Multiple sequence alignment - TraesCS3A01G377500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G377500 chr3A 100.000 5468 0 0 1 5468 627269673 627275140 0.000000e+00 10098.0
1 TraesCS3A01G377500 chr3D 89.824 2329 153 44 1 2306 484339981 484342248 0.000000e+00 2911.0
2 TraesCS3A01G377500 chr3D 89.504 1210 61 32 3550 4727 484343205 484344380 0.000000e+00 1471.0
3 TraesCS3A01G377500 chr3D 94.008 968 15 7 2562 3493 484342245 484343205 0.000000e+00 1426.0
4 TraesCS3A01G377500 chr3D 83.893 745 47 24 4762 5468 484344378 484345087 1.280000e-180 643.0
5 TraesCS3A01G377500 chr3B 86.340 1962 155 53 1 1940 647169931 647171801 0.000000e+00 2034.0
6 TraesCS3A01G377500 chr3B 82.749 1368 125 46 2562 3876 647171996 647173305 0.000000e+00 1116.0
7 TraesCS3A01G377500 chr3B 88.146 329 30 7 958 1286 290615134 290615453 3.090000e-102 383.0
8 TraesCS3A01G377500 chr3B 81.514 449 41 20 4290 4727 647176362 647176779 1.140000e-86 331.0
9 TraesCS3A01G377500 chr3B 81.498 454 37 23 4762 5197 647176777 647177201 4.080000e-86 329.0
10 TraesCS3A01G377500 chr3B 78.151 238 38 9 4187 4418 456403503 456403732 7.390000e-29 139.0
11 TraesCS3A01G377500 chr5D 90.274 329 23 6 958 1286 79988055 79988374 6.550000e-114 422.0
12 TraesCS3A01G377500 chr6D 94.595 259 14 0 2303 2561 71936308 71936566 8.530000e-108 401.0
13 TraesCS3A01G377500 chr6D 90.370 270 24 1 2302 2571 402325321 402325054 2.420000e-93 353.0
14 TraesCS3A01G377500 chr6D 88.971 272 25 3 1015 1286 294698274 294698008 1.140000e-86 331.0
15 TraesCS3A01G377500 chr6A 88.822 331 28 6 957 1286 251475484 251475162 1.100000e-106 398.0
16 TraesCS3A01G377500 chr6A 87.842 329 31 7 958 1286 252021073 252021392 1.440000e-100 377.0
17 TraesCS3A01G377500 chr5A 93.130 262 18 0 2303 2564 703663792 703664053 8.590000e-103 385.0
18 TraesCS3A01G377500 chr5A 92.520 254 17 1 2304 2555 388577929 388578182 4.030000e-96 363.0
19 TraesCS3A01G377500 chr5A 90.000 270 27 0 2299 2568 52281421 52281152 3.130000e-92 350.0
20 TraesCS3A01G377500 chr7A 92.193 269 15 1 2304 2566 119605109 119604841 5.170000e-100 375.0
21 TraesCS3A01G377500 chr7A 87.037 162 20 1 1097 1258 397428945 397428785 1.210000e-41 182.0
22 TraesCS3A01G377500 chrUn 92.366 262 20 0 2303 2564 218391834 218391573 1.860000e-99 374.0
23 TraesCS3A01G377500 chr4A 91.852 270 19 2 2304 2570 31397198 31396929 1.860000e-99 374.0
24 TraesCS3A01G377500 chr7B 91.221 262 23 0 2303 2564 173229782 173229521 1.870000e-94 357.0
25 TraesCS3A01G377500 chr7B 97.101 207 6 0 1 207 63935182 63935388 3.130000e-92 350.0
26 TraesCS3A01G377500 chr7B 88.364 275 27 3 1012 1286 601441486 601441755 5.280000e-85 326.0
27 TraesCS3A01G377500 chr7B 75.207 121 24 3 4298 4418 52564860 52564974 1.000000e-02 52.8
28 TraesCS3A01G377500 chr1A 96.698 212 6 1 1 211 468598993 468598782 8.710000e-93 351.0
29 TraesCS3A01G377500 chr1A 97.101 207 6 0 1 207 400975143 400974937 3.130000e-92 350.0
30 TraesCS3A01G377500 chr1A 78.414 227 36 10 4197 4418 384314320 384314102 9.550000e-28 135.0
31 TraesCS3A01G377500 chr1B 97.101 207 6 0 1 207 434409288 434409494 3.130000e-92 350.0
32 TraesCS3A01G377500 chr1B 97.101 207 6 0 1 207 434422991 434422785 3.130000e-92 350.0
33 TraesCS3A01G377500 chr2A 96.209 211 7 1 1 211 619760725 619760934 1.460000e-90 344.0
34 TraesCS3A01G377500 chr1D 96.618 207 7 0 1 207 321640874 321641080 1.460000e-90 344.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G377500 chr3A 627269673 627275140 5467 False 10098.00 10098 100.00000 1 5468 1 chr3A.!!$F1 5467
1 TraesCS3A01G377500 chr3D 484339981 484345087 5106 False 1612.75 2911 89.30725 1 5468 4 chr3D.!!$F1 5467
2 TraesCS3A01G377500 chr3B 647169931 647177201 7270 False 952.50 2034 83.02525 1 5197 4 chr3B.!!$F3 5196


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
500 502 0.036022 AAGCAGAGGAAGAGCACCAC 59.964 55.000 0.00 0.0 0.00 4.16 F
1428 1445 0.266152 AGCCTGTAGCCCTATCTGGT 59.734 55.000 0.00 0.0 45.47 4.00 F
2320 2366 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.000 0.00 0.0 0.00 3.11 F
2330 2376 1.070445 TCCGGTCCTTTTTAGTTCGCA 59.930 47.619 0.00 0.0 0.00 5.10 F
2556 2602 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.0 0.00 5.14 F
3348 3437 2.136298 TTTCACTGTGGAACTTGCCA 57.864 45.000 8.11 0.0 38.04 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2259 2305 0.029300 ACTGCATGACAACAACGTGC 59.971 50.0 0.00 0.0 46.45 5.34 R
2550 2596 0.034283 AGACTGTACTCCCTCCGGTC 60.034 60.0 0.00 0.0 35.23 4.79 R
4193 7012 0.112218 TGCCTTAAGAGCCCTTTGCA 59.888 50.0 3.36 0.0 44.83 4.08 R
4282 7105 0.238289 CAGCAAGTTACAAGGGCACG 59.762 55.0 0.00 0.0 0.00 5.34 R
4283 7106 1.604604 TCAGCAAGTTACAAGGGCAC 58.395 50.0 0.00 0.0 0.00 5.01 R
4734 7567 0.178068 GCGCAGGGAGAAACCATCTA 59.822 55.0 0.30 0.0 38.96 1.98 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 134 2.031163 GACACCAACCTCTGCGCT 59.969 61.111 9.73 0.00 0.00 5.92
245 246 1.330779 CGTGCGTTGTCAGAGAGTCG 61.331 60.000 0.00 0.00 0.00 4.18
247 248 0.317854 TGCGTTGTCAGAGAGTCGTG 60.318 55.000 0.00 0.00 0.00 4.35
263 264 1.626654 CGTGCTGTGATGTTCCGGTC 61.627 60.000 0.00 0.00 0.00 4.79
265 266 0.396435 TGCTGTGATGTTCCGGTCTT 59.604 50.000 0.00 0.00 0.00 3.01
283 285 2.233922 TCTTAGAGCTTGGTGGTGTAGC 59.766 50.000 0.00 0.00 35.16 3.58
313 315 3.173240 GTCCGCTCTCGTCGTTGC 61.173 66.667 0.00 0.00 0.00 4.17
329 331 1.338020 GTTGCCTTGCCATATGTAGCC 59.662 52.381 1.24 0.00 0.00 3.93
369 371 7.792374 TTATCAATGAAGAGTGCAGTTATCC 57.208 36.000 0.00 0.00 0.00 2.59
383 385 6.309980 GTGCAGTTATCCTCATATGAATCTCG 59.690 42.308 6.90 0.00 0.00 4.04
395 397 4.910746 ATGAATCTCGTTTCAGTGTTCG 57.089 40.909 0.00 0.00 38.90 3.95
401 403 4.889241 TCTCGTTTCAGTGTTCGTTTTTC 58.111 39.130 0.00 0.00 0.00 2.29
402 404 4.628333 TCTCGTTTCAGTGTTCGTTTTTCT 59.372 37.500 0.00 0.00 0.00 2.52
403 405 4.643953 TCGTTTCAGTGTTCGTTTTTCTG 58.356 39.130 0.00 0.00 0.00 3.02
404 406 4.389382 TCGTTTCAGTGTTCGTTTTTCTGA 59.611 37.500 0.00 0.00 34.08 3.27
405 407 5.083389 CGTTTCAGTGTTCGTTTTTCTGAA 58.917 37.500 0.00 0.00 41.36 3.02
406 408 5.737290 CGTTTCAGTGTTCGTTTTTCTGAAT 59.263 36.000 6.72 0.00 42.18 2.57
408 410 6.677781 TTCAGTGTTCGTTTTTCTGAATCT 57.322 33.333 0.00 0.00 39.27 2.40
409 411 6.287107 TCAGTGTTCGTTTTTCTGAATCTC 57.713 37.500 0.00 0.00 33.18 2.75
410 412 5.815222 TCAGTGTTCGTTTTTCTGAATCTCA 59.185 36.000 0.00 0.00 33.18 3.27
416 418 7.857389 TGTTCGTTTTTCTGAATCTCATTTCTG 59.143 33.333 0.00 0.00 0.00 3.02
418 420 7.930217 TCGTTTTTCTGAATCTCATTTCTGTT 58.070 30.769 0.00 0.00 0.00 3.16
419 421 7.857389 TCGTTTTTCTGAATCTCATTTCTGTTG 59.143 33.333 0.00 0.00 0.00 3.33
424 426 6.479006 TCTGAATCTCATTTCTGTTGGATGT 58.521 36.000 0.00 0.00 0.00 3.06
431 433 5.620206 TCATTTCTGTTGGATGTGTACTGT 58.380 37.500 0.00 0.00 0.00 3.55
432 434 5.700832 TCATTTCTGTTGGATGTGTACTGTC 59.299 40.000 0.00 0.00 0.00 3.51
435 437 5.290493 TCTGTTGGATGTGTACTGTCTTT 57.710 39.130 0.00 0.00 0.00 2.52
436 438 5.297547 TCTGTTGGATGTGTACTGTCTTTC 58.702 41.667 0.00 0.00 0.00 2.62
467 469 3.927142 AGTTTCGTTGTCTAGCTGTATGC 59.073 43.478 0.00 0.00 43.29 3.14
496 498 1.051008 TGTGAAGCAGAGGAAGAGCA 58.949 50.000 0.00 0.00 0.00 4.26
498 500 0.322975 TGAAGCAGAGGAAGAGCACC 59.677 55.000 0.00 0.00 0.00 5.01
499 501 0.322975 GAAGCAGAGGAAGAGCACCA 59.677 55.000 0.00 0.00 0.00 4.17
500 502 0.036022 AAGCAGAGGAAGAGCACCAC 59.964 55.000 0.00 0.00 0.00 4.16
515 517 2.350772 GCACCACTGCCGCATAATAATC 60.351 50.000 0.00 0.00 37.45 1.75
523 525 3.684305 TGCCGCATAATAATCTTCATCCG 59.316 43.478 0.00 0.00 0.00 4.18
532 534 9.979270 CATAATAATCTTCATCCGTTGATTAGC 57.021 33.333 0.00 0.00 35.66 3.09
534 536 3.194005 TCTTCATCCGTTGATTAGCCC 57.806 47.619 0.00 0.00 33.34 5.19
535 537 2.158813 TCTTCATCCGTTGATTAGCCCC 60.159 50.000 0.00 0.00 33.34 5.80
537 539 1.843851 TCATCCGTTGATTAGCCCCTT 59.156 47.619 0.00 0.00 0.00 3.95
552 554 0.740737 CCCTTCCGTCATTGGATTGC 59.259 55.000 0.00 0.00 38.00 3.56
553 555 0.378257 CCTTCCGTCATTGGATTGCG 59.622 55.000 0.00 0.00 38.00 4.85
554 556 1.086696 CTTCCGTCATTGGATTGCGT 58.913 50.000 0.00 0.00 38.00 5.24
565 567 1.000145 GGATTGCGTCCTTCGTCTTC 59.000 55.000 0.91 0.00 44.16 2.87
573 578 2.683867 CGTCCTTCGTCTTCCACTCTAT 59.316 50.000 0.00 0.00 34.52 1.98
578 583 7.095270 GTCCTTCGTCTTCCACTCTATTTTAA 58.905 38.462 0.00 0.00 0.00 1.52
581 586 8.604890 CCTTCGTCTTCCACTCTATTTTAATTC 58.395 37.037 0.00 0.00 0.00 2.17
614 619 9.465985 TTTTTCTTAATTTTCGGATGGTGTTAC 57.534 29.630 0.00 0.00 0.00 2.50
615 620 6.411630 TCTTAATTTTCGGATGGTGTTACG 57.588 37.500 0.00 0.00 0.00 3.18
616 621 3.481112 AATTTTCGGATGGTGTTACGC 57.519 42.857 0.00 0.00 0.00 4.42
636 642 3.204526 GCTGATGGAGATGAAGAACAGG 58.795 50.000 0.00 0.00 0.00 4.00
645 651 2.509336 AAGAACAGGATCGCCGCG 60.509 61.111 6.39 6.39 39.96 6.46
655 661 0.304705 GATCGCCGCGTCATGATTTT 59.695 50.000 13.39 0.00 0.00 1.82
660 666 0.999406 CCGCGTCATGATTTTCGTCT 59.001 50.000 4.92 0.00 0.00 4.18
661 667 1.005975 CCGCGTCATGATTTTCGTCTC 60.006 52.381 4.92 0.00 0.00 3.36
662 668 1.653609 CGCGTCATGATTTTCGTCTCA 59.346 47.619 0.00 0.00 0.00 3.27
663 669 2.532973 CGCGTCATGATTTTCGTCTCAC 60.533 50.000 0.00 0.00 0.00 3.51
664 670 2.222819 GCGTCATGATTTTCGTCTCACC 60.223 50.000 0.00 0.00 0.00 4.02
665 671 2.028045 CGTCATGATTTTCGTCTCACCG 59.972 50.000 0.00 0.00 0.00 4.94
667 673 2.993220 TCATGATTTTCGTCTCACCGTG 59.007 45.455 0.00 0.00 0.00 4.94
668 674 1.790755 TGATTTTCGTCTCACCGTGG 58.209 50.000 0.00 0.00 0.00 4.94
669 675 1.069513 TGATTTTCGTCTCACCGTGGT 59.930 47.619 0.00 0.00 0.00 4.16
670 676 2.140717 GATTTTCGTCTCACCGTGGTT 58.859 47.619 0.00 0.00 0.00 3.67
671 677 2.886862 TTTTCGTCTCACCGTGGTTA 57.113 45.000 0.00 0.00 0.00 2.85
672 678 3.389925 TTTTCGTCTCACCGTGGTTAT 57.610 42.857 0.00 0.00 0.00 1.89
673 679 2.357327 TTCGTCTCACCGTGGTTATG 57.643 50.000 0.00 0.00 0.00 1.90
674 680 1.250328 TCGTCTCACCGTGGTTATGT 58.750 50.000 0.00 0.00 0.00 2.29
675 681 1.614903 TCGTCTCACCGTGGTTATGTT 59.385 47.619 0.00 0.00 0.00 2.71
678 684 3.135994 GTCTCACCGTGGTTATGTTGTT 58.864 45.455 0.00 0.00 0.00 2.83
679 685 3.185797 GTCTCACCGTGGTTATGTTGTTC 59.814 47.826 0.00 0.00 0.00 3.18
680 686 2.482721 CTCACCGTGGTTATGTTGTTCC 59.517 50.000 0.00 0.00 0.00 3.62
681 687 2.158798 TCACCGTGGTTATGTTGTTCCA 60.159 45.455 0.00 0.00 0.00 3.53
683 689 4.004314 CACCGTGGTTATGTTGTTCCATA 58.996 43.478 0.00 0.00 32.45 2.74
684 690 4.638421 CACCGTGGTTATGTTGTTCCATAT 59.362 41.667 0.00 0.00 32.45 1.78
686 692 5.124776 ACCGTGGTTATGTTGTTCCATATTG 59.875 40.000 0.00 0.00 32.45 1.90
687 693 5.355630 CCGTGGTTATGTTGTTCCATATTGA 59.644 40.000 0.00 0.00 32.45 2.57
688 694 6.458206 CCGTGGTTATGTTGTTCCATATTGAG 60.458 42.308 0.00 0.00 32.45 3.02
689 695 6.315144 CGTGGTTATGTTGTTCCATATTGAGA 59.685 38.462 0.00 0.00 32.45 3.27
691 697 9.337396 GTGGTTATGTTGTTCCATATTGAGATA 57.663 33.333 0.00 0.00 32.45 1.98
746 753 1.005394 TTTCCAGGTTCTCCGCGTC 60.005 57.895 4.92 0.00 39.05 5.19
761 768 3.435186 GTCTGCCTCTTTGCCGCC 61.435 66.667 0.00 0.00 0.00 6.13
765 772 4.416738 GCCTCTTTGCCGCCTCCT 62.417 66.667 0.00 0.00 0.00 3.69
1260 1271 2.823147 GATCTGCTTGCCGCTGCT 60.823 61.111 0.70 0.00 40.11 4.24
1330 1341 2.609491 GGTTTGGACTGATTTTTCCGGC 60.609 50.000 0.00 0.00 34.24 6.13
1345 1356 2.435059 GGCGGTCAGTCTTCTGCC 60.435 66.667 8.38 8.38 46.60 4.85
1351 1362 1.837051 TCAGTCTTCTGCCACGGGT 60.837 57.895 0.00 0.00 41.10 5.28
1354 1365 1.122019 AGTCTTCTGCCACGGGTCTT 61.122 55.000 0.00 0.00 0.00 3.01
1355 1366 0.606604 GTCTTCTGCCACGGGTCTTA 59.393 55.000 0.00 0.00 0.00 2.10
1357 1368 0.736325 CTTCTGCCACGGGTCTTACG 60.736 60.000 0.00 0.00 37.36 3.18
1388 1399 2.477245 TCCTAGAGCAAGGCCAACATA 58.523 47.619 5.01 0.00 36.51 2.29
1389 1400 2.843730 TCCTAGAGCAAGGCCAACATAA 59.156 45.455 5.01 0.00 36.51 1.90
1392 1403 3.160679 AGAGCAAGGCCAACATAAGTT 57.839 42.857 5.01 0.00 38.88 2.66
1428 1445 0.266152 AGCCTGTAGCCCTATCTGGT 59.734 55.000 0.00 0.00 45.47 4.00
1455 1472 1.067060 TCCGATGTGCTGTAGGATTCG 59.933 52.381 0.00 0.00 0.00 3.34
1461 1478 1.394917 GTGCTGTAGGATTCGCACTTG 59.605 52.381 6.04 0.00 46.70 3.16
1516 1534 3.873952 GGCTTGTGATTCTCTGTCCATAC 59.126 47.826 0.00 0.00 0.00 2.39
1550 1568 9.934190 TGATTATGTGACAATATCGACAATTTG 57.066 29.630 0.00 0.00 0.00 2.32
1571 1589 3.763360 TGCATTTGGTGGATTTGACCTAG 59.237 43.478 0.00 0.00 34.26 3.02
1573 1591 4.947388 GCATTTGGTGGATTTGACCTAGTA 59.053 41.667 0.00 0.00 34.26 1.82
1577 1595 7.696992 TTTGGTGGATTTGACCTAGTATTTC 57.303 36.000 0.00 0.00 34.26 2.17
1578 1596 5.424757 TGGTGGATTTGACCTAGTATTTCG 58.575 41.667 0.00 0.00 34.26 3.46
1579 1597 4.814771 GGTGGATTTGACCTAGTATTTCGG 59.185 45.833 0.00 0.00 0.00 4.30
1599 1617 3.542680 CGGTGCTTACGGCGTAATTTAAG 60.543 47.826 30.12 21.50 45.43 1.85
1606 1624 0.742505 GGCGTAATTTAAGCCCCACC 59.257 55.000 19.13 0.00 45.87 4.61
1625 1643 4.503991 CCACCTGCTCCTATTCCTTGTATC 60.504 50.000 0.00 0.00 0.00 2.24
1630 1648 4.968719 TGCTCCTATTCCTTGTATCTCCAA 59.031 41.667 0.00 0.00 0.00 3.53
1650 1668 4.159135 CCAATTGATTGCTAGTGCTCCTTT 59.841 41.667 7.12 0.00 40.48 3.11
1685 1703 4.148696 ACTTTGAGCAAATTCATTTTCGCG 59.851 37.500 0.00 0.00 31.09 5.87
1699 1717 6.474364 TCATTTTCGCGTATGTAATTGTGAG 58.526 36.000 5.77 0.00 0.00 3.51
1700 1718 6.311690 TCATTTTCGCGTATGTAATTGTGAGA 59.688 34.615 5.77 0.00 0.00 3.27
1701 1719 6.656314 TTTTCGCGTATGTAATTGTGAGAT 57.344 33.333 5.77 0.00 0.00 2.75
1703 1721 3.972502 TCGCGTATGTAATTGTGAGATCG 59.027 43.478 5.77 0.00 0.00 3.69
1704 1722 3.972502 CGCGTATGTAATTGTGAGATCGA 59.027 43.478 0.00 0.00 0.00 3.59
1710 1729 8.158445 CGTATGTAATTGTGAGATCGAATCATG 58.842 37.037 6.93 0.00 0.00 3.07
1737 1756 2.223572 ACTTTGCCGTTTCTTTGCAGAG 60.224 45.455 0.00 0.00 41.49 3.35
1746 1765 4.318831 CGTTTCTTTGCAGAGTACAAGGTC 60.319 45.833 3.90 0.00 0.00 3.85
1794 1813 2.033299 CGTGGTGGCATTTATGGATGAC 59.967 50.000 0.00 0.00 35.53 3.06
1913 1936 9.382275 GTATCAATTTTTACCAATGCAGGATTT 57.618 29.630 0.00 0.00 0.00 2.17
1967 2013 6.240894 TGAATGCTTCCAGATACAGACTTTT 58.759 36.000 0.00 0.00 0.00 2.27
1994 2040 9.486497 TGAAAATTATTAACAGAAAGCATGCAA 57.514 25.926 21.98 2.53 0.00 4.08
1995 2041 9.962759 GAAAATTATTAACAGAAAGCATGCAAG 57.037 29.630 21.98 6.88 0.00 4.01
1998 2044 4.916983 TTAACAGAAAGCATGCAAGTGT 57.083 36.364 21.98 14.21 0.00 3.55
2000 2046 3.088194 ACAGAAAGCATGCAAGTGTTG 57.912 42.857 21.98 12.24 0.00 3.33
2001 2047 2.689471 ACAGAAAGCATGCAAGTGTTGA 59.311 40.909 21.98 0.00 0.00 3.18
2002 2048 3.047796 CAGAAAGCATGCAAGTGTTGAC 58.952 45.455 21.98 3.57 0.00 3.18
2005 2051 1.024271 AGCATGCAAGTGTTGACGTT 58.976 45.000 21.98 0.00 0.00 3.99
2006 2052 2.217750 AGCATGCAAGTGTTGACGTTA 58.782 42.857 21.98 0.00 0.00 3.18
2007 2053 2.032030 AGCATGCAAGTGTTGACGTTAC 60.032 45.455 21.98 0.00 0.00 2.50
2008 2054 2.559872 CATGCAAGTGTTGACGTTACG 58.440 47.619 2.19 2.19 0.00 3.18
2009 2055 0.302288 TGCAAGTGTTGACGTTACGC 59.698 50.000 4.09 7.09 0.00 4.42
2077 2123 3.567397 CTCCCGCTAGGCTGGTATATAT 58.433 50.000 0.00 0.00 34.54 0.86
2124 2170 5.862845 TGCTTTGGCATTATTGAAAAGGAA 58.137 33.333 11.80 0.00 44.28 3.36
2162 2208 4.579869 GGAGCTACAAAGAAACATCTGGA 58.420 43.478 0.00 0.00 0.00 3.86
2259 2305 7.330454 GTGTAAGTCAGGAGATGCATACATATG 59.670 40.741 0.00 0.00 36.35 1.78
2288 2334 1.881973 TGTCATGCAGTTTGCTTCCTC 59.118 47.619 2.48 0.00 45.31 3.71
2302 2348 2.289002 GCTTCCTCGCTGATAAACCATG 59.711 50.000 0.00 0.00 0.00 3.66
2303 2349 3.535561 CTTCCTCGCTGATAAACCATGT 58.464 45.455 0.00 0.00 0.00 3.21
2304 2350 4.693283 CTTCCTCGCTGATAAACCATGTA 58.307 43.478 0.00 0.00 0.00 2.29
2305 2351 4.054780 TCCTCGCTGATAAACCATGTAC 57.945 45.455 0.00 0.00 0.00 2.90
2306 2352 3.704566 TCCTCGCTGATAAACCATGTACT 59.295 43.478 0.00 0.00 0.00 2.73
2307 2353 4.051922 CCTCGCTGATAAACCATGTACTC 58.948 47.826 0.00 0.00 0.00 2.59
2308 2354 4.051922 CTCGCTGATAAACCATGTACTCC 58.948 47.826 0.00 0.00 0.00 3.85
2309 2355 3.131396 CGCTGATAAACCATGTACTCCC 58.869 50.000 0.00 0.00 0.00 4.30
2310 2356 3.181465 CGCTGATAAACCATGTACTCCCT 60.181 47.826 0.00 0.00 0.00 4.20
2311 2357 4.381411 GCTGATAAACCATGTACTCCCTC 58.619 47.826 0.00 0.00 0.00 4.30
2312 2358 4.743955 GCTGATAAACCATGTACTCCCTCC 60.744 50.000 0.00 0.00 0.00 4.30
2313 2359 3.386726 TGATAAACCATGTACTCCCTCCG 59.613 47.826 0.00 0.00 0.00 4.63
2314 2360 0.909623 AAACCATGTACTCCCTCCGG 59.090 55.000 0.00 0.00 0.00 5.14
2315 2361 0.252558 AACCATGTACTCCCTCCGGT 60.253 55.000 0.00 0.00 0.00 5.28
2316 2362 0.686769 ACCATGTACTCCCTCCGGTC 60.687 60.000 0.00 0.00 0.00 4.79
2317 2363 1.400530 CCATGTACTCCCTCCGGTCC 61.401 65.000 0.00 0.00 0.00 4.46
2318 2364 0.397254 CATGTACTCCCTCCGGTCCT 60.397 60.000 0.00 0.00 0.00 3.85
2319 2365 0.338814 ATGTACTCCCTCCGGTCCTT 59.661 55.000 0.00 0.00 0.00 3.36
2320 2366 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.000 0.00 0.00 0.00 3.11
2321 2367 1.273759 GTACTCCCTCCGGTCCTTTT 58.726 55.000 0.00 0.00 0.00 2.27
2322 2368 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
2323 2369 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
2324 2370 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
2325 2371 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
2326 2372 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
2327 2373 2.303890 TCCCTCCGGTCCTTTTTAGTTC 59.696 50.000 0.00 0.00 0.00 3.01
2328 2374 2.344025 CCTCCGGTCCTTTTTAGTTCG 58.656 52.381 0.00 0.00 0.00 3.95
2329 2375 1.730612 CTCCGGTCCTTTTTAGTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
2330 2376 1.070445 TCCGGTCCTTTTTAGTTCGCA 59.930 47.619 0.00 0.00 0.00 5.10
2331 2377 2.081462 CCGGTCCTTTTTAGTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
2332 2378 3.055963 TCCGGTCCTTTTTAGTTCGCATA 60.056 43.478 0.00 0.00 0.00 3.14
2333 2379 3.875134 CCGGTCCTTTTTAGTTCGCATAT 59.125 43.478 0.00 0.00 0.00 1.78
2334 2380 5.051816 CCGGTCCTTTTTAGTTCGCATATA 58.948 41.667 0.00 0.00 0.00 0.86
2335 2381 5.524646 CCGGTCCTTTTTAGTTCGCATATAA 59.475 40.000 0.00 0.00 0.00 0.98
2336 2382 6.292703 CCGGTCCTTTTTAGTTCGCATATAAG 60.293 42.308 0.00 0.00 0.00 1.73
2337 2383 6.257193 CGGTCCTTTTTAGTTCGCATATAAGT 59.743 38.462 0.00 0.00 0.00 2.24
2338 2384 7.201582 CGGTCCTTTTTAGTTCGCATATAAGTT 60.202 37.037 0.00 0.00 0.00 2.66
2339 2385 8.456471 GGTCCTTTTTAGTTCGCATATAAGTTT 58.544 33.333 0.00 0.00 0.00 2.66
2340 2386 9.836076 GTCCTTTTTAGTTCGCATATAAGTTTT 57.164 29.630 0.00 0.00 0.00 2.43
2341 2387 9.834628 TCCTTTTTAGTTCGCATATAAGTTTTG 57.165 29.630 0.00 0.00 0.00 2.44
2342 2388 9.620660 CCTTTTTAGTTCGCATATAAGTTTTGT 57.379 29.630 0.00 0.00 0.00 2.83
2344 2390 9.615295 TTTTTAGTTCGCATATAAGTTTTGTCC 57.385 29.630 0.00 0.00 0.00 4.02
2345 2391 5.813080 AGTTCGCATATAAGTTTTGTCCC 57.187 39.130 0.00 0.00 0.00 4.46
2346 2392 5.250200 AGTTCGCATATAAGTTTTGTCCCA 58.750 37.500 0.00 0.00 0.00 4.37
2347 2393 5.708230 AGTTCGCATATAAGTTTTGTCCCAA 59.292 36.000 0.00 0.00 0.00 4.12
2348 2394 5.811399 TCGCATATAAGTTTTGTCCCAAG 57.189 39.130 0.00 0.00 0.00 3.61
2349 2395 5.250200 TCGCATATAAGTTTTGTCCCAAGT 58.750 37.500 0.00 0.00 0.00 3.16
2350 2396 5.353123 TCGCATATAAGTTTTGTCCCAAGTC 59.647 40.000 0.00 0.00 0.00 3.01
2351 2397 5.123186 CGCATATAAGTTTTGTCCCAAGTCA 59.877 40.000 0.00 0.00 0.00 3.41
2352 2398 6.348950 CGCATATAAGTTTTGTCCCAAGTCAA 60.349 38.462 0.00 0.00 0.00 3.18
2353 2399 7.375053 GCATATAAGTTTTGTCCCAAGTCAAA 58.625 34.615 0.00 0.00 30.64 2.69
2354 2400 7.328493 GCATATAAGTTTTGTCCCAAGTCAAAC 59.672 37.037 0.00 0.00 31.99 2.93
2355 2401 8.576442 CATATAAGTTTTGTCCCAAGTCAAACT 58.424 33.333 0.00 0.00 31.99 2.66
2356 2402 9.802039 ATATAAGTTTTGTCCCAAGTCAAACTA 57.198 29.630 0.00 0.00 31.99 2.24
2357 2403 8.706322 ATAAGTTTTGTCCCAAGTCAAACTAT 57.294 30.769 0.00 0.00 31.99 2.12
2358 2404 7.418337 AAGTTTTGTCCCAAGTCAAACTATT 57.582 32.000 0.00 0.00 31.99 1.73
2359 2405 7.418337 AGTTTTGTCCCAAGTCAAACTATTT 57.582 32.000 0.00 0.00 31.99 1.40
2360 2406 7.489160 AGTTTTGTCCCAAGTCAAACTATTTC 58.511 34.615 0.00 0.00 31.99 2.17
2361 2407 7.342026 AGTTTTGTCCCAAGTCAAACTATTTCT 59.658 33.333 0.00 0.00 31.99 2.52
2362 2408 8.626526 GTTTTGTCCCAAGTCAAACTATTTCTA 58.373 33.333 0.00 0.00 31.99 2.10
2363 2409 7.739498 TTGTCCCAAGTCAAACTATTTCTAC 57.261 36.000 0.00 0.00 0.00 2.59
2364 2410 7.074653 TGTCCCAAGTCAAACTATTTCTACT 57.925 36.000 0.00 0.00 0.00 2.57
2365 2411 7.514721 TGTCCCAAGTCAAACTATTTCTACTT 58.485 34.615 0.00 0.00 0.00 2.24
2366 2412 7.996644 TGTCCCAAGTCAAACTATTTCTACTTT 59.003 33.333 0.00 0.00 0.00 2.66
2367 2413 8.290325 GTCCCAAGTCAAACTATTTCTACTTTG 58.710 37.037 0.00 0.00 0.00 2.77
2368 2414 8.215050 TCCCAAGTCAAACTATTTCTACTTTGA 58.785 33.333 0.00 0.00 31.68 2.69
2369 2415 8.290325 CCCAAGTCAAACTATTTCTACTTTGAC 58.710 37.037 12.19 12.19 46.84 3.18
2388 2434 9.588096 ACTTTGACCAAATTTATAGGAAAGAGT 57.412 29.630 11.26 3.83 0.00 3.24
2391 2437 9.457436 TTGACCAAATTTATAGGAAAGAGTACC 57.543 33.333 0.28 0.00 0.00 3.34
2392 2438 8.607713 TGACCAAATTTATAGGAAAGAGTACCA 58.392 33.333 0.28 0.00 0.00 3.25
2393 2439 9.457436 GACCAAATTTATAGGAAAGAGTACCAA 57.543 33.333 0.28 0.00 0.00 3.67
2394 2440 9.239551 ACCAAATTTATAGGAAAGAGTACCAAC 57.760 33.333 0.28 0.00 0.00 3.77
2395 2441 9.238368 CCAAATTTATAGGAAAGAGTACCAACA 57.762 33.333 0.00 0.00 0.00 3.33
2405 2451 9.614792 AGGAAAGAGTACCAACATTCATAATAC 57.385 33.333 0.00 0.00 0.00 1.89
2406 2452 8.837389 GGAAAGAGTACCAACATTCATAATACC 58.163 37.037 0.00 0.00 0.00 2.73
2407 2453 9.391006 GAAAGAGTACCAACATTCATAATACCA 57.609 33.333 0.00 0.00 0.00 3.25
2408 2454 9.747898 AAAGAGTACCAACATTCATAATACCAA 57.252 29.630 0.00 0.00 0.00 3.67
2409 2455 9.747898 AAGAGTACCAACATTCATAATACCAAA 57.252 29.630 0.00 0.00 0.00 3.28
2410 2456 9.920946 AGAGTACCAACATTCATAATACCAAAT 57.079 29.630 0.00 0.00 0.00 2.32
2412 2458 9.693739 AGTACCAACATTCATAATACCAAATCA 57.306 29.630 0.00 0.00 0.00 2.57
2524 2570 5.132897 ACTTTGCAAAGTTTGACTTGACA 57.867 34.783 33.85 3.64 46.52 3.58
2525 2571 5.163513 ACTTTGCAAAGTTTGACTTGACAG 58.836 37.500 33.85 10.80 46.52 3.51
2526 2572 5.048083 ACTTTGCAAAGTTTGACTTGACAGA 60.048 36.000 33.85 0.00 46.52 3.41
2527 2573 5.384063 TTGCAAAGTTTGACTTGACAGAA 57.616 34.783 19.82 0.00 38.66 3.02
2528 2574 5.384063 TGCAAAGTTTGACTTGACAGAAA 57.616 34.783 19.82 0.00 38.66 2.52
2529 2575 5.964758 TGCAAAGTTTGACTTGACAGAAAT 58.035 33.333 19.82 0.00 38.66 2.17
2530 2576 6.035843 TGCAAAGTTTGACTTGACAGAAATC 58.964 36.000 19.82 0.00 38.66 2.17
2531 2577 6.127647 TGCAAAGTTTGACTTGACAGAAATCT 60.128 34.615 19.82 0.00 38.66 2.40
2532 2578 7.066887 TGCAAAGTTTGACTTGACAGAAATCTA 59.933 33.333 19.82 0.00 38.66 1.98
2533 2579 7.915397 GCAAAGTTTGACTTGACAGAAATCTAA 59.085 33.333 19.82 0.00 38.66 2.10
2534 2580 9.956720 CAAAGTTTGACTTGACAGAAATCTAAT 57.043 29.630 10.19 0.00 38.66 1.73
2538 2584 9.495754 GTTTGACTTGACAGAAATCTAATATGC 57.504 33.333 0.00 0.00 0.00 3.14
2539 2585 8.791327 TTGACTTGACAGAAATCTAATATGCA 57.209 30.769 0.00 0.00 0.00 3.96
2540 2586 8.429493 TGACTTGACAGAAATCTAATATGCAG 57.571 34.615 0.00 0.00 0.00 4.41
2541 2587 8.260114 TGACTTGACAGAAATCTAATATGCAGA 58.740 33.333 0.00 0.00 0.00 4.26
2542 2588 8.659925 ACTTGACAGAAATCTAATATGCAGAG 57.340 34.615 0.00 0.00 0.00 3.35
2543 2589 8.263640 ACTTGACAGAAATCTAATATGCAGAGT 58.736 33.333 0.00 0.00 0.00 3.24
2544 2590 9.755804 CTTGACAGAAATCTAATATGCAGAGTA 57.244 33.333 0.00 0.00 0.00 2.59
2553 2599 8.910351 ATCTAATATGCAGAGTAAAAAGGACC 57.090 34.615 0.00 0.00 0.00 4.46
2554 2600 6.984474 TCTAATATGCAGAGTAAAAAGGACCG 59.016 38.462 0.00 0.00 0.00 4.79
2555 2601 2.178912 TGCAGAGTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
2556 2602 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
2557 2603 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
2741 2787 5.830991 TGTTTTTGGGTGATACTTAGCTGTT 59.169 36.000 0.00 0.00 0.00 3.16
2743 2789 4.901197 TTGGGTGATACTTAGCTGTTGA 57.099 40.909 0.00 0.00 0.00 3.18
2890 2936 9.170890 TCAGGTATAATCATCTATGGAAGGTTT 57.829 33.333 0.00 0.00 0.00 3.27
2940 2986 8.934697 AGGAGGTAACATAATGCTCTATGTTTA 58.065 33.333 21.36 10.45 45.83 2.01
2989 3057 6.042552 ACTCCACAGAAAGAGAAAATGAGAGA 59.957 38.462 0.00 0.00 34.13 3.10
3200 3275 8.587111 GTCTGTTTTTGAAAGAAAAAGTAGCTG 58.413 33.333 0.00 0.00 31.05 4.24
3201 3276 7.759433 TCTGTTTTTGAAAGAAAAAGTAGCTGG 59.241 33.333 0.00 0.00 31.05 4.85
3202 3277 7.382898 TGTTTTTGAAAGAAAAAGTAGCTGGT 58.617 30.769 0.00 0.00 31.05 4.00
3203 3278 7.330700 TGTTTTTGAAAGAAAAAGTAGCTGGTG 59.669 33.333 0.00 0.00 31.05 4.17
3204 3279 4.568152 TGAAAGAAAAAGTAGCTGGTGC 57.432 40.909 0.00 0.00 40.05 5.01
3251 3340 3.695830 TGGGTTCTATGTTCTCCACAC 57.304 47.619 0.00 0.00 38.61 3.82
3348 3437 2.136298 TTTCACTGTGGAACTTGCCA 57.864 45.000 8.11 0.00 38.04 4.92
3503 3598 7.763172 ATCTGATTTTTCTACGTGCTTAGAG 57.237 36.000 0.00 0.00 29.67 2.43
3519 3614 7.468768 CGTGCTTAGAGATCTACAGATTTACCA 60.469 40.741 0.00 0.00 34.37 3.25
3520 3615 8.364142 GTGCTTAGAGATCTACAGATTTACCAT 58.636 37.037 0.00 0.00 34.37 3.55
3522 3617 8.802267 GCTTAGAGATCTACAGATTTACCATCT 58.198 37.037 0.00 0.00 34.37 2.90
3531 3626 6.743575 ACAGATTTACCATCTTACTTGCAC 57.256 37.500 0.00 0.00 0.00 4.57
3534 3629 6.319658 CAGATTTACCATCTTACTTGCACCAT 59.680 38.462 0.00 0.00 0.00 3.55
3837 3936 6.446318 TCAAGACATGGTGAAAAATTGCTAC 58.554 36.000 0.00 0.00 0.00 3.58
3838 3937 5.391312 AGACATGGTGAAAAATTGCTACC 57.609 39.130 0.00 0.00 0.00 3.18
3839 3938 4.832266 AGACATGGTGAAAAATTGCTACCA 59.168 37.500 0.00 0.00 44.66 3.25
3903 4012 4.393834 TCAGCCTGCACATTGTTTTACTA 58.606 39.130 0.00 0.00 0.00 1.82
3948 6294 9.669353 TGTAAAGTTTACTTGTCTAGTACGAAG 57.331 33.333 22.87 0.00 39.05 3.79
3978 6339 7.884877 TCACTGCCCATGGATATTTATTTCTAG 59.115 37.037 15.22 0.00 0.00 2.43
4061 6425 8.100164 TCTTGTTATTACATCATTCACTCACCA 58.900 33.333 0.00 0.00 33.44 4.17
4082 6446 3.757745 ATTTCTTTACGACAATGCCCG 57.242 42.857 0.00 0.00 0.00 6.13
4085 6449 2.768698 TCTTTACGACAATGCCCGAAA 58.231 42.857 2.85 0.07 0.00 3.46
4173 6988 6.760770 CCAGTTTCCAGAATGCTTTTTGTTAA 59.239 34.615 2.76 0.00 31.97 2.01
4259 7082 4.223255 GGTCCTGTTCTTCTAGGCTTTACT 59.777 45.833 0.00 0.00 34.00 2.24
4261 7084 4.838986 TCCTGTTCTTCTAGGCTTTACTGT 59.161 41.667 0.00 0.00 34.00 3.55
4262 7085 5.307196 TCCTGTTCTTCTAGGCTTTACTGTT 59.693 40.000 0.00 0.00 34.00 3.16
4286 7109 4.725556 TTCAGTCATAAAACAGACGTGC 57.274 40.909 0.00 0.00 39.67 5.34
4287 7110 3.064207 TCAGTCATAAAACAGACGTGCC 58.936 45.455 0.00 0.00 39.67 5.01
4298 7121 1.531149 CAGACGTGCCCTTGTAACTTG 59.469 52.381 0.00 0.00 0.00 3.16
4309 7132 5.222631 CCCTTGTAACTTGCTGAAAATCAC 58.777 41.667 0.00 0.00 0.00 3.06
4350 7175 8.814235 GGATCATTTCAATGCTTTGTCTTATTG 58.186 33.333 11.67 0.00 36.36 1.90
4351 7176 9.577110 GATCATTTCAATGCTTTGTCTTATTGA 57.423 29.630 11.67 0.45 37.66 2.57
4393 7218 6.636454 TTTCCTGATAGATGTTTACCCTGT 57.364 37.500 0.00 0.00 0.00 4.00
4456 7281 8.084590 ACAGTTGTTGTACTATACTTTGAAGC 57.915 34.615 0.00 0.00 38.56 3.86
4472 7297 3.668447 TGAAGCTTGAACTGTGATCCTC 58.332 45.455 2.10 0.00 0.00 3.71
4512 7337 3.826157 CTCCAGGTTAATGCTGTTTTCCA 59.174 43.478 0.00 0.00 0.00 3.53
4530 7355 3.620488 TCCAACAAAGATGCTGATACCC 58.380 45.455 0.00 0.00 0.00 3.69
4566 7391 7.863722 TCCTTGTACCTTTAATTATACCTGCA 58.136 34.615 0.00 0.00 0.00 4.41
4663 7488 2.413239 CGATTGCTCATGAAAACGTGCT 60.413 45.455 0.00 0.00 0.00 4.40
4698 7531 8.110860 ACTGTAAATCTGTTATTCTTTGGTGG 57.889 34.615 0.00 0.00 0.00 4.61
4699 7532 7.724061 ACTGTAAATCTGTTATTCTTTGGTGGT 59.276 33.333 0.00 0.00 0.00 4.16
4705 7538 3.964031 TGTTATTCTTTGGTGGTGCCTTT 59.036 39.130 0.00 0.00 38.35 3.11
4724 7557 6.030228 GCCTTTGAATAGCAACTAACATCAC 58.970 40.000 0.00 0.00 35.91 3.06
4725 7558 6.127897 GCCTTTGAATAGCAACTAACATCACT 60.128 38.462 0.00 0.00 35.91 3.41
4726 7559 7.575720 GCCTTTGAATAGCAACTAACATCACTT 60.576 37.037 0.00 0.00 35.91 3.16
4727 7560 7.752239 CCTTTGAATAGCAACTAACATCACTTG 59.248 37.037 0.00 0.00 35.91 3.16
4728 7561 7.744087 TTGAATAGCAACTAACATCACTTGT 57.256 32.000 0.00 0.00 41.53 3.16
4729 7562 7.364522 TGAATAGCAACTAACATCACTTGTC 57.635 36.000 0.00 0.00 37.68 3.18
4730 7563 6.090763 TGAATAGCAACTAACATCACTTGTCG 59.909 38.462 0.00 0.00 37.68 4.35
4731 7564 3.067106 AGCAACTAACATCACTTGTCGG 58.933 45.455 0.00 0.00 37.68 4.79
4732 7565 3.064207 GCAACTAACATCACTTGTCGGA 58.936 45.455 0.00 0.00 37.68 4.55
4733 7566 3.120649 GCAACTAACATCACTTGTCGGAC 60.121 47.826 0.00 0.00 37.68 4.79
4734 7567 4.307432 CAACTAACATCACTTGTCGGACT 58.693 43.478 9.88 0.00 37.68 3.85
4735 7568 5.466819 CAACTAACATCACTTGTCGGACTA 58.533 41.667 9.88 0.43 37.68 2.59
4736 7569 5.312120 ACTAACATCACTTGTCGGACTAG 57.688 43.478 16.31 16.31 37.68 2.57
4737 7570 5.008331 ACTAACATCACTTGTCGGACTAGA 58.992 41.667 23.09 9.92 37.68 2.43
4738 7571 5.652891 ACTAACATCACTTGTCGGACTAGAT 59.347 40.000 23.09 11.51 37.68 1.98
4739 7572 4.377839 ACATCACTTGTCGGACTAGATG 57.622 45.455 23.09 21.43 37.85 2.90
4740 7573 3.131223 ACATCACTTGTCGGACTAGATGG 59.869 47.826 23.09 13.09 36.59 3.51
4741 7574 2.803956 TCACTTGTCGGACTAGATGGT 58.196 47.619 23.09 2.03 0.00 3.55
4742 7575 3.162666 TCACTTGTCGGACTAGATGGTT 58.837 45.455 23.09 0.87 0.00 3.67
4743 7576 3.576982 TCACTTGTCGGACTAGATGGTTT 59.423 43.478 23.09 0.20 0.00 3.27
4744 7577 3.927142 CACTTGTCGGACTAGATGGTTTC 59.073 47.826 23.09 0.00 0.00 2.78
4745 7578 3.833070 ACTTGTCGGACTAGATGGTTTCT 59.167 43.478 23.09 0.00 38.57 2.52
4746 7579 4.082136 ACTTGTCGGACTAGATGGTTTCTC 60.082 45.833 23.09 0.00 35.79 2.87
4747 7580 2.758979 TGTCGGACTAGATGGTTTCTCC 59.241 50.000 9.88 0.00 35.79 3.71
4748 7581 2.101082 GTCGGACTAGATGGTTTCTCCC 59.899 54.545 0.00 0.00 35.79 4.30
4749 7582 2.024273 TCGGACTAGATGGTTTCTCCCT 60.024 50.000 0.00 0.00 35.79 4.20
4750 7583 2.101582 CGGACTAGATGGTTTCTCCCTG 59.898 54.545 0.00 0.00 35.79 4.45
4751 7584 2.158885 GGACTAGATGGTTTCTCCCTGC 60.159 54.545 0.00 0.00 35.79 4.85
4752 7585 1.482593 ACTAGATGGTTTCTCCCTGCG 59.517 52.381 0.00 0.00 35.79 5.18
4753 7586 0.178068 TAGATGGTTTCTCCCTGCGC 59.822 55.000 0.00 0.00 35.79 6.09
4754 7587 1.078143 GATGGTTTCTCCCTGCGCT 60.078 57.895 9.73 0.00 34.77 5.92
4755 7588 0.178068 GATGGTTTCTCCCTGCGCTA 59.822 55.000 9.73 0.00 34.77 4.26
4756 7589 0.839946 ATGGTTTCTCCCTGCGCTAT 59.160 50.000 9.73 0.00 34.77 2.97
4757 7590 1.491668 TGGTTTCTCCCTGCGCTATA 58.508 50.000 9.73 0.00 34.77 1.31
4758 7591 1.138266 TGGTTTCTCCCTGCGCTATAC 59.862 52.381 9.73 0.00 34.77 1.47
4759 7592 1.413077 GGTTTCTCCCTGCGCTATACT 59.587 52.381 9.73 0.00 0.00 2.12
4760 7593 2.546162 GGTTTCTCCCTGCGCTATACTC 60.546 54.545 9.73 0.00 0.00 2.59
4781 7614 2.496871 CCTTAGCAATGGCCAACATCAA 59.503 45.455 10.96 0.36 39.40 2.57
4783 7616 4.383335 CCTTAGCAATGGCCAACATCAATT 60.383 41.667 10.96 0.00 39.40 2.32
4784 7617 2.980568 AGCAATGGCCAACATCAATTG 58.019 42.857 10.96 9.31 39.40 2.32
4785 7618 2.303600 AGCAATGGCCAACATCAATTGT 59.696 40.909 10.96 0.00 39.40 2.71
4786 7619 2.674357 GCAATGGCCAACATCAATTGTC 59.326 45.455 10.96 0.68 39.40 3.18
4788 7621 4.571919 CAATGGCCAACATCAATTGTCTT 58.428 39.130 10.96 0.00 39.40 3.01
4790 7623 3.499338 TGGCCAACATCAATTGTCTTCT 58.501 40.909 0.61 0.00 37.68 2.85
4791 7624 3.256383 TGGCCAACATCAATTGTCTTCTG 59.744 43.478 0.61 0.09 37.68 3.02
4792 7625 3.248266 GCCAACATCAATTGTCTTCTGC 58.752 45.455 5.13 0.07 37.68 4.26
4793 7626 3.305539 GCCAACATCAATTGTCTTCTGCA 60.306 43.478 5.13 0.00 37.68 4.41
4794 7627 4.796946 GCCAACATCAATTGTCTTCTGCAA 60.797 41.667 5.13 0.00 37.68 4.08
4803 7636 8.114331 TCAATTGTCTTCTGCAATAGATTGTT 57.886 30.769 5.13 0.00 39.88 2.83
4807 7642 8.791327 TTGTCTTCTGCAATAGATTGTTGATA 57.209 30.769 4.27 0.00 39.88 2.15
4821 7656 8.945481 AGATTGTTGATATCTCAGTTCTCAAG 57.055 34.615 3.98 0.00 31.68 3.02
4822 7657 8.538701 AGATTGTTGATATCTCAGTTCTCAAGT 58.461 33.333 3.98 0.00 31.68 3.16
4823 7658 9.809096 GATTGTTGATATCTCAGTTCTCAAGTA 57.191 33.333 3.98 0.00 31.68 2.24
4857 7692 6.173191 GCACCGTTGCTACTCTTAATTTAA 57.827 37.500 0.00 0.00 46.17 1.52
4881 7721 2.294074 TGTTGGAACACTGGTTGCTAC 58.706 47.619 6.69 6.69 45.88 3.58
4883 7723 2.949644 GTTGGAACACTGGTTGCTACTT 59.050 45.455 0.00 0.00 43.71 2.24
4884 7724 2.571212 TGGAACACTGGTTGCTACTTG 58.429 47.619 0.00 0.00 44.73 3.16
4896 7736 8.512138 ACTGGTTGCTACTTGTAATTTATGTTC 58.488 33.333 0.00 0.00 0.00 3.18
5007 7854 3.676172 GTGTCAAATGGTCAACATGCATG 59.324 43.478 25.09 25.09 40.44 4.06
5045 7892 1.203287 GCCTTTGCTGATTTCCTGGAC 59.797 52.381 0.00 0.00 33.53 4.02
5068 7923 9.991388 GGACGCAACTTTTATTATTGTATGTAA 57.009 29.630 0.00 0.00 0.00 2.41
5070 7925 9.498307 ACGCAACTTTTATTATTGTATGTAAGC 57.502 29.630 0.00 0.00 0.00 3.09
5096 7951 5.464389 ACGTTATAAATGGCACGTTATCTCC 59.536 40.000 8.18 0.02 43.10 3.71
5118 7982 4.026804 CCGTTGACATAAGTTATCGACAGC 60.027 45.833 0.00 0.00 30.66 4.40
5128 7992 4.801891 AGTTATCGACAGCGTCAAGTTTA 58.198 39.130 8.91 0.00 38.98 2.01
5140 8004 3.064931 GTCAAGTTTACGCTAGTGGCTT 58.935 45.455 8.42 3.90 39.13 4.35
5143 8007 2.960819 AGTTTACGCTAGTGGCTTCTG 58.039 47.619 8.42 0.00 39.13 3.02
5221 8085 3.091545 CAAAAAGCAGCTATTCCCCTGA 58.908 45.455 0.00 0.00 0.00 3.86
5278 8143 3.225235 GGCTGAGCCTGGTAGGAG 58.775 66.667 17.96 0.00 46.69 3.69
5279 8144 1.687493 GGCTGAGCCTGGTAGGAGT 60.687 63.158 17.96 0.00 46.69 3.85
5280 8145 0.397254 GGCTGAGCCTGGTAGGAGTA 60.397 60.000 17.96 0.00 46.69 2.59
5281 8146 1.710816 GCTGAGCCTGGTAGGAGTAT 58.289 55.000 0.00 0.00 37.67 2.12
5282 8147 2.491086 GGCTGAGCCTGGTAGGAGTATA 60.491 54.545 17.96 0.00 46.69 1.47
5283 8148 3.436243 GCTGAGCCTGGTAGGAGTATAT 58.564 50.000 0.00 0.00 37.67 0.86
5288 8153 4.675038 AGCCTGGTAGGAGTATATACCAC 58.325 47.826 9.32 3.04 45.05 4.16
5289 8154 3.442977 GCCTGGTAGGAGTATATACCACG 59.557 52.174 9.32 0.00 45.05 4.94
5290 8155 4.660168 CCTGGTAGGAGTATATACCACGT 58.340 47.826 9.32 8.28 45.05 4.49
5291 8156 5.804446 GCCTGGTAGGAGTATATACCACGTA 60.804 48.000 9.32 7.42 45.05 3.57
5325 8190 7.476540 AAAAAGTTACCCCAGGATATTTCAC 57.523 36.000 0.00 0.00 0.00 3.18
5326 8191 4.417426 AGTTACCCCAGGATATTTCACG 57.583 45.455 0.00 0.00 0.00 4.35
5350 8218 7.271868 ACGTTTTTCAATATAAAAAGGCGCTAC 59.728 33.333 7.64 0.00 43.15 3.58
5362 8230 0.318445 GGCGCTACGATATTCCACGT 60.318 55.000 7.64 0.00 44.72 4.49
5363 8231 1.069022 GGCGCTACGATATTCCACGTA 60.069 52.381 7.64 0.00 42.61 3.57
5364 8232 1.974680 GCGCTACGATATTCCACGTAC 59.025 52.381 0.00 0.00 42.61 3.67
5403 8271 2.163815 CCATCAAGCAAAGCTCCTCTTG 59.836 50.000 12.78 12.78 38.25 3.02
5404 8272 2.645838 TCAAGCAAAGCTCCTCTTGT 57.354 45.000 16.37 0.00 38.25 3.16
5405 8273 2.224606 TCAAGCAAAGCTCCTCTTGTG 58.775 47.619 16.37 2.38 38.25 3.33
5407 8275 1.602311 AGCAAAGCTCCTCTTGTGTG 58.398 50.000 0.00 0.00 30.62 3.82
5408 8276 0.595095 GCAAAGCTCCTCTTGTGTGG 59.405 55.000 0.00 0.00 34.67 4.17
5411 8279 3.476552 CAAAGCTCCTCTTGTGTGGTTA 58.523 45.455 0.00 0.00 34.67 2.85
5412 8280 4.074970 CAAAGCTCCTCTTGTGTGGTTAT 58.925 43.478 0.00 0.00 34.67 1.89
5417 8285 4.083271 GCTCCTCTTGTGTGGTTATTGAAC 60.083 45.833 0.00 0.00 34.56 3.18
5441 8316 0.847373 TAACAGCTTCCAACACCCCA 59.153 50.000 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
222 223 2.202810 TCTGACAACGCACGCACA 60.203 55.556 0.00 0.00 0.00 4.57
245 246 0.320771 AGACCGGAACATCACAGCAC 60.321 55.000 9.46 0.00 0.00 4.40
247 248 2.094182 TCTAAGACCGGAACATCACAGC 60.094 50.000 9.46 0.00 0.00 4.40
263 264 2.234908 AGCTACACCACCAAGCTCTAAG 59.765 50.000 0.00 0.00 42.89 2.18
265 266 1.938585 AGCTACACCACCAAGCTCTA 58.061 50.000 0.00 0.00 42.89 2.43
283 285 2.093973 AGAGCGGACAGGAACATGTTAG 60.094 50.000 11.95 7.31 32.25 2.34
313 315 0.773644 AGGGGCTACATATGGCAAGG 59.226 55.000 7.80 0.00 32.95 3.61
329 331 2.880268 TGATAATTCATCGCAGCAAGGG 59.120 45.455 0.00 0.00 36.33 3.95
369 371 7.514280 CGAACACTGAAACGAGATTCATATGAG 60.514 40.741 5.39 0.00 38.55 2.90
383 385 6.967199 AGATTCAGAAAAACGAACACTGAAAC 59.033 34.615 0.00 0.00 45.89 2.78
395 397 8.137437 TCCAACAGAAATGAGATTCAGAAAAAC 58.863 33.333 0.00 0.00 0.00 2.43
401 403 6.150641 ACACATCCAACAGAAATGAGATTCAG 59.849 38.462 0.00 0.00 0.00 3.02
402 404 6.005823 ACACATCCAACAGAAATGAGATTCA 58.994 36.000 0.00 0.00 0.00 2.57
403 405 6.506500 ACACATCCAACAGAAATGAGATTC 57.493 37.500 0.00 0.00 0.00 2.52
404 406 7.120285 CAGTACACATCCAACAGAAATGAGATT 59.880 37.037 0.00 0.00 0.00 2.40
405 407 6.596888 CAGTACACATCCAACAGAAATGAGAT 59.403 38.462 0.00 0.00 0.00 2.75
406 408 5.934043 CAGTACACATCCAACAGAAATGAGA 59.066 40.000 0.00 0.00 0.00 3.27
408 410 5.620206 ACAGTACACATCCAACAGAAATGA 58.380 37.500 0.00 0.00 0.00 2.57
409 411 5.702670 AGACAGTACACATCCAACAGAAATG 59.297 40.000 0.00 0.00 0.00 2.32
410 412 5.869579 AGACAGTACACATCCAACAGAAAT 58.130 37.500 0.00 0.00 0.00 2.17
416 418 5.057149 ACAGAAAGACAGTACACATCCAAC 58.943 41.667 0.00 0.00 0.00 3.77
418 420 4.955811 ACAGAAAGACAGTACACATCCA 57.044 40.909 0.00 0.00 0.00 3.41
419 421 5.542779 AGAACAGAAAGACAGTACACATCC 58.457 41.667 0.00 0.00 0.00 3.51
496 498 3.492102 AGATTATTATGCGGCAGTGGT 57.508 42.857 9.25 0.00 0.00 4.16
498 500 5.391310 GGATGAAGATTATTATGCGGCAGTG 60.391 44.000 9.25 0.00 0.00 3.66
499 501 4.697352 GGATGAAGATTATTATGCGGCAGT 59.303 41.667 9.25 0.00 0.00 4.40
500 502 4.201753 CGGATGAAGATTATTATGCGGCAG 60.202 45.833 9.25 0.00 31.95 4.85
515 517 2.158755 AGGGGCTAATCAACGGATGAAG 60.159 50.000 0.00 0.00 42.54 3.02
523 525 1.065709 TGACGGAAGGGGCTAATCAAC 60.066 52.381 0.00 0.00 0.00 3.18
532 534 1.392589 CAATCCAATGACGGAAGGGG 58.607 55.000 0.00 0.00 38.95 4.79
534 536 0.378257 CGCAATCCAATGACGGAAGG 59.622 55.000 0.00 0.00 38.95 3.46
535 537 1.062587 GACGCAATCCAATGACGGAAG 59.937 52.381 0.00 0.00 38.95 3.46
537 539 2.762360 GACGCAATCCAATGACGGA 58.238 52.632 0.00 0.00 40.07 4.69
553 555 4.722361 AATAGAGTGGAAGACGAAGGAC 57.278 45.455 0.00 0.00 0.00 3.85
554 556 5.740290 AAAATAGAGTGGAAGACGAAGGA 57.260 39.130 0.00 0.00 0.00 3.36
559 561 7.764443 TCCAGAATTAAAATAGAGTGGAAGACG 59.236 37.037 0.00 0.00 29.85 4.18
560 562 9.620259 ATCCAGAATTAAAATAGAGTGGAAGAC 57.380 33.333 0.00 0.00 36.46 3.01
592 597 5.163834 GCGTAACACCATCCGAAAATTAAGA 60.164 40.000 0.00 0.00 0.00 2.10
597 602 2.418628 CAGCGTAACACCATCCGAAAAT 59.581 45.455 0.00 0.00 0.00 1.82
598 603 1.801771 CAGCGTAACACCATCCGAAAA 59.198 47.619 0.00 0.00 0.00 2.29
602 607 0.930310 CATCAGCGTAACACCATCCG 59.070 55.000 0.00 0.00 0.00 4.18
603 608 1.134521 TCCATCAGCGTAACACCATCC 60.135 52.381 0.00 0.00 0.00 3.51
604 609 2.159099 TCTCCATCAGCGTAACACCATC 60.159 50.000 0.00 0.00 0.00 3.51
605 610 1.831106 TCTCCATCAGCGTAACACCAT 59.169 47.619 0.00 0.00 0.00 3.55
606 611 1.262417 TCTCCATCAGCGTAACACCA 58.738 50.000 0.00 0.00 0.00 4.17
607 612 2.159099 TCATCTCCATCAGCGTAACACC 60.159 50.000 0.00 0.00 0.00 4.16
609 614 3.447229 TCTTCATCTCCATCAGCGTAACA 59.553 43.478 0.00 0.00 0.00 2.41
610 615 4.046938 TCTTCATCTCCATCAGCGTAAC 57.953 45.455 0.00 0.00 0.00 2.50
611 616 4.081697 TGTTCTTCATCTCCATCAGCGTAA 60.082 41.667 0.00 0.00 0.00 3.18
612 617 3.447229 TGTTCTTCATCTCCATCAGCGTA 59.553 43.478 0.00 0.00 0.00 4.42
613 618 2.234661 TGTTCTTCATCTCCATCAGCGT 59.765 45.455 0.00 0.00 0.00 5.07
614 619 2.864946 CTGTTCTTCATCTCCATCAGCG 59.135 50.000 0.00 0.00 0.00 5.18
615 620 3.118482 TCCTGTTCTTCATCTCCATCAGC 60.118 47.826 0.00 0.00 0.00 4.26
616 621 4.750021 TCCTGTTCTTCATCTCCATCAG 57.250 45.455 0.00 0.00 0.00 2.90
636 642 0.304705 AAAATCATGACGCGGCGATC 59.695 50.000 30.94 21.41 0.00 3.69
645 651 2.993899 ACGGTGAGACGAAAATCATGAC 59.006 45.455 0.00 0.00 37.61 3.06
655 661 1.250328 ACATAACCACGGTGAGACGA 58.750 50.000 10.28 0.00 37.61 4.20
660 666 2.158798 TGGAACAACATAACCACGGTGA 60.159 45.455 10.28 0.00 31.92 4.02
661 667 2.222886 TGGAACAACATAACCACGGTG 58.777 47.619 0.00 0.00 31.92 4.94
662 668 2.642154 TGGAACAACATAACCACGGT 57.358 45.000 0.00 0.00 31.92 4.83
683 689 9.525826 GGGAACAAATATGGAAGATATCTCAAT 57.474 33.333 5.51 3.14 0.00 2.57
684 690 7.944554 GGGGAACAAATATGGAAGATATCTCAA 59.055 37.037 5.51 0.00 0.00 3.02
686 692 7.461749 TGGGGAACAAATATGGAAGATATCTC 58.538 38.462 5.51 0.00 0.00 2.75
687 693 7.295672 TCTGGGGAACAAATATGGAAGATATCT 59.704 37.037 0.00 0.00 0.00 1.98
688 694 7.461749 TCTGGGGAACAAATATGGAAGATATC 58.538 38.462 0.00 0.00 0.00 1.63
689 695 7.406620 TCTGGGGAACAAATATGGAAGATAT 57.593 36.000 0.00 0.00 0.00 1.63
691 697 5.732331 TCTGGGGAACAAATATGGAAGAT 57.268 39.130 0.00 0.00 0.00 2.40
693 699 6.796785 AAATCTGGGGAACAAATATGGAAG 57.203 37.500 0.00 0.00 0.00 3.46
694 700 6.500049 ACAAAATCTGGGGAACAAATATGGAA 59.500 34.615 0.00 0.00 0.00 3.53
737 744 2.276116 AAAGAGGCAGACGCGGAGA 61.276 57.895 12.47 0.00 39.92 3.71
746 753 3.130160 GAGGCGGCAAAGAGGCAG 61.130 66.667 13.08 0.00 44.47 4.85
761 768 2.260869 CGCCAACCACCAACAGGAG 61.261 63.158 0.00 0.00 0.00 3.69
765 772 1.826054 CTTCCGCCAACCACCAACA 60.826 57.895 0.00 0.00 0.00 3.33
791 798 3.064931 AGCGTTGGTTTTCAGCTACTAC 58.935 45.455 0.00 0.00 36.28 2.73
1230 1241 1.760086 CAGATCTGAGGAGGGGCGT 60.760 63.158 18.34 0.00 0.00 5.68
1260 1271 8.880991 ATCACAAAGTAAACTAGACCTAGAGA 57.119 34.615 10.74 0.00 36.97 3.10
1345 1356 2.030007 TCAAACTACCGTAAGACCCGTG 60.030 50.000 0.00 0.00 43.02 4.94
1351 1362 6.183360 GCTCTAGGAATCAAACTACCGTAAGA 60.183 42.308 0.00 0.00 43.02 2.10
1354 1365 4.951715 TGCTCTAGGAATCAAACTACCGTA 59.048 41.667 0.00 0.00 0.00 4.02
1355 1366 3.767673 TGCTCTAGGAATCAAACTACCGT 59.232 43.478 0.00 0.00 0.00 4.83
1357 1368 5.119694 CCTTGCTCTAGGAATCAAACTACC 58.880 45.833 0.00 0.00 37.50 3.18
1388 1399 5.819901 GGCTACTTTGCAGAGATCATAACTT 59.180 40.000 11.85 0.00 34.04 2.66
1389 1400 5.130145 AGGCTACTTTGCAGAGATCATAACT 59.870 40.000 11.85 0.00 34.04 2.24
1392 1403 4.406972 ACAGGCTACTTTGCAGAGATCATA 59.593 41.667 11.85 0.00 34.04 2.15
1428 1445 3.068165 CCTACAGCACATCGGATGAACTA 59.932 47.826 23.98 6.24 0.00 2.24
1516 1534 9.968743 CGATATTGTCACATAATCATGAATCAG 57.031 33.333 0.00 0.00 35.96 2.90
1541 1559 3.023946 TCCACCAAATGCAAATTGTCG 57.976 42.857 12.83 5.21 0.00 4.35
1550 1568 3.763897 ACTAGGTCAAATCCACCAAATGC 59.236 43.478 0.00 0.00 36.23 3.56
1571 1589 0.299597 CGCCGTAAGCACCGAAATAC 59.700 55.000 0.00 0.00 44.04 1.89
1573 1591 0.108709 TACGCCGTAAGCACCGAAAT 60.109 50.000 0.00 0.00 44.04 2.17
1577 1595 0.722848 AAATTACGCCGTAAGCACCG 59.277 50.000 15.55 0.00 44.04 4.94
1578 1596 3.786489 GCTTAAATTACGCCGTAAGCACC 60.786 47.826 15.55 0.00 45.01 5.01
1579 1597 3.348309 GCTTAAATTACGCCGTAAGCAC 58.652 45.455 15.55 0.00 45.01 4.40
1599 1617 1.149401 GAATAGGAGCAGGTGGGGC 59.851 63.158 0.00 0.00 0.00 5.80
1606 1624 4.590647 TGGAGATACAAGGAATAGGAGCAG 59.409 45.833 0.00 0.00 0.00 4.24
1625 1643 3.314635 GGAGCACTAGCAATCAATTGGAG 59.685 47.826 5.42 0.00 45.49 3.86
1630 1648 4.095483 CGAAAAGGAGCACTAGCAATCAAT 59.905 41.667 0.00 0.00 45.49 2.57
1650 1668 5.804692 TTGCTCAAAGTCACTAAAACGAA 57.195 34.783 0.00 0.00 0.00 3.85
1685 1703 7.954248 GCATGATTCGATCTCACAATTACATAC 59.046 37.037 0.00 0.00 0.00 2.39
1699 1717 5.675778 CAAAGTGTTTGCATGATTCGATC 57.324 39.130 0.00 0.00 33.36 3.69
1722 1741 3.058914 CCTTGTACTCTGCAAAGAAACGG 60.059 47.826 0.00 0.00 0.00 4.44
1737 1756 2.870411 GTTGTGTGAGTGGACCTTGTAC 59.130 50.000 0.00 0.00 0.00 2.90
1746 1765 2.287788 GCCATTTCTGTTGTGTGAGTGG 60.288 50.000 0.00 0.00 0.00 4.00
1794 1813 2.165641 TGCACTTCGTACAGGATAGTGG 59.834 50.000 0.00 0.00 37.33 4.00
1913 1936 9.823647 GAATAAGAACATAGAACAGGAAGATCA 57.176 33.333 0.00 0.00 0.00 2.92
1967 2013 9.486497 TGCATGCTTTCTGTTAATAATTTTCAA 57.514 25.926 20.33 0.00 0.00 2.69
1994 2040 1.591158 CACTTGCGTAACGTCAACACT 59.409 47.619 0.00 0.00 0.00 3.55
1995 2041 1.325338 ACACTTGCGTAACGTCAACAC 59.675 47.619 0.00 0.00 0.00 3.32
1998 2044 2.029486 GTCAACACTTGCGTAACGTCAA 59.971 45.455 0.00 0.00 0.00 3.18
2000 2046 1.395080 CGTCAACACTTGCGTAACGTC 60.395 52.381 0.00 0.00 0.00 4.34
2001 2047 0.573521 CGTCAACACTTGCGTAACGT 59.426 50.000 0.00 0.00 0.00 3.99
2002 2048 0.573521 ACGTCAACACTTGCGTAACG 59.426 50.000 0.00 0.00 39.99 3.18
2005 2051 1.780292 CGTAACGTCAACACTTGCGTA 59.220 47.619 0.00 0.00 40.55 4.42
2006 2052 0.573521 CGTAACGTCAACACTTGCGT 59.426 50.000 0.00 0.00 42.20 5.24
2007 2053 0.716926 GCGTAACGTCAACACTTGCG 60.717 55.000 0.00 0.00 36.65 4.85
2008 2054 0.302288 TGCGTAACGTCAACACTTGC 59.698 50.000 0.00 0.00 0.00 4.01
2009 2055 2.411031 GGATGCGTAACGTCAACACTTG 60.411 50.000 0.00 0.00 35.86 3.16
2015 2061 1.338294 ACCATGGATGCGTAACGTCAA 60.338 47.619 21.47 0.00 35.86 3.18
2077 2123 6.599244 CACTTCTCTAATGTTGAGGGCAATTA 59.401 38.462 0.00 0.00 36.22 1.40
2124 2170 0.757188 CTCCGCCACTCACTAGGGAT 60.757 60.000 0.00 0.00 0.00 3.85
2150 2196 1.299976 GGCCCGTCCAGATGTTTCT 59.700 57.895 0.00 0.00 34.01 2.52
2229 2275 3.265791 GCATCTCCTGACTTACACAAGG 58.734 50.000 0.00 0.00 35.97 3.61
2259 2305 0.029300 ACTGCATGACAACAACGTGC 59.971 50.000 0.00 0.00 46.45 5.34
2288 2334 3.131396 GGGAGTACATGGTTTATCAGCG 58.869 50.000 0.00 0.00 0.00 5.18
2309 2355 1.730612 GCGAACTAAAAAGGACCGGAG 59.269 52.381 9.46 0.00 0.00 4.63
2310 2356 1.070445 TGCGAACTAAAAAGGACCGGA 59.930 47.619 9.46 0.00 0.00 5.14
2311 2357 1.515081 TGCGAACTAAAAAGGACCGG 58.485 50.000 0.00 0.00 0.00 5.28
2312 2358 6.257193 ACTTATATGCGAACTAAAAAGGACCG 59.743 38.462 0.00 0.00 0.00 4.79
2313 2359 7.549615 ACTTATATGCGAACTAAAAAGGACC 57.450 36.000 0.00 0.00 0.00 4.46
2314 2360 9.836076 AAAACTTATATGCGAACTAAAAAGGAC 57.164 29.630 0.00 0.00 0.00 3.85
2315 2361 9.834628 CAAAACTTATATGCGAACTAAAAAGGA 57.165 29.630 0.00 0.00 0.00 3.36
2316 2362 9.620660 ACAAAACTTATATGCGAACTAAAAAGG 57.379 29.630 0.00 0.00 0.00 3.11
2318 2364 9.615295 GGACAAAACTTATATGCGAACTAAAAA 57.385 29.630 0.00 0.00 0.00 1.94
2319 2365 8.238631 GGGACAAAACTTATATGCGAACTAAAA 58.761 33.333 0.00 0.00 0.00 1.52
2320 2366 7.390996 TGGGACAAAACTTATATGCGAACTAAA 59.609 33.333 0.00 0.00 31.92 1.85
2321 2367 6.879993 TGGGACAAAACTTATATGCGAACTAA 59.120 34.615 0.00 0.00 31.92 2.24
2322 2368 6.408035 TGGGACAAAACTTATATGCGAACTA 58.592 36.000 0.00 0.00 31.92 2.24
2323 2369 5.250200 TGGGACAAAACTTATATGCGAACT 58.750 37.500 0.00 0.00 31.92 3.01
2324 2370 5.554822 TGGGACAAAACTTATATGCGAAC 57.445 39.130 0.00 0.00 31.92 3.95
2340 2386 7.074653 AGTAGAAATAGTTTGACTTGGGACA 57.925 36.000 0.00 0.00 0.00 4.02
2341 2387 7.981102 AAGTAGAAATAGTTTGACTTGGGAC 57.019 36.000 3.47 0.00 29.19 4.46
2342 2388 8.215050 TCAAAGTAGAAATAGTTTGACTTGGGA 58.785 33.333 12.13 4.04 41.68 4.37
2343 2389 8.391075 TCAAAGTAGAAATAGTTTGACTTGGG 57.609 34.615 12.13 2.32 41.68 4.12
2362 2408 9.588096 ACTCTTTCCTATAAATTTGGTCAAAGT 57.412 29.630 0.00 0.00 33.32 2.66
2365 2411 9.457436 GGTACTCTTTCCTATAAATTTGGTCAA 57.543 33.333 0.00 0.00 0.00 3.18
2366 2412 8.607713 TGGTACTCTTTCCTATAAATTTGGTCA 58.392 33.333 0.00 0.00 0.00 4.02
2367 2413 9.457436 TTGGTACTCTTTCCTATAAATTTGGTC 57.543 33.333 0.00 0.00 0.00 4.02
2368 2414 9.239551 GTTGGTACTCTTTCCTATAAATTTGGT 57.760 33.333 0.00 0.00 0.00 3.67
2369 2415 9.238368 TGTTGGTACTCTTTCCTATAAATTTGG 57.762 33.333 0.00 0.00 0.00 3.28
2379 2425 9.614792 GTATTATGAATGTTGGTACTCTTTCCT 57.385 33.333 0.00 0.00 0.00 3.36
2380 2426 8.837389 GGTATTATGAATGTTGGTACTCTTTCC 58.163 37.037 0.00 0.00 0.00 3.13
2381 2427 9.391006 TGGTATTATGAATGTTGGTACTCTTTC 57.609 33.333 0.00 0.01 0.00 2.62
2382 2428 9.747898 TTGGTATTATGAATGTTGGTACTCTTT 57.252 29.630 0.00 0.00 0.00 2.52
2383 2429 9.747898 TTTGGTATTATGAATGTTGGTACTCTT 57.252 29.630 0.00 0.00 0.00 2.85
2384 2430 9.920946 ATTTGGTATTATGAATGTTGGTACTCT 57.079 29.630 0.00 0.00 0.00 3.24
2386 2432 9.693739 TGATTTGGTATTATGAATGTTGGTACT 57.306 29.630 0.00 0.00 0.00 2.73
2503 2549 5.401550 TCTGTCAAGTCAAACTTTGCAAAG 58.598 37.500 32.53 32.53 36.03 2.77
2504 2550 5.384063 TCTGTCAAGTCAAACTTTGCAAA 57.616 34.783 12.14 12.14 36.03 3.68
2505 2551 5.384063 TTCTGTCAAGTCAAACTTTGCAA 57.616 34.783 0.00 0.00 36.03 4.08
2506 2552 5.384063 TTTCTGTCAAGTCAAACTTTGCA 57.616 34.783 0.00 0.00 36.03 4.08
2507 2553 6.268566 AGATTTCTGTCAAGTCAAACTTTGC 58.731 36.000 0.00 0.00 36.03 3.68
2508 2554 9.956720 ATTAGATTTCTGTCAAGTCAAACTTTG 57.043 29.630 0.00 0.00 36.03 2.77
2512 2558 9.495754 GCATATTAGATTTCTGTCAAGTCAAAC 57.504 33.333 0.00 0.00 0.00 2.93
2513 2559 9.230122 TGCATATTAGATTTCTGTCAAGTCAAA 57.770 29.630 0.00 0.00 0.00 2.69
2514 2560 8.791327 TGCATATTAGATTTCTGTCAAGTCAA 57.209 30.769 0.00 0.00 0.00 3.18
2515 2561 8.260114 TCTGCATATTAGATTTCTGTCAAGTCA 58.740 33.333 0.00 0.00 0.00 3.41
2516 2562 8.654230 TCTGCATATTAGATTTCTGTCAAGTC 57.346 34.615 0.00 0.00 0.00 3.01
2517 2563 8.263640 ACTCTGCATATTAGATTTCTGTCAAGT 58.736 33.333 0.00 0.00 0.00 3.16
2518 2564 8.659925 ACTCTGCATATTAGATTTCTGTCAAG 57.340 34.615 0.00 0.00 0.00 3.02
2527 2573 9.343539 GGTCCTTTTTACTCTGCATATTAGATT 57.656 33.333 0.00 0.00 0.00 2.40
2528 2574 7.657761 CGGTCCTTTTTACTCTGCATATTAGAT 59.342 37.037 0.00 0.00 0.00 1.98
2529 2575 6.984474 CGGTCCTTTTTACTCTGCATATTAGA 59.016 38.462 0.00 0.00 0.00 2.10
2530 2576 6.202954 CCGGTCCTTTTTACTCTGCATATTAG 59.797 42.308 0.00 0.00 0.00 1.73
2531 2577 6.053005 CCGGTCCTTTTTACTCTGCATATTA 58.947 40.000 0.00 0.00 0.00 0.98
2532 2578 4.881850 CCGGTCCTTTTTACTCTGCATATT 59.118 41.667 0.00 0.00 0.00 1.28
2533 2579 4.163458 TCCGGTCCTTTTTACTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
2534 2580 3.516300 TCCGGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
2535 2581 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
2536 2582 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
2537 2583 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
2538 2584 2.354805 CCCTCCGGTCCTTTTTACTCTG 60.355 54.545 0.00 0.00 0.00 3.35
2539 2585 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
2540 2586 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
2541 2587 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
2542 2588 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
2543 2589 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
2544 2590 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
2545 2591 1.273759 GTACTCCCTCCGGTCCTTTT 58.726 55.000 0.00 0.00 0.00 2.27
2546 2592 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.000 0.00 0.00 0.00 3.11
2547 2593 0.324460 CTGTACTCCCTCCGGTCCTT 60.324 60.000 0.00 0.00 0.00 3.36
2548 2594 1.306970 CTGTACTCCCTCCGGTCCT 59.693 63.158 0.00 0.00 0.00 3.85
2549 2595 1.000107 ACTGTACTCCCTCCGGTCC 60.000 63.158 0.00 0.00 0.00 4.46
2550 2596 0.034283 AGACTGTACTCCCTCCGGTC 60.034 60.000 0.00 0.00 35.23 4.79
2551 2597 0.408700 AAGACTGTACTCCCTCCGGT 59.591 55.000 0.00 0.00 0.00 5.28
2552 2598 1.204941 CAAAGACTGTACTCCCTCCGG 59.795 57.143 0.00 0.00 0.00 5.14
2553 2599 1.404315 GCAAAGACTGTACTCCCTCCG 60.404 57.143 0.00 0.00 0.00 4.63
2554 2600 1.903183 AGCAAAGACTGTACTCCCTCC 59.097 52.381 0.00 0.00 0.00 4.30
2555 2601 4.803098 TTAGCAAAGACTGTACTCCCTC 57.197 45.455 0.00 0.00 0.00 4.30
2556 2602 4.347000 TGTTTAGCAAAGACTGTACTCCCT 59.653 41.667 0.00 0.00 0.00 4.20
2557 2603 4.638304 TGTTTAGCAAAGACTGTACTCCC 58.362 43.478 0.00 0.00 0.00 4.30
2558 2604 6.613755 TTTGTTTAGCAAAGACTGTACTCC 57.386 37.500 0.00 0.00 41.68 3.85
2598 2644 3.001634 CACGCATGAATGTATGTCAGGAC 59.998 47.826 0.00 0.00 0.00 3.85
2599 2645 3.197265 CACGCATGAATGTATGTCAGGA 58.803 45.455 0.00 0.00 0.00 3.86
2771 2817 3.430453 CCCAAAAGCCTTCTGGTATTCA 58.570 45.455 0.00 0.00 35.27 2.57
2890 2936 4.037803 AGCAATGAACACACAAGCATACAA 59.962 37.500 0.00 0.00 0.00 2.41
2989 3057 0.178903 TGTAGTTGCACCCTCCCTCT 60.179 55.000 0.00 0.00 0.00 3.69
3251 3340 7.341769 TCCAAACATAGAACCCATTCCTAAATG 59.658 37.037 0.00 0.00 41.69 2.32
3348 3437 6.068010 TGAGAACAAGTTTGTCATGGGTTAT 58.932 36.000 0.00 0.00 41.31 1.89
3492 3587 6.458232 AAATCTGTAGATCTCTAAGCACGT 57.542 37.500 0.00 0.00 32.75 4.49
3494 3589 7.717568 TGGTAAATCTGTAGATCTCTAAGCAC 58.282 38.462 0.00 0.00 32.75 4.40
3500 3595 9.875708 AGTAAGATGGTAAATCTGTAGATCTCT 57.124 33.333 0.00 0.00 32.75 3.10
3503 3598 8.983724 GCAAGTAAGATGGTAAATCTGTAGATC 58.016 37.037 0.00 0.00 32.75 2.75
3519 3614 6.441093 CATTGTGTATGGTGCAAGTAAGAT 57.559 37.500 0.00 0.00 0.00 2.40
3520 3615 5.878332 CATTGTGTATGGTGCAAGTAAGA 57.122 39.130 0.00 0.00 0.00 2.10
3561 3656 5.102953 TGGTGAAGATCATCTTTACAGGG 57.897 43.478 20.66 0.00 42.62 4.45
3809 3907 6.922957 GCAATTTTTCACCATGTCTTGAGTAA 59.077 34.615 0.00 0.00 0.00 2.24
3814 3912 5.634859 GGTAGCAATTTTTCACCATGTCTTG 59.365 40.000 0.00 0.00 0.00 3.02
3837 3936 7.770897 AGCTTGGAGATAAATAACAGTAACTGG 59.229 37.037 0.00 0.00 35.51 4.00
3838 3937 8.723942 AGCTTGGAGATAAATAACAGTAACTG 57.276 34.615 0.00 0.00 37.52 3.16
3839 3938 9.819267 GTAGCTTGGAGATAAATAACAGTAACT 57.181 33.333 0.00 0.00 0.00 2.24
3868 3967 2.657297 GGCTGAAAGACAATGCCCA 58.343 52.632 0.00 0.00 46.27 5.36
3903 4012 0.839946 AATCTAATGGAGGCGCCTGT 59.160 50.000 38.41 17.36 37.63 4.00
3943 6289 1.274703 ATGGGCAGTGATCCCTTCGT 61.275 55.000 7.29 0.00 44.23 3.85
3944 6290 0.816825 CATGGGCAGTGATCCCTTCG 60.817 60.000 7.29 0.00 44.23 3.79
3948 6294 1.067295 TATCCATGGGCAGTGATCCC 58.933 55.000 13.02 0.00 44.17 3.85
3978 6339 9.761504 ATATTAGCATCACATATAGCAGATGAC 57.238 33.333 12.61 6.43 40.10 3.06
4061 6425 3.754323 TCGGGCATTGTCGTAAAGAAATT 59.246 39.130 0.00 0.00 0.00 1.82
4082 6446 2.746362 AGTGCAGCATTAGAGCAGTTTC 59.254 45.455 0.00 0.00 38.70 2.78
4085 6449 2.082231 CAAGTGCAGCATTAGAGCAGT 58.918 47.619 0.00 0.00 43.28 4.40
4192 7011 1.256812 GCCTTAAGAGCCCTTTGCAA 58.743 50.000 3.36 0.00 44.83 4.08
4193 7012 0.112218 TGCCTTAAGAGCCCTTTGCA 59.888 50.000 3.36 0.00 44.83 4.08
4194 7013 0.528017 GTGCCTTAAGAGCCCTTTGC 59.472 55.000 3.36 0.00 41.71 3.68
4195 7014 2.206576 AGTGCCTTAAGAGCCCTTTG 57.793 50.000 3.36 0.00 33.94 2.77
4262 7085 5.968848 GCACGTCTGTTTTATGACTGAAAAA 59.031 36.000 0.00 0.00 30.75 1.94
4282 7105 0.238289 CAGCAAGTTACAAGGGCACG 59.762 55.000 0.00 0.00 0.00 5.34
4283 7106 1.604604 TCAGCAAGTTACAAGGGCAC 58.395 50.000 0.00 0.00 0.00 5.01
4284 7107 2.356665 TTCAGCAAGTTACAAGGGCA 57.643 45.000 0.00 0.00 0.00 5.36
4285 7108 3.726291 TTTTCAGCAAGTTACAAGGGC 57.274 42.857 0.00 0.00 0.00 5.19
4286 7109 5.222631 GTGATTTTCAGCAAGTTACAAGGG 58.777 41.667 0.00 0.00 0.00 3.95
4287 7110 4.911610 CGTGATTTTCAGCAAGTTACAAGG 59.088 41.667 0.00 0.00 0.00 3.61
4298 7121 7.006210 CGTAACACTAAAATCGTGATTTTCAGC 59.994 37.037 20.46 7.70 44.98 4.26
4309 7132 7.680982 TGAAATGATCCGTAACACTAAAATCG 58.319 34.615 0.00 0.00 0.00 3.34
4323 7146 4.990257 AGACAAAGCATTGAAATGATCCG 58.010 39.130 8.96 0.00 38.94 4.18
4350 7175 9.612620 CAGGAAAACAAACATAGTGATAACTTC 57.387 33.333 0.00 0.00 0.00 3.01
4351 7176 9.349713 TCAGGAAAACAAACATAGTGATAACTT 57.650 29.630 0.00 0.00 0.00 2.66
4364 7189 8.027189 GGGTAAACATCTATCAGGAAAACAAAC 58.973 37.037 0.00 0.00 0.00 2.93
4368 7193 6.884836 ACAGGGTAAACATCTATCAGGAAAAC 59.115 38.462 0.00 0.00 0.00 2.43
4393 7218 5.620206 TGCTTGTAGAACATCTGAAAAGGA 58.380 37.500 0.00 0.00 0.00 3.36
4456 7281 4.841422 AGATTGGAGGATCACAGTTCAAG 58.159 43.478 0.00 0.00 36.25 3.02
4512 7337 4.574674 TGAGGGTATCAGCATCTTTGTT 57.425 40.909 0.00 0.00 32.77 2.83
4530 7355 4.679373 AGGTACAAGGAGCATGTATGAG 57.321 45.455 0.00 0.00 35.84 2.90
4566 7391 8.606830 AGGAGTAAAAAGTGTCCTGAGAATTAT 58.393 33.333 0.00 0.00 38.05 1.28
4615 7440 4.914312 ACGGTACAACACAACGATATTG 57.086 40.909 0.00 0.00 0.00 1.90
4698 7531 5.371115 TGTTAGTTGCTATTCAAAGGCAC 57.629 39.130 0.00 0.00 36.26 5.01
4699 7532 5.709631 TGATGTTAGTTGCTATTCAAAGGCA 59.290 36.000 0.00 0.00 36.26 4.75
4705 7538 6.090763 CGACAAGTGATGTTAGTTGCTATTCA 59.909 38.462 0.00 0.00 44.12 2.57
4724 7557 4.425520 GAGAAACCATCTAGTCCGACAAG 58.574 47.826 0.40 0.00 38.96 3.16
4725 7558 3.194968 GGAGAAACCATCTAGTCCGACAA 59.805 47.826 0.40 0.00 38.96 3.18
4726 7559 2.758979 GGAGAAACCATCTAGTCCGACA 59.241 50.000 0.40 0.00 38.96 4.35
4727 7560 2.101082 GGGAGAAACCATCTAGTCCGAC 59.899 54.545 0.00 0.00 38.96 4.79
4728 7561 2.024273 AGGGAGAAACCATCTAGTCCGA 60.024 50.000 0.00 0.00 38.96 4.55
4729 7562 2.101582 CAGGGAGAAACCATCTAGTCCG 59.898 54.545 0.00 0.00 38.96 4.79
4730 7563 2.158885 GCAGGGAGAAACCATCTAGTCC 60.159 54.545 0.00 0.00 38.96 3.85
4731 7564 2.482142 CGCAGGGAGAAACCATCTAGTC 60.482 54.545 0.00 0.00 38.96 2.59
4732 7565 1.482593 CGCAGGGAGAAACCATCTAGT 59.517 52.381 0.00 0.00 38.96 2.57
4733 7566 1.808133 GCGCAGGGAGAAACCATCTAG 60.808 57.143 0.30 0.00 38.96 2.43
4734 7567 0.178068 GCGCAGGGAGAAACCATCTA 59.822 55.000 0.30 0.00 38.96 1.98
4735 7568 1.078143 GCGCAGGGAGAAACCATCT 60.078 57.895 0.30 0.00 42.61 2.90
4736 7569 0.178068 TAGCGCAGGGAGAAACCATC 59.822 55.000 11.47 0.00 41.20 3.51
4737 7570 0.839946 ATAGCGCAGGGAGAAACCAT 59.160 50.000 11.47 0.00 41.20 3.55
4738 7571 1.138266 GTATAGCGCAGGGAGAAACCA 59.862 52.381 11.47 0.00 41.20 3.67
4739 7572 1.413077 AGTATAGCGCAGGGAGAAACC 59.587 52.381 11.47 0.00 38.08 3.27
4740 7573 2.546162 GGAGTATAGCGCAGGGAGAAAC 60.546 54.545 11.47 0.00 0.00 2.78
4741 7574 1.687123 GGAGTATAGCGCAGGGAGAAA 59.313 52.381 11.47 0.00 0.00 2.52
4742 7575 1.133450 AGGAGTATAGCGCAGGGAGAA 60.133 52.381 11.47 0.00 0.00 2.87
4743 7576 0.478942 AGGAGTATAGCGCAGGGAGA 59.521 55.000 11.47 0.00 0.00 3.71
4744 7577 1.333177 AAGGAGTATAGCGCAGGGAG 58.667 55.000 11.47 0.00 0.00 4.30
4745 7578 2.515854 CTAAGGAGTATAGCGCAGGGA 58.484 52.381 11.47 0.00 0.00 4.20
4746 7579 1.067495 GCTAAGGAGTATAGCGCAGGG 60.067 57.143 11.47 0.00 36.72 4.45
4747 7580 1.613925 TGCTAAGGAGTATAGCGCAGG 59.386 52.381 11.47 0.00 46.93 4.85
4748 7581 3.371102 TTGCTAAGGAGTATAGCGCAG 57.629 47.619 11.47 0.00 46.93 5.18
4749 7582 3.554960 CCATTGCTAAGGAGTATAGCGCA 60.555 47.826 11.47 0.00 46.93 6.09
4750 7583 2.996621 CCATTGCTAAGGAGTATAGCGC 59.003 50.000 0.00 0.00 46.93 5.92
4751 7584 2.996621 GCCATTGCTAAGGAGTATAGCG 59.003 50.000 0.00 0.00 46.93 4.26
4752 7585 3.244561 TGGCCATTGCTAAGGAGTATAGC 60.245 47.826 0.00 0.00 44.77 2.97
4753 7586 4.623932 TGGCCATTGCTAAGGAGTATAG 57.376 45.455 0.00 0.00 37.74 1.31
4754 7587 4.165180 TGTTGGCCATTGCTAAGGAGTATA 59.835 41.667 6.09 0.00 38.76 1.47
4755 7588 3.053693 TGTTGGCCATTGCTAAGGAGTAT 60.054 43.478 6.09 0.00 38.76 2.12
4756 7589 2.307392 TGTTGGCCATTGCTAAGGAGTA 59.693 45.455 6.09 0.00 38.76 2.59
4757 7590 1.075374 TGTTGGCCATTGCTAAGGAGT 59.925 47.619 6.09 0.00 38.76 3.85
4758 7591 1.838112 TGTTGGCCATTGCTAAGGAG 58.162 50.000 6.09 0.00 38.76 3.69
4759 7592 2.291475 TGATGTTGGCCATTGCTAAGGA 60.291 45.455 6.09 0.00 38.76 3.36
4760 7593 2.101783 TGATGTTGGCCATTGCTAAGG 58.898 47.619 6.09 0.00 38.76 2.69
4781 7614 7.692460 TCAACAATCTATTGCAGAAGACAAT 57.308 32.000 2.60 0.00 41.38 2.71
4783 7616 8.969260 ATATCAACAATCTATTGCAGAAGACA 57.031 30.769 2.60 0.00 41.38 3.41
4784 7617 9.270640 AGATATCAACAATCTATTGCAGAAGAC 57.729 33.333 5.32 0.00 41.38 3.01
4785 7618 9.486497 GAGATATCAACAATCTATTGCAGAAGA 57.514 33.333 5.32 2.90 41.38 2.87
4786 7619 9.269453 TGAGATATCAACAATCTATTGCAGAAG 57.731 33.333 5.32 0.00 41.38 2.85
4788 7621 8.427276 ACTGAGATATCAACAATCTATTGCAGA 58.573 33.333 5.32 2.06 41.38 4.26
4790 7623 8.969260 AACTGAGATATCAACAATCTATTGCA 57.031 30.769 5.32 0.00 41.38 4.08
4791 7624 9.270640 AGAACTGAGATATCAACAATCTATTGC 57.729 33.333 5.32 0.00 41.38 3.56
4803 7636 9.634021 ACATACTACTTGAGAACTGAGATATCA 57.366 33.333 5.32 0.00 0.00 2.15
4807 7642 7.397476 TCCAACATACTACTTGAGAACTGAGAT 59.603 37.037 0.00 0.00 0.00 2.75
4821 7656 2.667473 ACGGTGCTCCAACATACTAC 57.333 50.000 5.52 0.00 0.00 2.73
4822 7657 2.967362 CAACGGTGCTCCAACATACTA 58.033 47.619 5.52 0.00 0.00 1.82
4823 7658 1.808411 CAACGGTGCTCCAACATACT 58.192 50.000 5.52 0.00 0.00 2.12
4857 7692 2.884639 GCAACCAGTGTTCCAACATACT 59.115 45.455 0.00 0.00 41.59 2.12
4896 7736 7.688372 AGCATAGTACAAACAATCTTCAATCG 58.312 34.615 0.00 0.00 0.00 3.34
4905 7752 7.944729 ATCAAGGAAGCATAGTACAAACAAT 57.055 32.000 0.00 0.00 0.00 2.71
4982 7829 2.045561 TGTTGACCATTTGACACGGT 57.954 45.000 0.00 0.00 35.12 4.83
5007 7854 0.439600 GCATTTGCATTTGACACGGC 59.560 50.000 0.00 0.00 41.59 5.68
5045 7892 9.497030 TGCTTACATACAATAATAAAAGTTGCG 57.503 29.630 0.00 0.00 0.00 4.85
5068 7923 2.745281 ACGTGCCATTTATAACGTTGCT 59.255 40.909 11.99 0.32 46.27 3.91
5069 7924 3.125698 ACGTGCCATTTATAACGTTGC 57.874 42.857 11.99 4.18 46.27 4.17
5073 7928 5.388061 CGGAGATAACGTGCCATTTATAACG 60.388 44.000 0.00 0.00 41.64 3.18
5074 7929 5.464389 ACGGAGATAACGTGCCATTTATAAC 59.536 40.000 0.00 0.00 43.78 1.89
5075 7930 5.603596 ACGGAGATAACGTGCCATTTATAA 58.396 37.500 0.00 0.00 43.78 0.98
5076 7931 5.204409 ACGGAGATAACGTGCCATTTATA 57.796 39.130 0.00 0.00 43.78 0.98
5077 7932 4.067972 ACGGAGATAACGTGCCATTTAT 57.932 40.909 0.00 0.00 43.78 1.40
5078 7933 3.530265 ACGGAGATAACGTGCCATTTA 57.470 42.857 0.00 0.00 43.78 1.40
5079 7934 2.396590 ACGGAGATAACGTGCCATTT 57.603 45.000 0.00 0.00 43.78 2.32
5080 7935 2.006888 CAACGGAGATAACGTGCCATT 58.993 47.619 0.00 0.00 44.83 3.16
5081 7936 1.206132 TCAACGGAGATAACGTGCCAT 59.794 47.619 0.00 0.00 44.83 4.40
5082 7937 0.604073 TCAACGGAGATAACGTGCCA 59.396 50.000 0.00 0.00 44.83 4.92
5096 7951 4.316446 CGCTGTCGATAACTTATGTCAACG 60.316 45.833 0.00 0.00 38.10 4.10
5118 7982 1.389106 GCCACTAGCGTAAACTTGACG 59.611 52.381 0.00 0.00 43.19 4.35
5140 8004 1.070758 GGTCCAGTCAAGACTTGCAGA 59.929 52.381 10.50 4.75 40.20 4.26
5143 8007 1.230324 GTGGTCCAGTCAAGACTTGC 58.770 55.000 10.50 5.98 40.20 4.01
5221 8085 2.982130 CCTCAACGCTAGCCTGGT 59.018 61.111 9.66 0.00 0.00 4.00
5266 8131 4.675038 GTGGTATATACTCCTACCAGGCT 58.325 47.826 12.54 0.00 46.05 4.58
5307 8172 4.847990 AACGTGAAATATCCTGGGGTAA 57.152 40.909 0.00 0.00 0.00 2.85
5311 8176 5.637006 TGAAAAACGTGAAATATCCTGGG 57.363 39.130 0.00 0.00 0.00 4.45
5322 8187 6.088350 GCGCCTTTTTATATTGAAAAACGTGA 59.912 34.615 0.00 0.00 34.23 4.35
5323 8188 6.088883 AGCGCCTTTTTATATTGAAAAACGTG 59.911 34.615 2.29 9.22 34.23 4.49
5324 8189 6.153756 AGCGCCTTTTTATATTGAAAAACGT 58.846 32.000 2.29 0.00 34.23 3.99
5325 8190 6.626199 AGCGCCTTTTTATATTGAAAAACG 57.374 33.333 2.29 11.01 34.23 3.60
5326 8191 7.482428 TCGTAGCGCCTTTTTATATTGAAAAAC 59.518 33.333 2.29 0.00 34.23 2.43
5345 8213 3.532892 AGTACGTGGAATATCGTAGCG 57.467 47.619 0.00 0.00 41.90 4.26
5362 8230 1.509463 CTGCCCTTCACGCGTAGTA 59.491 57.895 13.44 0.00 0.00 1.82
5363 8231 2.261671 CTGCCCTTCACGCGTAGT 59.738 61.111 13.44 0.00 0.00 2.73
5364 8232 2.509336 CCTGCCCTTCACGCGTAG 60.509 66.667 13.44 6.77 0.00 3.51
5376 8244 1.217244 CTTTGCTTGATGGCCTGCC 59.783 57.895 3.32 0.00 0.00 4.85
5411 8279 3.505680 TGGAAGCTGTTATTGCGTTCAAT 59.494 39.130 0.00 0.00 44.52 2.57
5412 8280 2.881513 TGGAAGCTGTTATTGCGTTCAA 59.118 40.909 0.00 0.00 36.51 2.69
5417 8285 2.584791 GTGTTGGAAGCTGTTATTGCG 58.415 47.619 0.00 0.00 35.28 4.85
5431 8299 1.069596 GCAAAGCTTGGGGTGTTGG 59.930 57.895 0.00 0.00 0.00 3.77



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.