Multiple sequence alignment - TraesCS3A01G376700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G376700 chr3A 100.000 2678 0 0 1 2678 625404476 625407153 0.000000e+00 4946.0
1 TraesCS3A01G376700 chr3A 98.837 258 3 0 3 260 625398288 625398545 6.760000e-126 460.0
2 TraesCS3A01G376700 chr3A 96.429 252 7 2 340 590 500983524 500983274 5.330000e-112 414.0
3 TraesCS3A01G376700 chr3A 96.680 241 7 1 348 587 246041757 246041517 1.490000e-107 399.0
4 TraesCS3A01G376700 chr3A 94.186 258 9 4 345 597 87379748 87379492 3.230000e-104 388.0
5 TraesCS3A01G376700 chr3A 91.386 267 18 5 324 587 66409253 66409517 7.050000e-96 361.0
6 TraesCS3A01G376700 chr3A 91.373 255 20 2 334 587 667194749 667194496 5.490000e-92 348.0
7 TraesCS3A01G376700 chr3A 94.949 99 5 0 586 684 733919665 733919763 3.570000e-34 156.0
8 TraesCS3A01G376700 chr3A 90.517 116 8 3 586 699 648022101 648022215 1.660000e-32 150.0
9 TraesCS3A01G376700 chr3A 95.745 94 3 1 259 351 733919575 733919668 1.660000e-32 150.0
10 TraesCS3A01G376700 chr3A 92.157 102 7 1 259 359 564428772 564428671 2.780000e-30 143.0
11 TraesCS3A01G376700 chr3D 94.185 1221 42 14 679 1876 482501016 482502230 0.000000e+00 1834.0
12 TraesCS3A01G376700 chr3D 82.514 183 29 3 1132 1314 582056734 582056555 9.920000e-35 158.0
13 TraesCS3A01G376700 chr3D 94.898 98 5 0 586 683 102229996 102230093 1.280000e-33 154.0
14 TraesCS3A01G376700 chr3D 94.898 98 5 0 584 681 340147465 340147368 1.280000e-33 154.0
15 TraesCS3A01G376700 chr3D 79.558 181 23 8 1153 1327 582828567 582828395 1.680000e-22 117.0
16 TraesCS3A01G376700 chr3D 96.970 33 1 0 1882 1914 482502602 482502634 3.720000e-04 56.5
17 TraesCS3A01G376700 chr3B 95.318 598 25 1 1171 1768 644839783 644840377 0.000000e+00 946.0
18 TraesCS3A01G376700 chr3B 82.797 901 101 32 1794 2678 644842085 644842947 0.000000e+00 756.0
19 TraesCS3A01G376700 chr3B 89.495 495 26 15 688 1179 644839119 644839590 1.060000e-168 603.0
20 TraesCS3A01G376700 chr3B 95.984 249 8 2 345 591 8013435 8013683 1.150000e-108 403.0
21 TraesCS3A01G376700 chr3B 94.779 249 11 2 342 588 497096327 497096575 1.160000e-103 387.0
22 TraesCS3A01G376700 chr3B 100.000 38 0 0 1768 1805 644842032 644842069 1.330000e-08 71.3
23 TraesCS3A01G376700 chr5B 81.955 665 109 11 1018 1678 602138095 602138752 1.080000e-153 553.0
24 TraesCS3A01G376700 chr5B 94.681 94 4 1 259 351 711285334 711285427 7.730000e-31 145.0
25 TraesCS3A01G376700 chr5D 80.602 665 118 11 1018 1678 488837820 488838477 1.110000e-138 503.0
26 TraesCS3A01G376700 chr5D 80.247 648 115 12 1018 1660 488783711 488784350 2.410000e-130 475.0
27 TraesCS3A01G376700 chr5D 90.566 265 21 4 334 597 65758583 65758322 5.490000e-92 348.0
28 TraesCS3A01G376700 chr5A 80.180 666 119 13 1018 1678 609812999 609813656 1.110000e-133 486.0
29 TraesCS3A01G376700 chr5A 97.692 260 5 1 2 260 381737760 381738019 1.890000e-121 446.0
30 TraesCS3A01G376700 chr5A 97.683 259 4 1 2 260 488068249 488068505 6.800000e-121 444.0
31 TraesCS3A01G376700 chr5A 94.510 255 11 3 339 592 677940385 677940637 8.990000e-105 390.0
32 TraesCS3A01G376700 chr5A 95.833 96 4 0 586 681 118463766 118463671 3.570000e-34 156.0
33 TraesCS3A01G376700 chr7A 98.069 259 4 1 2 260 3640357 3640614 1.460000e-122 449.0
34 TraesCS3A01G376700 chr7A 94.163 257 11 4 337 591 722869189 722869443 3.230000e-104 388.0
35 TraesCS3A01G376700 chr7A 96.809 94 2 1 259 351 722557692 722557599 3.570000e-34 156.0
36 TraesCS3A01G376700 chr7A 94.737 95 4 1 258 351 653547204 653547110 2.150000e-31 147.0
37 TraesCS3A01G376700 chr6A 97.683 259 4 1 2 260 397237999 397237743 6.800000e-121 444.0
38 TraesCS3A01G376700 chr6A 97.683 259 5 1 2 260 599792788 599792531 6.800000e-121 444.0
39 TraesCS3A01G376700 chr6A 96.809 94 2 1 259 351 584924413 584924320 3.570000e-34 156.0
40 TraesCS3A01G376700 chr2A 97.683 259 5 1 2 260 749539151 749538894 6.800000e-121 444.0
41 TraesCS3A01G376700 chr2A 97.308 260 5 1 1 260 549690037 549690294 8.800000e-120 440.0
42 TraesCS3A01G376700 chr2A 90.114 263 21 5 333 590 15899596 15899334 1.190000e-88 337.0
43 TraesCS3A01G376700 chr2A 95.833 96 4 0 586 681 159002665 159002760 3.570000e-34 156.0
44 TraesCS3A01G376700 chr1A 97.683 259 4 1 2 260 72876443 72876699 6.800000e-121 444.0
45 TraesCS3A01G376700 chr1A 93.774 257 14 2 332 587 536345198 536345453 4.180000e-103 385.0
46 TraesCS3A01G376700 chr1A 96.739 92 3 0 260 351 480826445 480826536 1.280000e-33 154.0
47 TraesCS3A01G376700 chr4A 95.161 248 10 1 348 593 109428086 109427839 8.990000e-105 390.0
48 TraesCS3A01G376700 chr4A 92.913 254 16 2 335 586 21108908 21108655 4.210000e-98 368.0
49 TraesCS3A01G376700 chr4A 95.745 94 3 1 259 351 646108608 646108701 1.660000e-32 150.0
50 TraesCS3A01G376700 chr4D 90.189 265 23 3 325 587 124891267 124891530 2.550000e-90 342.0
51 TraesCS3A01G376700 chr4D 89.655 261 25 2 323 582 149890047 149889788 5.530000e-87 331.0
52 TraesCS3A01G376700 chr4D 81.818 198 32 3 1132 1327 465358012 465358207 2.130000e-36 163.0
53 TraesCS3A01G376700 chr6D 90.272 257 22 2 333 587 420353623 420353368 1.540000e-87 333.0
54 TraesCS3A01G376700 chr2D 77.485 342 66 9 345 681 298940022 298940357 7.560000e-46 195.0
55 TraesCS3A01G376700 chr4B 95.876 97 4 0 586 682 623406080 623406176 9.920000e-35 158.0
56 TraesCS3A01G376700 chr7D 88.372 129 12 2 586 711 12907296 12907168 4.620000e-33 152.0
57 TraesCS3A01G376700 chr7D 90.000 110 7 2 259 367 575730475 575730581 3.590000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G376700 chr3A 625404476 625407153 2677 False 4946.000 4946 100.0000 1 2678 1 chr3A.!!$F3 2677
1 TraesCS3A01G376700 chr3D 482501016 482502634 1618 False 945.250 1834 95.5775 679 1914 2 chr3D.!!$F2 1235
2 TraesCS3A01G376700 chr3B 644839119 644842947 3828 False 594.075 946 91.9025 688 2678 4 chr3B.!!$F3 1990
3 TraesCS3A01G376700 chr5B 602138095 602138752 657 False 553.000 553 81.9550 1018 1678 1 chr5B.!!$F1 660
4 TraesCS3A01G376700 chr5D 488837820 488838477 657 False 503.000 503 80.6020 1018 1678 1 chr5D.!!$F2 660
5 TraesCS3A01G376700 chr5D 488783711 488784350 639 False 475.000 475 80.2470 1018 1660 1 chr5D.!!$F1 642
6 TraesCS3A01G376700 chr5A 609812999 609813656 657 False 486.000 486 80.1800 1018 1678 1 chr5A.!!$F3 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 184 0.037232 GTAGTGCTCCCGCTCACTTT 60.037 55.0 0.01 0.00 42.81 2.66 F
1015 1033 0.033504 GATAATGGCCGGCGAGAAGA 59.966 55.0 22.54 3.31 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1465 1684 2.126580 GACGTCCACGAACCCGAG 60.127 66.667 3.51 0.00 43.02 4.63 R
1956 4237 3.589881 GAGGATGTGGCGCATGGC 61.590 66.667 19.78 4.63 38.06 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.670521 TCTATTTCTATAGATCTTGATGCCCA 57.329 34.615 0.00 0.00 38.23 5.36
34 35 9.104713 TCTATTTCTATAGATCTTGATGCCCAA 57.895 33.333 0.00 0.00 38.23 4.12
35 36 9.902684 CTATTTCTATAGATCTTGATGCCCAAT 57.097 33.333 0.00 0.00 36.62 3.16
38 39 9.676861 TTTCTATAGATCTTGATGCCCAATATG 57.323 33.333 0.00 0.00 33.68 1.78
39 40 8.384693 TCTATAGATCTTGATGCCCAATATGT 57.615 34.615 0.00 0.00 33.68 2.29
40 41 9.492730 TCTATAGATCTTGATGCCCAATATGTA 57.507 33.333 0.00 0.00 33.68 2.29
43 44 5.709164 AGATCTTGATGCCCAATATGTAAGC 59.291 40.000 0.00 0.00 33.68 3.09
44 45 4.790937 TCTTGATGCCCAATATGTAAGCA 58.209 39.130 0.00 0.00 37.94 3.91
45 46 4.823442 TCTTGATGCCCAATATGTAAGCAG 59.177 41.667 0.00 0.00 36.80 4.24
46 47 2.886523 TGATGCCCAATATGTAAGCAGC 59.113 45.455 0.00 0.00 40.14 5.25
47 48 2.734755 TGCCCAATATGTAAGCAGCT 57.265 45.000 0.00 0.00 0.00 4.24
48 49 3.017048 TGCCCAATATGTAAGCAGCTT 57.983 42.857 13.46 13.46 0.00 3.74
49 50 3.364549 TGCCCAATATGTAAGCAGCTTT 58.635 40.909 14.29 0.00 0.00 3.51
50 51 4.531854 TGCCCAATATGTAAGCAGCTTTA 58.468 39.130 14.29 3.46 0.00 1.85
51 52 5.139727 TGCCCAATATGTAAGCAGCTTTAT 58.860 37.500 14.29 10.98 0.00 1.40
52 53 5.241506 TGCCCAATATGTAAGCAGCTTTATC 59.758 40.000 14.29 5.42 0.00 1.75
53 54 5.474876 GCCCAATATGTAAGCAGCTTTATCT 59.525 40.000 14.29 0.00 0.00 1.98
54 55 6.655003 GCCCAATATGTAAGCAGCTTTATCTA 59.345 38.462 14.29 1.18 0.00 1.98
55 56 7.148340 GCCCAATATGTAAGCAGCTTTATCTAG 60.148 40.741 14.29 0.00 0.00 2.43
56 57 7.335422 CCCAATATGTAAGCAGCTTTATCTAGG 59.665 40.741 14.29 7.90 0.00 3.02
57 58 7.880195 CCAATATGTAAGCAGCTTTATCTAGGT 59.120 37.037 14.29 0.00 0.00 3.08
58 59 8.930760 CAATATGTAAGCAGCTTTATCTAGGTC 58.069 37.037 14.29 0.00 0.00 3.85
59 60 6.739331 ATGTAAGCAGCTTTATCTAGGTCT 57.261 37.500 14.29 0.00 0.00 3.85
60 61 6.546428 TGTAAGCAGCTTTATCTAGGTCTT 57.454 37.500 14.29 0.00 0.00 3.01
61 62 6.574350 TGTAAGCAGCTTTATCTAGGTCTTC 58.426 40.000 14.29 0.00 0.00 2.87
62 63 4.681074 AGCAGCTTTATCTAGGTCTTCC 57.319 45.455 0.00 0.00 0.00 3.46
64 65 4.719273 AGCAGCTTTATCTAGGTCTTCCTT 59.281 41.667 0.00 0.00 42.12 3.36
65 66 5.190726 AGCAGCTTTATCTAGGTCTTCCTTT 59.809 40.000 0.00 0.00 42.12 3.11
66 67 5.295540 GCAGCTTTATCTAGGTCTTCCTTTG 59.704 44.000 0.00 0.00 42.12 2.77
67 68 6.644347 CAGCTTTATCTAGGTCTTCCTTTGA 58.356 40.000 0.00 0.00 42.12 2.69
68 69 7.106239 CAGCTTTATCTAGGTCTTCCTTTGAA 58.894 38.462 0.00 0.00 42.12 2.69
69 70 7.607991 CAGCTTTATCTAGGTCTTCCTTTGAAA 59.392 37.037 0.00 0.00 42.12 2.69
70 71 8.164070 AGCTTTATCTAGGTCTTCCTTTGAAAA 58.836 33.333 0.00 0.00 42.12 2.29
71 72 8.793592 GCTTTATCTAGGTCTTCCTTTGAAAAA 58.206 33.333 0.00 0.00 42.12 1.94
97 98 8.986477 AATACTCTTCAAACAACCATTTATGC 57.014 30.769 0.00 0.00 0.00 3.14
98 99 6.655078 ACTCTTCAAACAACCATTTATGCT 57.345 33.333 0.00 0.00 0.00 3.79
99 100 7.054491 ACTCTTCAAACAACCATTTATGCTT 57.946 32.000 0.00 0.00 0.00 3.91
100 101 7.500141 ACTCTTCAAACAACCATTTATGCTTT 58.500 30.769 0.00 0.00 0.00 3.51
101 102 7.653311 ACTCTTCAAACAACCATTTATGCTTTC 59.347 33.333 0.00 0.00 0.00 2.62
102 103 6.928492 TCTTCAAACAACCATTTATGCTTTCC 59.072 34.615 0.00 0.00 0.00 3.13
103 104 6.166984 TCAAACAACCATTTATGCTTTCCA 57.833 33.333 0.00 0.00 0.00 3.53
104 105 6.222389 TCAAACAACCATTTATGCTTTCCAG 58.778 36.000 0.00 0.00 0.00 3.86
105 106 6.041409 TCAAACAACCATTTATGCTTTCCAGA 59.959 34.615 0.00 0.00 0.00 3.86
106 107 6.418057 AACAACCATTTATGCTTTCCAGAA 57.582 33.333 0.00 0.00 0.00 3.02
107 108 6.418057 ACAACCATTTATGCTTTCCAGAAA 57.582 33.333 0.00 0.00 38.82 2.52
108 109 7.008021 ACAACCATTTATGCTTTCCAGAAAT 57.992 32.000 0.00 0.00 43.96 2.17
109 110 7.452562 ACAACCATTTATGCTTTCCAGAAATT 58.547 30.769 0.00 0.00 41.27 1.82
110 111 7.603784 ACAACCATTTATGCTTTCCAGAAATTC 59.396 33.333 0.00 0.00 41.27 2.17
111 112 7.486407 ACCATTTATGCTTTCCAGAAATTCT 57.514 32.000 0.00 0.00 41.27 2.40
112 113 8.593945 ACCATTTATGCTTTCCAGAAATTCTA 57.406 30.769 0.00 0.00 41.27 2.10
113 114 8.470002 ACCATTTATGCTTTCCAGAAATTCTAC 58.530 33.333 0.00 0.00 41.27 2.59
114 115 8.469200 CCATTTATGCTTTCCAGAAATTCTACA 58.531 33.333 0.00 0.00 41.27 2.74
122 123 9.226345 GCTTTCCAGAAATTCTACATTATTTCG 57.774 33.333 0.00 0.00 42.67 3.46
123 124 9.722056 CTTTCCAGAAATTCTACATTATTTCGG 57.278 33.333 0.00 0.00 42.67 4.30
124 125 9.456147 TTTCCAGAAATTCTACATTATTTCGGA 57.544 29.630 0.00 0.00 42.67 4.55
125 126 9.627123 TTCCAGAAATTCTACATTATTTCGGAT 57.373 29.630 15.13 0.00 42.67 4.18
126 127 9.273016 TCCAGAAATTCTACATTATTTCGGATC 57.727 33.333 0.00 0.00 42.67 3.36
127 128 9.056005 CCAGAAATTCTACATTATTTCGGATCA 57.944 33.333 0.00 0.00 42.67 2.92
138 139 9.119418 ACATTATTTCGGATCAACAATATGTCA 57.881 29.630 0.00 0.00 0.00 3.58
141 142 6.618287 TTTCGGATCAACAATATGTCATCC 57.382 37.500 0.00 9.73 0.00 3.51
142 143 5.289083 TCGGATCAACAATATGTCATCCA 57.711 39.130 16.03 6.15 31.68 3.41
143 144 5.056480 TCGGATCAACAATATGTCATCCAC 58.944 41.667 16.03 0.00 31.68 4.02
144 145 4.815846 CGGATCAACAATATGTCATCCACA 59.184 41.667 16.03 0.00 40.18 4.17
172 173 7.602517 ACTTATCAGAAATGTTGTAGTGCTC 57.397 36.000 0.00 0.00 0.00 4.26
173 174 6.595716 ACTTATCAGAAATGTTGTAGTGCTCC 59.404 38.462 0.00 0.00 0.00 4.70
174 175 3.674997 TCAGAAATGTTGTAGTGCTCCC 58.325 45.455 0.00 0.00 0.00 4.30
175 176 2.416547 CAGAAATGTTGTAGTGCTCCCG 59.583 50.000 0.00 0.00 0.00 5.14
176 177 1.130561 GAAATGTTGTAGTGCTCCCGC 59.869 52.381 0.00 0.00 0.00 6.13
177 178 0.324943 AATGTTGTAGTGCTCCCGCT 59.675 50.000 0.00 0.00 36.97 5.52
178 179 0.108138 ATGTTGTAGTGCTCCCGCTC 60.108 55.000 0.00 0.00 36.97 5.03
179 180 1.292223 GTTGTAGTGCTCCCGCTCA 59.708 57.895 0.00 0.00 36.97 4.26
180 181 1.014564 GTTGTAGTGCTCCCGCTCAC 61.015 60.000 0.00 0.00 36.97 3.51
181 182 1.185618 TTGTAGTGCTCCCGCTCACT 61.186 55.000 0.00 0.00 44.76 3.41
182 183 1.185618 TGTAGTGCTCCCGCTCACTT 61.186 55.000 0.01 0.00 42.81 3.16
183 184 0.037232 GTAGTGCTCCCGCTCACTTT 60.037 55.000 0.01 0.00 42.81 2.66
184 185 0.246635 TAGTGCTCCCGCTCACTTTC 59.753 55.000 0.01 0.00 42.81 2.62
185 186 1.004440 GTGCTCCCGCTCACTTTCT 60.004 57.895 0.00 0.00 36.97 2.52
186 187 0.603975 GTGCTCCCGCTCACTTTCTT 60.604 55.000 0.00 0.00 36.97 2.52
187 188 0.603707 TGCTCCCGCTCACTTTCTTG 60.604 55.000 0.00 0.00 36.97 3.02
188 189 0.603975 GCTCCCGCTCACTTTCTTGT 60.604 55.000 0.00 0.00 0.00 3.16
189 190 1.337823 GCTCCCGCTCACTTTCTTGTA 60.338 52.381 0.00 0.00 0.00 2.41
190 191 2.870435 GCTCCCGCTCACTTTCTTGTAA 60.870 50.000 0.00 0.00 0.00 2.41
191 192 3.399330 CTCCCGCTCACTTTCTTGTAAA 58.601 45.455 0.00 0.00 0.00 2.01
192 193 4.003648 CTCCCGCTCACTTTCTTGTAAAT 58.996 43.478 0.00 0.00 0.00 1.40
193 194 5.155278 TCCCGCTCACTTTCTTGTAAATA 57.845 39.130 0.00 0.00 0.00 1.40
194 195 4.933400 TCCCGCTCACTTTCTTGTAAATAC 59.067 41.667 0.00 0.00 0.00 1.89
195 196 4.693566 CCCGCTCACTTTCTTGTAAATACA 59.306 41.667 0.00 0.00 0.00 2.29
196 197 5.180492 CCCGCTCACTTTCTTGTAAATACAA 59.820 40.000 5.92 5.92 43.32 2.41
221 222 9.908152 AAGTTTCTAGCAAACATTGTATAAACC 57.092 29.630 15.53 0.00 32.81 3.27
222 223 9.297037 AGTTTCTAGCAAACATTGTATAAACCT 57.703 29.630 15.53 0.00 32.81 3.50
228 229 8.757164 AGCAAACATTGTATAAACCTAAAAGC 57.243 30.769 0.00 0.00 0.00 3.51
229 230 8.585018 AGCAAACATTGTATAAACCTAAAAGCT 58.415 29.630 0.00 0.00 0.00 3.74
230 231 9.203421 GCAAACATTGTATAAACCTAAAAGCTT 57.797 29.630 0.00 0.00 0.00 3.74
238 239 9.515226 TGTATAAACCTAAAAGCTTTGATCACT 57.485 29.630 13.54 0.00 0.00 3.41
239 240 9.989869 GTATAAACCTAAAAGCTTTGATCACTC 57.010 33.333 13.54 0.00 0.00 3.51
240 241 5.966742 AACCTAAAAGCTTTGATCACTCC 57.033 39.130 13.54 0.00 0.00 3.85
241 242 4.985538 ACCTAAAAGCTTTGATCACTCCA 58.014 39.130 13.54 0.00 0.00 3.86
242 243 5.574188 ACCTAAAAGCTTTGATCACTCCAT 58.426 37.500 13.54 0.00 0.00 3.41
243 244 5.649831 ACCTAAAAGCTTTGATCACTCCATC 59.350 40.000 13.54 0.00 0.00 3.51
244 245 5.649395 CCTAAAAGCTTTGATCACTCCATCA 59.351 40.000 13.54 0.00 0.00 3.07
245 246 6.151648 CCTAAAAGCTTTGATCACTCCATCAA 59.848 38.462 13.54 0.00 40.36 2.57
246 247 6.409524 AAAAGCTTTGATCACTCCATCAAA 57.590 33.333 13.54 8.05 46.11 2.69
247 248 6.409524 AAAGCTTTGATCACTCCATCAAAA 57.590 33.333 11.80 0.00 47.00 2.44
248 249 5.382618 AGCTTTGATCACTCCATCAAAAC 57.617 39.130 9.31 5.86 47.00 2.43
249 250 4.828939 AGCTTTGATCACTCCATCAAAACA 59.171 37.500 9.31 0.00 47.00 2.83
250 251 5.479375 AGCTTTGATCACTCCATCAAAACAT 59.521 36.000 9.31 0.00 47.00 2.71
251 252 6.660521 AGCTTTGATCACTCCATCAAAACATA 59.339 34.615 9.31 0.00 47.00 2.29
252 253 7.341256 AGCTTTGATCACTCCATCAAAACATAT 59.659 33.333 9.31 0.00 47.00 1.78
253 254 8.623903 GCTTTGATCACTCCATCAAAACATATA 58.376 33.333 9.31 0.00 47.00 0.86
257 258 9.288576 TGATCACTCCATCAAAACATATATTCC 57.711 33.333 0.00 0.00 29.41 3.01
258 259 7.728847 TCACTCCATCAAAACATATATTCCG 57.271 36.000 0.00 0.00 0.00 4.30
259 260 7.505258 TCACTCCATCAAAACATATATTCCGA 58.495 34.615 0.00 0.00 0.00 4.55
260 261 7.657354 TCACTCCATCAAAACATATATTCCGAG 59.343 37.037 0.00 0.00 0.00 4.63
261 262 7.657354 CACTCCATCAAAACATATATTCCGAGA 59.343 37.037 0.00 0.00 0.00 4.04
262 263 7.875041 ACTCCATCAAAACATATATTCCGAGAG 59.125 37.037 0.00 0.00 0.00 3.20
300 301 5.539979 TGTTACTGTAACATAGCGTTTCCA 58.460 37.500 25.14 2.76 43.23 3.53
301 302 5.990386 TGTTACTGTAACATAGCGTTTCCAA 59.010 36.000 25.14 2.51 43.23 3.53
302 303 6.146510 TGTTACTGTAACATAGCGTTTCCAAG 59.853 38.462 25.14 0.00 43.23 3.61
303 304 4.890088 ACTGTAACATAGCGTTTCCAAGA 58.110 39.130 0.00 0.00 39.14 3.02
304 305 4.689345 ACTGTAACATAGCGTTTCCAAGAC 59.311 41.667 0.00 0.00 39.14 3.01
305 306 4.633175 TGTAACATAGCGTTTCCAAGACA 58.367 39.130 0.00 0.00 39.14 3.41
306 307 5.057819 TGTAACATAGCGTTTCCAAGACAA 58.942 37.500 0.00 0.00 39.14 3.18
307 308 4.749245 AACATAGCGTTTCCAAGACAAG 57.251 40.909 0.00 0.00 32.35 3.16
308 309 4.002906 ACATAGCGTTTCCAAGACAAGA 57.997 40.909 0.00 0.00 0.00 3.02
309 310 4.579869 ACATAGCGTTTCCAAGACAAGAT 58.420 39.130 0.00 0.00 0.00 2.40
310 311 4.393062 ACATAGCGTTTCCAAGACAAGATG 59.607 41.667 0.00 0.00 0.00 2.90
311 312 3.126001 AGCGTTTCCAAGACAAGATGA 57.874 42.857 0.00 0.00 0.00 2.92
312 313 3.070018 AGCGTTTCCAAGACAAGATGAG 58.930 45.455 0.00 0.00 0.00 2.90
313 314 2.808543 GCGTTTCCAAGACAAGATGAGT 59.191 45.455 0.00 0.00 0.00 3.41
314 315 3.120511 GCGTTTCCAAGACAAGATGAGTC 60.121 47.826 0.00 0.00 36.26 3.36
316 317 5.470368 CGTTTCCAAGACAAGATGAGTCTA 58.530 41.667 0.00 0.00 45.11 2.59
317 318 5.346281 CGTTTCCAAGACAAGATGAGTCTAC 59.654 44.000 0.00 0.00 45.11 2.59
318 319 6.223852 GTTTCCAAGACAAGATGAGTCTACA 58.776 40.000 0.00 0.00 45.11 2.74
319 320 6.419484 TTCCAAGACAAGATGAGTCTACAA 57.581 37.500 0.00 0.00 45.11 2.41
320 321 6.030548 TCCAAGACAAGATGAGTCTACAAG 57.969 41.667 0.00 0.00 45.11 3.16
321 322 5.775195 TCCAAGACAAGATGAGTCTACAAGA 59.225 40.000 0.00 0.00 45.11 3.02
322 323 6.438741 TCCAAGACAAGATGAGTCTACAAGAT 59.561 38.462 0.00 0.00 45.11 2.40
323 324 7.615757 TCCAAGACAAGATGAGTCTACAAGATA 59.384 37.037 0.00 0.00 45.11 1.98
324 325 8.253810 CCAAGACAAGATGAGTCTACAAGATAA 58.746 37.037 0.00 0.00 45.11 1.75
325 326 9.814899 CAAGACAAGATGAGTCTACAAGATAAT 57.185 33.333 0.00 0.00 45.11 1.28
353 354 7.598759 TGAAACCATCTAAGATACTACTCCC 57.401 40.000 0.00 0.00 0.00 4.30
354 355 7.363031 TGAAACCATCTAAGATACTACTCCCT 58.637 38.462 0.00 0.00 0.00 4.20
355 356 7.506261 TGAAACCATCTAAGATACTACTCCCTC 59.494 40.741 0.00 0.00 0.00 4.30
356 357 5.894653 ACCATCTAAGATACTACTCCCTCC 58.105 45.833 0.00 0.00 0.00 4.30
357 358 4.944930 CCATCTAAGATACTACTCCCTCCG 59.055 50.000 0.00 0.00 0.00 4.63
358 359 5.515184 CCATCTAAGATACTACTCCCTCCGT 60.515 48.000 0.00 0.00 0.00 4.69
359 360 5.643421 TCTAAGATACTACTCCCTCCGTT 57.357 43.478 0.00 0.00 0.00 4.44
360 361 5.619220 TCTAAGATACTACTCCCTCCGTTC 58.381 45.833 0.00 0.00 0.00 3.95
361 362 3.226682 AGATACTACTCCCTCCGTTCC 57.773 52.381 0.00 0.00 0.00 3.62
362 363 2.512896 AGATACTACTCCCTCCGTTCCA 59.487 50.000 0.00 0.00 0.00 3.53
363 364 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
364 365 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
365 366 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
366 367 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
367 368 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
368 369 4.720273 ACTACTCCCTCCGTTCCAAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
369 370 5.901276 ACTACTCCCTCCGTTCCAAAATATA 59.099 40.000 0.00 0.00 0.00 0.86
370 371 5.291905 ACTCCCTCCGTTCCAAAATATAG 57.708 43.478 0.00 0.00 0.00 1.31
371 372 4.720273 ACTCCCTCCGTTCCAAAATATAGT 59.280 41.667 0.00 0.00 0.00 2.12
372 373 5.031066 TCCCTCCGTTCCAAAATATAGTG 57.969 43.478 0.00 0.00 0.00 2.74
373 374 3.564225 CCCTCCGTTCCAAAATATAGTGC 59.436 47.826 0.00 0.00 0.00 4.40
374 375 3.247648 CCTCCGTTCCAAAATATAGTGCG 59.752 47.826 0.00 0.00 0.00 5.34
375 376 2.610374 TCCGTTCCAAAATATAGTGCGC 59.390 45.455 0.00 0.00 0.00 6.09
376 377 2.286772 CCGTTCCAAAATATAGTGCGCC 60.287 50.000 4.18 0.00 0.00 6.53
377 378 2.286772 CGTTCCAAAATATAGTGCGCCC 60.287 50.000 4.18 0.00 0.00 6.13
378 379 1.588674 TCCAAAATATAGTGCGCCCG 58.411 50.000 4.18 0.00 0.00 6.13
379 380 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.000 4.18 5.60 42.35 6.13
380 381 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
395 396 4.388499 GCGCTTCCCGAGGTCCAA 62.388 66.667 0.00 0.00 40.02 3.53
396 397 2.434359 CGCTTCCCGAGGTCCAAC 60.434 66.667 0.00 0.00 40.02 3.77
397 398 2.943978 CGCTTCCCGAGGTCCAACT 61.944 63.158 0.00 0.00 40.02 3.16
398 399 1.375326 GCTTCCCGAGGTCCAACTT 59.625 57.895 0.00 0.00 0.00 2.66
399 400 0.250770 GCTTCCCGAGGTCCAACTTT 60.251 55.000 0.00 0.00 0.00 2.66
400 401 1.523758 CTTCCCGAGGTCCAACTTTG 58.476 55.000 0.00 0.00 0.00 2.77
401 402 1.071699 CTTCCCGAGGTCCAACTTTGA 59.928 52.381 0.00 0.00 0.00 2.69
402 403 0.395312 TCCCGAGGTCCAACTTTGAC 59.605 55.000 0.00 0.00 0.00 3.18
403 404 0.605589 CCCGAGGTCCAACTTTGACC 60.606 60.000 4.16 4.16 39.18 4.02
404 405 0.107831 CCGAGGTCCAACTTTGACCA 59.892 55.000 13.24 0.00 41.22 4.02
405 406 1.271379 CCGAGGTCCAACTTTGACCAT 60.271 52.381 13.24 0.72 41.22 3.55
406 407 2.027561 CCGAGGTCCAACTTTGACCATA 60.028 50.000 13.24 0.00 41.22 2.74
407 408 3.558321 CCGAGGTCCAACTTTGACCATAA 60.558 47.826 13.24 0.00 41.22 1.90
408 409 4.069304 CGAGGTCCAACTTTGACCATAAA 58.931 43.478 13.24 0.00 41.22 1.40
409 410 4.700213 CGAGGTCCAACTTTGACCATAAAT 59.300 41.667 13.24 0.00 41.22 1.40
410 411 5.183140 CGAGGTCCAACTTTGACCATAAATT 59.817 40.000 13.24 0.00 41.22 1.82
411 412 6.294508 CGAGGTCCAACTTTGACCATAAATTT 60.295 38.462 13.24 0.00 41.22 1.82
412 413 7.094549 CGAGGTCCAACTTTGACCATAAATTTA 60.095 37.037 13.24 0.00 41.22 1.40
413 414 8.485578 AGGTCCAACTTTGACCATAAATTTAA 57.514 30.769 13.24 0.00 41.22 1.52
414 415 8.364894 AGGTCCAACTTTGACCATAAATTTAAC 58.635 33.333 13.24 0.00 41.22 2.01
415 416 7.601130 GGTCCAACTTTGACCATAAATTTAACC 59.399 37.037 1.21 0.00 38.76 2.85
416 417 8.145122 GTCCAACTTTGACCATAAATTTAACCA 58.855 33.333 1.21 0.00 0.00 3.67
417 418 8.705594 TCCAACTTTGACCATAAATTTAACCAA 58.294 29.630 1.21 2.19 0.00 3.67
418 419 8.769891 CCAACTTTGACCATAAATTTAACCAAC 58.230 33.333 1.21 0.00 0.00 3.77
419 420 8.484008 CAACTTTGACCATAAATTTAACCAACG 58.516 33.333 1.21 5.06 0.00 4.10
420 421 7.942990 ACTTTGACCATAAATTTAACCAACGA 58.057 30.769 1.21 0.00 0.00 3.85
421 422 8.079809 ACTTTGACCATAAATTTAACCAACGAG 58.920 33.333 1.21 3.35 0.00 4.18
422 423 7.747155 TTGACCATAAATTTAACCAACGAGA 57.253 32.000 1.21 0.00 0.00 4.04
423 424 7.136289 TGACCATAAATTTAACCAACGAGAC 57.864 36.000 1.21 0.00 0.00 3.36
424 425 6.149807 TGACCATAAATTTAACCAACGAGACC 59.850 38.462 1.21 0.00 0.00 3.85
425 426 6.005198 ACCATAAATTTAACCAACGAGACCA 58.995 36.000 1.21 0.00 0.00 4.02
426 427 6.490721 ACCATAAATTTAACCAACGAGACCAA 59.509 34.615 1.21 0.00 0.00 3.67
427 428 6.804783 CCATAAATTTAACCAACGAGACCAAC 59.195 38.462 1.21 0.00 0.00 3.77
428 429 7.308951 CCATAAATTTAACCAACGAGACCAACT 60.309 37.037 1.21 0.00 0.00 3.16
429 430 5.432885 AATTTAACCAACGAGACCAACTG 57.567 39.130 0.00 0.00 0.00 3.16
430 431 1.873698 TAACCAACGAGACCAACTGC 58.126 50.000 0.00 0.00 0.00 4.40
431 432 1.157870 AACCAACGAGACCAACTGCG 61.158 55.000 0.00 0.00 0.00 5.18
432 433 2.317609 CCAACGAGACCAACTGCGG 61.318 63.158 0.00 0.00 0.00 5.69
433 434 2.665185 AACGAGACCAACTGCGGC 60.665 61.111 0.00 0.00 0.00 6.53
440 441 4.697756 CCAACTGCGGCGGGAGAA 62.698 66.667 19.55 0.00 35.29 2.87
441 442 2.668212 CAACTGCGGCGGGAGAAA 60.668 61.111 19.55 0.00 35.29 2.52
442 443 2.112297 AACTGCGGCGGGAGAAAA 59.888 55.556 19.55 0.00 35.29 2.29
443 444 1.527380 AACTGCGGCGGGAGAAAAA 60.527 52.632 19.55 0.00 35.29 1.94
490 491 8.975410 TCGAATACGAATTCACCGATATAATT 57.025 30.769 6.22 0.00 45.74 1.40
491 492 9.414295 TCGAATACGAATTCACCGATATAATTT 57.586 29.630 6.22 0.00 45.74 1.82
495 496 7.908193 ACGAATTCACCGATATAATTTTTGC 57.092 32.000 6.22 0.00 0.00 3.68
496 497 7.703328 ACGAATTCACCGATATAATTTTTGCT 58.297 30.769 6.22 0.00 0.00 3.91
497 498 8.188139 ACGAATTCACCGATATAATTTTTGCTT 58.812 29.630 6.22 0.00 0.00 3.91
498 499 8.682016 CGAATTCACCGATATAATTTTTGCTTC 58.318 33.333 6.22 0.00 0.00 3.86
499 500 8.871686 AATTCACCGATATAATTTTTGCTTCC 57.128 30.769 0.00 0.00 0.00 3.46
500 501 6.055231 TCACCGATATAATTTTTGCTTCCG 57.945 37.500 0.00 0.00 0.00 4.30
501 502 4.675114 CACCGATATAATTTTTGCTTCCGC 59.325 41.667 0.00 0.00 0.00 5.54
502 503 4.226761 CCGATATAATTTTTGCTTCCGCC 58.773 43.478 0.00 0.00 34.43 6.13
503 504 3.906008 CGATATAATTTTTGCTTCCGCCG 59.094 43.478 0.00 0.00 34.43 6.46
504 505 1.921243 ATAATTTTTGCTTCCGCCGC 58.079 45.000 0.00 0.00 34.43 6.53
505 506 0.598562 TAATTTTTGCTTCCGCCGCA 59.401 45.000 0.00 0.00 35.22 5.69
506 507 0.249657 AATTTTTGCTTCCGCCGCAA 60.250 45.000 0.00 0.00 44.83 4.85
507 508 0.037419 ATTTTTGCTTCCGCCGCAAT 60.037 45.000 5.33 0.00 45.67 3.56
508 509 0.665972 TTTTTGCTTCCGCCGCAATC 60.666 50.000 5.33 0.00 45.67 2.67
509 510 2.794627 TTTTGCTTCCGCCGCAATCG 62.795 55.000 5.33 0.00 45.67 3.34
520 521 3.436001 CGCAATCGGTCTTGGTAGT 57.564 52.632 0.00 0.00 0.00 2.73
521 522 1.722011 CGCAATCGGTCTTGGTAGTT 58.278 50.000 0.00 0.00 0.00 2.24
522 523 2.883574 CGCAATCGGTCTTGGTAGTTA 58.116 47.619 0.00 0.00 0.00 2.24
523 524 3.255725 CGCAATCGGTCTTGGTAGTTAA 58.744 45.455 0.00 0.00 0.00 2.01
524 525 3.680937 CGCAATCGGTCTTGGTAGTTAAA 59.319 43.478 0.00 0.00 0.00 1.52
525 526 4.331717 CGCAATCGGTCTTGGTAGTTAAAT 59.668 41.667 0.00 0.00 0.00 1.40
526 527 5.163794 CGCAATCGGTCTTGGTAGTTAAATT 60.164 40.000 0.00 0.00 0.00 1.82
527 528 6.617879 GCAATCGGTCTTGGTAGTTAAATTT 58.382 36.000 0.00 0.00 0.00 1.82
528 529 7.413219 CGCAATCGGTCTTGGTAGTTAAATTTA 60.413 37.037 0.00 0.00 0.00 1.40
529 530 7.695201 GCAATCGGTCTTGGTAGTTAAATTTAC 59.305 37.037 0.00 0.00 0.00 2.01
530 531 6.949578 TCGGTCTTGGTAGTTAAATTTACG 57.050 37.500 0.00 0.00 0.00 3.18
531 532 5.868801 TCGGTCTTGGTAGTTAAATTTACGG 59.131 40.000 0.00 0.00 0.00 4.02
532 533 5.639082 CGGTCTTGGTAGTTAAATTTACGGT 59.361 40.000 0.00 0.00 0.00 4.83
533 534 6.183360 CGGTCTTGGTAGTTAAATTTACGGTC 60.183 42.308 0.00 0.00 0.00 4.79
534 535 6.650390 GGTCTTGGTAGTTAAATTTACGGTCA 59.350 38.462 0.00 0.00 0.00 4.02
535 536 7.173047 GGTCTTGGTAGTTAAATTTACGGTCAA 59.827 37.037 0.00 0.00 0.00 3.18
536 537 8.558700 GTCTTGGTAGTTAAATTTACGGTCAAA 58.441 33.333 0.00 0.00 0.00 2.69
537 538 8.776470 TCTTGGTAGTTAAATTTACGGTCAAAG 58.224 33.333 0.00 0.00 0.00 2.77
538 539 8.449251 TTGGTAGTTAAATTTACGGTCAAAGT 57.551 30.769 0.00 0.00 0.00 2.66
539 540 8.449251 TGGTAGTTAAATTTACGGTCAAAGTT 57.551 30.769 0.00 0.00 31.36 2.66
540 541 8.344098 TGGTAGTTAAATTTACGGTCAAAGTTG 58.656 33.333 0.00 0.00 29.44 3.16
541 542 8.558700 GGTAGTTAAATTTACGGTCAAAGTTGA 58.441 33.333 0.00 0.00 34.20 3.18
542 543 9.934190 GTAGTTAAATTTACGGTCAAAGTTGAA 57.066 29.630 0.00 0.00 39.21 2.69
544 545 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
545 546 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
546 547 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
547 548 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
548 549 0.655733 CGGTCAAAGTTGAAGCACGT 59.344 50.000 0.00 0.00 39.21 4.49
549 550 1.594518 CGGTCAAAGTTGAAGCACGTG 60.595 52.381 12.28 12.28 39.21 4.49
550 551 1.268539 GGTCAAAGTTGAAGCACGTGG 60.269 52.381 18.88 0.00 39.21 4.94
551 552 1.668751 GTCAAAGTTGAAGCACGTGGA 59.331 47.619 18.88 0.00 39.21 4.02
552 553 2.290641 GTCAAAGTTGAAGCACGTGGAT 59.709 45.455 18.88 0.00 39.21 3.41
553 554 3.496884 GTCAAAGTTGAAGCACGTGGATA 59.503 43.478 18.88 0.00 39.21 2.59
554 555 3.745975 TCAAAGTTGAAGCACGTGGATAG 59.254 43.478 18.88 0.00 33.55 2.08
555 556 3.678056 AAGTTGAAGCACGTGGATAGA 57.322 42.857 18.88 0.00 0.00 1.98
556 557 3.238108 AGTTGAAGCACGTGGATAGAG 57.762 47.619 18.88 0.00 0.00 2.43
557 558 2.093973 AGTTGAAGCACGTGGATAGAGG 60.094 50.000 18.88 0.00 0.00 3.69
558 559 1.847328 TGAAGCACGTGGATAGAGGA 58.153 50.000 18.88 0.00 0.00 3.71
559 560 2.176045 TGAAGCACGTGGATAGAGGAA 58.824 47.619 18.88 0.00 0.00 3.36
560 561 2.166459 TGAAGCACGTGGATAGAGGAAG 59.834 50.000 18.88 0.00 0.00 3.46
561 562 0.461961 AGCACGTGGATAGAGGAAGC 59.538 55.000 18.88 0.00 0.00 3.86
562 563 0.175760 GCACGTGGATAGAGGAAGCA 59.824 55.000 18.88 0.00 0.00 3.91
563 564 1.927895 CACGTGGATAGAGGAAGCAC 58.072 55.000 7.95 0.00 0.00 4.40
564 565 1.478510 CACGTGGATAGAGGAAGCACT 59.521 52.381 7.95 0.00 0.00 4.40
565 566 2.688446 CACGTGGATAGAGGAAGCACTA 59.312 50.000 7.95 0.00 0.00 2.74
566 567 2.688958 ACGTGGATAGAGGAAGCACTAC 59.311 50.000 0.00 0.00 0.00 2.73
567 568 2.688446 CGTGGATAGAGGAAGCACTACA 59.312 50.000 0.00 0.00 0.00 2.74
568 569 3.319405 CGTGGATAGAGGAAGCACTACAT 59.681 47.826 0.00 0.00 0.00 2.29
569 570 4.202161 CGTGGATAGAGGAAGCACTACATT 60.202 45.833 0.00 0.00 0.00 2.71
570 571 5.009710 CGTGGATAGAGGAAGCACTACATTA 59.990 44.000 0.00 0.00 0.00 1.90
571 572 6.294787 CGTGGATAGAGGAAGCACTACATTAT 60.295 42.308 0.00 0.00 0.00 1.28
572 573 6.870965 GTGGATAGAGGAAGCACTACATTATG 59.129 42.308 0.00 0.00 0.00 1.90
573 574 6.782494 TGGATAGAGGAAGCACTACATTATGA 59.218 38.462 0.00 0.00 0.00 2.15
574 575 7.290014 TGGATAGAGGAAGCACTACATTATGAA 59.710 37.037 0.00 0.00 0.00 2.57
575 576 8.150945 GGATAGAGGAAGCACTACATTATGAAA 58.849 37.037 0.00 0.00 0.00 2.69
576 577 9.717942 GATAGAGGAAGCACTACATTATGAAAT 57.282 33.333 0.00 0.00 0.00 2.17
577 578 7.798596 AGAGGAAGCACTACATTATGAAATG 57.201 36.000 0.00 0.00 46.66 2.32
578 579 6.769822 AGAGGAAGCACTACATTATGAAATGG 59.230 38.462 0.00 0.00 45.72 3.16
579 580 6.662755 AGGAAGCACTACATTATGAAATGGA 58.337 36.000 0.00 0.00 45.72 3.41
603 604 9.043079 GGAGGAAGTACTATTATGTTACTTTGC 57.957 37.037 0.00 0.00 31.90 3.68
604 605 9.595823 GAGGAAGTACTATTATGTTACTTTGCA 57.404 33.333 0.00 0.00 31.90 4.08
617 618 8.807948 ATGTTACTTTGCATTATGAAGGTAGT 57.192 30.769 0.00 0.00 0.00 2.73
618 619 9.899661 ATGTTACTTTGCATTATGAAGGTAGTA 57.100 29.630 0.00 0.00 0.00 1.82
619 620 9.727859 TGTTACTTTGCATTATGAAGGTAGTAA 57.272 29.630 0.00 0.00 0.00 2.24
620 621 9.983804 GTTACTTTGCATTATGAAGGTAGTAAC 57.016 33.333 13.90 13.90 38.55 2.50
621 622 9.953565 TTACTTTGCATTATGAAGGTAGTAACT 57.046 29.630 0.00 0.00 0.00 2.24
622 623 8.863872 ACTTTGCATTATGAAGGTAGTAACTT 57.136 30.769 0.00 0.00 0.00 2.66
623 624 9.953565 ACTTTGCATTATGAAGGTAGTAACTTA 57.046 29.630 0.00 0.00 0.00 2.24
625 626 8.958119 TTGCATTATGAAGGTAGTAACTTAGG 57.042 34.615 0.00 0.00 0.00 2.69
626 627 6.990349 TGCATTATGAAGGTAGTAACTTAGGC 59.010 38.462 0.00 0.00 0.00 3.93
627 628 7.147549 TGCATTATGAAGGTAGTAACTTAGGCT 60.148 37.037 0.00 0.00 0.00 4.58
628 629 8.365647 GCATTATGAAGGTAGTAACTTAGGCTA 58.634 37.037 0.00 0.00 0.00 3.93
629 630 9.915629 CATTATGAAGGTAGTAACTTAGGCTAG 57.084 37.037 0.00 0.00 0.00 3.42
630 631 9.657728 ATTATGAAGGTAGTAACTTAGGCTAGT 57.342 33.333 0.00 0.00 0.00 2.57
633 634 9.657728 ATGAAGGTAGTAACTTAGGCTAGTATT 57.342 33.333 0.00 0.00 0.00 1.89
644 645 9.877178 AACTTAGGCTAGTATTATATGCATGAC 57.123 33.333 10.16 0.00 0.00 3.06
645 646 9.035890 ACTTAGGCTAGTATTATATGCATGACA 57.964 33.333 10.16 0.00 0.00 3.58
646 647 9.307121 CTTAGGCTAGTATTATATGCATGACAC 57.693 37.037 10.16 0.15 0.00 3.67
647 648 6.644347 AGGCTAGTATTATATGCATGACACC 58.356 40.000 10.16 3.53 0.00 4.16
648 649 6.213397 AGGCTAGTATTATATGCATGACACCA 59.787 38.462 10.16 0.00 0.00 4.17
649 650 6.536582 GGCTAGTATTATATGCATGACACCAG 59.463 42.308 10.16 0.25 0.00 4.00
650 651 7.099764 GCTAGTATTATATGCATGACACCAGT 58.900 38.462 10.16 0.00 0.00 4.00
651 652 7.276658 GCTAGTATTATATGCATGACACCAGTC 59.723 40.741 10.16 0.00 45.19 3.51
652 653 7.308450 AGTATTATATGCATGACACCAGTCT 57.692 36.000 10.16 0.00 45.20 3.24
653 654 8.422577 AGTATTATATGCATGACACCAGTCTA 57.577 34.615 10.16 0.00 45.20 2.59
654 655 8.870116 AGTATTATATGCATGACACCAGTCTAA 58.130 33.333 10.16 0.00 45.20 2.10
655 656 9.144747 GTATTATATGCATGACACCAGTCTAAG 57.855 37.037 10.16 0.00 45.20 2.18
656 657 3.988976 ATGCATGACACCAGTCTAAGT 57.011 42.857 0.00 0.00 45.20 2.24
657 658 3.769739 TGCATGACACCAGTCTAAGTT 57.230 42.857 0.00 0.00 45.20 2.66
658 659 4.882842 TGCATGACACCAGTCTAAGTTA 57.117 40.909 0.00 0.00 45.20 2.24
659 660 4.566004 TGCATGACACCAGTCTAAGTTAC 58.434 43.478 0.00 0.00 45.20 2.50
660 661 4.283467 TGCATGACACCAGTCTAAGTTACT 59.717 41.667 0.00 0.00 45.20 2.24
661 662 4.865365 GCATGACACCAGTCTAAGTTACTC 59.135 45.833 0.00 0.00 45.20 2.59
662 663 4.761235 TGACACCAGTCTAAGTTACTCG 57.239 45.455 0.00 0.00 45.20 4.18
663 664 3.057736 TGACACCAGTCTAAGTTACTCGC 60.058 47.826 0.00 0.00 45.20 5.03
664 665 2.230750 ACACCAGTCTAAGTTACTCGCC 59.769 50.000 0.00 0.00 0.00 5.54
665 666 2.230508 CACCAGTCTAAGTTACTCGCCA 59.769 50.000 0.00 0.00 0.00 5.69
666 667 2.230750 ACCAGTCTAAGTTACTCGCCAC 59.769 50.000 0.00 0.00 0.00 5.01
667 668 2.492484 CCAGTCTAAGTTACTCGCCACT 59.508 50.000 0.00 0.00 0.00 4.00
668 669 3.693085 CCAGTCTAAGTTACTCGCCACTA 59.307 47.826 0.00 0.00 0.00 2.74
669 670 4.338682 CCAGTCTAAGTTACTCGCCACTAT 59.661 45.833 0.00 0.00 0.00 2.12
670 671 5.274718 CAGTCTAAGTTACTCGCCACTATG 58.725 45.833 0.00 0.00 0.00 2.23
671 672 5.066117 CAGTCTAAGTTACTCGCCACTATGA 59.934 44.000 0.00 0.00 0.00 2.15
672 673 5.066246 AGTCTAAGTTACTCGCCACTATGAC 59.934 44.000 0.00 0.00 0.00 3.06
673 674 3.521947 AAGTTACTCGCCACTATGACC 57.478 47.619 0.00 0.00 0.00 4.02
674 675 2.453521 AGTTACTCGCCACTATGACCA 58.546 47.619 0.00 0.00 0.00 4.02
675 676 2.427453 AGTTACTCGCCACTATGACCAG 59.573 50.000 0.00 0.00 0.00 4.00
676 677 0.744874 TACTCGCCACTATGACCAGC 59.255 55.000 0.00 0.00 0.00 4.85
677 678 1.227380 CTCGCCACTATGACCAGCC 60.227 63.158 0.00 0.00 0.00 4.85
753 757 9.871238 AGTTCCGCTACATATTAATATAACCTG 57.129 33.333 7.65 0.05 0.00 4.00
754 758 9.649167 GTTCCGCTACATATTAATATAACCTGT 57.351 33.333 7.65 5.89 0.00 4.00
759 763 9.146984 GCTACATATTAATATAACCTGTTCGCA 57.853 33.333 7.65 0.00 0.00 5.10
804 816 0.525668 GACGTGATACCCAGTCAGCG 60.526 60.000 0.00 0.00 34.09 5.18
823 835 1.609061 CGTCAAACACAGAGGCCAGAT 60.609 52.381 5.01 0.00 0.00 2.90
913 931 3.945285 TCTCCCTTTATAAAGCAAAGCCG 59.055 43.478 18.18 4.45 34.69 5.52
949 967 0.877743 CACCACAACACACACACACA 59.122 50.000 0.00 0.00 0.00 3.72
950 968 1.135717 CACCACAACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
1008 1026 0.912486 AGGATAGGATAATGGCCGGC 59.088 55.000 21.18 21.18 0.00 6.13
1014 1032 0.951040 GGATAATGGCCGGCGAGAAG 60.951 60.000 22.54 0.00 0.00 2.85
1015 1033 0.033504 GATAATGGCCGGCGAGAAGA 59.966 55.000 22.54 3.31 0.00 2.87
1016 1034 0.249911 ATAATGGCCGGCGAGAAGAC 60.250 55.000 22.54 4.79 0.00 3.01
1546 1765 4.415332 GCGGGTTCAGCGTCGAGA 62.415 66.667 0.00 0.00 0.00 4.04
1827 3741 5.659463 TGTCCAATGTATTTGCCTATTTGC 58.341 37.500 0.00 0.00 33.73 3.68
1918 4199 1.597663 CCACGACGATTCCTATTTGGC 59.402 52.381 0.00 0.00 35.26 4.52
1920 4201 1.135527 ACGACGATTCCTATTTGGCGA 59.864 47.619 0.00 0.00 35.26 5.54
1956 4237 3.781770 GACCCAGCGCATCCTCTCG 62.782 68.421 11.47 0.00 0.00 4.04
1976 4257 3.785859 ATGCGCCACATCCTCGGT 61.786 61.111 4.18 0.00 31.52 4.69
1997 4278 2.472695 TGAGCCGCTCATACTGTTTT 57.527 45.000 19.36 0.00 35.39 2.43
1998 4279 2.346803 TGAGCCGCTCATACTGTTTTC 58.653 47.619 19.36 0.00 35.39 2.29
1999 4280 2.028112 TGAGCCGCTCATACTGTTTTCT 60.028 45.455 19.36 0.00 35.39 2.52
2002 4283 3.437049 AGCCGCTCATACTGTTTTCTTTC 59.563 43.478 0.00 0.00 0.00 2.62
2004 4285 4.003648 CCGCTCATACTGTTTTCTTTCCT 58.996 43.478 0.00 0.00 0.00 3.36
2009 4290 7.113544 CGCTCATACTGTTTTCTTTCCTTTTTC 59.886 37.037 0.00 0.00 0.00 2.29
2047 4329 6.823182 CCTGGTTTTTCTTTCCTTTTTGTCAT 59.177 34.615 0.00 0.00 0.00 3.06
2085 4367 9.868160 TTCTTTTCTTTTCCTTCTATCCTTTCT 57.132 29.630 0.00 0.00 0.00 2.52
2086 4368 9.868160 TCTTTTCTTTTCCTTCTATCCTTTCTT 57.132 29.630 0.00 0.00 0.00 2.52
2340 4636 7.209471 AGCCACGAACATTATTTTAAAGTCA 57.791 32.000 0.00 0.00 0.00 3.41
2343 4639 7.540745 GCCACGAACATTATTTTAAAGTCATGT 59.459 33.333 5.06 5.06 0.00 3.21
2374 4670 5.568685 TGAACTCACGAACATTTTTGGAA 57.431 34.783 0.00 0.00 0.00 3.53
2378 4674 7.221838 TGAACTCACGAACATTTTTGGAAATTC 59.778 33.333 0.00 0.00 33.25 2.17
2379 4675 6.805713 ACTCACGAACATTTTTGGAAATTCT 58.194 32.000 0.00 0.00 33.25 2.40
2495 4791 8.980143 ATCCACAAACATTTTATACCTTTTCG 57.020 30.769 0.00 0.00 0.00 3.46
2496 4792 8.167605 TCCACAAACATTTTATACCTTTTCGA 57.832 30.769 0.00 0.00 0.00 3.71
2497 4793 8.630917 TCCACAAACATTTTATACCTTTTCGAA 58.369 29.630 0.00 0.00 0.00 3.71
2498 4794 9.250624 CCACAAACATTTTATACCTTTTCGAAA 57.749 29.630 6.47 6.47 0.00 3.46
2609 4906 7.708322 TGATTCACAATCCGTTTTGAAATTTGA 59.292 29.630 0.00 0.00 37.09 2.69
2663 4961 7.153217 AGAAGGAAAACGAAAACAGAAAAGA 57.847 32.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.670521 TGGGCATCAAGATCTATAGAAATAGA 57.329 34.615 6.52 3.89 46.31 1.98
9 10 9.902684 ATTGGGCATCAAGATCTATAGAAATAG 57.097 33.333 6.52 0.00 38.95 1.73
12 13 9.676861 CATATTGGGCATCAAGATCTATAGAAA 57.323 33.333 6.52 0.00 35.34 2.52
13 14 8.829746 ACATATTGGGCATCAAGATCTATAGAA 58.170 33.333 6.52 0.00 35.34 2.10
14 15 8.384693 ACATATTGGGCATCAAGATCTATAGA 57.615 34.615 4.57 4.57 35.34 1.98
17 18 7.555554 GCTTACATATTGGGCATCAAGATCTAT 59.444 37.037 0.00 0.00 35.34 1.98
18 19 6.881065 GCTTACATATTGGGCATCAAGATCTA 59.119 38.462 0.00 0.00 35.34 1.98
19 20 5.709164 GCTTACATATTGGGCATCAAGATCT 59.291 40.000 0.00 0.00 35.34 2.75
20 21 5.474532 TGCTTACATATTGGGCATCAAGATC 59.525 40.000 0.00 0.00 35.34 2.75
21 22 5.387788 TGCTTACATATTGGGCATCAAGAT 58.612 37.500 0.00 0.00 37.75 2.40
22 23 4.790937 TGCTTACATATTGGGCATCAAGA 58.209 39.130 0.00 0.00 38.95 3.02
23 24 4.558095 GCTGCTTACATATTGGGCATCAAG 60.558 45.833 0.00 0.00 38.95 3.02
24 25 3.318839 GCTGCTTACATATTGGGCATCAA 59.681 43.478 0.00 0.00 40.01 2.57
25 26 2.886523 GCTGCTTACATATTGGGCATCA 59.113 45.455 0.00 0.00 32.39 3.07
26 27 3.152341 AGCTGCTTACATATTGGGCATC 58.848 45.455 0.00 0.00 32.39 3.91
27 28 3.234234 AGCTGCTTACATATTGGGCAT 57.766 42.857 0.00 0.00 32.39 4.40
28 29 2.734755 AGCTGCTTACATATTGGGCA 57.265 45.000 0.00 0.00 0.00 5.36
29 30 5.474876 AGATAAAGCTGCTTACATATTGGGC 59.525 40.000 16.31 0.00 0.00 5.36
30 31 7.335422 CCTAGATAAAGCTGCTTACATATTGGG 59.665 40.741 16.31 10.74 0.00 4.12
31 32 7.880195 ACCTAGATAAAGCTGCTTACATATTGG 59.120 37.037 16.31 18.78 0.00 3.16
32 33 8.839310 ACCTAGATAAAGCTGCTTACATATTG 57.161 34.615 16.31 9.90 0.00 1.90
33 34 8.875168 AGACCTAGATAAAGCTGCTTACATATT 58.125 33.333 16.31 1.00 0.00 1.28
34 35 8.429237 AGACCTAGATAAAGCTGCTTACATAT 57.571 34.615 16.31 9.90 0.00 1.78
35 36 7.841282 AGACCTAGATAAAGCTGCTTACATA 57.159 36.000 16.31 5.01 0.00 2.29
36 37 6.739331 AGACCTAGATAAAGCTGCTTACAT 57.261 37.500 16.31 11.85 0.00 2.29
37 38 6.407074 GGAAGACCTAGATAAAGCTGCTTACA 60.407 42.308 16.31 7.19 0.00 2.41
38 39 5.986741 GGAAGACCTAGATAAAGCTGCTTAC 59.013 44.000 16.31 10.23 0.00 2.34
39 40 5.900123 AGGAAGACCTAGATAAAGCTGCTTA 59.100 40.000 16.31 4.76 45.83 3.09
40 41 4.719273 AGGAAGACCTAGATAAAGCTGCTT 59.281 41.667 9.53 9.53 45.83 3.91
41 42 4.294347 AGGAAGACCTAGATAAAGCTGCT 58.706 43.478 0.00 0.00 45.83 4.24
42 43 4.681074 AGGAAGACCTAGATAAAGCTGC 57.319 45.455 0.00 0.00 45.83 5.25
71 72 9.423061 GCATAAATGGTTGTTTGAAGAGTATTT 57.577 29.630 0.00 0.00 0.00 1.40
72 73 8.806146 AGCATAAATGGTTGTTTGAAGAGTATT 58.194 29.630 0.00 0.00 34.35 1.89
73 74 8.353423 AGCATAAATGGTTGTTTGAAGAGTAT 57.647 30.769 0.00 0.00 34.35 2.12
74 75 7.759489 AGCATAAATGGTTGTTTGAAGAGTA 57.241 32.000 0.00 0.00 34.35 2.59
75 76 6.655078 AGCATAAATGGTTGTTTGAAGAGT 57.345 33.333 0.00 0.00 34.35 3.24
76 77 7.116805 GGAAAGCATAAATGGTTGTTTGAAGAG 59.883 37.037 8.07 0.00 46.62 2.85
77 78 6.928492 GGAAAGCATAAATGGTTGTTTGAAGA 59.072 34.615 8.07 0.00 46.62 2.87
78 79 6.705381 TGGAAAGCATAAATGGTTGTTTGAAG 59.295 34.615 8.07 0.00 46.62 3.02
79 80 6.586344 TGGAAAGCATAAATGGTTGTTTGAA 58.414 32.000 8.07 0.00 46.62 2.69
80 81 6.041409 TCTGGAAAGCATAAATGGTTGTTTGA 59.959 34.615 8.07 3.44 46.62 2.69
81 82 6.222389 TCTGGAAAGCATAAATGGTTGTTTG 58.778 36.000 8.07 1.45 46.62 2.93
82 83 6.418057 TCTGGAAAGCATAAATGGTTGTTT 57.582 33.333 8.07 0.00 46.62 2.83
83 84 6.418057 TTCTGGAAAGCATAAATGGTTGTT 57.582 33.333 8.07 0.00 46.62 2.83
84 85 6.418057 TTTCTGGAAAGCATAAATGGTTGT 57.582 33.333 8.07 0.02 46.62 3.32
85 86 7.820872 AGAATTTCTGGAAAGCATAAATGGTTG 59.179 33.333 8.07 0.00 46.62 3.77
87 88 7.486407 AGAATTTCTGGAAAGCATAAATGGT 57.514 32.000 0.00 0.00 40.78 3.55
88 89 8.469200 TGTAGAATTTCTGGAAAGCATAAATGG 58.531 33.333 9.22 0.00 33.32 3.16
96 97 9.226345 CGAAATAATGTAGAATTTCTGGAAAGC 57.774 33.333 9.22 0.00 39.08 3.51
97 98 9.722056 CCGAAATAATGTAGAATTTCTGGAAAG 57.278 33.333 9.22 0.00 39.08 2.62
98 99 9.456147 TCCGAAATAATGTAGAATTTCTGGAAA 57.544 29.630 9.22 0.00 39.27 3.13
99 100 9.627123 ATCCGAAATAATGTAGAATTTCTGGAA 57.373 29.630 9.22 0.00 41.87 3.53
100 101 9.273016 GATCCGAAATAATGTAGAATTTCTGGA 57.727 33.333 9.22 16.23 42.24 3.86
101 102 9.056005 TGATCCGAAATAATGTAGAATTTCTGG 57.944 33.333 9.22 8.40 39.08 3.86
112 113 9.119418 TGACATATTGTTGATCCGAAATAATGT 57.881 29.630 0.00 0.00 0.00 2.71
115 116 8.783093 GGATGACATATTGTTGATCCGAAATAA 58.217 33.333 0.00 0.00 33.11 1.40
116 117 7.936301 TGGATGACATATTGTTGATCCGAAATA 59.064 33.333 11.79 0.00 40.12 1.40
117 118 6.772233 TGGATGACATATTGTTGATCCGAAAT 59.228 34.615 11.79 0.00 40.12 2.17
118 119 6.038161 GTGGATGACATATTGTTGATCCGAAA 59.962 38.462 11.79 0.00 40.12 3.46
119 120 5.527214 GTGGATGACATATTGTTGATCCGAA 59.473 40.000 11.79 0.00 40.12 4.30
120 121 5.056480 GTGGATGACATATTGTTGATCCGA 58.944 41.667 11.79 3.50 40.12 4.55
121 122 4.815846 TGTGGATGACATATTGTTGATCCG 59.184 41.667 11.79 0.00 40.12 4.18
122 123 6.889301 ATGTGGATGACATATTGTTGATCC 57.111 37.500 10.51 10.51 43.96 3.36
146 147 9.319143 GAGCACTACAACATTTCTGATAAGTAT 57.681 33.333 0.00 0.00 0.00 2.12
147 148 7.764443 GGAGCACTACAACATTTCTGATAAGTA 59.236 37.037 0.00 0.00 0.00 2.24
148 149 6.595716 GGAGCACTACAACATTTCTGATAAGT 59.404 38.462 0.00 0.00 0.00 2.24
149 150 6.037610 GGGAGCACTACAACATTTCTGATAAG 59.962 42.308 0.00 0.00 0.00 1.73
150 151 5.880332 GGGAGCACTACAACATTTCTGATAA 59.120 40.000 0.00 0.00 0.00 1.75
151 152 5.428253 GGGAGCACTACAACATTTCTGATA 58.572 41.667 0.00 0.00 0.00 2.15
152 153 4.265073 GGGAGCACTACAACATTTCTGAT 58.735 43.478 0.00 0.00 0.00 2.90
153 154 3.674997 GGGAGCACTACAACATTTCTGA 58.325 45.455 0.00 0.00 0.00 3.27
154 155 2.416547 CGGGAGCACTACAACATTTCTG 59.583 50.000 0.00 0.00 0.00 3.02
155 156 2.699954 CGGGAGCACTACAACATTTCT 58.300 47.619 0.00 0.00 0.00 2.52
170 171 2.743636 TACAAGAAAGTGAGCGGGAG 57.256 50.000 0.00 0.00 0.00 4.30
171 172 3.478857 TTTACAAGAAAGTGAGCGGGA 57.521 42.857 0.00 0.00 0.00 5.14
172 173 4.693566 TGTATTTACAAGAAAGTGAGCGGG 59.306 41.667 0.00 0.00 32.40 6.13
173 174 5.856126 TGTATTTACAAGAAAGTGAGCGG 57.144 39.130 0.00 0.00 32.40 5.52
195 196 9.908152 GGTTTATACAATGTTTGCTAGAAACTT 57.092 29.630 14.65 8.71 33.73 2.66
196 197 9.297037 AGGTTTATACAATGTTTGCTAGAAACT 57.703 29.630 14.65 0.00 33.73 2.66
202 203 9.849166 GCTTTTAGGTTTATACAATGTTTGCTA 57.151 29.630 0.00 0.00 0.00 3.49
203 204 8.585018 AGCTTTTAGGTTTATACAATGTTTGCT 58.415 29.630 0.00 0.00 0.00 3.91
204 205 8.757164 AGCTTTTAGGTTTATACAATGTTTGC 57.243 30.769 0.00 0.00 0.00 3.68
212 213 9.515226 AGTGATCAAAGCTTTTAGGTTTATACA 57.485 29.630 9.53 2.84 43.27 2.29
213 214 9.989869 GAGTGATCAAAGCTTTTAGGTTTATAC 57.010 33.333 9.53 0.16 43.27 1.47
214 215 9.174166 GGAGTGATCAAAGCTTTTAGGTTTATA 57.826 33.333 9.53 0.00 43.27 0.98
215 216 7.669722 TGGAGTGATCAAAGCTTTTAGGTTTAT 59.330 33.333 9.53 0.00 43.27 1.40
216 217 7.001674 TGGAGTGATCAAAGCTTTTAGGTTTA 58.998 34.615 9.53 0.00 43.27 2.01
217 218 5.833131 TGGAGTGATCAAAGCTTTTAGGTTT 59.167 36.000 9.53 0.00 45.69 3.27
218 219 5.385198 TGGAGTGATCAAAGCTTTTAGGTT 58.615 37.500 9.53 0.00 37.57 3.50
219 220 4.985538 TGGAGTGATCAAAGCTTTTAGGT 58.014 39.130 9.53 0.00 0.00 3.08
220 221 5.649395 TGATGGAGTGATCAAAGCTTTTAGG 59.351 40.000 9.53 0.00 29.11 2.69
221 222 6.748333 TGATGGAGTGATCAAAGCTTTTAG 57.252 37.500 9.53 0.00 29.11 1.85
222 223 7.523293 TTTGATGGAGTGATCAAAGCTTTTA 57.477 32.000 9.53 1.36 43.98 1.52
223 224 6.409524 TTTGATGGAGTGATCAAAGCTTTT 57.590 33.333 9.53 0.00 43.98 2.27
231 232 9.288576 GGAATATATGTTTTGATGGAGTGATCA 57.711 33.333 0.00 0.00 0.00 2.92
232 233 8.446273 CGGAATATATGTTTTGATGGAGTGATC 58.554 37.037 0.00 0.00 0.00 2.92
233 234 8.156820 TCGGAATATATGTTTTGATGGAGTGAT 58.843 33.333 0.00 0.00 0.00 3.06
234 235 7.505258 TCGGAATATATGTTTTGATGGAGTGA 58.495 34.615 0.00 0.00 0.00 3.41
235 236 7.657354 TCTCGGAATATATGTTTTGATGGAGTG 59.343 37.037 0.00 0.00 0.00 3.51
236 237 7.735917 TCTCGGAATATATGTTTTGATGGAGT 58.264 34.615 0.00 0.00 0.00 3.85
237 238 7.332926 CCTCTCGGAATATATGTTTTGATGGAG 59.667 40.741 0.00 0.00 0.00 3.86
238 239 7.161404 CCTCTCGGAATATATGTTTTGATGGA 58.839 38.462 0.00 0.00 0.00 3.41
239 240 6.936900 ACCTCTCGGAATATATGTTTTGATGG 59.063 38.462 0.00 0.00 0.00 3.51
240 241 7.095060 CCACCTCTCGGAATATATGTTTTGATG 60.095 40.741 0.00 0.00 0.00 3.07
241 242 6.936900 CCACCTCTCGGAATATATGTTTTGAT 59.063 38.462 0.00 0.00 0.00 2.57
242 243 6.126883 ACCACCTCTCGGAATATATGTTTTGA 60.127 38.462 0.00 0.00 0.00 2.69
243 244 6.055588 ACCACCTCTCGGAATATATGTTTTG 58.944 40.000 0.00 0.00 0.00 2.44
244 245 6.248569 ACCACCTCTCGGAATATATGTTTT 57.751 37.500 0.00 0.00 0.00 2.43
245 246 5.888982 ACCACCTCTCGGAATATATGTTT 57.111 39.130 0.00 0.00 0.00 2.83
246 247 6.325545 TGTTACCACCTCTCGGAATATATGTT 59.674 38.462 0.00 0.00 0.00 2.71
247 248 5.836898 TGTTACCACCTCTCGGAATATATGT 59.163 40.000 0.00 0.00 0.00 2.29
248 249 6.340962 TGTTACCACCTCTCGGAATATATG 57.659 41.667 0.00 0.00 0.00 1.78
249 250 8.660295 TTATGTTACCACCTCTCGGAATATAT 57.340 34.615 0.00 0.00 0.00 0.86
250 251 8.660295 ATTATGTTACCACCTCTCGGAATATA 57.340 34.615 0.00 0.00 0.00 0.86
251 252 6.989155 TTATGTTACCACCTCTCGGAATAT 57.011 37.500 0.00 0.00 0.00 1.28
252 253 6.989155 ATTATGTTACCACCTCTCGGAATA 57.011 37.500 0.00 0.00 0.00 1.75
253 254 5.888982 ATTATGTTACCACCTCTCGGAAT 57.111 39.130 0.00 0.00 0.00 3.01
254 255 6.325545 ACATATTATGTTACCACCTCTCGGAA 59.674 38.462 3.40 0.00 41.63 4.30
255 256 5.836898 ACATATTATGTTACCACCTCTCGGA 59.163 40.000 3.40 0.00 41.63 4.55
256 257 6.097915 ACATATTATGTTACCACCTCTCGG 57.902 41.667 3.40 0.00 41.63 4.63
278 279 6.366877 TCTTGGAAACGCTATGTTACAGTAAC 59.633 38.462 15.58 15.58 40.84 2.50
279 280 6.366877 GTCTTGGAAACGCTATGTTACAGTAA 59.633 38.462 0.00 0.00 40.84 2.24
280 281 5.865552 GTCTTGGAAACGCTATGTTACAGTA 59.134 40.000 0.00 0.00 40.84 2.74
281 282 4.689345 GTCTTGGAAACGCTATGTTACAGT 59.311 41.667 0.00 0.00 40.84 3.55
282 283 4.688879 TGTCTTGGAAACGCTATGTTACAG 59.311 41.667 0.00 0.00 40.84 2.74
283 284 4.633175 TGTCTTGGAAACGCTATGTTACA 58.367 39.130 0.00 0.00 40.84 2.41
284 285 5.407387 TCTTGTCTTGGAAACGCTATGTTAC 59.593 40.000 0.00 0.00 40.84 2.50
285 286 5.543714 TCTTGTCTTGGAAACGCTATGTTA 58.456 37.500 0.00 0.00 40.84 2.41
286 287 4.385825 TCTTGTCTTGGAAACGCTATGTT 58.614 39.130 0.00 0.00 44.59 2.71
287 288 4.002906 TCTTGTCTTGGAAACGCTATGT 57.997 40.909 0.00 0.00 0.00 2.29
288 289 4.631377 TCATCTTGTCTTGGAAACGCTATG 59.369 41.667 0.00 0.00 0.00 2.23
289 290 4.832248 TCATCTTGTCTTGGAAACGCTAT 58.168 39.130 0.00 0.00 0.00 2.97
290 291 4.245660 CTCATCTTGTCTTGGAAACGCTA 58.754 43.478 0.00 0.00 0.00 4.26
291 292 3.070018 CTCATCTTGTCTTGGAAACGCT 58.930 45.455 0.00 0.00 0.00 5.07
292 293 2.808543 ACTCATCTTGTCTTGGAAACGC 59.191 45.455 0.00 0.00 0.00 4.84
293 294 4.310769 AGACTCATCTTGTCTTGGAAACG 58.689 43.478 0.00 0.00 41.45 3.60
294 295 6.223852 TGTAGACTCATCTTGTCTTGGAAAC 58.776 40.000 1.67 0.00 41.45 2.78
295 296 6.419484 TGTAGACTCATCTTGTCTTGGAAA 57.581 37.500 1.67 0.00 41.45 3.13
296 297 6.267699 TCTTGTAGACTCATCTTGTCTTGGAA 59.732 38.462 1.67 0.00 41.45 3.53
297 298 5.775195 TCTTGTAGACTCATCTTGTCTTGGA 59.225 40.000 1.67 0.00 41.45 3.53
298 299 6.030548 TCTTGTAGACTCATCTTGTCTTGG 57.969 41.667 1.67 0.00 41.45 3.61
299 300 9.814899 ATTATCTTGTAGACTCATCTTGTCTTG 57.185 33.333 1.67 0.00 41.45 3.02
327 328 8.652290 GGGAGTAGTATCTTAGATGGTTTCATT 58.348 37.037 4.78 0.00 32.98 2.57
328 329 8.013667 AGGGAGTAGTATCTTAGATGGTTTCAT 58.986 37.037 4.78 0.00 36.09 2.57
329 330 7.363031 AGGGAGTAGTATCTTAGATGGTTTCA 58.637 38.462 4.78 0.00 0.00 2.69
330 331 7.039574 GGAGGGAGTAGTATCTTAGATGGTTTC 60.040 44.444 4.78 0.00 0.00 2.78
331 332 6.783482 GGAGGGAGTAGTATCTTAGATGGTTT 59.217 42.308 4.78 0.00 0.00 3.27
332 333 6.316513 GGAGGGAGTAGTATCTTAGATGGTT 58.683 44.000 4.78 0.00 0.00 3.67
333 334 5.515184 CGGAGGGAGTAGTATCTTAGATGGT 60.515 48.000 4.78 0.00 0.00 3.55
334 335 4.944930 CGGAGGGAGTAGTATCTTAGATGG 59.055 50.000 4.78 0.00 0.00 3.51
335 336 5.562635 ACGGAGGGAGTAGTATCTTAGATG 58.437 45.833 4.78 0.00 0.00 2.90
336 337 5.846528 ACGGAGGGAGTAGTATCTTAGAT 57.153 43.478 0.00 0.00 0.00 1.98
337 338 5.455899 GGAACGGAGGGAGTAGTATCTTAGA 60.456 48.000 0.00 0.00 0.00 2.10
338 339 4.761227 GGAACGGAGGGAGTAGTATCTTAG 59.239 50.000 0.00 0.00 0.00 2.18
339 340 4.166725 TGGAACGGAGGGAGTAGTATCTTA 59.833 45.833 0.00 0.00 0.00 2.10
340 341 3.053095 TGGAACGGAGGGAGTAGTATCTT 60.053 47.826 0.00 0.00 0.00 2.40
341 342 2.512896 TGGAACGGAGGGAGTAGTATCT 59.487 50.000 0.00 0.00 0.00 1.98
342 343 2.941480 TGGAACGGAGGGAGTAGTATC 58.059 52.381 0.00 0.00 0.00 2.24
343 344 3.393426 TTGGAACGGAGGGAGTAGTAT 57.607 47.619 0.00 0.00 0.00 2.12
344 345 2.905415 TTGGAACGGAGGGAGTAGTA 57.095 50.000 0.00 0.00 0.00 1.82
345 346 2.019807 TTTGGAACGGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
346 347 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
347 348 5.901276 ACTATATTTTGGAACGGAGGGAGTA 59.099 40.000 0.00 0.00 0.00 2.59
348 349 4.720273 ACTATATTTTGGAACGGAGGGAGT 59.280 41.667 0.00 0.00 0.00 3.85
349 350 5.057149 CACTATATTTTGGAACGGAGGGAG 58.943 45.833 0.00 0.00 0.00 4.30
350 351 4.685030 GCACTATATTTTGGAACGGAGGGA 60.685 45.833 0.00 0.00 0.00 4.20
351 352 3.564225 GCACTATATTTTGGAACGGAGGG 59.436 47.826 0.00 0.00 0.00 4.30
352 353 3.247648 CGCACTATATTTTGGAACGGAGG 59.752 47.826 0.00 0.00 0.00 4.30
353 354 3.303132 GCGCACTATATTTTGGAACGGAG 60.303 47.826 0.30 0.00 0.00 4.63
354 355 2.610374 GCGCACTATATTTTGGAACGGA 59.390 45.455 0.30 0.00 0.00 4.69
355 356 2.286772 GGCGCACTATATTTTGGAACGG 60.287 50.000 10.83 0.00 0.00 4.44
356 357 2.286772 GGGCGCACTATATTTTGGAACG 60.287 50.000 10.83 0.00 0.00 3.95
357 358 2.286772 CGGGCGCACTATATTTTGGAAC 60.287 50.000 8.62 0.00 0.00 3.62
358 359 1.944024 CGGGCGCACTATATTTTGGAA 59.056 47.619 8.62 0.00 0.00 3.53
359 360 1.588674 CGGGCGCACTATATTTTGGA 58.411 50.000 8.62 0.00 0.00 3.53
360 361 0.040425 GCGGGCGCACTATATTTTGG 60.040 55.000 8.62 0.00 41.49 3.28
361 362 0.384230 CGCGGGCGCACTATATTTTG 60.384 55.000 8.62 0.00 42.06 2.44
362 363 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
363 364 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
378 379 4.388499 TTGGACCTCGGGAAGCGC 62.388 66.667 0.00 0.00 0.00 5.92
379 380 2.434359 GTTGGACCTCGGGAAGCG 60.434 66.667 0.00 0.00 0.00 4.68
380 381 0.250770 AAAGTTGGACCTCGGGAAGC 60.251 55.000 0.00 0.00 0.00 3.86
381 382 1.071699 TCAAAGTTGGACCTCGGGAAG 59.928 52.381 0.00 0.00 0.00 3.46
382 383 1.133363 TCAAAGTTGGACCTCGGGAA 58.867 50.000 0.00 0.00 0.00 3.97
383 384 0.395312 GTCAAAGTTGGACCTCGGGA 59.605 55.000 0.00 0.00 0.00 5.14
384 385 2.928416 GTCAAAGTTGGACCTCGGG 58.072 57.895 0.00 0.00 0.00 5.14
390 391 8.145122 TGGTTAAATTTATGGTCAAAGTTGGAC 58.855 33.333 1.31 1.31 29.44 4.02
391 392 8.251383 TGGTTAAATTTATGGTCAAAGTTGGA 57.749 30.769 0.00 0.00 29.44 3.53
392 393 8.769891 GTTGGTTAAATTTATGGTCAAAGTTGG 58.230 33.333 0.00 0.00 29.44 3.77
393 394 8.484008 CGTTGGTTAAATTTATGGTCAAAGTTG 58.516 33.333 0.00 0.00 29.44 3.16
394 395 8.414778 TCGTTGGTTAAATTTATGGTCAAAGTT 58.585 29.630 0.00 0.00 31.36 2.66
395 396 7.942990 TCGTTGGTTAAATTTATGGTCAAAGT 58.057 30.769 0.00 0.00 0.00 2.66
396 397 8.293867 TCTCGTTGGTTAAATTTATGGTCAAAG 58.706 33.333 0.00 4.88 0.00 2.77
397 398 8.077386 GTCTCGTTGGTTAAATTTATGGTCAAA 58.923 33.333 0.00 0.00 0.00 2.69
398 399 7.308710 GGTCTCGTTGGTTAAATTTATGGTCAA 60.309 37.037 0.00 0.00 0.00 3.18
399 400 6.149807 GGTCTCGTTGGTTAAATTTATGGTCA 59.850 38.462 0.00 0.00 0.00 4.02
400 401 6.149807 TGGTCTCGTTGGTTAAATTTATGGTC 59.850 38.462 0.00 0.00 0.00 4.02
401 402 6.005198 TGGTCTCGTTGGTTAAATTTATGGT 58.995 36.000 0.00 0.00 0.00 3.55
402 403 6.503589 TGGTCTCGTTGGTTAAATTTATGG 57.496 37.500 0.00 0.00 0.00 2.74
403 404 7.537306 CAGTTGGTCTCGTTGGTTAAATTTATG 59.463 37.037 0.00 0.00 0.00 1.90
404 405 7.590279 CAGTTGGTCTCGTTGGTTAAATTTAT 58.410 34.615 0.00 0.00 0.00 1.40
405 406 6.513720 GCAGTTGGTCTCGTTGGTTAAATTTA 60.514 38.462 0.00 0.00 0.00 1.40
406 407 5.735070 GCAGTTGGTCTCGTTGGTTAAATTT 60.735 40.000 0.00 0.00 0.00 1.82
407 408 4.261447 GCAGTTGGTCTCGTTGGTTAAATT 60.261 41.667 0.00 0.00 0.00 1.82
408 409 3.252458 GCAGTTGGTCTCGTTGGTTAAAT 59.748 43.478 0.00 0.00 0.00 1.40
409 410 2.614983 GCAGTTGGTCTCGTTGGTTAAA 59.385 45.455 0.00 0.00 0.00 1.52
410 411 2.215196 GCAGTTGGTCTCGTTGGTTAA 58.785 47.619 0.00 0.00 0.00 2.01
411 412 1.870580 CGCAGTTGGTCTCGTTGGTTA 60.871 52.381 0.00 0.00 0.00 2.85
412 413 1.157870 CGCAGTTGGTCTCGTTGGTT 61.158 55.000 0.00 0.00 0.00 3.67
413 414 1.594293 CGCAGTTGGTCTCGTTGGT 60.594 57.895 0.00 0.00 0.00 3.67
414 415 2.317609 CCGCAGTTGGTCTCGTTGG 61.318 63.158 0.00 0.00 0.00 3.77
415 416 2.954753 GCCGCAGTTGGTCTCGTTG 61.955 63.158 0.00 0.00 0.00 4.10
416 417 2.665185 GCCGCAGTTGGTCTCGTT 60.665 61.111 0.00 0.00 0.00 3.85
423 424 4.697756 TTCTCCCGCCGCAGTTGG 62.698 66.667 0.00 0.00 0.00 3.77
424 425 1.791103 TTTTTCTCCCGCCGCAGTTG 61.791 55.000 0.00 0.00 0.00 3.16
425 426 1.527380 TTTTTCTCCCGCCGCAGTT 60.527 52.632 0.00 0.00 0.00 3.16
426 427 2.112297 TTTTTCTCCCGCCGCAGT 59.888 55.556 0.00 0.00 0.00 4.40
465 466 8.975410 AATTATATCGGTGAATTCGTATTCGA 57.025 30.769 9.79 5.17 42.55 3.71
469 470 9.607285 GCAAAAATTATATCGGTGAATTCGTAT 57.393 29.630 0.04 0.00 0.00 3.06
470 471 8.832521 AGCAAAAATTATATCGGTGAATTCGTA 58.167 29.630 0.04 0.00 0.00 3.43
471 472 7.703328 AGCAAAAATTATATCGGTGAATTCGT 58.297 30.769 0.04 0.00 0.00 3.85
472 473 8.560576 AAGCAAAAATTATATCGGTGAATTCG 57.439 30.769 0.04 0.00 0.00 3.34
473 474 8.968242 GGAAGCAAAAATTATATCGGTGAATTC 58.032 33.333 0.00 0.00 0.00 2.17
474 475 7.647715 CGGAAGCAAAAATTATATCGGTGAATT 59.352 33.333 0.00 0.00 0.00 2.17
475 476 7.138736 CGGAAGCAAAAATTATATCGGTGAAT 58.861 34.615 0.00 0.00 0.00 2.57
476 477 6.491394 CGGAAGCAAAAATTATATCGGTGAA 58.509 36.000 0.00 0.00 0.00 3.18
477 478 6.055231 CGGAAGCAAAAATTATATCGGTGA 57.945 37.500 0.00 0.00 0.00 4.02
502 503 1.722011 AACTACCAAGACCGATTGCG 58.278 50.000 0.00 0.00 37.24 4.85
503 504 5.813080 ATTTAACTACCAAGACCGATTGC 57.187 39.130 0.00 0.00 0.00 3.56
504 505 7.901377 CGTAAATTTAACTACCAAGACCGATTG 59.099 37.037 0.00 0.00 0.00 2.67
505 506 7.064966 CCGTAAATTTAACTACCAAGACCGATT 59.935 37.037 0.00 0.00 0.00 3.34
506 507 6.536224 CCGTAAATTTAACTACCAAGACCGAT 59.464 38.462 0.00 0.00 0.00 4.18
507 508 5.868801 CCGTAAATTTAACTACCAAGACCGA 59.131 40.000 0.00 0.00 0.00 4.69
508 509 5.639082 ACCGTAAATTTAACTACCAAGACCG 59.361 40.000 0.00 0.00 0.00 4.79
509 510 6.650390 TGACCGTAAATTTAACTACCAAGACC 59.350 38.462 0.00 0.00 0.00 3.85
510 511 7.656707 TGACCGTAAATTTAACTACCAAGAC 57.343 36.000 0.00 0.00 0.00 3.01
511 512 8.674263 TTTGACCGTAAATTTAACTACCAAGA 57.326 30.769 0.00 0.00 0.00 3.02
512 513 8.562052 ACTTTGACCGTAAATTTAACTACCAAG 58.438 33.333 0.00 2.45 0.00 3.61
513 514 8.449251 ACTTTGACCGTAAATTTAACTACCAA 57.551 30.769 0.00 0.00 0.00 3.67
514 515 8.344098 CAACTTTGACCGTAAATTTAACTACCA 58.656 33.333 0.00 0.00 0.00 3.25
515 516 8.558700 TCAACTTTGACCGTAAATTTAACTACC 58.441 33.333 0.00 0.00 31.01 3.18
516 517 9.934190 TTCAACTTTGACCGTAAATTTAACTAC 57.066 29.630 0.00 0.00 36.83 2.73
518 519 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
519 520 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
520 521 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
521 522 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
522 523 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
523 524 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
524 525 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
525 526 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
526 527 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
527 528 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
528 529 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
529 530 0.655733 ACGTGCTTCAACTTTGACCG 59.344 50.000 0.00 0.00 36.83 4.79
530 531 1.268539 CCACGTGCTTCAACTTTGACC 60.269 52.381 10.91 0.00 36.83 4.02
531 532 1.668751 TCCACGTGCTTCAACTTTGAC 59.331 47.619 10.91 0.00 36.83 3.18
532 533 2.031258 TCCACGTGCTTCAACTTTGA 57.969 45.000 10.91 0.00 34.92 2.69
533 534 3.745975 TCTATCCACGTGCTTCAACTTTG 59.254 43.478 10.91 0.00 0.00 2.77
534 535 3.997021 CTCTATCCACGTGCTTCAACTTT 59.003 43.478 10.91 0.00 0.00 2.66
535 536 3.589988 CTCTATCCACGTGCTTCAACTT 58.410 45.455 10.91 0.00 0.00 2.66
536 537 2.093973 CCTCTATCCACGTGCTTCAACT 60.094 50.000 10.91 0.00 0.00 3.16
537 538 2.094182 TCCTCTATCCACGTGCTTCAAC 60.094 50.000 10.91 0.00 0.00 3.18
538 539 2.176045 TCCTCTATCCACGTGCTTCAA 58.824 47.619 10.91 0.00 0.00 2.69
539 540 1.847328 TCCTCTATCCACGTGCTTCA 58.153 50.000 10.91 0.00 0.00 3.02
540 541 2.815478 CTTCCTCTATCCACGTGCTTC 58.185 52.381 10.91 0.00 0.00 3.86
541 542 1.134670 GCTTCCTCTATCCACGTGCTT 60.135 52.381 10.91 1.47 0.00 3.91
542 543 0.461961 GCTTCCTCTATCCACGTGCT 59.538 55.000 10.91 1.67 0.00 4.40
543 544 0.175760 TGCTTCCTCTATCCACGTGC 59.824 55.000 10.91 0.00 0.00 5.34
544 545 1.478510 AGTGCTTCCTCTATCCACGTG 59.521 52.381 9.08 9.08 0.00 4.49
545 546 1.853963 AGTGCTTCCTCTATCCACGT 58.146 50.000 0.00 0.00 0.00 4.49
546 547 2.688446 TGTAGTGCTTCCTCTATCCACG 59.312 50.000 0.00 0.00 0.00 4.94
547 548 4.946478 ATGTAGTGCTTCCTCTATCCAC 57.054 45.455 0.00 0.00 0.00 4.02
548 549 6.782494 TCATAATGTAGTGCTTCCTCTATCCA 59.218 38.462 0.00 0.00 0.00 3.41
549 550 7.233389 TCATAATGTAGTGCTTCCTCTATCC 57.767 40.000 0.00 0.00 0.00 2.59
550 551 9.717942 ATTTCATAATGTAGTGCTTCCTCTATC 57.282 33.333 0.00 0.00 0.00 2.08
551 552 9.499479 CATTTCATAATGTAGTGCTTCCTCTAT 57.501 33.333 0.00 0.00 37.06 1.98
552 553 7.933577 CCATTTCATAATGTAGTGCTTCCTCTA 59.066 37.037 0.00 0.00 39.62 2.43
553 554 6.769822 CCATTTCATAATGTAGTGCTTCCTCT 59.230 38.462 0.00 0.00 39.62 3.69
554 555 6.767902 TCCATTTCATAATGTAGTGCTTCCTC 59.232 38.462 0.00 0.00 39.62 3.71
555 556 6.662755 TCCATTTCATAATGTAGTGCTTCCT 58.337 36.000 0.00 0.00 39.62 3.36
556 557 6.016777 CCTCCATTTCATAATGTAGTGCTTCC 60.017 42.308 0.00 0.00 39.62 3.46
557 558 6.767902 TCCTCCATTTCATAATGTAGTGCTTC 59.232 38.462 0.00 0.00 39.62 3.86
558 559 6.662755 TCCTCCATTTCATAATGTAGTGCTT 58.337 36.000 0.00 0.00 39.62 3.91
559 560 6.252599 TCCTCCATTTCATAATGTAGTGCT 57.747 37.500 0.00 0.00 39.62 4.40
560 561 6.543831 ACTTCCTCCATTTCATAATGTAGTGC 59.456 38.462 0.00 0.00 39.62 4.40
561 562 9.046296 GTACTTCCTCCATTTCATAATGTAGTG 57.954 37.037 0.00 0.00 39.62 2.74
562 563 8.993424 AGTACTTCCTCCATTTCATAATGTAGT 58.007 33.333 0.00 0.00 39.62 2.73
577 578 9.043079 GCAAAGTAACATAATAGTACTTCCTCC 57.957 37.037 0.00 0.00 31.42 4.30
578 579 9.595823 TGCAAAGTAACATAATAGTACTTCCTC 57.404 33.333 0.00 0.00 31.42 3.71
591 592 9.899661 ACTACCTTCATAATGCAAAGTAACATA 57.100 29.630 0.00 0.00 0.00 2.29
592 593 8.807948 ACTACCTTCATAATGCAAAGTAACAT 57.192 30.769 0.00 0.00 0.00 2.71
593 594 9.727859 TTACTACCTTCATAATGCAAAGTAACA 57.272 29.630 0.00 0.00 0.00 2.41
594 595 9.983804 GTTACTACCTTCATAATGCAAAGTAAC 57.016 33.333 0.00 0.00 39.37 2.50
595 596 9.953565 AGTTACTACCTTCATAATGCAAAGTAA 57.046 29.630 0.00 0.00 0.00 2.24
596 597 9.953565 AAGTTACTACCTTCATAATGCAAAGTA 57.046 29.630 0.00 0.00 0.00 2.24
597 598 8.863872 AAGTTACTACCTTCATAATGCAAAGT 57.136 30.769 0.00 0.00 0.00 2.66
599 600 9.391006 CCTAAGTTACTACCTTCATAATGCAAA 57.609 33.333 0.00 0.00 0.00 3.68
600 601 7.497909 GCCTAAGTTACTACCTTCATAATGCAA 59.502 37.037 0.00 0.00 0.00 4.08
601 602 6.990349 GCCTAAGTTACTACCTTCATAATGCA 59.010 38.462 0.00 0.00 0.00 3.96
602 603 7.217906 AGCCTAAGTTACTACCTTCATAATGC 58.782 38.462 0.00 0.00 0.00 3.56
603 604 9.915629 CTAGCCTAAGTTACTACCTTCATAATG 57.084 37.037 0.00 0.00 0.00 1.90
604 605 9.657728 ACTAGCCTAAGTTACTACCTTCATAAT 57.342 33.333 0.00 0.00 0.00 1.28
607 608 9.657728 AATACTAGCCTAAGTTACTACCTTCAT 57.342 33.333 0.00 0.00 0.00 2.57
618 619 9.877178 GTCATGCATATAATACTAGCCTAAGTT 57.123 33.333 0.00 0.00 0.00 2.66
619 620 9.035890 TGTCATGCATATAATACTAGCCTAAGT 57.964 33.333 0.00 0.00 0.00 2.24
620 621 9.307121 GTGTCATGCATATAATACTAGCCTAAG 57.693 37.037 0.00 0.00 0.00 2.18
621 622 8.258007 GGTGTCATGCATATAATACTAGCCTAA 58.742 37.037 0.00 0.00 0.00 2.69
622 623 7.398904 TGGTGTCATGCATATAATACTAGCCTA 59.601 37.037 0.00 0.00 0.00 3.93
623 624 6.213397 TGGTGTCATGCATATAATACTAGCCT 59.787 38.462 0.00 0.00 0.00 4.58
624 625 6.406370 TGGTGTCATGCATATAATACTAGCC 58.594 40.000 0.00 0.00 0.00 3.93
625 626 7.099764 ACTGGTGTCATGCATATAATACTAGC 58.900 38.462 0.00 0.00 0.00 3.42
626 627 8.526978 AGACTGGTGTCATGCATATAATACTAG 58.473 37.037 0.00 6.73 45.20 2.57
627 628 8.422577 AGACTGGTGTCATGCATATAATACTA 57.577 34.615 0.00 0.00 45.20 1.82
628 629 7.308450 AGACTGGTGTCATGCATATAATACT 57.692 36.000 0.00 0.00 45.20 2.12
629 630 9.144747 CTTAGACTGGTGTCATGCATATAATAC 57.855 37.037 0.00 0.00 45.20 1.89
630 631 8.870116 ACTTAGACTGGTGTCATGCATATAATA 58.130 33.333 0.00 0.00 45.20 0.98
631 632 7.739825 ACTTAGACTGGTGTCATGCATATAAT 58.260 34.615 0.00 0.00 45.20 1.28
632 633 7.124573 ACTTAGACTGGTGTCATGCATATAA 57.875 36.000 0.00 0.00 45.20 0.98
633 634 6.731292 ACTTAGACTGGTGTCATGCATATA 57.269 37.500 0.00 0.00 45.20 0.86
634 635 5.620738 ACTTAGACTGGTGTCATGCATAT 57.379 39.130 0.00 0.00 45.20 1.78
635 636 5.420725 AACTTAGACTGGTGTCATGCATA 57.579 39.130 0.00 0.00 45.20 3.14
636 637 3.988976 ACTTAGACTGGTGTCATGCAT 57.011 42.857 0.00 0.00 45.20 3.96
637 638 3.769739 AACTTAGACTGGTGTCATGCA 57.230 42.857 0.00 0.00 45.20 3.96
638 639 4.822026 AGTAACTTAGACTGGTGTCATGC 58.178 43.478 0.00 0.00 45.20 4.06
639 640 5.096169 CGAGTAACTTAGACTGGTGTCATG 58.904 45.833 0.00 0.00 45.20 3.07
640 641 4.380655 GCGAGTAACTTAGACTGGTGTCAT 60.381 45.833 0.00 0.00 45.20 3.06
641 642 3.057736 GCGAGTAACTTAGACTGGTGTCA 60.058 47.826 0.00 0.00 45.20 3.58
642 643 3.500014 GCGAGTAACTTAGACTGGTGTC 58.500 50.000 0.00 0.00 43.22 3.67
643 644 2.230750 GGCGAGTAACTTAGACTGGTGT 59.769 50.000 0.00 0.00 0.00 4.16
644 645 2.230508 TGGCGAGTAACTTAGACTGGTG 59.769 50.000 0.00 0.00 0.00 4.17
645 646 2.230750 GTGGCGAGTAACTTAGACTGGT 59.769 50.000 0.00 0.00 0.00 4.00
646 647 2.492484 AGTGGCGAGTAACTTAGACTGG 59.508 50.000 0.00 0.00 0.00 4.00
647 648 3.851976 AGTGGCGAGTAACTTAGACTG 57.148 47.619 0.00 0.00 0.00 3.51
648 649 5.066246 GTCATAGTGGCGAGTAACTTAGACT 59.934 44.000 0.00 0.00 31.58 3.24
649 650 5.272397 GTCATAGTGGCGAGTAACTTAGAC 58.728 45.833 0.00 0.00 0.00 2.59
650 651 4.337555 GGTCATAGTGGCGAGTAACTTAGA 59.662 45.833 0.00 0.00 0.00 2.10
651 652 4.097437 TGGTCATAGTGGCGAGTAACTTAG 59.903 45.833 0.00 0.00 0.00 2.18
652 653 4.018490 TGGTCATAGTGGCGAGTAACTTA 58.982 43.478 0.00 0.00 0.00 2.24
653 654 2.829720 TGGTCATAGTGGCGAGTAACTT 59.170 45.455 0.00 0.00 0.00 2.66
654 655 2.427453 CTGGTCATAGTGGCGAGTAACT 59.573 50.000 0.00 0.00 0.00 2.24
655 656 2.810650 CTGGTCATAGTGGCGAGTAAC 58.189 52.381 0.00 0.00 0.00 2.50
656 657 1.136305 GCTGGTCATAGTGGCGAGTAA 59.864 52.381 0.00 0.00 30.17 2.24
657 658 0.744874 GCTGGTCATAGTGGCGAGTA 59.255 55.000 0.00 0.00 30.17 2.59
658 659 1.517832 GCTGGTCATAGTGGCGAGT 59.482 57.895 0.00 0.00 30.17 4.18
659 660 1.227380 GGCTGGTCATAGTGGCGAG 60.227 63.158 0.00 0.00 30.67 5.03
660 661 1.264749 AAGGCTGGTCATAGTGGCGA 61.265 55.000 0.00 0.00 0.00 5.54
661 662 0.464036 TAAGGCTGGTCATAGTGGCG 59.536 55.000 0.00 0.00 0.00 5.69
662 663 1.811941 GCTAAGGCTGGTCATAGTGGC 60.812 57.143 0.00 0.00 35.22 5.01
663 664 1.486310 TGCTAAGGCTGGTCATAGTGG 59.514 52.381 0.00 0.00 39.59 4.00
664 665 2.988010 TGCTAAGGCTGGTCATAGTG 57.012 50.000 0.00 0.00 39.59 2.74
665 666 3.041211 TGATGCTAAGGCTGGTCATAGT 58.959 45.455 0.00 0.00 39.59 2.12
666 667 3.758755 TGATGCTAAGGCTGGTCATAG 57.241 47.619 0.00 0.00 39.59 2.23
667 668 5.484998 TCATATGATGCTAAGGCTGGTCATA 59.515 40.000 0.00 0.00 39.55 2.15
668 669 4.287845 TCATATGATGCTAAGGCTGGTCAT 59.712 41.667 0.00 0.00 38.36 3.06
669 670 3.647590 TCATATGATGCTAAGGCTGGTCA 59.352 43.478 0.00 0.00 39.59 4.02
670 671 4.277515 TCATATGATGCTAAGGCTGGTC 57.722 45.455 0.00 0.00 39.59 4.02
671 672 4.287845 TGATCATATGATGCTAAGGCTGGT 59.712 41.667 22.86 0.00 39.59 4.00
672 673 4.840271 TGATCATATGATGCTAAGGCTGG 58.160 43.478 22.86 0.00 39.59 4.85
673 674 6.183360 CCAATGATCATATGATGCTAAGGCTG 60.183 42.308 22.86 8.11 39.59 4.85
674 675 5.886474 CCAATGATCATATGATGCTAAGGCT 59.114 40.000 22.86 0.00 39.59 4.58
675 676 5.884232 TCCAATGATCATATGATGCTAAGGC 59.116 40.000 22.86 7.10 34.37 4.35
676 677 7.041984 CGATCCAATGATCATATGATGCTAAGG 60.042 40.741 22.86 16.08 46.50 2.69
677 678 7.041984 CCGATCCAATGATCATATGATGCTAAG 60.042 40.741 22.86 8.76 46.50 2.18
753 757 0.874390 TGTGCTCAAGGAATGCGAAC 59.126 50.000 0.00 0.00 0.00 3.95
754 758 1.825090 ATGTGCTCAAGGAATGCGAA 58.175 45.000 0.00 0.00 0.00 4.70
759 763 8.680903 CAAGAATAGTTTATGTGCTCAAGGAAT 58.319 33.333 0.00 0.00 0.00 3.01
804 816 1.808945 CATCTGGCCTCTGTGTTTGAC 59.191 52.381 3.32 0.00 0.00 3.18
823 835 0.666274 GAACACGACGGCATCTCACA 60.666 55.000 0.00 0.00 0.00 3.58
884 902 4.949856 TGCTTTATAAAGGGAGAAAGGCAG 59.050 41.667 23.37 0.00 36.53 4.85
913 931 3.058914 GTGGTGTAATTGTGTGCTCTCAC 60.059 47.826 0.00 0.00 43.40 3.51
949 967 1.777272 AGGAGCTCTGTTTGTTTCCCT 59.223 47.619 14.64 0.00 0.00 4.20
950 968 1.882623 CAGGAGCTCTGTTTGTTTCCC 59.117 52.381 14.64 0.00 38.64 3.97
1008 1026 3.441290 AGCCCCGTCGTCTTCTCG 61.441 66.667 0.00 0.00 0.00 4.04
1465 1684 2.126580 GACGTCCACGAACCCGAG 60.127 66.667 3.51 0.00 43.02 4.63
1705 1937 4.311816 ACTCCATGAAAGCAAACAGTTG 57.688 40.909 0.00 0.00 37.83 3.16
1827 3741 4.087182 AGTACCTCACATATATGGGGTCG 58.913 47.826 9.37 11.08 33.66 4.79
1920 4201 3.851976 GTCGCTATCTATCGACCCATT 57.148 47.619 3.68 0.00 46.50 3.16
1956 4237 3.589881 GAGGATGTGGCGCATGGC 61.590 66.667 19.78 4.63 38.06 4.40
2019 4300 4.835284 AAAGGAAAGAAAAACCAGGCAA 57.165 36.364 0.00 0.00 0.00 4.52
2066 4348 9.913310 ATAAGGAAGAAAGGATAGAAGGAAAAG 57.087 33.333 0.00 0.00 0.00 2.27
2314 4610 8.138712 TGACTTTAAAATAATGTTCGTGGCTTT 58.861 29.630 0.00 0.00 0.00 3.51
2358 4654 7.462109 TCAAGAATTTCCAAAAATGTTCGTG 57.538 32.000 0.00 0.00 35.27 4.35
2359 4655 7.547370 TGTTCAAGAATTTCCAAAAATGTTCGT 59.453 29.630 0.00 0.00 35.27 3.85
2397 4693 9.295825 TGTACAAGATTCCAGTAAATGTTCATT 57.704 29.630 0.00 0.00 0.00 2.57
2455 4751 8.218338 TGTTTGTGGATTAAAAACATTGCATT 57.782 26.923 0.00 0.00 38.51 3.56
2457 4753 7.798596 ATGTTTGTGGATTAAAAACATTGCA 57.201 28.000 8.67 0.00 46.91 4.08
2576 4873 7.708322 TCAAAACGGATTGTGAATCATGAAAAA 59.292 29.630 0.00 0.00 39.71 1.94
2582 4879 8.497554 CAAATTTCAAAACGGATTGTGAATCAT 58.502 29.630 0.00 0.00 39.71 2.45
2584 4881 8.071122 TCAAATTTCAAAACGGATTGTGAATC 57.929 30.769 0.00 0.00 37.17 2.52
2632 4929 9.863845 TCTGTTTTCGTTTTCCTTCTTTAAAAT 57.136 25.926 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.