGA 58.438 47.619 6.86 6.86 38.81 2.94
3943 10582 3.126453 AGCCTCCTTTGGTTCATAGGAT 58.874 45.455 7.38 0.00 39.94 3.24
3944 10583 4.307259 AGCCTCCTTTGGTTCATAGGATA 58.693 43.478 7.38 0.00 39.94 2.59
3945 10584 4.349342 AGCCTCCTTTGGTTCATAGGATAG 59.651 45.833 7.38 4.66 39.94 2.08
3946 10585 4.348168 GCCTCCTTTGGTTCATAGGATAGA 59.652 45.833 7.38 0.00 39.94 1.98
3947 10586 5.163195 GCCTCCTTTGGTTCATAGGATAGAA 60.163 44.000 7.38 0.00 39.94 2.10
3948 10587 6.634955 GCCTCCTTTGGTTCATAGGATAGAAA 60.635 42.308 7.38 0.00 39.94 2.52
3949 10588 7.521669 CCTCCTTTGGTTCATAGGATAGAAAT 58.478 38.462 7.38 0.00 39.94 2.17
3950 10589 7.446625 CCTCCTTTGGTTCATAGGATAGAAATG 59.553 40.741 7.38 0.00 39.94 2.32
3951 10590 7.872138 TCCTTTGGTTCATAGGATAGAAATGT 58.128 34.615 3.54 0.00 36.84 2.71
3952 10591 8.336235 TCCTTTGGTTCATAGGATAGAAATGTT 58.664 33.333 3.54 0.00 36.84 2.71
3953 10592 8.408601 CCTTTGGTTCATAGGATAGAAATGTTG 58.591 37.037 0.00 0.00 35.14 3.33
3954 10593 6.942532 TGGTTCATAGGATAGAAATGTTGC 57.057 37.500 0.00 0.00 0.00 4.17
3955 10594 6.422333 TGGTTCATAGGATAGAAATGTTGCA 58.578 36.000 0.00 0.00 0.00 4.08
3956 10595 6.543465 TGGTTCATAGGATAGAAATGTTGCAG 59.457 38.462 0.00 0.00 0.00 4.41
3957 10596 6.016777 GGTTCATAGGATAGAAATGTTGCAGG 60.017 42.308 0.00 0.00 0.00 4.85
3958 10597 6.499106 TCATAGGATAGAAATGTTGCAGGA 57.501 37.500 0.00 0.00 0.00 3.86
3959 10598 6.899089 TCATAGGATAGAAATGTTGCAGGAA 58.101 36.000 0.00 0.00 0.00 3.36
3960 10599 7.520798 TCATAGGATAGAAATGTTGCAGGAAT 58.479 34.615 0.00 0.00 0.00 3.01
3961 10600 8.659527 TCATAGGATAGAAATGTTGCAGGAATA 58.340 33.333 0.00 0.00 0.00 1.75
3962 10601 8.944029 CATAGGATAGAAATGTTGCAGGAATAG 58.056 37.037 0.00 0.00 0.00 1.73
3963 10602 6.302269 AGGATAGAAATGTTGCAGGAATAGG 58.698 40.000 0.00 0.00 0.00 2.57
3964 10603 6.101734 AGGATAGAAATGTTGCAGGAATAGGA 59.898 38.462 0.00 0.00 0.00 2.94
3965 10604 6.772716 GGATAGAAATGTTGCAGGAATAGGAA 59.227 38.462 0.00 0.00 0.00 3.36
3966 10605 7.285401 GGATAGAAATGTTGCAGGAATAGGAAA 59.715 37.037 0.00 0.00 0.00 3.13
3967 10606 6.916360 AGAAATGTTGCAGGAATAGGAAAA 57.084 33.333 0.00 0.00 0.00 2.29
3968 10607 7.486407 AGAAATGTTGCAGGAATAGGAAAAT 57.514 32.000 0.00 0.00 0.00 1.82
3969 10608 7.550712 AGAAATGTTGCAGGAATAGGAAAATC 58.449 34.615 0.00 0.00 0.00 2.17
3970 10609 6.855763 AATGTTGCAGGAATAGGAAAATCA 57.144 33.333 0.00 0.00 0.00 2.57
3971 10610 7.427989 AATGTTGCAGGAATAGGAAAATCAT 57.572 32.000 0.00 0.00 0.00 2.45
3972 10611 8.537728 AATGTTGCAGGAATAGGAAAATCATA 57.462 30.769 0.00 0.00 0.00 2.15
3973 10612 7.572523 TGTTGCAGGAATAGGAAAATCATAG 57.427 36.000 0.00 0.00 0.00 2.23
3974 10613 6.547141 TGTTGCAGGAATAGGAAAATCATAGG 59.453 38.462 0.00 0.00 0.00 2.57
3975 10614 6.514012 TGCAGGAATAGGAAAATCATAGGA 57.486 37.500 0.00 0.00 0.00 2.94
3976 10615 6.910191 TGCAGGAATAGGAAAATCATAGGAA 58.090 36.000 0.00 0.00 0.00 3.36
3977 10616 7.000472 TGCAGGAATAGGAAAATCATAGGAAG 59.000 38.462 0.00 0.00 0.00 3.46
3978 10617 7.001073 GCAGGAATAGGAAAATCATAGGAAGT 58.999 38.462 0.00 0.00 0.00 3.01
3979 10618 7.040823 GCAGGAATAGGAAAATCATAGGAAGTG 60.041 40.741 0.00 0.00 0.00 3.16
3980 10619 8.213679 CAGGAATAGGAAAATCATAGGAAGTGA 58.786 37.037 0.00 0.00 0.00 3.41
3981 10620 8.435982 AGGAATAGGAAAATCATAGGAAGTGAG 58.564 37.037 0.00 0.00 0.00 3.51
3982 10621 8.432805 GGAATAGGAAAATCATAGGAAGTGAGA 58.567 37.037 0.00 0.00 0.00 3.27
3984 10623 9.790344 AATAGGAAAATCATAGGAAGTGAGATG 57.210 33.333 0.00 0.00 0.00 2.90
3985 10624 7.443302 AGGAAAATCATAGGAAGTGAGATGA 57.557 36.000 0.00 0.00 33.09 2.92
3986 10625 7.278875 AGGAAAATCATAGGAAGTGAGATGAC 58.721 38.462 0.00 0.00 31.41 3.06
3987 10626 7.050377 GGAAAATCATAGGAAGTGAGATGACA 58.950 38.462 0.00 0.00 31.41 3.58
3988 10627 7.718753 GGAAAATCATAGGAAGTGAGATGACAT 59.281 37.037 0.00 0.00 31.41 3.06
3989 10628 8.447924 AAAATCATAGGAAGTGAGATGACATG 57.552 34.615 0.00 0.00 31.41 3.21
3990 10629 4.953667 TCATAGGAAGTGAGATGACATGC 58.046 43.478 0.00 0.00 0.00 4.06
3991 10630 4.406649 TCATAGGAAGTGAGATGACATGCA 59.593 41.667 0.00 0.00 0.00 3.96
3992 10631 3.928005 AGGAAGTGAGATGACATGCAT 57.072 42.857 0.00 0.00 40.77 3.96
4007 10646 7.307131 TGACATGCATCTCAATTCCTATAGA 57.693 36.000 1.73 0.00 0.00 1.98
4008 10647 7.384477 TGACATGCATCTCAATTCCTATAGAG 58.616 38.462 1.73 0.00 0.00 2.43
4009 10648 7.234166 TGACATGCATCTCAATTCCTATAGAGA 59.766 37.037 1.73 0.00 40.96 3.10
4010 10649 7.971201 ACATGCATCTCAATTCCTATAGAGAA 58.029 34.615 0.00 3.84 40.19 2.87
4011 10650 8.435187 ACATGCATCTCAATTCCTATAGAGAAA 58.565 33.333 0.00 0.00 40.19 2.52
4012 10651 8.937884 CATGCATCTCAATTCCTATAGAGAAAG 58.062 37.037 0.00 1.90 40.19 2.62
4013 10652 8.255111 TGCATCTCAATTCCTATAGAGAAAGA 57.745 34.615 0.00 4.31 40.19 2.52
4014 10653 8.366401 TGCATCTCAATTCCTATAGAGAAAGAG 58.634 37.037 18.33 18.33 40.19 2.85
4015 10654 8.584157 GCATCTCAATTCCTATAGAGAAAGAGA 58.416 37.037 23.11 23.11 40.19 3.10
4018 10657 9.653516 TCTCAATTCCTATAGAGAAAGAGATGT 57.346 33.333 20.46 2.79 35.41 3.06
4019 10658 9.912634 CTCAATTCCTATAGAGAAAGAGATGTC 57.087 37.037 18.93 0.00 34.18 3.06
4020 10659 9.426534 TCAATTCCTATAGAGAAAGAGATGTCA 57.573 33.333 0.00 0.00 0.00 3.58
4025 10664 9.426534 TCCTATAGAGAAAGAGATGTCATTTGA 57.573 33.333 0.00 0.00 0.00 2.69
4028 10667 6.680874 AGAGAAAGAGATGTCATTTGATGC 57.319 37.500 0.00 0.00 0.00 3.91
4029 10668 6.178324 AGAGAAAGAGATGTCATTTGATGCA 58.822 36.000 0.00 0.00 0.00 3.96
4030 10669 6.829298 AGAGAAAGAGATGTCATTTGATGCAT 59.171 34.615 0.00 0.00 32.43 3.96
4031 10670 7.991460 AGAGAAAGAGATGTCATTTGATGCATA 59.009 33.333 0.00 0.00 30.80 3.14
4032 10671 8.155821 AGAAAGAGATGTCATTTGATGCATAG 57.844 34.615 0.00 0.00 30.80 2.23
4033 10672 6.879276 AAGAGATGTCATTTGATGCATAGG 57.121 37.500 0.00 0.00 30.80 2.57
4034 10673 6.183810 AGAGATGTCATTTGATGCATAGGA 57.816 37.500 0.00 0.00 30.80 2.94
4035 10674 6.780901 AGAGATGTCATTTGATGCATAGGAT 58.219 36.000 0.00 0.00 30.80 3.24
4036 10675 7.914859 AGAGATGTCATTTGATGCATAGGATA 58.085 34.615 0.00 0.00 30.80 2.59
4037 10676 8.041919 AGAGATGTCATTTGATGCATAGGATAG 58.958 37.037 0.00 0.00 30.80 2.08
4038 10677 7.110810 AGATGTCATTTGATGCATAGGATAGG 58.889 38.462 0.00 0.00 30.80 2.57
4039 10678 6.438186 TGTCATTTGATGCATAGGATAGGA 57.562 37.500 0.00 0.00 0.00 2.94
4040 10679 6.840527 TGTCATTTGATGCATAGGATAGGAA 58.159 36.000 0.00 0.00 0.00 3.36
4041 10680 7.464273 TGTCATTTGATGCATAGGATAGGAAT 58.536 34.615 0.00 0.00 0.00 3.01
4042 10681 7.946219 TGTCATTTGATGCATAGGATAGGAATT 59.054 33.333 0.00 0.00 0.00 2.17
4043 10682 8.800332 GTCATTTGATGCATAGGATAGGAATTT 58.200 33.333 0.00 0.00 0.00 1.82
4044 10683 9.370930 TCATTTGATGCATAGGATAGGAATTTT 57.629 29.630 0.00 0.00 0.00 1.82
4045 10684 9.991906 CATTTGATGCATAGGATAGGAATTTTT 57.008 29.630 0.00 0.00 0.00 1.94
4061 10700 5.811588 GAATTTTTCCATCGAGTCTTAGGC 58.188 41.667 0.00 0.00 0.00 3.93
4062 10701 2.981859 TTTCCATCGAGTCTTAGGCC 57.018 50.000 0.00 0.00 0.00 5.19
4063 10702 2.160721 TTCCATCGAGTCTTAGGCCT 57.839 50.000 11.78 11.78 0.00 5.19
4064 10703 2.160721 TCCATCGAGTCTTAGGCCTT 57.839 50.000 12.58 0.00 0.00 4.35
4065 10704 2.032620 TCCATCGAGTCTTAGGCCTTC 58.967 52.381 12.58 0.00 0.00 3.46
4066 10705 2.035632 CCATCGAGTCTTAGGCCTTCT 58.964 52.381 12.58 4.71 0.00 2.85
4067 10706 2.432510 CCATCGAGTCTTAGGCCTTCTT 59.567 50.000 12.58 0.00 0.00 2.52
4068 10707 3.118592 CCATCGAGTCTTAGGCCTTCTTT 60.119 47.826 12.58 0.00 0.00 2.52
4069 10708 3.594603 TCGAGTCTTAGGCCTTCTTTG 57.405 47.619 12.58 0.00 0.00 2.77
4070 10709 2.233922 TCGAGTCTTAGGCCTTCTTTGG 59.766 50.000 12.58 0.00 0.00 3.28
4071 10710 2.028020 CGAGTCTTAGGCCTTCTTTGGT 60.028 50.000 12.58 0.00 0.00 3.67
4072 10711 3.557264 CGAGTCTTAGGCCTTCTTTGGTT 60.557 47.826 12.58 0.00 0.00 3.67
4073 10712 4.004314 GAGTCTTAGGCCTTCTTTGGTTC 58.996 47.826 12.58 0.00 0.00 3.62
4074 10713 3.082548 GTCTTAGGCCTTCTTTGGTTCC 58.917 50.000 12.58 0.00 0.00 3.62
4075 10714 2.986728 TCTTAGGCCTTCTTTGGTTCCT 59.013 45.455 12.58 0.00 0.00 3.36
4076 10715 3.397955 TCTTAGGCCTTCTTTGGTTCCTT 59.602 43.478 12.58 0.00 0.00 3.36
4077 10716 2.775490 AGGCCTTCTTTGGTTCCTTT 57.225 45.000 0.00 0.00 0.00 3.11
4078 10717 2.319844 AGGCCTTCTTTGGTTCCTTTG 58.680 47.619 0.00 0.00 0.00 2.77
4079 10718 2.091333 AGGCCTTCTTTGGTTCCTTTGA 60.091 45.455 0.00 0.00 0.00 2.69
4080 10719 2.698274 GGCCTTCTTTGGTTCCTTTGAA 59.302 45.455 0.00 0.00 0.00 2.69
4081 10720 3.243873 GGCCTTCTTTGGTTCCTTTGAAG 60.244 47.826 0.00 0.00 0.00 3.02
4082 10721 3.800261 GCCTTCTTTGGTTCCTTTGAAGC 60.800 47.826 0.00 0.00 46.70 3.86
4083 10722 3.243873 CCTTCTTTGGTTCCTTTGAAGCC 60.244 47.826 2.46 0.00 46.12 4.35
4084 10723 2.316108 TCTTTGGTTCCTTTGAAGCCC 58.684 47.619 2.46 0.00 46.12 5.19
4085 10724 2.091333 TCTTTGGTTCCTTTGAAGCCCT 60.091 45.455 2.46 0.00 46.12 5.19
4086 10725 2.470057 TTGGTTCCTTTGAAGCCCTT 57.530 45.000 2.46 0.00 46.12 3.95
4087 10726 2.470057 TGGTTCCTTTGAAGCCCTTT 57.530 45.000 2.46 0.00 46.12 3.11
4088 10727 2.038659 TGGTTCCTTTGAAGCCCTTTG 58.961 47.619 2.46 0.00 46.12 2.77
4089 10728 2.316108 GGTTCCTTTGAAGCCCTTTGA 58.684 47.619 0.00 0.00 41.96 2.69
4090 10729 2.899900 GGTTCCTTTGAAGCCCTTTGAT 59.100 45.455 0.00 0.00 41.96 2.57
4091 10730 3.324846 GGTTCCTTTGAAGCCCTTTGATT 59.675 43.478 0.00 0.00 41.96 2.57
4092 10731 4.202357 GGTTCCTTTGAAGCCCTTTGATTT 60.202 41.667 0.00 0.00 41.96 2.17
4093 10732 4.605640 TCCTTTGAAGCCCTTTGATTTG 57.394 40.909 0.00 0.00 0.00 2.32
4094 10733 3.966665 TCCTTTGAAGCCCTTTGATTTGT 59.033 39.130 0.00 0.00 0.00 2.83
4095 10734 5.144100 TCCTTTGAAGCCCTTTGATTTGTA 58.856 37.500 0.00 0.00 0.00 2.41
4096 10735 5.243730 TCCTTTGAAGCCCTTTGATTTGTAG 59.756 40.000 0.00 0.00 0.00 2.74
4097 10736 5.467035 TTTGAAGCCCTTTGATTTGTAGG 57.533 39.130 0.00 0.00 0.00 3.18
4098 10737 4.380843 TGAAGCCCTTTGATTTGTAGGA 57.619 40.909 0.00 0.00 0.00 2.94
4099 10738 4.735369 TGAAGCCCTTTGATTTGTAGGAA 58.265 39.130 0.00 0.00 0.00 3.36
4100 10739 5.332743 TGAAGCCCTTTGATTTGTAGGAAT 58.667 37.500 0.00 0.00 0.00 3.01
4101 10740 5.185635 TGAAGCCCTTTGATTTGTAGGAATG 59.814 40.000 0.00 0.00 0.00 2.67
4102 10741 4.026052 AGCCCTTTGATTTGTAGGAATGG 58.974 43.478 0.00 0.00 0.00 3.16
4103 10742 4.023291 GCCCTTTGATTTGTAGGAATGGA 58.977 43.478 0.00 0.00 0.00 3.41
4104 10743 4.651045 GCCCTTTGATTTGTAGGAATGGAT 59.349 41.667 0.00 0.00 0.00 3.41
4105 10744 5.129320 GCCCTTTGATTTGTAGGAATGGATT 59.871 40.000 0.00 0.00 0.00 3.01
4106 10745 6.683861 GCCCTTTGATTTGTAGGAATGGATTC 60.684 42.308 0.00 0.00 36.08 2.52
4147 10786 3.920412 GGAATCAATCCTTCACGTTTTGC 59.080 43.478 0.00 0.00 45.56 3.68
4148 10787 4.545610 GAATCAATCCTTCACGTTTTGCA 58.454 39.130 0.00 0.00 0.00 4.08
4149 10788 3.624326 TCAATCCTTCACGTTTTGCAG 57.376 42.857 0.00 0.00 0.00 4.41
4150 10789 2.293122 TCAATCCTTCACGTTTTGCAGG 59.707 45.455 0.00 0.00 39.89 4.85
4151 10790 3.790691 TCCTTCACGTTTTGCAGGA 57.209 47.368 0.00 0.00 44.61 3.86
4152 10791 2.045561 TCCTTCACGTTTTGCAGGAA 57.954 45.000 0.00 0.00 43.93 3.36
4153 10792 2.370349 TCCTTCACGTTTTGCAGGAAA 58.630 42.857 0.00 0.00 43.93 3.13
4154 10793 2.755655 TCCTTCACGTTTTGCAGGAAAA 59.244 40.909 0.00 0.00 43.93 2.29
4155 10794 3.193691 TCCTTCACGTTTTGCAGGAAAAA 59.806 39.130 0.73 0.00 43.93 1.94
4177 10816 5.649782 AAAACATTAGCCTGGACTCAATG 57.350 39.130 0.00 3.37 33.75 2.82
4178 10817 4.574674 AACATTAGCCTGGACTCAATGA 57.425 40.909 0.00 0.00 32.29 2.57
4179 10818 4.574674 ACATTAGCCTGGACTCAATGAA 57.425 40.909 0.00 0.00 32.29 2.57
4180 10819 4.922206 ACATTAGCCTGGACTCAATGAAA 58.078 39.130 0.00 0.00 32.29 2.69
4181 10820 5.324409 ACATTAGCCTGGACTCAATGAAAA 58.676 37.500 0.00 0.00 32.29 2.29
4182 10821 5.774690 ACATTAGCCTGGACTCAATGAAAAA 59.225 36.000 0.00 0.00 32.29 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
393 394 5.140454 AGCAAGTTTTCCCATTGAACTAGT 58.860 37.500 0.00 0.00 33.54 2.57
416 417 1.275291 CCCAAGAAGCTTCGTCAGGTA 59.725 52.381 20.43 0.00 30.90 3.08
445 446 6.401796 GCAGGAAATGTTTTCTTCATGAATGC 60.402 38.462 8.96 7.29 35.83 3.56
514 515 5.054477 CCAAAAACGAACTTGTCCTCTAGA 58.946 41.667 0.00 0.00 0.00 2.43
562 563 3.202906 TGCTGGACACTTGTAACTGAAC 58.797 45.455 0.00 0.00 0.00 3.18
599 600 3.418094 CGTTAGATAGATCGATCGTGGC 58.582 50.000 19.33 10.46 0.00 5.01
683 684 0.389948 CGGGTGACAGCTACAGGAAC 60.390 60.000 4.38 0.00 0.00 3.62
806 807 1.624391 GGGAAAGTAGCCCCACTAGGA 60.624 57.143 0.00 0.00 42.24 2.94
879 880 0.907704 ATTGGTCACACCCTAGCGGA 60.908 55.000 4.45 0.00 37.50 5.54
882 883 2.200373 AACATTGGTCACACCCTAGC 57.800 50.000 0.00 0.00 37.50 3.42
895 896 2.030007 ACATTGGTCGCCTCAAACATTG 60.030 45.455 0.00 0.00 0.00 2.82
896 897 2.238521 ACATTGGTCGCCTCAAACATT 58.761 42.857 0.00 0.00 0.00 2.71
897 898 1.909700 ACATTGGTCGCCTCAAACAT 58.090 45.000 0.00 0.00 0.00 2.71
898 899 1.686355 AACATTGGTCGCCTCAAACA 58.314 45.000 0.00 0.00 0.00 2.83
899 900 2.793278 AAACATTGGTCGCCTCAAAC 57.207 45.000 0.00 0.00 0.00 2.93
900 901 3.810310 AAAAACATTGGTCGCCTCAAA 57.190 38.095 0.00 0.00 0.00 2.69
1368 1393 1.228894 ACGCCTCTCCCTGTTGAGA 60.229 57.895 0.00 0.00 39.04 3.27
1507 1535 4.687215 GCTCGAGTGGCAGGCACA 62.687 66.667 27.63 7.63 0.00 4.57
1554 1582 1.134818 ACGGCTTCATTATCGTGCTCA 60.135 47.619 0.00 0.00 34.40 4.26
1695 1730 3.016736 GCTATGCCTCTTAAGCAACCAA 58.983 45.455 0.00 0.00 44.83 3.67
1822 2609 1.952296 CAAAGCAGAGAAGCCAACACT 59.048 47.619 0.00 0.00 34.23 3.55
1863 6395 2.355115 GGTTGGTGGTAGCAGGGG 59.645 66.667 0.00 0.00 0.00 4.79
1926 6461 2.102252 GCATTTCCTCAACACCCAAACA 59.898 45.455 0.00 0.00 0.00 2.83
1946 6481 2.746362 AGTAGCTTCTGCAGTTCAATGC 59.254 45.455 14.67 8.18 46.68 3.56
2012 6547 4.466827 TGCATGAACATCCTCAGCATAAT 58.533 39.130 0.00 0.00 29.99 1.28
2140 6686 7.148239 CCAACAGTTACCTTCATCATAGAAACC 60.148 40.741 0.00 0.00 0.00 3.27
2289 6849 3.936453 GCACATTACCATGGTAGTTTCGA 59.064 43.478 23.40 9.32 34.27 3.71
2306 6866 8.511604 AGCAGTATAAAAGAACAATAGCACAT 57.488 30.769 0.00 0.00 0.00 3.21
2310 6870 9.869844 CATGTAGCAGTATAAAAGAACAATAGC 57.130 33.333 0.00 0.00 0.00 2.97
2467 8689 7.438459 GTCCAATATGACCTGACAGTATTGTAC 59.562 40.741 16.40 10.73 37.76 2.90
2468 8690 7.344612 AGTCCAATATGACCTGACAGTATTGTA 59.655 37.037 16.40 4.65 35.17 2.41
2470 8692 6.586344 AGTCCAATATGACCTGACAGTATTG 58.414 40.000 13.06 13.06 35.83 1.90
2472 8694 6.814954 AAGTCCAATATGACCTGACAGTAT 57.185 37.500 0.93 0.00 35.83 2.12
2489 8712 6.758806 ACTAGTTTCTCCCTTAAAAGTCCA 57.241 37.500 0.00 0.00 0.00 4.02
2530 8756 1.881973 TCAAGCTGGTGCAGAAATCAC 59.118 47.619 0.00 0.00 42.74 3.06
3159 9594 2.154462 ACTGATACCTGTGCACAAAGC 58.846 47.619 21.98 12.41 45.96 3.51
3189 9624 6.039493 TGCAGTATACCAGTAAGCTACTTCTC 59.961 42.308 0.00 0.00 36.76 2.87
3333 9854 4.697352 GGTATTTCAGAGTGCAGTTGACAT 59.303 41.667 0.00 3.52 0.00 3.06
3334 9855 4.065088 GGTATTTCAGAGTGCAGTTGACA 58.935 43.478 0.00 0.00 0.00 3.58
3463 9986 2.685387 CTATGCCACCGCGAGAGGAC 62.685 65.000 8.23 3.49 38.08 3.85
3521 10044 2.341257 CATATCGTCAGCTATGCCCAC 58.659 52.381 0.00 0.00 0.00 4.61
3590 10227 3.506096 CTCACCGCCATGCTGCAG 61.506 66.667 10.11 10.11 0.00 4.41
3630 10267 1.281925 ATGGTGGTAGAAGCCCAGGG 61.282 60.000 0.00 0.00 31.13 4.45
3661 10298 1.152756 ACCACCAGTCCCTTTGCAC 60.153 57.895 0.00 0.00 0.00 4.57
3674 10311 6.880942 TTAACTGGTACATAAAACACCACC 57.119 37.500 0.00 0.00 37.42 4.61
3676 10314 8.915036 ACAATTTAACTGGTACATAAAACACCA 58.085 29.630 0.00 0.00 40.01 4.17
3685 10323 8.458843 GCTAATGACACAATTTAACTGGTACAT 58.541 33.333 0.00 0.00 38.20 2.29
3714 10352 6.986231 GGACTTTTGATTGGTTCTTGTCAAAT 59.014 34.615 0.00 0.00 39.48 2.32
3718 10357 5.067805 ACAGGACTTTTGATTGGTTCTTGTC 59.932 40.000 0.00 0.00 0.00 3.18
3719 10358 4.956075 ACAGGACTTTTGATTGGTTCTTGT 59.044 37.500 0.00 0.00 0.00 3.16
3723 10362 6.389906 CCATTACAGGACTTTTGATTGGTTC 58.610 40.000 0.00 0.00 0.00 3.62
3758 10397 8.081025 CCCTACTTATACGAAGGAATTGTCTAC 58.919 40.741 0.00 0.00 0.00 2.59
3831 10470 1.412710 CGACATGCCTATACTGGTGGT 59.587 52.381 0.00 0.00 0.00 4.16
3832 10471 1.412710 ACGACATGCCTATACTGGTGG 59.587 52.381 0.00 0.00 0.00 4.61
3833 10472 2.473816 CACGACATGCCTATACTGGTG 58.526 52.381 0.00 0.00 0.00 4.17
3834 10473 2.890808 CACGACATGCCTATACTGGT 57.109 50.000 0.00 0.00 0.00 4.00
3845 10484 5.281693 TGAACTTTGAATAGCACGACATG 57.718 39.130 0.00 0.00 0.00 3.21
3846 10485 5.940192 TTGAACTTTGAATAGCACGACAT 57.060 34.783 0.00 0.00 0.00 3.06
3847 10486 5.334802 CCATTGAACTTTGAATAGCACGACA 60.335 40.000 0.00 0.00 0.00 4.35
3848 10487 5.088739 CCATTGAACTTTGAATAGCACGAC 58.911 41.667 0.00 0.00 0.00 4.34
3849 10488 4.379394 GCCATTGAACTTTGAATAGCACGA 60.379 41.667 0.00 0.00 0.00 4.35
3850 10489 3.853671 GCCATTGAACTTTGAATAGCACG 59.146 43.478 0.00 0.00 0.00 5.34
3851 10490 5.064441 AGCCATTGAACTTTGAATAGCAC 57.936 39.130 0.00 0.00 0.00 4.40
3852 10491 6.832520 TTAGCCATTGAACTTTGAATAGCA 57.167 33.333 0.00 0.00 0.00 3.49
3853 10492 7.598493 TGTTTTAGCCATTGAACTTTGAATAGC 59.402 33.333 0.00 0.00 0.00 2.97
3854 10493 9.132521 CTGTTTTAGCCATTGAACTTTGAATAG 57.867 33.333 0.00 0.00 0.00 1.73
3855 10494 8.855110 TCTGTTTTAGCCATTGAACTTTGAATA 58.145 29.630 0.00 0.00 0.00 1.75
3856 10495 7.725251 TCTGTTTTAGCCATTGAACTTTGAAT 58.275 30.769 0.00 0.00 0.00 2.57
3857 10496 7.106439 TCTGTTTTAGCCATTGAACTTTGAA 57.894 32.000 0.00 0.00 0.00 2.69
3858 10497 6.321181 ACTCTGTTTTAGCCATTGAACTTTGA 59.679 34.615 0.00 0.00 0.00 2.69
3859 10498 6.507023 ACTCTGTTTTAGCCATTGAACTTTG 58.493 36.000 0.00 0.00 0.00 2.77
3860 10499 6.715347 ACTCTGTTTTAGCCATTGAACTTT 57.285 33.333 0.00 0.00 0.00 2.66
3861 10500 6.073222 CGTACTCTGTTTTAGCCATTGAACTT 60.073 38.462 0.00 0.00 0.00 2.66
3862 10501 5.408604 CGTACTCTGTTTTAGCCATTGAACT 59.591 40.000 0.00 0.00 0.00 3.01
3863 10502 5.178809 ACGTACTCTGTTTTAGCCATTGAAC 59.821 40.000 0.00 0.00 0.00 3.18
3864 10503 5.302360 ACGTACTCTGTTTTAGCCATTGAA 58.698 37.500 0.00 0.00 0.00 2.69
3865 10504 4.890088 ACGTACTCTGTTTTAGCCATTGA 58.110 39.130 0.00 0.00 0.00 2.57
3866 10505 5.867716 AGTACGTACTCTGTTTTAGCCATTG 59.132 40.000 22.45 0.00 0.00 2.82
3867 10506 6.034161 AGTACGTACTCTGTTTTAGCCATT 57.966 37.500 22.45 0.00 0.00 3.16
3868 10507 5.656213 AGTACGTACTCTGTTTTAGCCAT 57.344 39.130 22.45 0.00 0.00 4.40
3869 10508 5.458041 AAGTACGTACTCTGTTTTAGCCA 57.542 39.130 27.51 0.00 34.99 4.75
3870 10509 8.471361 AATAAAGTACGTACTCTGTTTTAGCC 57.529 34.615 27.51 0.00 34.99 3.93
3871 10510 9.132521 TGAATAAAGTACGTACTCTGTTTTAGC 57.867 33.333 27.51 16.59 34.99 3.09
3886 10525 8.228952 AGGAGGCCTGAACTTTGAATAAAGTAC 61.229 40.741 12.00 0.00 43.25 2.73
3887 10526 6.240176 AGGAGGCCTGAACTTTGAATAAAGTA 60.240 38.462 12.00 0.00 43.25 2.24
3888 10527 5.458215 AGGAGGCCTGAACTTTGAATAAAGT 60.458 40.000 12.00 0.00 44.62 2.66
3889 10528 5.012893 AGGAGGCCTGAACTTTGAATAAAG 58.987 41.667 12.00 0.00 39.97 1.85
3890 10529 4.998051 AGGAGGCCTGAACTTTGAATAAA 58.002 39.130 12.00 0.00 29.57 1.40
3891 10530 4.657814 AGGAGGCCTGAACTTTGAATAA 57.342 40.909 12.00 0.00 29.57 1.40
3892 10531 4.657814 AAGGAGGCCTGAACTTTGAATA 57.342 40.909 12.00 0.00 32.13 1.75
3893 10532 3.532641 AAGGAGGCCTGAACTTTGAAT 57.467 42.857 12.00 0.00 32.13 2.57
3894 10533 3.312736 AAAGGAGGCCTGAACTTTGAA 57.687 42.857 12.00 0.00 32.13 2.69
3896 10535 1.615392 CCAAAGGAGGCCTGAACTTTG 59.385 52.381 29.71 29.71 45.64 2.77
3897 10536 1.217942 ACCAAAGGAGGCCTGAACTTT 59.782 47.619 12.00 15.33 32.13 2.66
3898 10537 0.853530 ACCAAAGGAGGCCTGAACTT 59.146 50.000 12.00 9.29 32.13 2.66
3899 10538 0.853530 AACCAAAGGAGGCCTGAACT 59.146 50.000 12.00 1.81 32.13 3.01
3900 10539 1.248486 GAACCAAAGGAGGCCTGAAC 58.752 55.000 12.00 0.00 32.13 3.18
3901 10540 0.850100 TGAACCAAAGGAGGCCTGAA 59.150 50.000 12.00 0.00 32.13 3.02
3902 10541 1.075601 ATGAACCAAAGGAGGCCTGA 58.924 50.000 12.00 0.00 32.13 3.86
3903 10542 2.648059 CTATGAACCAAAGGAGGCCTG 58.352 52.381 12.00 0.00 32.13 4.85
3904 10543 1.064389 GCTATGAACCAAAGGAGGCCT 60.064 52.381 3.86 3.86 33.87 5.19
3905 10544 1.393603 GCTATGAACCAAAGGAGGCC 58.606 55.000 0.00 0.00 0.00 5.19
3906 10545 1.064389 AGGCTATGAACCAAAGGAGGC 60.064 52.381 0.00 0.00 0.00 4.70
3907 10546 2.422093 GGAGGCTATGAACCAAAGGAGG 60.422 54.545 0.00 0.00 0.00 4.30
3908 10547 2.507471 AGGAGGCTATGAACCAAAGGAG 59.493 50.000 0.00 0.00 0.00 3.69
3909 10548 2.562296 AGGAGGCTATGAACCAAAGGA 58.438 47.619 0.00 0.00 0.00 3.36
3910 10549 3.372440 AAGGAGGCTATGAACCAAAGG 57.628 47.619 0.00 0.00 0.00 3.11
3911 10550 3.445096 CCAAAGGAGGCTATGAACCAAAG 59.555 47.826 0.00 0.00 0.00 2.77
3912 10551 3.181423 ACCAAAGGAGGCTATGAACCAAA 60.181 43.478 0.00 0.00 0.00 3.28
3913 10552 2.378547 ACCAAAGGAGGCTATGAACCAA 59.621 45.455 0.00 0.00 0.00 3.67
3914 10553 1.992557 ACCAAAGGAGGCTATGAACCA 59.007 47.619 0.00 0.00 0.00 3.67
3915 10554 2.808906 ACCAAAGGAGGCTATGAACC 57.191 50.000 0.00 0.00 0.00 3.62
3916 10555 3.686016 TGAACCAAAGGAGGCTATGAAC 58.314 45.455 0.00 0.00 0.00 3.18
3917 10556 4.591321 ATGAACCAAAGGAGGCTATGAA 57.409 40.909 0.00 0.00 0.00 2.57
3918 10557 4.103153 CCTATGAACCAAAGGAGGCTATGA 59.897 45.833 0.00 0.00 31.64 2.15
3919 10558 4.103153 TCCTATGAACCAAAGGAGGCTATG 59.897 45.833 0.00 0.00 34.46 2.23
3920 10559 4.307259 TCCTATGAACCAAAGGAGGCTAT 58.693 43.478 0.00 0.00 34.46 2.97
3921 10560 3.731431 TCCTATGAACCAAAGGAGGCTA 58.269 45.455 0.00 0.00 34.46 3.93
3922 10561 2.562296 TCCTATGAACCAAAGGAGGCT 58.438 47.619 0.00 0.00 34.46 4.58
3923 10562 3.584733 ATCCTATGAACCAAAGGAGGC 57.415 47.619 0.00 0.00 42.53 4.70
3924 10563 6.500589 TTCTATCCTATGAACCAAAGGAGG 57.499 41.667 0.00 0.00 42.53 4.30
3925 10564 7.995488 ACATTTCTATCCTATGAACCAAAGGAG 59.005 37.037 0.00 0.00 42.53 3.69
3926 10565 7.872138 ACATTTCTATCCTATGAACCAAAGGA 58.128 34.615 0.00 0.00 43.38 3.36
3927 10566 8.408601 CAACATTTCTATCCTATGAACCAAAGG 58.591 37.037 0.00 0.00 0.00 3.11
3928 10567 7.917505 GCAACATTTCTATCCTATGAACCAAAG 59.082 37.037 0.00 0.00 0.00 2.77
3929 10568 7.395772 TGCAACATTTCTATCCTATGAACCAAA 59.604 33.333 0.00 0.00 0.00 3.28
3930 10569 6.889177 TGCAACATTTCTATCCTATGAACCAA 59.111 34.615 0.00 0.00 0.00 3.67
3931 10570 6.422333 TGCAACATTTCTATCCTATGAACCA 58.578 36.000 0.00 0.00 0.00 3.67
3932 10571 6.016777 CCTGCAACATTTCTATCCTATGAACC 60.017 42.308 0.00 0.00 0.00 3.62
3933 10572 6.767902 TCCTGCAACATTTCTATCCTATGAAC 59.232 38.462 0.00 0.00 0.00 3.18
3934 10573 6.899089 TCCTGCAACATTTCTATCCTATGAA 58.101 36.000 0.00 0.00 0.00 2.57
3935 10574 6.499106 TCCTGCAACATTTCTATCCTATGA 57.501 37.500 0.00 0.00 0.00 2.15
3936 10575 7.756395 ATTCCTGCAACATTTCTATCCTATG 57.244 36.000 0.00 0.00 0.00 2.23
3937 10576 8.105829 CCTATTCCTGCAACATTTCTATCCTAT 58.894 37.037 0.00 0.00 0.00 2.57
3938 10577 7.292356 TCCTATTCCTGCAACATTTCTATCCTA 59.708 37.037 0.00 0.00 0.00 2.94
3939 10578 6.101734 TCCTATTCCTGCAACATTTCTATCCT 59.898 38.462 0.00 0.00 0.00 3.24
3940 10579 6.299141 TCCTATTCCTGCAACATTTCTATCC 58.701 40.000 0.00 0.00 0.00 2.59
3941 10580 7.807977 TTCCTATTCCTGCAACATTTCTATC 57.192 36.000 0.00 0.00 0.00 2.08
3942 10581 8.593945 TTTTCCTATTCCTGCAACATTTCTAT 57.406 30.769 0.00 0.00 0.00 1.98
3943 10582 8.593945 ATTTTCCTATTCCTGCAACATTTCTA 57.406 30.769 0.00 0.00 0.00 2.10
3944 10583 6.916360 TTTTCCTATTCCTGCAACATTTCT 57.084 33.333 0.00 0.00 0.00 2.52
3945 10584 7.322664 TGATTTTCCTATTCCTGCAACATTTC 58.677 34.615 0.00 0.00 0.00 2.17
3946 10585 7.243604 TGATTTTCCTATTCCTGCAACATTT 57.756 32.000 0.00 0.00 0.00 2.32
3947 10586 6.855763 TGATTTTCCTATTCCTGCAACATT 57.144 33.333 0.00 0.00 0.00 2.71
3948 10587 7.232127 CCTATGATTTTCCTATTCCTGCAACAT 59.768 37.037 0.00 0.00 0.00 2.71
3949 10588 6.547141 CCTATGATTTTCCTATTCCTGCAACA 59.453 38.462 0.00 0.00 0.00 3.33
3950 10589 6.772716 TCCTATGATTTTCCTATTCCTGCAAC 59.227 38.462 0.00 0.00 0.00 4.17
3951 10590 6.910191 TCCTATGATTTTCCTATTCCTGCAA 58.090 36.000 0.00 0.00 0.00 4.08
3952 10591 6.514012 TCCTATGATTTTCCTATTCCTGCA 57.486 37.500 0.00 0.00 0.00 4.41
3953 10592 7.001073 ACTTCCTATGATTTTCCTATTCCTGC 58.999 38.462 0.00 0.00 0.00 4.85
3954 10593 8.213679 TCACTTCCTATGATTTTCCTATTCCTG 58.786 37.037 0.00 0.00 0.00 3.86
3955 10594 8.337118 TCACTTCCTATGATTTTCCTATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
3956 10595 8.432805 TCTCACTTCCTATGATTTTCCTATTCC 58.567 37.037 0.00 0.00 0.00 3.01
3958 10597 9.790344 CATCTCACTTCCTATGATTTTCCTATT 57.210 33.333 0.00 0.00 0.00 1.73
3959 10598 9.163894 TCATCTCACTTCCTATGATTTTCCTAT 57.836 33.333 0.00 0.00 0.00 2.57
3960 10599 8.424918 GTCATCTCACTTCCTATGATTTTCCTA 58.575 37.037 0.00 0.00 31.49 2.94
3961 10600 7.092712 TGTCATCTCACTTCCTATGATTTTCCT 60.093 37.037 0.00 0.00 31.49 3.36
3962 10601 7.050377 TGTCATCTCACTTCCTATGATTTTCC 58.950 38.462 0.00 0.00 31.49 3.13
3963 10602 8.557864 CATGTCATCTCACTTCCTATGATTTTC 58.442 37.037 0.00 0.00 31.49 2.29
3964 10603 7.013083 GCATGTCATCTCACTTCCTATGATTTT 59.987 37.037 0.00 0.00 31.49 1.82
3965 10604 6.485984 GCATGTCATCTCACTTCCTATGATTT 59.514 38.462 0.00 0.00 31.49 2.17
3966 10605 5.996513 GCATGTCATCTCACTTCCTATGATT 59.003 40.000 0.00 0.00 31.49 2.57
3967 10606 5.071384 TGCATGTCATCTCACTTCCTATGAT 59.929 40.000 0.00 0.00 31.49 2.45
3968 10607 4.406649 TGCATGTCATCTCACTTCCTATGA 59.593 41.667 0.00 0.00 0.00 2.15
3969 10608 4.700700 TGCATGTCATCTCACTTCCTATG 58.299 43.478 0.00 0.00 0.00 2.23
3970 10609 5.549347 GATGCATGTCATCTCACTTCCTAT 58.451 41.667 2.46 0.00 46.29 2.57
3971 10610 4.953667 GATGCATGTCATCTCACTTCCTA 58.046 43.478 2.46 0.00 46.29 2.94
3972 10611 3.806380 GATGCATGTCATCTCACTTCCT 58.194 45.455 2.46 0.00 46.29 3.36
3982 10621 7.914859 TCTATAGGAATTGAGATGCATGTCAT 58.085 34.615 25.41 13.07 38.32 3.06
3983 10622 7.234166 TCTCTATAGGAATTGAGATGCATGTCA 59.766 37.037 21.70 21.70 38.53 3.58
3984 10623 7.609960 TCTCTATAGGAATTGAGATGCATGTC 58.390 38.462 16.63 16.63 38.53 3.06
3985 10624 7.550597 TCTCTATAGGAATTGAGATGCATGT 57.449 36.000 2.46 0.00 38.53 3.21
3986 10625 8.843885 TTTCTCTATAGGAATTGAGATGCATG 57.156 34.615 2.46 0.00 41.55 4.06
3987 10626 8.878211 TCTTTCTCTATAGGAATTGAGATGCAT 58.122 33.333 0.00 0.00 41.55 3.96
3988 10627 8.255111 TCTTTCTCTATAGGAATTGAGATGCA 57.745 34.615 0.00 0.00 41.55 3.96
3989 10628 8.584157 TCTCTTTCTCTATAGGAATTGAGATGC 58.416 37.037 19.11 0.00 41.55 3.91
3992 10631 9.653516 ACATCTCTTTCTCTATAGGAATTGAGA 57.346 33.333 21.74 21.74 40.68 3.27
3993 10632 9.912634 GACATCTCTTTCTCTATAGGAATTGAG 57.087 37.037 16.99 16.99 36.61 3.02
3994 10633 9.426534 TGACATCTCTTTCTCTATAGGAATTGA 57.573 33.333 0.00 4.25 0.00 2.57
3999 10638 9.426534 TCAAATGACATCTCTTTCTCTATAGGA 57.573 33.333 0.00 0.00 0.00 2.94
4002 10641 9.486497 GCATCAAATGACATCTCTTTCTCTATA 57.514 33.333 0.00 0.00 0.00 1.31
4003 10642 7.991460 TGCATCAAATGACATCTCTTTCTCTAT 59.009 33.333 0.00 0.00 0.00 1.98
4004 10643 7.333323 TGCATCAAATGACATCTCTTTCTCTA 58.667 34.615 0.00 0.00 0.00 2.43
4005 10644 6.178324 TGCATCAAATGACATCTCTTTCTCT 58.822 36.000 0.00 0.00 0.00 3.10
4006 10645 6.432607 TGCATCAAATGACATCTCTTTCTC 57.567 37.500 0.00 0.00 0.00 2.87
4007 10646 7.228906 CCTATGCATCAAATGACATCTCTTTCT 59.771 37.037 0.19 0.00 32.25 2.52
4008 10647 7.228108 TCCTATGCATCAAATGACATCTCTTTC 59.772 37.037 0.19 0.00 32.25 2.62
4009 10648 7.058525 TCCTATGCATCAAATGACATCTCTTT 58.941 34.615 0.19 0.00 32.25 2.52
4010 10649 6.598503 TCCTATGCATCAAATGACATCTCTT 58.401 36.000 0.19 0.00 32.25 2.85
4011 10650 6.183810 TCCTATGCATCAAATGACATCTCT 57.816 37.500 0.19 0.00 32.25 3.10
4012 10651 7.280428 CCTATCCTATGCATCAAATGACATCTC 59.720 40.741 0.19 0.00 32.25 2.75
4013 10652 7.037802 TCCTATCCTATGCATCAAATGACATCT 60.038 37.037 0.19 0.00 32.25 2.90
4014 10653 7.108194 TCCTATCCTATGCATCAAATGACATC 58.892 38.462 0.19 0.00 32.25 3.06
4015 10654 7.024345 TCCTATCCTATGCATCAAATGACAT 57.976 36.000 0.19 0.00 33.67 3.06
4016 10655 6.438186 TCCTATCCTATGCATCAAATGACA 57.562 37.500 0.19 0.00 0.00 3.58
4017 10656 7.934855 ATTCCTATCCTATGCATCAAATGAC 57.065 36.000 0.19 0.00 0.00 3.06
4018 10657 8.945195 AAATTCCTATCCTATGCATCAAATGA 57.055 30.769 0.19 0.00 0.00 2.57
4019 10658 9.991906 AAAAATTCCTATCCTATGCATCAAATG 57.008 29.630 0.19 0.00 0.00 2.32
4021 10660 8.641541 GGAAAAATTCCTATCCTATGCATCAAA 58.358 33.333 0.19 0.00 46.57 2.69
4022 10661 8.181904 GGAAAAATTCCTATCCTATGCATCAA 57.818 34.615 0.19 0.00 46.57 2.57
4023 10662 7.765695 GGAAAAATTCCTATCCTATGCATCA 57.234 36.000 0.19 0.00 46.57 3.07
4038 10677 5.220873 GGCCTAAGACTCGATGGAAAAATTC 60.221 44.000 0.00 0.00 0.00 2.17
4039 10678 4.640647 GGCCTAAGACTCGATGGAAAAATT 59.359 41.667 0.00 0.00 0.00 1.82
4040 10679 4.080299 AGGCCTAAGACTCGATGGAAAAAT 60.080 41.667 1.29 0.00 0.00 1.82
4041 10680 3.263425 AGGCCTAAGACTCGATGGAAAAA 59.737 43.478 1.29 0.00 0.00 1.94
4042 10681 2.838202 AGGCCTAAGACTCGATGGAAAA 59.162 45.455 1.29 0.00 0.00 2.29
4043 10682 2.467880 AGGCCTAAGACTCGATGGAAA 58.532 47.619 1.29 0.00 0.00 3.13
4044 10683 2.160721 AGGCCTAAGACTCGATGGAA 57.839 50.000 1.29 0.00 0.00 3.53
4045 10684 2.032620 GAAGGCCTAAGACTCGATGGA 58.967 52.381 5.16 0.00 0.00 3.41
4046 10685 2.035632 AGAAGGCCTAAGACTCGATGG 58.964 52.381 5.16 0.00 0.00 3.51
4047 10686 3.810310 AAGAAGGCCTAAGACTCGATG 57.190 47.619 5.16 0.00 0.00 3.84
4048 10687 3.118592 CCAAAGAAGGCCTAAGACTCGAT 60.119 47.826 5.16 0.00 0.00 3.59
4049 10688 2.233922 CCAAAGAAGGCCTAAGACTCGA 59.766 50.000 5.16 0.00 0.00 4.04
4050 10689 2.028020 ACCAAAGAAGGCCTAAGACTCG 60.028 50.000 5.16 0.00 0.00 4.18
4051 10690 3.704800 ACCAAAGAAGGCCTAAGACTC 57.295 47.619 5.16 0.00 0.00 3.36
4052 10691 3.244946 GGAACCAAAGAAGGCCTAAGACT 60.245 47.826 5.16 0.08 0.00 3.24
4053 10692 3.082548 GGAACCAAAGAAGGCCTAAGAC 58.917 50.000 5.16 0.00 0.00 3.01
4054 10693 2.986728 AGGAACCAAAGAAGGCCTAAGA 59.013 45.455 5.16 0.00 0.00 2.10
4055 10694 3.441500 AGGAACCAAAGAAGGCCTAAG 57.558 47.619 5.16 0.00 0.00 2.18
4056 10695 3.895041 CAAAGGAACCAAAGAAGGCCTAA 59.105 43.478 5.16 0.00 0.00 2.69
4057 10696 3.139397 TCAAAGGAACCAAAGAAGGCCTA 59.861 43.478 5.16 0.00 0.00 3.93
4058 10697 2.091333 TCAAAGGAACCAAAGAAGGCCT 60.091 45.455 0.00 0.00 0.00 5.19
4059 10698 2.316108 TCAAAGGAACCAAAGAAGGCC 58.684 47.619 0.00 0.00 0.00 5.19
4060 10699 3.800261 GCTTCAAAGGAACCAAAGAAGGC 60.800 47.826 15.33 8.32 34.57 4.35
4061 10700 3.243873 GGCTTCAAAGGAACCAAAGAAGG 60.244 47.826 15.33 0.00 34.57 3.46
4062 10701 3.243873 GGGCTTCAAAGGAACCAAAGAAG 60.244 47.826 11.77 11.77 36.47 2.85
4063 10702 2.698274 GGGCTTCAAAGGAACCAAAGAA 59.302 45.455 0.00 0.00 0.00 2.52
4064 10703 2.091333 AGGGCTTCAAAGGAACCAAAGA 60.091 45.455 0.00 0.00 0.00 2.52
4065 10704 2.319844 AGGGCTTCAAAGGAACCAAAG 58.680 47.619 0.00 0.00 0.00 2.77
4066 10705 2.470057 AGGGCTTCAAAGGAACCAAA 57.530 45.000 0.00 0.00 0.00 3.28
4067 10706 2.433970 CAAAGGGCTTCAAAGGAACCAA 59.566 45.455 0.00 0.00 0.00 3.67
4068 10707 2.038659 CAAAGGGCTTCAAAGGAACCA 58.961 47.619 0.00 0.00 0.00 3.67
4069 10708 2.316108 TCAAAGGGCTTCAAAGGAACC 58.684 47.619 0.00 0.00 0.00 3.62
4070 10709 4.607293 AATCAAAGGGCTTCAAAGGAAC 57.393 40.909 0.00 0.00 0.00 3.62
4071 10710 4.408596 ACAAATCAAAGGGCTTCAAAGGAA 59.591 37.500 0.00 0.00 0.00 3.36
4072 10711 3.966665 ACAAATCAAAGGGCTTCAAAGGA 59.033 39.130 0.00 0.00 0.00 3.36
4073 10712 4.341366 ACAAATCAAAGGGCTTCAAAGG 57.659 40.909 0.00 0.00 0.00 3.11
4074 10713 5.243730 TCCTACAAATCAAAGGGCTTCAAAG 59.756 40.000 0.00 0.00 0.00 2.77
4075 10714 5.144100 TCCTACAAATCAAAGGGCTTCAAA 58.856 37.500 0.00 0.00 0.00 2.69
4076 10715 4.735369 TCCTACAAATCAAAGGGCTTCAA 58.265 39.130 0.00 0.00 0.00 2.69
4077 10716 4.380843 TCCTACAAATCAAAGGGCTTCA 57.619 40.909 0.00 0.00 0.00 3.02
4078 10717 5.394553 CCATTCCTACAAATCAAAGGGCTTC 60.395 44.000 0.00 0.00 0.00 3.86
4079 10718 4.467438 CCATTCCTACAAATCAAAGGGCTT 59.533 41.667 0.00 0.00 0.00 4.35
4080 10719 4.026052 CCATTCCTACAAATCAAAGGGCT 58.974 43.478 0.00 0.00 0.00 5.19
4081 10720 4.023291 TCCATTCCTACAAATCAAAGGGC 58.977 43.478 0.00 0.00 0.00 5.19
4082 10721 6.796785 AATCCATTCCTACAAATCAAAGGG 57.203 37.500 0.00 0.00 0.00 3.95
4125 10764 3.920412 GCAAAACGTGAAGGATTGATTCC 59.080 43.478 0.00 0.00 45.85 3.01
4126 10765 4.545610 TGCAAAACGTGAAGGATTGATTC 58.454 39.130 0.00 0.00 0.00 2.52
4127 10766 4.549458 CTGCAAAACGTGAAGGATTGATT 58.451 39.130 0.00 0.00 0.00 2.57
4128 10767 4.164822 CTGCAAAACGTGAAGGATTGAT 57.835 40.909 0.00 0.00 0.00 2.57
4129 10768 3.624326 CTGCAAAACGTGAAGGATTGA 57.376 42.857 0.00 0.00 0.00 2.57
4154 10793 5.774690 TCATTGAGTCCAGGCTAATGTTTTT 59.225 36.000 5.58 0.00 32.22 1.94
4155 10794 5.324409 TCATTGAGTCCAGGCTAATGTTTT 58.676 37.500 5.58 0.00 32.22 2.43
4156 10795 4.922206 TCATTGAGTCCAGGCTAATGTTT 58.078 39.130 5.58 0.00 32.22 2.83
4157 10796 4.574674 TCATTGAGTCCAGGCTAATGTT 57.425 40.909 5.58 0.00 32.22 2.71
4158 10797 4.574674 TTCATTGAGTCCAGGCTAATGT 57.425 40.909 5.58 0.00 32.22 2.71
4159 10798 5.902613 TTTTCATTGAGTCCAGGCTAATG 57.097 39.130 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.