Multiple sequence alignment - TraesCS3A01G376600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G376600 chr3A 100.000 3410 0 0 1 3410 625336024 625332615 0.000000e+00 6298.0
1 TraesCS3A01G376600 chr3A 87.692 195 24 0 6 200 107038501 107038307 9.520000e-56 228.0
2 TraesCS3A01G376600 chr3A 97.727 44 1 0 777 820 555677973 555678016 3.650000e-10 76.8
3 TraesCS3A01G376600 chr3D 92.422 1676 92 15 935 2587 482263225 482261562 0.000000e+00 2359.0
4 TraesCS3A01G376600 chr3D 94.198 1465 84 1 999 2463 482490613 482489150 0.000000e+00 2233.0
5 TraesCS3A01G376600 chr3D 91.474 1208 87 7 1251 2446 482345745 482344542 0.000000e+00 1646.0
6 TraesCS3A01G376600 chr3D 93.951 810 38 8 2605 3410 482261368 482260566 0.000000e+00 1214.0
7 TraesCS3A01G376600 chr3D 87.778 540 42 9 934 1461 482348598 482348071 8.090000e-171 610.0
8 TraesCS3A01G376600 chr3D 92.166 217 16 1 228 443 482491311 482491095 4.280000e-79 305.0
9 TraesCS3A01G376600 chr3D 87.817 197 22 2 1 196 545696022 545695827 2.650000e-56 230.0
10 TraesCS3A01G376600 chr3D 97.872 47 1 0 858 904 482490732 482490686 7.840000e-12 82.4
11 TraesCS3A01G376600 chr3D 96.000 50 1 1 901 950 482490656 482490608 2.820000e-11 80.5
12 TraesCS3A01G376600 chr3B 92.312 1665 105 13 935 2587 644543612 644541959 0.000000e+00 2344.0
13 TraesCS3A01G376600 chr3B 93.467 1546 93 5 902 2447 644814282 644812745 0.000000e+00 2289.0
14 TraesCS3A01G376600 chr3B 89.825 570 54 2 2841 3410 644538023 644537458 0.000000e+00 728.0
15 TraesCS3A01G376600 chr3B 92.391 184 14 0 260 443 644814560 644814377 2.610000e-66 263.0
16 TraesCS3A01G376600 chr3B 92.537 134 8 1 2608 2739 644541762 644541629 1.250000e-44 191.0
17 TraesCS3A01G376600 chr3B 87.786 131 8 4 2739 2869 644541305 644541183 2.740000e-31 147.0
18 TraesCS3A01G376600 chr5A 91.489 188 13 3 595 779 19220584 19220771 4.370000e-64 255.0
19 TraesCS3A01G376600 chr5A 89.286 196 16 4 595 787 569174319 569174126 1.220000e-59 241.0
20 TraesCS3A01G376600 chr5A 88.832 197 15 4 594 787 569989735 569989543 5.690000e-58 235.0
21 TraesCS3A01G376600 chr5A 87.192 203 23 2 1 200 275654695 275654897 9.520000e-56 228.0
22 TraesCS3A01G376600 chr5A 95.455 44 2 0 777 820 520377745 520377702 1.700000e-08 71.3
23 TraesCS3A01G376600 chr7A 88.889 207 16 5 588 789 723355851 723356055 7.310000e-62 248.0
24 TraesCS3A01G376600 chr7A 88.235 204 16 7 593 792 30808998 30808799 1.580000e-58 237.0
25 TraesCS3A01G376600 chr7A 93.421 152 8 2 446 595 24762284 24762435 1.230000e-54 224.0
26 TraesCS3A01G376600 chr7A 93.377 151 8 2 447 595 91742294 91742144 4.430000e-54 222.0
27 TraesCS3A01G376600 chr7A 100.000 28 0 0 2072 2099 19959327 19959300 6.000000e-03 52.8
28 TraesCS3A01G376600 chr1D 89.340 197 20 1 1 196 387058559 387058755 2.630000e-61 246.0
29 TraesCS3A01G376600 chr6A 89.691 194 14 5 594 784 234189758 234189568 3.400000e-60 243.0
30 TraesCS3A01G376600 chr1A 89.286 196 18 2 596 790 480567003 480567196 3.400000e-60 243.0
31 TraesCS3A01G376600 chr1A 89.000 200 16 6 586 781 521852791 521852594 3.400000e-60 243.0
32 TraesCS3A01G376600 chr4A 89.231 195 16 5 585 776 625794142 625794334 4.400000e-59 239.0
33 TraesCS3A01G376600 chr4A 89.610 154 14 1 444 595 168738577 168738424 9.660000e-46 195.0
34 TraesCS3A01G376600 chr5D 88.384 198 21 2 1 196 276713379 276713576 1.580000e-58 237.0
35 TraesCS3A01G376600 chr6D 87.940 199 21 2 1 196 402500751 402500949 7.360000e-57 231.0
36 TraesCS3A01G376600 chr6D 87.817 197 23 1 1 196 346275517 346275713 2.650000e-56 230.0
37 TraesCS3A01G376600 chr4D 87.817 197 23 1 1 196 37522680 37522484 2.650000e-56 230.0
38 TraesCS3A01G376600 chr4D 91.608 143 11 1 453 595 325541225 325541366 2.680000e-46 196.0
39 TraesCS3A01G376600 chr2B 87.817 197 23 1 1 196 71377135 71377331 2.650000e-56 230.0
40 TraesCS3A01G376600 chr2A 89.610 154 14 2 444 595 502325673 502325826 9.660000e-46 195.0
41 TraesCS3A01G376600 chr2A 89.744 156 11 4 444 595 705274356 705274510 9.660000e-46 195.0
42 TraesCS3A01G376600 chr2A 88.387 155 16 2 443 595 27936337 27936491 5.810000e-43 185.0
43 TraesCS3A01G376600 chr6B 90.909 143 13 0 453 595 67523370 67523228 3.470000e-45 193.0
44 TraesCS3A01G376600 chr4B 88.608 158 14 4 441 595 400851183 400851339 4.490000e-44 189.0
45 TraesCS3A01G376600 chr4B 95.652 46 2 0 777 822 42354271 42354226 1.310000e-09 75.0
46 TraesCS3A01G376600 chrUn 94.000 50 3 0 777 826 361244683 361244634 3.650000e-10 76.8
47 TraesCS3A01G376600 chrUn 94.000 50 3 0 777 826 369774038 369774087 3.650000e-10 76.8
48 TraesCS3A01G376600 chrUn 94.000 50 3 0 777 826 399317566 399317517 3.650000e-10 76.8
49 TraesCS3A01G376600 chrUn 94.000 50 3 0 777 826 400072416 400072367 3.650000e-10 76.8
50 TraesCS3A01G376600 chr5B 94.000 50 3 0 777 826 430246545 430246496 3.650000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G376600 chr3A 625332615 625336024 3409 True 6298.000 6298 100.0000 1 3410 1 chr3A.!!$R2 3409
1 TraesCS3A01G376600 chr3D 482260566 482263225 2659 True 1786.500 2359 93.1865 935 3410 2 chr3D.!!$R2 2475
2 TraesCS3A01G376600 chr3D 482344542 482348598 4056 True 1128.000 1646 89.6260 934 2446 2 chr3D.!!$R3 1512
3 TraesCS3A01G376600 chr3D 482489150 482491311 2161 True 675.225 2233 95.0590 228 2463 4 chr3D.!!$R4 2235
4 TraesCS3A01G376600 chr3B 644812745 644814560 1815 True 1276.000 2289 92.9290 260 2447 2 chr3B.!!$R2 2187
5 TraesCS3A01G376600 chr3B 644537458 644543612 6154 True 852.500 2344 90.6150 935 3410 4 chr3B.!!$R1 2475

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
489 491 0.029567 CGTCCACGTGCCTCTAGATC 59.970 60.000 10.91 0.00 34.11 2.75 F
959 1339 0.324614 TCGCAGCTGGGAAATCTTGA 59.675 50.000 29.22 5.73 33.89 3.02 F
2166 5112 1.078143 GTTCGAGCAGGGCCTCAAT 60.078 57.895 0.95 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2166 5112 0.770499 TGTCCACAAGATTCCTGGCA 59.230 50.000 0.0 0.00 0.00 4.92 R
2178 5124 1.070786 GCCGACCTTCTTGTCCACA 59.929 57.895 0.0 0.00 31.35 4.17 R
3308 9948 2.224621 ACTGGTTCATGACAGACCAAGG 60.225 50.000 16.6 9.93 38.09 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.267733 GGGGGTTGGTTTCTCCCA 58.732 61.111 0.00 0.00 42.71 4.37
18 19 1.228769 GGGGGTTGGTTTCTCCCAC 60.229 63.158 0.00 0.00 42.71 4.61
20 21 4.074647 GGTTGGTTTCTCCCACCG 57.925 61.111 0.00 0.00 41.27 4.94
21 22 1.452801 GGTTGGTTTCTCCCACCGA 59.547 57.895 0.00 0.00 41.27 4.69
22 23 0.887836 GGTTGGTTTCTCCCACCGAC 60.888 60.000 1.31 1.31 45.13 4.79
23 24 0.179040 GTTGGTTTCTCCCACCGACA 60.179 55.000 4.81 0.00 45.18 4.35
24 25 0.107831 TTGGTTTCTCCCACCGACAG 59.892 55.000 0.00 0.00 37.07 3.51
25 26 1.003718 GGTTTCTCCCACCGACAGG 60.004 63.158 0.00 0.00 45.13 4.00
26 27 1.671379 GTTTCTCCCACCGACAGGC 60.671 63.158 0.00 0.00 42.76 4.85
27 28 3.234630 TTTCTCCCACCGACAGGCG 62.235 63.158 0.00 0.00 42.76 5.52
43 44 2.606519 CGGACCAGGGGAGGACAA 60.607 66.667 0.00 0.00 0.00 3.18
44 45 2.660064 CGGACCAGGGGAGGACAAG 61.660 68.421 0.00 0.00 0.00 3.16
45 46 2.671682 GACCAGGGGAGGACAAGC 59.328 66.667 0.00 0.00 0.00 4.01
46 47 3.316573 GACCAGGGGAGGACAAGCG 62.317 68.421 0.00 0.00 0.00 4.68
47 48 4.785453 CCAGGGGAGGACAAGCGC 62.785 72.222 0.00 0.00 0.00 5.92
79 80 4.961511 TCCGCGCGCTGTCTGTTT 62.962 61.111 30.48 0.00 0.00 2.83
80 81 4.430423 CCGCGCGCTGTCTGTTTC 62.430 66.667 30.48 0.00 0.00 2.78
81 82 3.701530 CGCGCGCTGTCTGTTTCA 61.702 61.111 30.48 0.00 0.00 2.69
82 83 2.127609 GCGCGCTGTCTGTTTCAC 60.128 61.111 26.67 0.00 0.00 3.18
83 84 2.551270 CGCGCTGTCTGTTTCACC 59.449 61.111 5.56 0.00 0.00 4.02
84 85 2.946762 GCGCTGTCTGTTTCACCC 59.053 61.111 0.00 0.00 0.00 4.61
85 86 2.617274 GCGCTGTCTGTTTCACCCC 61.617 63.158 0.00 0.00 0.00 4.95
86 87 1.227823 CGCTGTCTGTTTCACCCCA 60.228 57.895 0.00 0.00 0.00 4.96
87 88 0.817634 CGCTGTCTGTTTCACCCCAA 60.818 55.000 0.00 0.00 0.00 4.12
88 89 1.398692 GCTGTCTGTTTCACCCCAAA 58.601 50.000 0.00 0.00 0.00 3.28
89 90 1.754226 GCTGTCTGTTTCACCCCAAAA 59.246 47.619 0.00 0.00 0.00 2.44
90 91 2.481276 GCTGTCTGTTTCACCCCAAAAC 60.481 50.000 0.00 0.00 37.18 2.43
91 92 2.100749 CTGTCTGTTTCACCCCAAAACC 59.899 50.000 0.00 0.00 36.09 3.27
92 93 1.066454 GTCTGTTTCACCCCAAAACCG 59.934 52.381 0.00 0.00 36.09 4.44
93 94 1.064611 TCTGTTTCACCCCAAAACCGA 60.065 47.619 0.00 0.00 36.09 4.69
94 95 1.066454 CTGTTTCACCCCAAAACCGAC 59.934 52.381 0.00 0.00 36.09 4.79
95 96 0.029700 GTTTCACCCCAAAACCGACG 59.970 55.000 0.00 0.00 31.80 5.12
96 97 0.394080 TTTCACCCCAAAACCGACGT 60.394 50.000 0.00 0.00 0.00 4.34
97 98 0.467384 TTCACCCCAAAACCGACGTA 59.533 50.000 0.00 0.00 0.00 3.57
98 99 0.467384 TCACCCCAAAACCGACGTAA 59.533 50.000 0.00 0.00 0.00 3.18
99 100 1.134280 TCACCCCAAAACCGACGTAAA 60.134 47.619 0.00 0.00 0.00 2.01
100 101 1.002576 CACCCCAAAACCGACGTAAAC 60.003 52.381 0.00 0.00 0.00 2.01
101 102 1.134128 ACCCCAAAACCGACGTAAACT 60.134 47.619 0.00 0.00 0.00 2.66
102 103 1.948834 CCCCAAAACCGACGTAAACTT 59.051 47.619 0.00 0.00 0.00 2.66
103 104 2.287129 CCCCAAAACCGACGTAAACTTG 60.287 50.000 0.00 0.00 0.00 3.16
104 105 2.287129 CCCAAAACCGACGTAAACTTGG 60.287 50.000 8.28 8.28 33.20 3.61
105 106 2.613133 CCAAAACCGACGTAAACTTGGA 59.387 45.455 9.24 0.00 34.97 3.53
106 107 3.546616 CCAAAACCGACGTAAACTTGGAC 60.547 47.826 9.24 0.00 34.97 4.02
107 108 1.869774 AACCGACGTAAACTTGGACC 58.130 50.000 0.00 0.00 0.00 4.46
108 109 0.752054 ACCGACGTAAACTTGGACCA 59.248 50.000 0.00 0.00 0.00 4.02
109 110 1.142474 CCGACGTAAACTTGGACCAC 58.858 55.000 0.00 0.00 0.00 4.16
110 111 0.780002 CGACGTAAACTTGGACCACG 59.220 55.000 0.00 0.00 38.52 4.94
111 112 1.142474 GACGTAAACTTGGACCACGG 58.858 55.000 2.65 0.00 36.95 4.94
112 113 0.752054 ACGTAAACTTGGACCACGGA 59.248 50.000 2.65 0.00 36.95 4.69
113 114 1.345415 ACGTAAACTTGGACCACGGAT 59.655 47.619 2.65 0.00 36.95 4.18
114 115 1.730064 CGTAAACTTGGACCACGGATG 59.270 52.381 2.65 0.00 0.00 3.51
123 124 4.201951 CCACGGATGGGTCGAAAG 57.798 61.111 0.00 0.00 43.04 2.62
124 125 2.106683 CCACGGATGGGTCGAAAGC 61.107 63.158 0.00 0.00 43.04 3.51
125 126 1.079127 CACGGATGGGTCGAAAGCT 60.079 57.895 0.00 0.00 0.00 3.74
126 127 1.079127 ACGGATGGGTCGAAAGCTG 60.079 57.895 0.00 0.00 0.00 4.24
127 128 1.218047 CGGATGGGTCGAAAGCTGA 59.782 57.895 0.00 0.00 0.00 4.26
128 129 1.084370 CGGATGGGTCGAAAGCTGAC 61.084 60.000 0.00 0.00 35.60 3.51
129 130 0.036388 GGATGGGTCGAAAGCTGACA 60.036 55.000 5.18 0.00 38.10 3.58
130 131 1.407437 GGATGGGTCGAAAGCTGACAT 60.407 52.381 5.18 0.00 38.10 3.06
131 132 1.667724 GATGGGTCGAAAGCTGACATG 59.332 52.381 5.18 0.00 38.10 3.21
132 133 0.684535 TGGGTCGAAAGCTGACATGA 59.315 50.000 0.00 0.00 38.10 3.07
133 134 1.071542 TGGGTCGAAAGCTGACATGAA 59.928 47.619 0.00 0.00 38.10 2.57
134 135 2.151202 GGGTCGAAAGCTGACATGAAA 58.849 47.619 0.00 0.00 38.10 2.69
135 136 2.095718 GGGTCGAAAGCTGACATGAAAC 60.096 50.000 0.00 0.00 38.10 2.78
136 137 2.548057 GGTCGAAAGCTGACATGAAACA 59.452 45.455 0.00 0.00 38.10 2.83
137 138 3.003275 GGTCGAAAGCTGACATGAAACAA 59.997 43.478 0.00 0.00 38.10 2.83
138 139 4.497340 GGTCGAAAGCTGACATGAAACAAA 60.497 41.667 0.00 0.00 38.10 2.83
139 140 4.437820 GTCGAAAGCTGACATGAAACAAAC 59.562 41.667 0.00 0.00 36.37 2.93
140 141 4.095632 TCGAAAGCTGACATGAAACAAACA 59.904 37.500 0.00 0.00 0.00 2.83
141 142 4.797868 CGAAAGCTGACATGAAACAAACAA 59.202 37.500 0.00 0.00 0.00 2.83
142 143 5.288232 CGAAAGCTGACATGAAACAAACAAA 59.712 36.000 0.00 0.00 0.00 2.83
143 144 6.019640 CGAAAGCTGACATGAAACAAACAAAT 60.020 34.615 0.00 0.00 0.00 2.32
144 145 7.167302 CGAAAGCTGACATGAAACAAACAAATA 59.833 33.333 0.00 0.00 0.00 1.40
145 146 8.891671 AAAGCTGACATGAAACAAACAAATAT 57.108 26.923 0.00 0.00 0.00 1.28
146 147 8.524870 AAGCTGACATGAAACAAACAAATATC 57.475 30.769 0.00 0.00 0.00 1.63
147 148 7.092716 AGCTGACATGAAACAAACAAATATCC 58.907 34.615 0.00 0.00 0.00 2.59
148 149 6.033831 GCTGACATGAAACAAACAAATATCCG 59.966 38.462 0.00 0.00 0.00 4.18
149 150 6.976088 TGACATGAAACAAACAAATATCCGT 58.024 32.000 0.00 0.00 0.00 4.69
150 151 7.429633 TGACATGAAACAAACAAATATCCGTT 58.570 30.769 0.00 0.00 0.00 4.44
151 152 7.923344 TGACATGAAACAAACAAATATCCGTTT 59.077 29.630 0.00 0.00 35.76 3.60
155 156 3.616444 CAAACAAATATCCGTTTGCGC 57.384 42.857 13.81 0.00 43.75 6.09
156 157 2.271821 AACAAATATCCGTTTGCGCC 57.728 45.000 4.18 0.00 41.61 6.53
157 158 0.454196 ACAAATATCCGTTTGCGCCC 59.546 50.000 4.18 0.00 41.61 6.13
158 159 0.591236 CAAATATCCGTTTGCGCCCG 60.591 55.000 4.18 4.36 36.67 6.13
159 160 2.331019 AAATATCCGTTTGCGCCCGC 62.331 55.000 4.18 5.60 42.35 6.13
175 176 2.809601 GCGCGTTGGACGTCTGAT 60.810 61.111 16.46 0.00 44.73 2.90
176 177 2.380410 GCGCGTTGGACGTCTGATT 61.380 57.895 16.46 0.00 44.73 2.57
177 178 1.897398 GCGCGTTGGACGTCTGATTT 61.897 55.000 16.46 0.00 44.73 2.17
178 179 1.342555 CGCGTTGGACGTCTGATTTA 58.657 50.000 16.46 0.00 44.73 1.40
179 180 1.924524 CGCGTTGGACGTCTGATTTAT 59.075 47.619 16.46 0.00 44.73 1.40
180 181 2.347452 CGCGTTGGACGTCTGATTTATT 59.653 45.455 16.46 0.00 44.73 1.40
181 182 3.541516 CGCGTTGGACGTCTGATTTATTC 60.542 47.826 16.46 0.00 44.73 1.75
182 183 3.541516 GCGTTGGACGTCTGATTTATTCG 60.542 47.826 16.46 8.57 44.73 3.34
183 184 3.611113 CGTTGGACGTCTGATTTATTCGT 59.389 43.478 16.46 0.00 36.74 3.85
184 185 4.090930 CGTTGGACGTCTGATTTATTCGTT 59.909 41.667 16.46 0.00 36.74 3.85
185 186 5.389098 CGTTGGACGTCTGATTTATTCGTTT 60.389 40.000 16.46 0.00 36.74 3.60
186 187 6.368213 GTTGGACGTCTGATTTATTCGTTTT 58.632 36.000 16.46 0.00 34.93 2.43
187 188 7.512297 GTTGGACGTCTGATTTATTCGTTTTA 58.488 34.615 16.46 0.00 34.93 1.52
188 189 7.052565 TGGACGTCTGATTTATTCGTTTTAC 57.947 36.000 16.46 0.00 34.93 2.01
189 190 6.091169 TGGACGTCTGATTTATTCGTTTTACC 59.909 38.462 16.46 0.00 34.93 2.85
190 191 6.413018 ACGTCTGATTTATTCGTTTTACCC 57.587 37.500 0.00 0.00 0.00 3.69
191 192 5.352293 ACGTCTGATTTATTCGTTTTACCCC 59.648 40.000 0.00 0.00 0.00 4.95
192 193 5.352016 CGTCTGATTTATTCGTTTTACCCCA 59.648 40.000 0.00 0.00 0.00 4.96
193 194 6.128227 CGTCTGATTTATTCGTTTTACCCCAA 60.128 38.462 0.00 0.00 0.00 4.12
194 195 7.573469 CGTCTGATTTATTCGTTTTACCCCAAA 60.573 37.037 0.00 0.00 0.00 3.28
195 196 7.539710 GTCTGATTTATTCGTTTTACCCCAAAC 59.460 37.037 0.00 0.00 33.90 2.93
196 197 7.230913 TCTGATTTATTCGTTTTACCCCAAACA 59.769 33.333 0.00 0.00 36.58 2.83
197 198 7.723324 TGATTTATTCGTTTTACCCCAAACAA 58.277 30.769 0.00 0.00 36.58 2.83
198 199 8.202137 TGATTTATTCGTTTTACCCCAAACAAA 58.798 29.630 0.00 0.00 36.58 2.83
199 200 7.767745 TTTATTCGTTTTACCCCAAACAAAC 57.232 32.000 0.00 0.00 36.58 2.93
200 201 4.796038 TTCGTTTTACCCCAAACAAACA 57.204 36.364 0.00 0.00 36.58 2.83
201 202 4.796038 TCGTTTTACCCCAAACAAACAA 57.204 36.364 0.00 0.00 36.58 2.83
202 203 4.745649 TCGTTTTACCCCAAACAAACAAG 58.254 39.130 0.00 0.00 36.58 3.16
203 204 4.461781 TCGTTTTACCCCAAACAAACAAGA 59.538 37.500 0.00 0.00 36.58 3.02
204 205 5.127356 TCGTTTTACCCCAAACAAACAAGAT 59.873 36.000 0.00 0.00 36.58 2.40
205 206 6.320672 TCGTTTTACCCCAAACAAACAAGATA 59.679 34.615 0.00 0.00 36.58 1.98
206 207 6.639279 CGTTTTACCCCAAACAAACAAGATAG 59.361 38.462 0.00 0.00 36.58 2.08
207 208 6.658188 TTTACCCCAAACAAACAAGATAGG 57.342 37.500 0.00 0.00 0.00 2.57
208 209 3.506398 ACCCCAAACAAACAAGATAGGG 58.494 45.455 0.00 0.00 38.04 3.53
209 210 3.116900 ACCCCAAACAAACAAGATAGGGT 60.117 43.478 0.00 0.00 40.45 4.34
210 211 3.901222 CCCCAAACAAACAAGATAGGGTT 59.099 43.478 0.00 0.00 33.14 4.11
211 212 4.262420 CCCCAAACAAACAAGATAGGGTTG 60.262 45.833 0.00 0.00 33.14 3.77
212 213 4.306600 CCAAACAAACAAGATAGGGTTGC 58.693 43.478 0.00 0.00 0.00 4.17
213 214 3.915437 AACAAACAAGATAGGGTTGCG 57.085 42.857 0.00 0.00 0.00 4.85
214 215 1.539827 ACAAACAAGATAGGGTTGCGC 59.460 47.619 0.00 0.00 0.00 6.09
215 216 0.802494 AAACAAGATAGGGTTGCGCG 59.198 50.000 0.00 0.00 0.00 6.86
216 217 1.024579 AACAAGATAGGGTTGCGCGG 61.025 55.000 8.83 0.00 0.00 6.46
217 218 1.449601 CAAGATAGGGTTGCGCGGT 60.450 57.895 8.83 0.00 0.00 5.68
218 219 1.449601 AAGATAGGGTTGCGCGGTG 60.450 57.895 8.83 0.00 0.00 4.94
219 220 2.869503 AAGATAGGGTTGCGCGGTGG 62.870 60.000 8.83 0.00 0.00 4.61
220 221 4.483243 ATAGGGTTGCGCGGTGGG 62.483 66.667 8.83 0.00 0.00 4.61
225 226 2.979120 GTTGCGCGGTGGGGTTAA 60.979 61.111 8.83 0.00 0.00 2.01
226 227 2.979120 TTGCGCGGTGGGGTTAAC 60.979 61.111 8.83 0.00 0.00 2.01
238 239 3.328637 GTGGGGTTAACCTAACTTCCTGA 59.671 47.826 23.69 0.00 40.03 3.86
246 247 1.136305 CCTAACTTCCTGAATCGCGGA 59.864 52.381 6.13 0.00 0.00 5.54
249 250 0.173708 ACTTCCTGAATCGCGGAGTC 59.826 55.000 6.13 2.42 0.00 3.36
331 333 3.530104 GTAGCCGTCGACGCAACG 61.530 66.667 31.73 19.01 39.78 4.10
345 347 4.035102 AACGGGAAGGAGCCAGCC 62.035 66.667 0.00 0.00 0.00 4.85
371 373 2.565868 GCACTTGCACAAACGACAC 58.434 52.632 0.00 0.00 41.59 3.67
405 407 4.097437 TCACGCAGATTTACTACCTACCTG 59.903 45.833 0.00 0.00 0.00 4.00
411 413 6.407202 CAGATTTACTACCTACCTGCAAGTT 58.593 40.000 0.00 0.00 0.00 2.66
433 435 4.101790 GAATGGCGGCACACCACG 62.102 66.667 16.34 0.00 46.46 4.94
443 445 0.515564 GCACACCACGCTAACGAAAT 59.484 50.000 0.00 0.00 43.93 2.17
445 447 2.158058 GCACACCACGCTAACGAAATAA 59.842 45.455 0.00 0.00 43.93 1.40
446 448 3.181514 GCACACCACGCTAACGAAATAAT 60.182 43.478 0.00 0.00 43.93 1.28
447 449 4.033129 GCACACCACGCTAACGAAATAATA 59.967 41.667 0.00 0.00 43.93 0.98
448 450 5.486706 CACACCACGCTAACGAAATAATAC 58.513 41.667 0.00 0.00 43.93 1.89
450 452 6.473131 CACACCACGCTAACGAAATAATACTA 59.527 38.462 0.00 0.00 43.93 1.82
452 454 5.979517 ACCACGCTAACGAAATAATACTACC 59.020 40.000 0.00 0.00 43.93 3.18
453 455 6.183360 ACCACGCTAACGAAATAATACTACCT 60.183 38.462 0.00 0.00 43.93 3.08
454 456 6.361748 CCACGCTAACGAAATAATACTACCTC 59.638 42.308 0.00 0.00 43.93 3.85
455 457 7.137426 CACGCTAACGAAATAATACTACCTCT 58.863 38.462 0.00 0.00 43.93 3.69
456 458 7.323177 CACGCTAACGAAATAATACTACCTCTC 59.677 40.741 0.00 0.00 43.93 3.20
457 459 7.228308 ACGCTAACGAAATAATACTACCTCTCT 59.772 37.037 0.00 0.00 43.93 3.10
458 460 7.745594 CGCTAACGAAATAATACTACCTCTCTC 59.254 40.741 0.00 0.00 43.93 3.20
459 461 8.566260 GCTAACGAAATAATACTACCTCTCTCA 58.434 37.037 0.00 0.00 0.00 3.27
461 463 8.522542 AACGAAATAATACTACCTCTCTCAGT 57.477 34.615 0.00 0.00 0.00 3.41
462 464 8.522542 ACGAAATAATACTACCTCTCTCAGTT 57.477 34.615 0.00 0.00 0.00 3.16
463 465 8.968969 ACGAAATAATACTACCTCTCTCAGTTT 58.031 33.333 0.00 0.00 0.00 2.66
468 470 7.648039 AATACTACCTCTCTCAGTTTACAGG 57.352 40.000 0.00 0.00 0.00 4.00
469 471 4.345854 ACTACCTCTCTCAGTTTACAGGG 58.654 47.826 0.00 0.00 0.00 4.45
470 472 1.903183 ACCTCTCTCAGTTTACAGGGC 59.097 52.381 0.00 0.00 0.00 5.19
471 473 1.134965 CCTCTCTCAGTTTACAGGGCG 60.135 57.143 0.00 0.00 0.00 6.13
472 474 1.546476 CTCTCTCAGTTTACAGGGCGT 59.454 52.381 0.00 0.00 0.00 5.68
473 475 1.544691 TCTCTCAGTTTACAGGGCGTC 59.455 52.381 0.00 0.00 0.00 5.19
474 476 0.606604 TCTCAGTTTACAGGGCGTCC 59.393 55.000 0.00 0.00 0.00 4.79
475 477 0.320374 CTCAGTTTACAGGGCGTCCA 59.680 55.000 9.71 0.00 34.83 4.02
476 478 0.034337 TCAGTTTACAGGGCGTCCAC 59.966 55.000 9.71 0.00 34.83 4.02
477 479 1.005394 AGTTTACAGGGCGTCCACG 60.005 57.895 9.71 0.06 43.27 4.94
478 480 1.301165 GTTTACAGGGCGTCCACGT 60.301 57.895 9.71 7.74 42.22 4.49
479 481 1.301087 TTTACAGGGCGTCCACGTG 60.301 57.895 9.71 9.08 42.22 4.49
480 482 3.869473 TTACAGGGCGTCCACGTGC 62.869 63.158 9.71 0.00 42.22 5.34
486 488 2.202623 GCGTCCACGTGCCTCTAG 60.203 66.667 10.91 0.00 42.22 2.43
487 489 2.697761 GCGTCCACGTGCCTCTAGA 61.698 63.158 10.91 0.00 42.22 2.43
488 490 2.005960 GCGTCCACGTGCCTCTAGAT 62.006 60.000 10.91 0.00 42.22 1.98
489 491 0.029567 CGTCCACGTGCCTCTAGATC 59.970 60.000 10.91 0.00 34.11 2.75
490 492 1.103803 GTCCACGTGCCTCTAGATCA 58.896 55.000 10.91 0.00 0.00 2.92
491 493 1.683917 GTCCACGTGCCTCTAGATCAT 59.316 52.381 10.91 0.00 0.00 2.45
492 494 2.101582 GTCCACGTGCCTCTAGATCATT 59.898 50.000 10.91 0.00 0.00 2.57
493 495 3.318275 GTCCACGTGCCTCTAGATCATTA 59.682 47.826 10.91 0.00 0.00 1.90
494 496 3.958147 TCCACGTGCCTCTAGATCATTAA 59.042 43.478 10.91 0.00 0.00 1.40
495 497 4.588951 TCCACGTGCCTCTAGATCATTAAT 59.411 41.667 10.91 0.00 0.00 1.40
496 498 5.070446 TCCACGTGCCTCTAGATCATTAATT 59.930 40.000 10.91 0.00 0.00 1.40
497 499 5.760253 CCACGTGCCTCTAGATCATTAATTT 59.240 40.000 10.91 0.00 0.00 1.82
498 500 6.293081 CCACGTGCCTCTAGATCATTAATTTG 60.293 42.308 10.91 0.00 0.00 2.32
499 501 6.479990 CACGTGCCTCTAGATCATTAATTTGA 59.520 38.462 0.82 0.00 0.00 2.69
500 502 6.480320 ACGTGCCTCTAGATCATTAATTTGAC 59.520 38.462 0.00 0.00 0.00 3.18
501 503 6.073548 CGTGCCTCTAGATCATTAATTTGACC 60.074 42.308 0.00 0.00 0.00 4.02
502 504 6.767902 GTGCCTCTAGATCATTAATTTGACCA 59.232 38.462 0.00 0.00 0.00 4.02
503 505 7.283127 GTGCCTCTAGATCATTAATTTGACCAA 59.717 37.037 0.00 0.00 0.00 3.67
504 506 7.283127 TGCCTCTAGATCATTAATTTGACCAAC 59.717 37.037 0.00 0.00 0.00 3.77
505 507 7.255277 GCCTCTAGATCATTAATTTGACCAACC 60.255 40.741 0.00 0.00 0.00 3.77
506 508 7.995488 CCTCTAGATCATTAATTTGACCAACCT 59.005 37.037 0.00 0.00 0.00 3.50
569 571 8.887036 AACTTCAGATGTTTTATTTCCAAACC 57.113 30.769 0.00 0.00 33.83 3.27
570 572 7.145323 ACTTCAGATGTTTTATTTCCAAACCG 58.855 34.615 0.00 0.00 33.83 4.44
571 573 6.642707 TCAGATGTTTTATTTCCAAACCGT 57.357 33.333 0.00 0.00 33.83 4.83
572 574 7.747155 TCAGATGTTTTATTTCCAAACCGTA 57.253 32.000 0.00 0.00 33.83 4.02
573 575 8.343168 TCAGATGTTTTATTTCCAAACCGTAT 57.657 30.769 0.00 0.00 33.83 3.06
574 576 9.451002 TCAGATGTTTTATTTCCAAACCGTATA 57.549 29.630 0.00 0.00 33.83 1.47
608 610 8.647796 TGTTATATAGTTTGGATGTGTCTAGGG 58.352 37.037 0.00 0.00 0.00 3.53
609 611 2.789409 AGTTTGGATGTGTCTAGGGC 57.211 50.000 0.00 0.00 0.00 5.19
610 612 1.985159 AGTTTGGATGTGTCTAGGGCA 59.015 47.619 0.00 0.00 0.00 5.36
611 613 2.084546 GTTTGGATGTGTCTAGGGCAC 58.915 52.381 10.20 10.20 37.37 5.01
618 620 3.382083 TGTGTCTAGGGCACATCTAGA 57.618 47.619 14.22 0.00 41.32 2.43
619 621 3.916035 TGTGTCTAGGGCACATCTAGAT 58.084 45.455 14.22 0.00 43.25 1.98
620 622 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
653 655 8.700051 AGTTATTGCATATCTAAGTGAGTGAGT 58.300 33.333 0.00 0.00 0.00 3.41
654 656 8.973378 GTTATTGCATATCTAAGTGAGTGAGTC 58.027 37.037 0.00 0.00 0.00 3.36
655 657 6.530019 TTGCATATCTAAGTGAGTGAGTCA 57.470 37.500 0.00 0.00 0.00 3.41
656 658 6.530019 TGCATATCTAAGTGAGTGAGTCAA 57.470 37.500 0.00 0.00 36.74 3.18
657 659 6.935167 TGCATATCTAAGTGAGTGAGTCAAA 58.065 36.000 0.00 0.00 36.74 2.69
658 660 6.813649 TGCATATCTAAGTGAGTGAGTCAAAC 59.186 38.462 0.00 0.00 36.74 2.93
659 661 6.813649 GCATATCTAAGTGAGTGAGTCAAACA 59.186 38.462 0.00 0.00 36.74 2.83
660 662 7.493971 GCATATCTAAGTGAGTGAGTCAAACAT 59.506 37.037 0.00 0.00 36.74 2.71
664 666 8.818141 TCTAAGTGAGTGAGTCAAACATAAAG 57.182 34.615 0.00 0.00 36.74 1.85
665 667 8.638873 TCTAAGTGAGTGAGTCAAACATAAAGA 58.361 33.333 0.00 0.77 36.74 2.52
666 668 7.721286 AAGTGAGTGAGTCAAACATAAAGAG 57.279 36.000 0.00 0.00 36.74 2.85
667 669 6.226787 AGTGAGTGAGTCAAACATAAAGAGG 58.773 40.000 0.00 0.00 36.74 3.69
668 670 6.042093 AGTGAGTGAGTCAAACATAAAGAGGA 59.958 38.462 0.00 0.00 36.74 3.71
669 671 6.706270 GTGAGTGAGTCAAACATAAAGAGGAA 59.294 38.462 0.00 0.00 36.74 3.36
670 672 7.226720 GTGAGTGAGTCAAACATAAAGAGGAAA 59.773 37.037 0.00 0.00 36.74 3.13
671 673 7.773224 TGAGTGAGTCAAACATAAAGAGGAAAA 59.227 33.333 0.00 0.00 29.64 2.29
672 674 8.519799 AGTGAGTCAAACATAAAGAGGAAAAA 57.480 30.769 0.00 0.00 0.00 1.94
698 700 9.883142 AAAAGAAAAGAAAAATATCCACACACA 57.117 25.926 0.00 0.00 0.00 3.72
700 702 9.696917 AAGAAAAGAAAAATATCCACACACATC 57.303 29.630 0.00 0.00 0.00 3.06
701 703 9.082313 AGAAAAGAAAAATATCCACACACATCT 57.918 29.630 0.00 0.00 0.00 2.90
702 704 9.346725 GAAAAGAAAAATATCCACACACATCTC 57.653 33.333 0.00 0.00 0.00 2.75
703 705 6.668541 AGAAAAATATCCACACACATCTCG 57.331 37.500 0.00 0.00 0.00 4.04
704 706 6.406370 AGAAAAATATCCACACACATCTCGA 58.594 36.000 0.00 0.00 0.00 4.04
705 707 6.313905 AGAAAAATATCCACACACATCTCGAC 59.686 38.462 0.00 0.00 0.00 4.20
706 708 2.844122 TATCCACACACATCTCGACG 57.156 50.000 0.00 0.00 0.00 5.12
707 709 0.888619 ATCCACACACATCTCGACGT 59.111 50.000 0.00 0.00 0.00 4.34
708 710 1.525941 TCCACACACATCTCGACGTA 58.474 50.000 0.00 0.00 0.00 3.57
709 711 1.881324 TCCACACACATCTCGACGTAA 59.119 47.619 0.00 0.00 0.00 3.18
711 713 2.095415 CCACACACATCTCGACGTAAGA 60.095 50.000 2.87 2.87 43.62 2.10
712 714 3.427638 CCACACACATCTCGACGTAAGAT 60.428 47.826 7.03 7.03 43.62 2.40
713 715 3.786576 CACACACATCTCGACGTAAGATC 59.213 47.826 9.40 0.00 43.62 2.75
714 716 3.439129 ACACACATCTCGACGTAAGATCA 59.561 43.478 9.40 0.00 43.62 2.92
715 717 4.082949 ACACACATCTCGACGTAAGATCAA 60.083 41.667 9.40 0.00 43.62 2.57
716 718 5.037385 CACACATCTCGACGTAAGATCAAT 58.963 41.667 9.40 0.00 43.62 2.57
717 719 6.183360 ACACACATCTCGACGTAAGATCAATA 60.183 38.462 9.40 0.00 43.62 1.90
718 720 6.691388 CACACATCTCGACGTAAGATCAATAA 59.309 38.462 9.40 0.00 43.62 1.40
719 721 6.691818 ACACATCTCGACGTAAGATCAATAAC 59.308 38.462 9.40 0.00 43.62 1.89
720 722 6.691388 CACATCTCGACGTAAGATCAATAACA 59.309 38.462 9.40 0.00 43.62 2.41
721 723 7.379797 CACATCTCGACGTAAGATCAATAACAT 59.620 37.037 9.40 0.00 43.62 2.71
722 724 8.565416 ACATCTCGACGTAAGATCAATAACATA 58.435 33.333 9.40 0.00 43.62 2.29
723 725 9.056306 CATCTCGACGTAAGATCAATAACATAG 57.944 37.037 9.40 0.00 43.62 2.23
724 726 8.374327 TCTCGACGTAAGATCAATAACATAGA 57.626 34.615 0.00 0.00 43.62 1.98
725 727 8.833493 TCTCGACGTAAGATCAATAACATAGAA 58.167 33.333 0.00 0.00 43.62 2.10
726 728 8.778141 TCGACGTAAGATCAATAACATAGAAC 57.222 34.615 0.00 0.00 43.62 3.01
727 729 8.618677 TCGACGTAAGATCAATAACATAGAACT 58.381 33.333 0.00 0.00 43.62 3.01
728 730 9.234384 CGACGTAAGATCAATAACATAGAACTT 57.766 33.333 0.00 0.00 43.62 2.66
748 750 9.442047 AGAACTTAGATATGCAATACTTATGGC 57.558 33.333 0.00 0.00 33.16 4.40
749 751 9.219603 GAACTTAGATATGCAATACTTATGGCA 57.780 33.333 0.69 0.69 45.92 4.92
750 752 8.553459 ACTTAGATATGCAATACTTATGGCAC 57.447 34.615 0.16 0.00 44.77 5.01
751 753 8.156820 ACTTAGATATGCAATACTTATGGCACA 58.843 33.333 0.16 0.00 44.77 4.57
752 754 9.170734 CTTAGATATGCAATACTTATGGCACAT 57.829 33.333 0.16 0.00 44.77 3.21
753 755 7.621428 AGATATGCAATACTTATGGCACATC 57.379 36.000 8.33 8.33 44.77 3.06
754 756 7.400439 AGATATGCAATACTTATGGCACATCT 58.600 34.615 11.99 11.99 46.66 2.90
755 757 8.722480 GATATGCAATACTTATGGCACATCTA 57.278 34.615 8.94 0.00 44.77 1.98
756 758 8.728337 ATATGCAATACTTATGGCACATCTAG 57.272 34.615 0.16 0.00 44.77 2.43
757 759 6.772605 ATGCAATACTTATGGCACATCTAGA 58.227 36.000 0.16 0.00 44.77 2.43
758 760 7.400439 ATGCAATACTTATGGCACATCTAGAT 58.600 34.615 0.00 0.00 44.77 1.98
759 761 7.336176 ATGCAATACTTATGGCACATCTAGATG 59.664 37.037 27.63 27.63 44.77 2.90
814 816 7.881775 AAGCTGATAAAATTGGTAACCTAGG 57.118 36.000 7.41 7.41 0.00 3.02
815 817 6.970191 AGCTGATAAAATTGGTAACCTAGGT 58.030 36.000 9.21 9.21 0.00 3.08
816 818 8.097791 AGCTGATAAAATTGGTAACCTAGGTA 57.902 34.615 16.67 0.00 0.00 3.08
817 819 8.724310 AGCTGATAAAATTGGTAACCTAGGTAT 58.276 33.333 16.67 8.29 0.00 2.73
826 828 9.443365 AATTGGTAACCTAGGTATACACATAGT 57.557 33.333 16.67 0.00 37.34 2.12
828 830 9.934784 TTGGTAACCTAGGTATACACATAGTAA 57.065 33.333 16.67 0.00 37.34 2.24
856 858 6.366315 AGACATACAAAAAGTTACACGCAA 57.634 33.333 0.00 0.00 0.00 4.85
894 1241 3.069443 TGGCTTTCCCAAAACATCAAGAC 59.931 43.478 0.00 0.00 41.82 3.01
899 1279 3.138304 TCCCAAAACATCAAGACGACTG 58.862 45.455 0.00 0.00 0.00 3.51
956 1336 0.835941 ATCTCGCAGCTGGGAAATCT 59.164 50.000 30.43 14.62 36.54 2.40
959 1339 0.324614 TCGCAGCTGGGAAATCTTGA 59.675 50.000 29.22 5.73 33.89 3.02
989 1369 2.911819 TTGCCGAAGCTTAATTTCCG 57.088 45.000 0.00 0.00 40.80 4.30
997 1377 2.711542 AGCTTAATTTCCGGACACCTG 58.288 47.619 1.83 0.00 0.00 4.00
1329 4257 3.893763 GAGCTCTCGCGGCTGCTA 61.894 66.667 17.03 3.19 40.40 3.49
1330 4258 3.822403 GAGCTCTCGCGGCTGCTAG 62.822 68.421 17.03 14.78 40.40 3.42
1874 4814 1.153667 GGAGCGAGGTGAAGCTGAG 60.154 63.158 0.00 0.00 44.69 3.35
1899 4839 3.869272 CAGCTGCAACGGATCGCC 61.869 66.667 0.00 0.00 0.00 5.54
1905 4845 4.891727 CAACGGATCGCCCTCGGG 62.892 72.222 0.00 0.00 36.13 5.14
2166 5112 1.078143 GTTCGAGCAGGGCCTCAAT 60.078 57.895 0.95 0.00 0.00 2.57
2178 5124 1.772836 GCCTCAATGCCAGGAATCTT 58.227 50.000 0.00 0.00 31.91 2.40
2316 5262 1.562672 GGGCCAAGGTGAAGGAGCTA 61.563 60.000 4.39 0.00 0.00 3.32
2352 5298 2.492088 AGACGACGAGGTGAATGATCAA 59.508 45.455 0.00 0.00 37.30 2.57
2411 5357 4.082026 CAGCAAAAAGAACCAAGGATAGGG 60.082 45.833 0.00 0.00 0.00 3.53
2427 5373 6.019108 AGGATAGGGCTGAAACTTTCAAATT 58.981 36.000 5.72 0.00 39.58 1.82
2467 5413 2.421073 TGAAGTGAAGCATGCTACATGC 59.579 45.455 23.00 21.83 44.85 4.06
2476 5422 2.223548 GCATGCTACATGCGATTTCCAA 60.224 45.455 15.98 0.00 46.63 3.53
2479 5425 3.832276 TGCTACATGCGATTTCCAAAAC 58.168 40.909 0.00 0.00 46.63 2.43
2529 5478 3.418684 AAACCGTGCTACTCCTTTGAT 57.581 42.857 0.00 0.00 0.00 2.57
2559 5509 0.179001 AACAAGGGGGTGTGTAGTGC 60.179 55.000 0.00 0.00 0.00 4.40
2671 5797 4.954933 GCCACGGCATCCTTCTTA 57.045 55.556 2.36 0.00 41.49 2.10
2682 5809 3.437049 GCATCCTTCTTACCAAGTGACAC 59.563 47.826 0.00 0.00 0.00 3.67
2683 5810 4.641396 CATCCTTCTTACCAAGTGACACA 58.359 43.478 8.59 0.00 0.00 3.72
2684 5811 4.764050 TCCTTCTTACCAAGTGACACAA 57.236 40.909 8.59 0.00 0.00 3.33
2859 6312 4.584327 ACTTTCTAAAACCACATGTGCC 57.416 40.909 20.81 0.00 0.00 5.01
2869 9509 6.952773 AAACCACATGTGCCGTAATATATT 57.047 33.333 20.81 2.97 0.00 1.28
2902 9542 8.530804 AGGTACTATACTACTAACCAACCTTG 57.469 38.462 0.00 0.00 36.02 3.61
2943 9583 4.273235 TGGTAAATGCTATGAACGCATCAG 59.727 41.667 0.00 0.00 46.62 2.90
2965 9605 3.489229 GGTGGAACTTCAACAGCAGAAAC 60.489 47.826 0.00 0.00 36.74 2.78
3011 9651 4.083643 GGAATGTCAATGATATCACCAGCG 60.084 45.833 7.78 0.00 0.00 5.18
3025 9665 4.992688 TCACCAGCGGCAAAAATATTAAG 58.007 39.130 1.45 0.00 0.00 1.85
3048 9688 5.045578 AGCTGGCCTTTCACTCTTAGATTTA 60.046 40.000 3.32 0.00 0.00 1.40
3222 9862 3.748568 TGACATGGACTCTAGATCGATCG 59.251 47.826 19.33 9.36 0.00 3.69
3308 9948 4.647424 TTGACCAACAGATTCCAACAAC 57.353 40.909 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.228769 GTGGGAGAAACCAACCCCC 60.229 63.158 0.00 0.00 43.34 5.40
1 2 4.513777 GTGGGAGAAACCAACCCC 57.486 61.111 0.00 0.00 43.34 4.95
4 5 0.179040 TGTCGGTGGGAGAAACCAAC 60.179 55.000 0.00 0.00 44.95 3.77
5 6 0.107831 CTGTCGGTGGGAGAAACCAA 59.892 55.000 0.00 0.00 43.34 3.67
6 7 1.752198 CTGTCGGTGGGAGAAACCA 59.248 57.895 0.00 0.00 41.20 3.67
7 8 1.003718 CCTGTCGGTGGGAGAAACC 60.004 63.158 0.00 0.00 38.08 3.27
8 9 1.671379 GCCTGTCGGTGGGAGAAAC 60.671 63.158 0.00 0.00 0.00 2.78
9 10 2.747686 GCCTGTCGGTGGGAGAAA 59.252 61.111 0.00 0.00 0.00 2.52
10 11 3.691342 CGCCTGTCGGTGGGAGAA 61.691 66.667 0.00 0.00 37.15 2.87
26 27 2.606519 TTGTCCTCCCCTGGTCCG 60.607 66.667 0.00 0.00 0.00 4.79
27 28 2.972819 GCTTGTCCTCCCCTGGTCC 61.973 68.421 0.00 0.00 0.00 4.46
28 29 2.671682 GCTTGTCCTCCCCTGGTC 59.328 66.667 0.00 0.00 0.00 4.02
29 30 3.322466 CGCTTGTCCTCCCCTGGT 61.322 66.667 0.00 0.00 0.00 4.00
30 31 4.785453 GCGCTTGTCCTCCCCTGG 62.785 72.222 0.00 0.00 0.00 4.45
62 63 4.961511 AAACAGACAGCGCGCGGA 62.962 61.111 36.82 0.00 0.00 5.54
63 64 4.430423 GAAACAGACAGCGCGCGG 62.430 66.667 33.06 29.37 0.00 6.46
64 65 3.701530 TGAAACAGACAGCGCGCG 61.702 61.111 28.44 28.44 0.00 6.86
65 66 2.127609 GTGAAACAGACAGCGCGC 60.128 61.111 26.66 26.66 36.32 6.86
66 67 2.551270 GGTGAAACAGACAGCGCG 59.449 61.111 0.00 0.00 39.98 6.86
67 68 2.617274 GGGGTGAAACAGACAGCGC 61.617 63.158 0.00 0.00 39.98 5.92
68 69 0.817634 TTGGGGTGAAACAGACAGCG 60.818 55.000 0.00 0.00 39.98 5.18
69 70 1.398692 TTTGGGGTGAAACAGACAGC 58.601 50.000 0.00 0.00 39.98 4.40
70 71 2.100749 GGTTTTGGGGTGAAACAGACAG 59.899 50.000 2.65 0.00 39.98 3.51
71 72 2.104170 GGTTTTGGGGTGAAACAGACA 58.896 47.619 2.65 0.00 39.98 3.41
72 73 1.066454 CGGTTTTGGGGTGAAACAGAC 59.934 52.381 2.65 0.00 39.98 3.51
73 74 1.064611 TCGGTTTTGGGGTGAAACAGA 60.065 47.619 2.65 1.19 39.98 3.41
74 75 1.066454 GTCGGTTTTGGGGTGAAACAG 59.934 52.381 2.65 0.00 39.98 3.16
75 76 1.104630 GTCGGTTTTGGGGTGAAACA 58.895 50.000 2.65 0.00 39.98 2.83
76 77 0.029700 CGTCGGTTTTGGGGTGAAAC 59.970 55.000 0.00 0.00 36.51 2.78
77 78 0.394080 ACGTCGGTTTTGGGGTGAAA 60.394 50.000 0.00 0.00 0.00 2.69
78 79 0.467384 TACGTCGGTTTTGGGGTGAA 59.533 50.000 0.00 0.00 0.00 3.18
79 80 0.467384 TTACGTCGGTTTTGGGGTGA 59.533 50.000 0.00 0.00 0.00 4.02
80 81 1.002576 GTTTACGTCGGTTTTGGGGTG 60.003 52.381 0.00 0.00 0.00 4.61
81 82 1.134128 AGTTTACGTCGGTTTTGGGGT 60.134 47.619 0.00 0.00 0.00 4.95
82 83 1.596603 AGTTTACGTCGGTTTTGGGG 58.403 50.000 0.00 0.00 0.00 4.96
83 84 2.287129 CCAAGTTTACGTCGGTTTTGGG 60.287 50.000 0.00 0.00 32.09 4.12
84 85 2.613133 TCCAAGTTTACGTCGGTTTTGG 59.387 45.455 0.00 1.63 35.95 3.28
85 86 3.546616 GGTCCAAGTTTACGTCGGTTTTG 60.547 47.826 0.00 0.00 0.00 2.44
86 87 2.613595 GGTCCAAGTTTACGTCGGTTTT 59.386 45.455 0.00 0.00 0.00 2.43
87 88 2.212652 GGTCCAAGTTTACGTCGGTTT 58.787 47.619 0.00 0.00 0.00 3.27
88 89 1.138661 TGGTCCAAGTTTACGTCGGTT 59.861 47.619 0.00 0.00 0.00 4.44
89 90 0.752054 TGGTCCAAGTTTACGTCGGT 59.248 50.000 0.00 0.00 0.00 4.69
90 91 1.142474 GTGGTCCAAGTTTACGTCGG 58.858 55.000 0.00 0.00 0.00 4.79
91 92 0.780002 CGTGGTCCAAGTTTACGTCG 59.220 55.000 0.00 0.00 0.00 5.12
92 93 1.142474 CCGTGGTCCAAGTTTACGTC 58.858 55.000 4.00 0.00 33.28 4.34
93 94 0.752054 TCCGTGGTCCAAGTTTACGT 59.248 50.000 4.00 0.00 33.28 3.57
94 95 1.730064 CATCCGTGGTCCAAGTTTACG 59.270 52.381 4.00 0.00 34.78 3.18
95 96 2.081462 CCATCCGTGGTCCAAGTTTAC 58.919 52.381 4.00 0.00 40.83 2.01
96 97 1.003812 CCCATCCGTGGTCCAAGTTTA 59.996 52.381 4.00 0.00 44.48 2.01
97 98 0.251165 CCCATCCGTGGTCCAAGTTT 60.251 55.000 4.00 0.00 44.48 2.66
98 99 1.378762 CCCATCCGTGGTCCAAGTT 59.621 57.895 4.00 0.00 44.48 2.66
99 100 1.838073 GACCCATCCGTGGTCCAAGT 61.838 60.000 4.00 0.00 45.38 3.16
100 101 1.078426 GACCCATCCGTGGTCCAAG 60.078 63.158 0.00 0.00 45.38 3.61
101 102 3.074281 GACCCATCCGTGGTCCAA 58.926 61.111 0.00 0.00 45.38 3.53
105 106 1.295423 CTTTCGACCCATCCGTGGT 59.705 57.895 0.00 0.00 44.48 4.16
106 107 2.106683 GCTTTCGACCCATCCGTGG 61.107 63.158 0.00 0.00 45.61 4.94
107 108 1.079127 AGCTTTCGACCCATCCGTG 60.079 57.895 0.00 0.00 0.00 4.94
108 109 1.079127 CAGCTTTCGACCCATCCGT 60.079 57.895 0.00 0.00 0.00 4.69
109 110 1.084370 GTCAGCTTTCGACCCATCCG 61.084 60.000 0.00 0.00 0.00 4.18
110 111 0.036388 TGTCAGCTTTCGACCCATCC 60.036 55.000 0.62 0.00 32.15 3.51
111 112 1.667724 CATGTCAGCTTTCGACCCATC 59.332 52.381 0.62 0.00 32.15 3.51
112 113 1.278985 TCATGTCAGCTTTCGACCCAT 59.721 47.619 0.62 0.00 32.15 4.00
113 114 0.684535 TCATGTCAGCTTTCGACCCA 59.315 50.000 0.62 0.00 32.15 4.51
114 115 1.808411 TTCATGTCAGCTTTCGACCC 58.192 50.000 0.62 0.00 32.15 4.46
115 116 2.548057 TGTTTCATGTCAGCTTTCGACC 59.452 45.455 0.62 0.00 32.15 4.79
116 117 3.878086 TGTTTCATGTCAGCTTTCGAC 57.122 42.857 0.00 0.00 0.00 4.20
117 118 4.095632 TGTTTGTTTCATGTCAGCTTTCGA 59.904 37.500 0.00 0.00 0.00 3.71
118 119 4.350346 TGTTTGTTTCATGTCAGCTTTCG 58.650 39.130 0.00 0.00 0.00 3.46
119 120 6.645700 TTTGTTTGTTTCATGTCAGCTTTC 57.354 33.333 0.00 0.00 0.00 2.62
120 121 8.891671 ATATTTGTTTGTTTCATGTCAGCTTT 57.108 26.923 0.00 0.00 0.00 3.51
121 122 7.599998 GGATATTTGTTTGTTTCATGTCAGCTT 59.400 33.333 0.00 0.00 0.00 3.74
122 123 7.092716 GGATATTTGTTTGTTTCATGTCAGCT 58.907 34.615 0.00 0.00 0.00 4.24
123 124 6.033831 CGGATATTTGTTTGTTTCATGTCAGC 59.966 38.462 0.00 0.00 0.00 4.26
124 125 7.083858 ACGGATATTTGTTTGTTTCATGTCAG 58.916 34.615 0.00 0.00 0.00 3.51
125 126 6.976088 ACGGATATTTGTTTGTTTCATGTCA 58.024 32.000 0.00 0.00 0.00 3.58
126 127 7.867445 AACGGATATTTGTTTGTTTCATGTC 57.133 32.000 0.00 0.00 0.00 3.06
127 128 8.071122 CAAACGGATATTTGTTTGTTTCATGT 57.929 30.769 18.44 0.00 46.08 3.21
136 137 2.601804 GGCGCAAACGGATATTTGTTT 58.398 42.857 10.83 1.62 40.92 2.83
137 138 1.135228 GGGCGCAAACGGATATTTGTT 60.135 47.619 10.83 0.00 40.92 2.83
138 139 0.454196 GGGCGCAAACGGATATTTGT 59.546 50.000 10.83 0.00 40.92 2.83
139 140 0.591236 CGGGCGCAAACGGATATTTG 60.591 55.000 10.83 0.00 41.62 2.32
140 141 1.725066 CGGGCGCAAACGGATATTT 59.275 52.632 10.83 0.00 40.57 1.40
141 142 2.830285 GCGGGCGCAAACGGATATT 61.830 57.895 10.83 0.00 41.49 1.28
142 143 3.276846 GCGGGCGCAAACGGATAT 61.277 61.111 10.83 0.00 41.49 1.63
162 163 5.526010 AACGAATAAATCAGACGTCCAAC 57.474 39.130 13.01 0.00 36.20 3.77
163 164 6.548441 AAAACGAATAAATCAGACGTCCAA 57.452 33.333 13.01 0.08 36.20 3.53
164 165 6.091169 GGTAAAACGAATAAATCAGACGTCCA 59.909 38.462 13.01 0.00 36.20 4.02
165 166 6.456047 GGGTAAAACGAATAAATCAGACGTCC 60.456 42.308 13.01 0.00 36.20 4.79
166 167 6.456047 GGGGTAAAACGAATAAATCAGACGTC 60.456 42.308 7.70 7.70 36.20 4.34
167 168 5.352293 GGGGTAAAACGAATAAATCAGACGT 59.648 40.000 0.00 0.00 38.81 4.34
168 169 5.352016 TGGGGTAAAACGAATAAATCAGACG 59.648 40.000 0.00 0.00 0.00 4.18
169 170 6.746745 TGGGGTAAAACGAATAAATCAGAC 57.253 37.500 0.00 0.00 0.00 3.51
170 171 7.230913 TGTTTGGGGTAAAACGAATAAATCAGA 59.769 33.333 0.00 0.00 41.92 3.27
171 172 7.371936 TGTTTGGGGTAAAACGAATAAATCAG 58.628 34.615 0.00 0.00 41.92 2.90
172 173 7.286215 TGTTTGGGGTAAAACGAATAAATCA 57.714 32.000 0.00 0.00 41.92 2.57
173 174 8.489559 GTTTGTTTGGGGTAAAACGAATAAATC 58.510 33.333 5.93 0.00 42.51 2.17
174 175 7.985752 TGTTTGTTTGGGGTAAAACGAATAAAT 59.014 29.630 5.93 0.00 42.51 1.40
175 176 7.325694 TGTTTGTTTGGGGTAAAACGAATAAA 58.674 30.769 5.93 0.00 42.51 1.40
176 177 6.870769 TGTTTGTTTGGGGTAAAACGAATAA 58.129 32.000 5.93 0.00 42.51 1.40
177 178 6.461110 TGTTTGTTTGGGGTAAAACGAATA 57.539 33.333 5.93 1.69 42.51 1.75
178 179 5.340439 TGTTTGTTTGGGGTAAAACGAAT 57.660 34.783 5.93 0.00 42.51 3.34
179 180 4.796038 TGTTTGTTTGGGGTAAAACGAA 57.204 36.364 0.00 0.00 41.92 3.85
180 181 4.461781 TCTTGTTTGTTTGGGGTAAAACGA 59.538 37.500 0.00 0.00 41.92 3.85
181 182 4.745649 TCTTGTTTGTTTGGGGTAAAACG 58.254 39.130 0.00 0.00 41.92 3.60
182 183 6.926826 CCTATCTTGTTTGTTTGGGGTAAAAC 59.073 38.462 0.00 0.00 39.90 2.43
183 184 6.042208 CCCTATCTTGTTTGTTTGGGGTAAAA 59.958 38.462 0.00 0.00 0.00 1.52
184 185 5.540719 CCCTATCTTGTTTGTTTGGGGTAAA 59.459 40.000 0.00 0.00 0.00 2.01
185 186 5.081032 CCCTATCTTGTTTGTTTGGGGTAA 58.919 41.667 0.00 0.00 0.00 2.85
186 187 4.106663 ACCCTATCTTGTTTGTTTGGGGTA 59.893 41.667 0.00 0.00 42.13 3.69
187 188 3.116900 ACCCTATCTTGTTTGTTTGGGGT 60.117 43.478 0.00 0.00 39.55 4.95
188 189 3.506398 ACCCTATCTTGTTTGTTTGGGG 58.494 45.455 0.00 0.00 37.78 4.96
189 190 4.799255 GCAACCCTATCTTGTTTGTTTGGG 60.799 45.833 0.00 0.00 39.26 4.12
190 191 4.306600 GCAACCCTATCTTGTTTGTTTGG 58.693 43.478 0.00 0.00 0.00 3.28
191 192 3.980775 CGCAACCCTATCTTGTTTGTTTG 59.019 43.478 0.00 0.00 0.00 2.93
192 193 3.552068 GCGCAACCCTATCTTGTTTGTTT 60.552 43.478 0.30 0.00 0.00 2.83
193 194 2.030274 GCGCAACCCTATCTTGTTTGTT 60.030 45.455 0.30 0.00 0.00 2.83
194 195 1.539827 GCGCAACCCTATCTTGTTTGT 59.460 47.619 0.30 0.00 0.00 2.83
195 196 1.465689 CGCGCAACCCTATCTTGTTTG 60.466 52.381 8.75 0.00 0.00 2.93
196 197 0.802494 CGCGCAACCCTATCTTGTTT 59.198 50.000 8.75 0.00 0.00 2.83
197 198 1.024579 CCGCGCAACCCTATCTTGTT 61.025 55.000 8.75 0.00 0.00 2.83
198 199 1.449601 CCGCGCAACCCTATCTTGT 60.450 57.895 8.75 0.00 0.00 3.16
199 200 1.449601 ACCGCGCAACCCTATCTTG 60.450 57.895 8.75 0.00 0.00 3.02
200 201 1.449601 CACCGCGCAACCCTATCTT 60.450 57.895 8.75 0.00 0.00 2.40
201 202 2.186903 CACCGCGCAACCCTATCT 59.813 61.111 8.75 0.00 0.00 1.98
202 203 2.895372 CCACCGCGCAACCCTATC 60.895 66.667 8.75 0.00 0.00 2.08
203 204 4.483243 CCCACCGCGCAACCCTAT 62.483 66.667 8.75 0.00 0.00 2.57
208 209 2.979120 TTAACCCCACCGCGCAAC 60.979 61.111 8.75 0.00 0.00 4.17
209 210 2.979120 GTTAACCCCACCGCGCAA 60.979 61.111 8.75 0.00 0.00 4.85
211 212 2.801483 TTAGGTTAACCCCACCGCGC 62.801 60.000 21.30 0.00 39.56 6.86
212 213 1.020861 GTTAGGTTAACCCCACCGCG 61.021 60.000 21.30 0.00 39.56 6.46
213 214 0.325933 AGTTAGGTTAACCCCACCGC 59.674 55.000 21.30 6.13 39.56 5.68
214 215 2.616256 GGAAGTTAGGTTAACCCCACCG 60.616 54.545 21.30 0.00 39.56 4.94
215 216 2.646297 AGGAAGTTAGGTTAACCCCACC 59.354 50.000 21.30 14.91 39.47 4.61
216 217 3.328637 TCAGGAAGTTAGGTTAACCCCAC 59.671 47.826 21.30 17.01 39.47 4.61
217 218 3.600433 TCAGGAAGTTAGGTTAACCCCA 58.400 45.455 21.30 6.74 39.47 4.96
218 219 4.645863 TTCAGGAAGTTAGGTTAACCCC 57.354 45.455 21.30 13.53 39.47 4.95
219 220 4.874396 CGATTCAGGAAGTTAGGTTAACCC 59.126 45.833 21.30 6.14 39.47 4.11
220 221 4.331992 GCGATTCAGGAAGTTAGGTTAACC 59.668 45.833 17.41 17.41 39.47 2.85
221 222 4.032558 CGCGATTCAGGAAGTTAGGTTAAC 59.967 45.833 0.00 0.00 38.94 2.01
222 223 4.178540 CGCGATTCAGGAAGTTAGGTTAA 58.821 43.478 0.00 0.00 0.00 2.01
223 224 3.429822 CCGCGATTCAGGAAGTTAGGTTA 60.430 47.826 8.23 0.00 0.00 2.85
224 225 2.618053 CGCGATTCAGGAAGTTAGGTT 58.382 47.619 0.00 0.00 0.00 3.50
225 226 1.134788 CCGCGATTCAGGAAGTTAGGT 60.135 52.381 8.23 0.00 0.00 3.08
226 227 1.136305 TCCGCGATTCAGGAAGTTAGG 59.864 52.381 8.23 0.00 32.86 2.69
238 239 0.737715 GCAGAACTGACTCCGCGATT 60.738 55.000 8.23 0.00 0.00 3.34
262 264 0.543749 GGAATGAGTGGACTCCCTGG 59.456 60.000 4.34 0.00 42.20 4.45
331 333 4.785453 CACGGCTGGCTCCTTCCC 62.785 72.222 0.00 0.00 0.00 3.97
371 373 2.733671 CTGCGTGACATGACAGCGG 61.734 63.158 16.48 14.06 0.00 5.52
405 407 2.202479 GCCATTCGCCGAACTTGC 60.202 61.111 0.00 1.13 0.00 4.01
433 435 8.566260 TGAGAGAGGTAGTATTATTTCGTTAGC 58.434 37.037 0.00 0.00 0.00 3.09
435 437 9.624373 ACTGAGAGAGGTAGTATTATTTCGTTA 57.376 33.333 0.00 0.00 0.00 3.18
443 445 7.778853 CCCTGTAAACTGAGAGAGGTAGTATTA 59.221 40.741 0.00 0.00 0.00 0.98
445 447 6.130569 CCCTGTAAACTGAGAGAGGTAGTAT 58.869 44.000 0.00 0.00 0.00 2.12
446 448 5.507637 CCCTGTAAACTGAGAGAGGTAGTA 58.492 45.833 0.00 0.00 0.00 1.82
447 449 4.345854 CCCTGTAAACTGAGAGAGGTAGT 58.654 47.826 0.00 0.00 0.00 2.73
448 450 3.131400 GCCCTGTAAACTGAGAGAGGTAG 59.869 52.174 0.00 0.00 0.00 3.18
450 452 1.903183 GCCCTGTAAACTGAGAGAGGT 59.097 52.381 0.00 0.00 0.00 3.85
452 454 1.546476 ACGCCCTGTAAACTGAGAGAG 59.454 52.381 0.00 0.00 0.00 3.20
453 455 1.544691 GACGCCCTGTAAACTGAGAGA 59.455 52.381 0.00 0.00 0.00 3.10
454 456 1.404315 GGACGCCCTGTAAACTGAGAG 60.404 57.143 0.00 0.00 0.00 3.20
455 457 0.606604 GGACGCCCTGTAAACTGAGA 59.393 55.000 0.00 0.00 0.00 3.27
456 458 0.320374 TGGACGCCCTGTAAACTGAG 59.680 55.000 0.00 0.00 0.00 3.35
457 459 0.034337 GTGGACGCCCTGTAAACTGA 59.966 55.000 0.00 0.00 0.00 3.41
458 460 1.289109 CGTGGACGCCCTGTAAACTG 61.289 60.000 0.00 0.00 0.00 3.16
459 461 1.005394 CGTGGACGCCCTGTAAACT 60.005 57.895 0.00 0.00 0.00 2.66
460 462 1.301165 ACGTGGACGCCCTGTAAAC 60.301 57.895 0.00 0.00 44.43 2.01
461 463 1.301087 CACGTGGACGCCCTGTAAA 60.301 57.895 7.95 0.00 44.43 2.01
462 464 2.340809 CACGTGGACGCCCTGTAA 59.659 61.111 7.95 0.00 44.43 2.41
463 465 4.367023 GCACGTGGACGCCCTGTA 62.367 66.667 18.88 0.00 44.43 2.74
469 471 2.005960 ATCTAGAGGCACGTGGACGC 62.006 60.000 18.88 1.71 44.43 5.19
470 472 0.029567 GATCTAGAGGCACGTGGACG 59.970 60.000 18.88 0.00 46.33 4.79
471 473 1.103803 TGATCTAGAGGCACGTGGAC 58.896 55.000 18.88 0.44 0.00 4.02
472 474 2.073252 ATGATCTAGAGGCACGTGGA 57.927 50.000 18.88 4.95 0.00 4.02
473 475 2.898729 AATGATCTAGAGGCACGTGG 57.101 50.000 18.88 0.00 0.00 4.94
474 476 6.479990 TCAAATTAATGATCTAGAGGCACGTG 59.520 38.462 12.28 12.28 0.00 4.49
475 477 6.480320 GTCAAATTAATGATCTAGAGGCACGT 59.520 38.462 0.00 0.00 0.00 4.49
476 478 6.073548 GGTCAAATTAATGATCTAGAGGCACG 60.074 42.308 0.00 0.00 0.00 5.34
477 479 6.767902 TGGTCAAATTAATGATCTAGAGGCAC 59.232 38.462 0.00 0.00 31.51 5.01
478 480 6.899089 TGGTCAAATTAATGATCTAGAGGCA 58.101 36.000 0.00 0.00 31.51 4.75
479 481 7.255277 GGTTGGTCAAATTAATGATCTAGAGGC 60.255 40.741 0.00 0.00 31.51 4.70
480 482 7.995488 AGGTTGGTCAAATTAATGATCTAGAGG 59.005 37.037 0.00 0.00 31.51 3.69
481 483 8.970859 AGGTTGGTCAAATTAATGATCTAGAG 57.029 34.615 0.00 0.00 31.51 2.43
543 545 9.325198 GGTTTGGAAATAAAACATCTGAAGTTT 57.675 29.630 5.27 5.27 40.66 2.66
544 546 7.651704 CGGTTTGGAAATAAAACATCTGAAGTT 59.348 33.333 0.00 0.00 38.91 2.66
545 547 7.145323 CGGTTTGGAAATAAAACATCTGAAGT 58.855 34.615 1.92 0.00 38.91 3.01
546 548 7.145323 ACGGTTTGGAAATAAAACATCTGAAG 58.855 34.615 1.92 0.00 38.91 3.02
547 549 7.045126 ACGGTTTGGAAATAAAACATCTGAA 57.955 32.000 1.92 0.00 38.91 3.02
548 550 6.642707 ACGGTTTGGAAATAAAACATCTGA 57.357 33.333 1.92 0.00 38.91 3.27
582 584 8.647796 CCCTAGACACATCCAAACTATATAACA 58.352 37.037 0.00 0.00 0.00 2.41
583 585 7.603024 GCCCTAGACACATCCAAACTATATAAC 59.397 40.741 0.00 0.00 0.00 1.89
584 586 7.291416 TGCCCTAGACACATCCAAACTATATAA 59.709 37.037 0.00 0.00 0.00 0.98
585 587 6.785466 TGCCCTAGACACATCCAAACTATATA 59.215 38.462 0.00 0.00 0.00 0.86
586 588 5.606749 TGCCCTAGACACATCCAAACTATAT 59.393 40.000 0.00 0.00 0.00 0.86
587 589 4.966168 TGCCCTAGACACATCCAAACTATA 59.034 41.667 0.00 0.00 0.00 1.31
588 590 3.780294 TGCCCTAGACACATCCAAACTAT 59.220 43.478 0.00 0.00 0.00 2.12
589 591 3.055385 GTGCCCTAGACACATCCAAACTA 60.055 47.826 10.07 0.00 37.96 2.24
590 592 1.985159 TGCCCTAGACACATCCAAACT 59.015 47.619 0.00 0.00 0.00 2.66
591 593 2.084546 GTGCCCTAGACACATCCAAAC 58.915 52.381 10.07 0.00 37.96 2.93
592 594 1.702401 TGTGCCCTAGACACATCCAAA 59.298 47.619 12.81 0.00 42.88 3.28
593 595 1.357137 TGTGCCCTAGACACATCCAA 58.643 50.000 12.81 0.00 42.88 3.53
594 596 3.081048 TGTGCCCTAGACACATCCA 57.919 52.632 12.81 0.00 42.88 3.41
599 601 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
627 629 8.700051 ACTCACTCACTTAGATATGCAATAACT 58.300 33.333 0.00 0.00 35.90 2.24
628 630 8.879342 ACTCACTCACTTAGATATGCAATAAC 57.121 34.615 0.00 0.00 29.06 1.89
629 631 8.695456 TGACTCACTCACTTAGATATGCAATAA 58.305 33.333 0.00 0.00 29.06 1.40
630 632 8.237811 TGACTCACTCACTTAGATATGCAATA 57.762 34.615 0.00 0.00 0.00 1.90
631 633 7.117285 TGACTCACTCACTTAGATATGCAAT 57.883 36.000 0.00 0.00 0.00 3.56
632 634 6.530019 TGACTCACTCACTTAGATATGCAA 57.470 37.500 0.00 0.00 0.00 4.08
633 635 6.530019 TTGACTCACTCACTTAGATATGCA 57.470 37.500 0.00 0.00 0.00 3.96
634 636 6.813649 TGTTTGACTCACTCACTTAGATATGC 59.186 38.462 0.00 0.00 0.00 3.14
635 637 8.939201 ATGTTTGACTCACTCACTTAGATATG 57.061 34.615 0.00 0.00 0.00 1.78
638 640 9.429359 CTTTATGTTTGACTCACTCACTTAGAT 57.571 33.333 0.00 0.00 0.00 1.98
639 641 8.638873 TCTTTATGTTTGACTCACTCACTTAGA 58.361 33.333 0.00 0.00 0.00 2.10
640 642 8.818141 TCTTTATGTTTGACTCACTCACTTAG 57.182 34.615 0.00 0.00 0.00 2.18
641 643 7.872993 CCTCTTTATGTTTGACTCACTCACTTA 59.127 37.037 0.00 0.00 0.00 2.24
642 644 6.708054 CCTCTTTATGTTTGACTCACTCACTT 59.292 38.462 0.00 0.00 0.00 3.16
643 645 6.042093 TCCTCTTTATGTTTGACTCACTCACT 59.958 38.462 0.00 0.00 0.00 3.41
644 646 6.223852 TCCTCTTTATGTTTGACTCACTCAC 58.776 40.000 0.00 0.00 0.00 3.51
645 647 6.419484 TCCTCTTTATGTTTGACTCACTCA 57.581 37.500 0.00 0.00 0.00 3.41
646 648 7.730364 TTTCCTCTTTATGTTTGACTCACTC 57.270 36.000 0.00 0.00 0.00 3.51
647 649 8.519799 TTTTTCCTCTTTATGTTTGACTCACT 57.480 30.769 0.00 0.00 0.00 3.41
672 674 9.883142 TGTGTGTGGATATTTTTCTTTTCTTTT 57.117 25.926 0.00 0.00 0.00 2.27
674 676 9.696917 GATGTGTGTGGATATTTTTCTTTTCTT 57.303 29.630 0.00 0.00 0.00 2.52
675 677 9.082313 AGATGTGTGTGGATATTTTTCTTTTCT 57.918 29.630 0.00 0.00 0.00 2.52
676 678 9.346725 GAGATGTGTGTGGATATTTTTCTTTTC 57.653 33.333 0.00 0.00 0.00 2.29
677 679 8.023128 CGAGATGTGTGTGGATATTTTTCTTTT 58.977 33.333 0.00 0.00 0.00 2.27
678 680 7.390440 TCGAGATGTGTGTGGATATTTTTCTTT 59.610 33.333 0.00 0.00 0.00 2.52
679 681 6.878923 TCGAGATGTGTGTGGATATTTTTCTT 59.121 34.615 0.00 0.00 0.00 2.52
680 682 6.313905 GTCGAGATGTGTGTGGATATTTTTCT 59.686 38.462 0.00 0.00 0.00 2.52
681 683 6.478588 GTCGAGATGTGTGTGGATATTTTTC 58.521 40.000 0.00 0.00 0.00 2.29
682 684 5.063438 CGTCGAGATGTGTGTGGATATTTTT 59.937 40.000 0.00 0.00 0.00 1.94
683 685 4.566759 CGTCGAGATGTGTGTGGATATTTT 59.433 41.667 0.00 0.00 0.00 1.82
684 686 4.112634 CGTCGAGATGTGTGTGGATATTT 58.887 43.478 0.00 0.00 0.00 1.40
685 687 3.130516 ACGTCGAGATGTGTGTGGATATT 59.869 43.478 0.00 0.00 0.00 1.28
686 688 2.688446 ACGTCGAGATGTGTGTGGATAT 59.312 45.455 0.00 0.00 0.00 1.63
687 689 2.089201 ACGTCGAGATGTGTGTGGATA 58.911 47.619 0.00 0.00 0.00 2.59
688 690 0.888619 ACGTCGAGATGTGTGTGGAT 59.111 50.000 0.00 0.00 0.00 3.41
689 691 1.525941 TACGTCGAGATGTGTGTGGA 58.474 50.000 8.11 0.00 0.00 4.02
690 692 2.095415 TCTTACGTCGAGATGTGTGTGG 60.095 50.000 8.11 0.00 0.00 4.17
691 693 3.197434 TCTTACGTCGAGATGTGTGTG 57.803 47.619 8.11 0.00 0.00 3.82
692 694 3.439129 TGATCTTACGTCGAGATGTGTGT 59.561 43.478 16.44 0.00 34.13 3.72
693 695 4.016113 TGATCTTACGTCGAGATGTGTG 57.984 45.455 16.44 1.72 34.13 3.82
694 696 4.696899 TTGATCTTACGTCGAGATGTGT 57.303 40.909 16.44 0.00 34.13 3.72
695 697 6.691388 TGTTATTGATCTTACGTCGAGATGTG 59.309 38.462 16.44 0.00 34.13 3.21
696 698 6.792326 TGTTATTGATCTTACGTCGAGATGT 58.208 36.000 16.44 3.31 34.13 3.06
697 699 7.859613 ATGTTATTGATCTTACGTCGAGATG 57.140 36.000 16.44 0.00 34.13 2.90
698 700 9.000486 TCTATGTTATTGATCTTACGTCGAGAT 58.000 33.333 12.62 12.62 36.60 2.75
699 701 8.374327 TCTATGTTATTGATCTTACGTCGAGA 57.626 34.615 0.00 0.00 0.00 4.04
700 702 8.893884 GTTCTATGTTATTGATCTTACGTCGAG 58.106 37.037 0.00 0.00 0.00 4.04
701 703 8.618677 AGTTCTATGTTATTGATCTTACGTCGA 58.381 33.333 0.00 0.00 0.00 4.20
702 704 8.783999 AGTTCTATGTTATTGATCTTACGTCG 57.216 34.615 0.00 0.00 0.00 5.12
722 724 9.442047 GCCATAAGTATTGCATATCTAAGTTCT 57.558 33.333 0.00 0.00 0.00 3.01
723 725 9.219603 TGCCATAAGTATTGCATATCTAAGTTC 57.780 33.333 0.00 0.00 30.49 3.01
724 726 9.003658 GTGCCATAAGTATTGCATATCTAAGTT 57.996 33.333 0.92 0.00 36.83 2.66
725 727 8.156820 TGTGCCATAAGTATTGCATATCTAAGT 58.843 33.333 0.92 0.00 36.83 2.24
726 728 8.552083 TGTGCCATAAGTATTGCATATCTAAG 57.448 34.615 0.92 0.00 36.83 2.18
727 729 9.166173 GATGTGCCATAAGTATTGCATATCTAA 57.834 33.333 18.74 0.00 43.34 2.10
728 730 8.722480 GATGTGCCATAAGTATTGCATATCTA 57.278 34.615 18.74 1.53 43.34 1.98
729 731 7.621428 GATGTGCCATAAGTATTGCATATCT 57.379 36.000 18.74 0.00 43.34 1.98
730 732 7.621428 AGATGTGCCATAAGTATTGCATATC 57.379 36.000 18.53 18.53 45.14 1.63
731 733 8.542926 TCTAGATGTGCCATAAGTATTGCATAT 58.457 33.333 6.39 6.39 38.33 1.78
732 734 7.906327 TCTAGATGTGCCATAAGTATTGCATA 58.094 34.615 0.92 0.00 36.83 3.14
733 735 6.772605 TCTAGATGTGCCATAAGTATTGCAT 58.227 36.000 0.92 0.00 36.83 3.96
734 736 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
735 737 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
756 758 7.655328 ACTATATCAGTTTTGCTAGAGCACATC 59.345 37.037 3.07 0.00 42.69 3.06
757 759 7.504403 ACTATATCAGTTTTGCTAGAGCACAT 58.496 34.615 3.07 0.00 42.69 3.21
758 760 6.878317 ACTATATCAGTTTTGCTAGAGCACA 58.122 36.000 3.07 0.00 42.69 4.57
759 761 7.778470 AACTATATCAGTTTTGCTAGAGCAC 57.222 36.000 3.07 0.00 45.54 4.40
788 790 9.403583 CCTAGGTTACCAATTTTATCAGCTTAA 57.596 33.333 3.51 0.00 0.00 1.85
789 791 8.554011 ACCTAGGTTACCAATTTTATCAGCTTA 58.446 33.333 9.21 0.00 0.00 3.09
790 792 7.410991 ACCTAGGTTACCAATTTTATCAGCTT 58.589 34.615 9.21 0.00 0.00 3.74
791 793 6.970191 ACCTAGGTTACCAATTTTATCAGCT 58.030 36.000 9.21 0.00 0.00 4.24
792 794 8.919777 ATACCTAGGTTACCAATTTTATCAGC 57.080 34.615 22.11 0.00 0.00 4.26
800 802 9.443365 ACTATGTGTATACCTAGGTTACCAATT 57.557 33.333 22.11 3.83 31.59 2.32
802 804 9.934784 TTACTATGTGTATACCTAGGTTACCAA 57.065 33.333 22.11 12.40 31.59 3.67
829 831 9.205719 TGCGTGTAACTTTTTGTATGTCTAATA 57.794 29.630 0.00 0.00 31.75 0.98
830 832 8.090250 TGCGTGTAACTTTTTGTATGTCTAAT 57.910 30.769 0.00 0.00 31.75 1.73
831 833 7.479897 TGCGTGTAACTTTTTGTATGTCTAA 57.520 32.000 0.00 0.00 31.75 2.10
832 834 7.479897 TTGCGTGTAACTTTTTGTATGTCTA 57.520 32.000 0.00 0.00 31.75 2.59
833 835 5.994887 TGCGTGTAACTTTTTGTATGTCT 57.005 34.783 0.00 0.00 31.75 3.41
834 836 7.617533 AATTGCGTGTAACTTTTTGTATGTC 57.382 32.000 0.00 0.00 31.75 3.06
835 837 8.960075 GTTAATTGCGTGTAACTTTTTGTATGT 58.040 29.630 0.00 0.00 31.75 2.29
836 838 8.959058 TGTTAATTGCGTGTAACTTTTTGTATG 58.041 29.630 0.00 0.00 32.51 2.39
837 839 8.960075 GTGTTAATTGCGTGTAACTTTTTGTAT 58.040 29.630 0.00 0.00 32.51 2.29
838 840 8.182881 AGTGTTAATTGCGTGTAACTTTTTGTA 58.817 29.630 0.00 0.00 32.51 2.41
839 841 7.008810 CAGTGTTAATTGCGTGTAACTTTTTGT 59.991 33.333 0.00 0.00 32.51 2.83
840 842 7.219154 TCAGTGTTAATTGCGTGTAACTTTTTG 59.781 33.333 0.00 0.80 32.51 2.44
841 843 7.219344 GTCAGTGTTAATTGCGTGTAACTTTTT 59.781 33.333 0.00 0.00 32.51 1.94
842 844 6.689669 GTCAGTGTTAATTGCGTGTAACTTTT 59.310 34.615 0.00 0.00 32.51 2.27
843 845 6.037830 AGTCAGTGTTAATTGCGTGTAACTTT 59.962 34.615 0.00 0.00 32.51 2.66
844 846 5.526111 AGTCAGTGTTAATTGCGTGTAACTT 59.474 36.000 0.00 0.00 32.51 2.66
845 847 5.054477 AGTCAGTGTTAATTGCGTGTAACT 58.946 37.500 0.00 0.00 32.51 2.24
846 848 5.338614 AGTCAGTGTTAATTGCGTGTAAC 57.661 39.130 0.00 0.00 0.00 2.50
847 849 4.149221 CGAGTCAGTGTTAATTGCGTGTAA 59.851 41.667 0.00 0.00 0.00 2.41
848 850 3.671459 CGAGTCAGTGTTAATTGCGTGTA 59.329 43.478 0.00 0.00 0.00 2.90
849 851 2.475111 CGAGTCAGTGTTAATTGCGTGT 59.525 45.455 0.00 0.00 0.00 4.49
850 852 2.475111 ACGAGTCAGTGTTAATTGCGTG 59.525 45.455 0.00 0.00 0.00 5.34
856 858 3.402628 AGCCAACGAGTCAGTGTTAAT 57.597 42.857 0.00 0.00 0.00 1.40
894 1241 3.197790 CCAGCGGCCAATCAGTCG 61.198 66.667 2.24 0.00 0.00 4.18
899 1279 0.753111 AGATTTCCCAGCGGCCAATC 60.753 55.000 2.24 2.27 32.46 2.67
956 1336 1.691219 GGCAATGGAGGAGGGTCAA 59.309 57.895 0.00 0.00 0.00 3.18
959 1339 1.915078 CTTCGGCAATGGAGGAGGGT 61.915 60.000 0.00 0.00 0.00 4.34
989 1369 0.827368 GGTCTCCATCTCAGGTGTCC 59.173 60.000 0.00 0.00 0.00 4.02
997 1377 0.461961 CCGTCCTTGGTCTCCATCTC 59.538 60.000 0.00 0.00 31.53 2.75
1329 4257 4.851214 GGCCTCGCCTCCTCCTCT 62.851 72.222 0.00 0.00 46.69 3.69
1857 4797 1.153667 CCTCAGCTTCACCTCGCTC 60.154 63.158 0.00 0.00 33.45 5.03
2166 5112 0.770499 TGTCCACAAGATTCCTGGCA 59.230 50.000 0.00 0.00 0.00 4.92
2178 5124 1.070786 GCCGACCTTCTTGTCCACA 59.929 57.895 0.00 0.00 31.35 4.17
2371 5317 1.810606 CTGTGCTCCGACAGGTGACT 61.811 60.000 0.00 0.00 39.85 3.41
2373 5319 3.051210 CTGTGCTCCGACAGGTGA 58.949 61.111 0.00 0.00 39.85 4.02
2411 5357 8.134905 AGTTGATGAAATTTGAAAGTTTCAGC 57.865 30.769 17.36 17.30 45.77 4.26
2427 5373 8.150296 TCACTTCACTGAAAGATAGTTGATGAA 58.850 33.333 0.00 0.00 37.43 2.57
2467 5413 1.531058 GGCGATCGGTTTTGGAAATCG 60.531 52.381 18.30 0.00 41.50 3.34
2476 5422 4.712122 AATTTGTAATGGCGATCGGTTT 57.288 36.364 18.30 0.00 0.00 3.27
2479 5425 5.163302 TGTAAATTTGTAATGGCGATCGG 57.837 39.130 18.30 0.00 0.00 4.18
2529 5478 4.156477 CACCCCCTTGTTCAATTTTCCTA 58.844 43.478 0.00 0.00 0.00 2.94
2536 5485 2.445525 ACTACACACCCCCTTGTTCAAT 59.554 45.455 0.00 0.00 0.00 2.57
2539 5488 1.892209 CACTACACACCCCCTTGTTC 58.108 55.000 0.00 0.00 0.00 3.18
2671 5797 3.509575 ACAACAATGTTGTGTCACTTGGT 59.490 39.130 28.38 2.01 41.31 3.67
2728 5857 1.941377 AAGCTTTTGATGCATGGGGA 58.059 45.000 2.46 0.00 0.00 4.81
2759 6212 1.152610 AGGCATGCCATGATGGTCC 60.153 57.895 37.18 7.34 40.46 4.46
2763 6216 1.660355 GCAGAGGCATGCCATGATG 59.340 57.895 37.18 27.35 40.43 3.07
2902 9542 7.897575 TTTACCAATTTCCATTATGCAACAC 57.102 32.000 0.00 0.00 0.00 3.32
2943 9583 1.967319 TCTGCTGTTGAAGTTCCACC 58.033 50.000 4.75 0.00 0.00 4.61
2965 9605 5.032863 CGGTAAGTTCATACTGTACTTCCG 58.967 45.833 15.46 15.46 38.59 4.30
3011 9651 4.406648 AGGCCAGCTTAATATTTTTGCC 57.593 40.909 5.01 0.00 36.62 4.52
3025 9665 2.770164 TCTAAGAGTGAAAGGCCAGC 57.230 50.000 5.01 0.00 0.00 4.85
3048 9688 5.512298 TGATGGAAGATTGATGGTTGATGT 58.488 37.500 0.00 0.00 0.00 3.06
3222 9862 6.072112 TGTTGAAGTTTATTTGGAGCAGTC 57.928 37.500 0.00 0.00 0.00 3.51
3308 9948 2.224621 ACTGGTTCATGACAGACCAAGG 60.225 50.000 16.60 9.93 38.09 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.