Multiple sequence alignment - TraesCS3A01G376300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G376300 chr3A 100.000 7388 0 0 1 7388 625244487 625237100 0.000000e+00 13644.0
1 TraesCS3A01G376300 chr3D 96.015 2359 82 4 3787 6136 482202317 482199962 0.000000e+00 3825.0
2 TraesCS3A01G376300 chr3D 89.810 2522 144 50 291 2756 482205765 482203301 0.000000e+00 3129.0
3 TraesCS3A01G376300 chr3D 95.401 848 23 3 2942 3788 482203308 482202476 0.000000e+00 1336.0
4 TraesCS3A01G376300 chr3D 84.904 1040 82 46 6133 7150 482199938 482198952 0.000000e+00 981.0
5 TraesCS3A01G376300 chr3D 90.909 121 9 2 7176 7296 482198964 482198846 2.130000e-35 161.0
6 TraesCS3A01G376300 chr3D 92.523 107 8 0 7282 7388 482198709 482198603 3.570000e-33 154.0
7 TraesCS3A01G376300 chr3D 94.915 59 3 0 1615 1673 29686460 29686402 7.890000e-15 93.5
8 TraesCS3A01G376300 chr3D 93.220 59 4 0 1615 1673 610730676 610730618 3.670000e-13 87.9
9 TraesCS3A01G376300 chr3B 95.032 2335 105 6 3806 6136 644308357 644306030 0.000000e+00 3659.0
10 TraesCS3A01G376300 chr3B 89.522 2529 143 61 291 2756 644311948 644309479 0.000000e+00 3090.0
11 TraesCS3A01G376300 chr3B 94.624 744 28 5 3048 3788 644309261 644308527 0.000000e+00 1142.0
12 TraesCS3A01G376300 chr3B 92.495 533 38 2 6133 6664 644306006 644305475 0.000000e+00 761.0
13 TraesCS3A01G376300 chr3B 87.841 477 46 9 6648 7118 644305306 644304836 3.900000e-152 549.0
14 TraesCS3A01G376300 chr3B 98.522 203 2 1 2747 2948 756675174 756675376 2.530000e-94 357.0
15 TraesCS3A01G376300 chr3B 99.471 189 1 0 2753 2941 689513165 689512977 1.970000e-90 344.0
16 TraesCS3A01G376300 chr3B 85.906 298 18 9 1 296 644312246 644311971 5.600000e-76 296.0
17 TraesCS3A01G376300 chr3B 92.079 101 7 1 2942 3041 644309486 644309386 2.780000e-29 141.0
18 TraesCS3A01G376300 chr3B 91.089 101 7 2 7196 7296 644304816 644304718 1.290000e-27 135.0
19 TraesCS3A01G376300 chr3B 95.082 61 3 0 3528 3588 644308730 644308670 6.100000e-16 97.1
20 TraesCS3A01G376300 chr5B 98.492 199 1 2 2750 2947 282048290 282048093 4.240000e-92 350.0
21 TraesCS3A01G376300 chrUn 100.000 187 0 0 2757 2943 5429816 5429630 5.490000e-91 346.0
22 TraesCS3A01G376300 chr2A 100.000 187 0 0 2757 2943 615351970 615351784 5.490000e-91 346.0
23 TraesCS3A01G376300 chr4B 99.474 190 0 1 2753 2942 564389673 564389485 1.970000e-90 344.0
24 TraesCS3A01G376300 chr4B 97.044 203 2 3 2750 2951 600292666 600292467 9.180000e-89 339.0
25 TraesCS3A01G376300 chr5A 98.953 191 2 0 2751 2941 321925074 321925264 7.100000e-90 342.0
26 TraesCS3A01G376300 chr5A 97.059 204 3 3 2749 2950 681294277 681294075 2.550000e-89 340.0
27 TraesCS3A01G376300 chr1A 91.781 73 5 1 2425 2496 469589442 469589514 4.720000e-17 100.0
28 TraesCS3A01G376300 chr5D 96.610 59 2 0 1615 1673 529529556 529529498 1.700000e-16 99.0
29 TraesCS3A01G376300 chr1B 90.411 73 6 1 2425 2496 494156654 494156726 2.190000e-15 95.3
30 TraesCS3A01G376300 chr1D 90.278 72 6 1 2425 2495 370627881 370627952 7.890000e-15 93.5
31 TraesCS3A01G376300 chr7D 94.737 57 3 0 1615 1671 595977477 595977421 1.020000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G376300 chr3A 625237100 625244487 7387 True 13644.000000 13644 100.000000 1 7388 1 chr3A.!!$R1 7387
1 TraesCS3A01G376300 chr3D 482198603 482205765 7162 True 1597.666667 3825 91.593667 291 7388 6 chr3D.!!$R3 7097
2 TraesCS3A01G376300 chr3B 644304718 644312246 7528 True 1096.677778 3659 91.518889 1 7296 9 chr3B.!!$R2 7295

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 928 0.114364 ACAGGGGGTGGGTTTTGATC 59.886 55.0 0.0 0.0 0.00 2.92 F
2614 2744 0.037326 TAGAAAGTGCCTGCCGACTG 60.037 55.0 0.0 0.0 0.00 3.51 F
2874 3006 0.040425 GCGGGCATATTTGTAAGGCG 60.040 55.0 0.0 0.0 0.00 5.52 F
2875 3007 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.0 0.0 0.0 0.00 6.53 F
4071 4499 0.249280 GTTCCCGTTTTGGCTGTTGG 60.249 55.0 0.0 0.0 35.87 3.77 F
5212 5645 1.909700 TGCAAAAAGCCCTTCTCGAT 58.090 45.0 0.0 0.0 44.83 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2768 2900 0.319641 CCTTAGATCGCCTTACCGCC 60.320 60.000 0.00 0.0 0.00 6.13 R
4426 4859 2.436173 GGAACTTGTAGCTAGCCCTGAT 59.564 50.000 12.13 0.0 0.00 2.90 R
4671 5104 5.246307 GTGAGTTGTTTACCCTGAGCTTAT 58.754 41.667 0.00 0.0 0.00 1.73 R
4838 5271 5.503927 AGGAGATGCTTGTATGTGTTTCAT 58.496 37.500 0.00 0.0 40.25 2.57 R
5315 5748 0.478072 ACTGGGTGGAGCACATTTCA 59.522 50.000 0.00 0.0 35.86 2.69 R
7084 7767 0.387367 CAGGAGAGGACGACGTTGTG 60.387 60.000 14.59 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.859784 GGTTTGGCCGTCAAATCG 57.140 55.556 0.66 0.00 45.79 3.34
57 58 6.970484 ACGGATATTTGGAATTAATGCTGAC 58.030 36.000 0.00 0.00 0.00 3.51
76 77 3.314541 ACGAGAGTGGTTAATTCGCTT 57.685 42.857 0.00 0.00 46.97 4.68
77 78 4.445452 ACGAGAGTGGTTAATTCGCTTA 57.555 40.909 0.00 0.00 46.97 3.09
78 79 4.171754 ACGAGAGTGGTTAATTCGCTTAC 58.828 43.478 0.00 0.00 46.97 2.34
79 80 4.082354 ACGAGAGTGGTTAATTCGCTTACT 60.082 41.667 0.00 0.00 46.97 2.24
80 81 4.499758 CGAGAGTGGTTAATTCGCTTACTC 59.500 45.833 0.00 0.00 34.75 2.59
81 82 5.652518 GAGAGTGGTTAATTCGCTTACTCT 58.347 41.667 0.00 0.00 44.18 3.24
82 83 6.457934 CGAGAGTGGTTAATTCGCTTACTCTA 60.458 42.308 0.00 0.00 42.27 2.43
83 84 6.562518 AGAGTGGTTAATTCGCTTACTCTAC 58.437 40.000 0.00 0.00 40.93 2.59
84 85 6.377712 AGAGTGGTTAATTCGCTTACTCTACT 59.622 38.462 0.00 0.00 40.93 2.57
85 86 7.555554 AGAGTGGTTAATTCGCTTACTCTACTA 59.444 37.037 0.00 0.00 40.93 1.82
86 87 7.479150 AGTGGTTAATTCGCTTACTCTACTAC 58.521 38.462 0.00 0.00 0.00 2.73
87 88 7.338957 AGTGGTTAATTCGCTTACTCTACTACT 59.661 37.037 0.00 0.00 0.00 2.57
88 89 7.972832 GTGGTTAATTCGCTTACTCTACTACTT 59.027 37.037 0.00 0.00 0.00 2.24
89 90 9.177608 TGGTTAATTCGCTTACTCTACTACTTA 57.822 33.333 0.00 0.00 0.00 2.24
97 98 8.084684 TCGCTTACTCTACTACTTATATCGTCA 58.915 37.037 0.00 0.00 0.00 4.35
140 142 2.144730 ACGTTGCAAATTAGGCGTACA 58.855 42.857 0.00 0.00 0.00 2.90
144 146 4.143073 CGTTGCAAATTAGGCGTACAACTA 60.143 41.667 0.00 0.00 35.07 2.24
145 147 4.932268 TGCAAATTAGGCGTACAACTAC 57.068 40.909 0.00 0.00 0.00 2.73
152 154 5.551760 TTAGGCGTACAACTACACTCTAC 57.448 43.478 0.00 0.00 0.00 2.59
155 157 3.057315 GGCGTACAACTACACTCTACCAA 60.057 47.826 0.00 0.00 0.00 3.67
156 158 4.381292 GGCGTACAACTACACTCTACCAAT 60.381 45.833 0.00 0.00 0.00 3.16
223 225 9.668497 AATTAAGTGTTAATCCCTCTTCACTAC 57.332 33.333 0.00 0.00 34.88 2.73
224 226 6.936968 AAGTGTTAATCCCTCTTCACTACT 57.063 37.500 0.00 0.00 35.53 2.57
225 227 9.537852 TTAAGTGTTAATCCCTCTTCACTACTA 57.462 33.333 0.00 0.00 35.53 1.82
233 235 8.472007 AATCCCTCTTCACTACTAATCACTAG 57.528 38.462 0.00 0.00 0.00 2.57
293 296 5.047590 ACTTCCCCCATTTGACGATTTAAAC 60.048 40.000 0.00 0.00 0.00 2.01
296 299 5.047660 TCCCCCATTTGACGATTTAAACAAG 60.048 40.000 0.00 0.00 0.00 3.16
297 300 5.167845 CCCCATTTGACGATTTAAACAAGG 58.832 41.667 0.00 0.00 0.00 3.61
298 301 5.047660 CCCCATTTGACGATTTAAACAAGGA 60.048 40.000 0.00 0.00 0.00 3.36
309 341 6.972328 CGATTTAAACAAGGAGAGAGAGAGAG 59.028 42.308 0.00 0.00 0.00 3.20
435 484 4.517703 GGCGACGAGACGAGACGG 62.518 72.222 0.00 0.00 35.09 4.79
436 485 4.517703 GCGACGAGACGAGACGGG 62.518 72.222 0.00 0.00 35.09 5.28
437 486 3.862402 CGACGAGACGAGACGGGG 61.862 72.222 0.00 0.00 35.09 5.73
438 487 4.176851 GACGAGACGAGACGGGGC 62.177 72.222 0.00 0.00 0.00 5.80
585 645 4.152964 GCGGTAAGGTCCCCGTCC 62.153 72.222 6.87 0.00 45.91 4.79
708 768 3.636313 TACAGCCGCGAAACTCCGG 62.636 63.158 8.23 0.00 46.94 5.14
734 794 3.733337 GGATTCGTGTGCCTAGATGATT 58.267 45.455 0.00 0.00 0.00 2.57
735 795 4.558697 CGGATTCGTGTGCCTAGATGATTA 60.559 45.833 0.00 0.00 0.00 1.75
737 797 5.509840 GGATTCGTGTGCCTAGATGATTAGT 60.510 44.000 0.00 0.00 0.00 2.24
738 798 6.294564 GGATTCGTGTGCCTAGATGATTAGTA 60.295 42.308 0.00 0.00 0.00 1.82
739 799 5.434352 TCGTGTGCCTAGATGATTAGTAC 57.566 43.478 0.00 0.00 0.00 2.73
740 800 5.131067 TCGTGTGCCTAGATGATTAGTACT 58.869 41.667 0.00 0.00 0.00 2.73
753 813 9.628500 AGATGATTAGTACTGTATGTGACTACA 57.372 33.333 5.39 0.00 41.89 2.74
833 928 0.114364 ACAGGGGGTGGGTTTTGATC 59.886 55.000 0.00 0.00 0.00 2.92
842 937 4.485163 GGTGGGTTTTGATCAAATTCGAG 58.515 43.478 21.10 0.00 0.00 4.04
864 959 2.680913 AAGGCGTGCGCTGATGTTC 61.681 57.895 16.21 0.00 41.60 3.18
884 979 4.095410 TCGGCTGATTTATGCTTGTTTG 57.905 40.909 0.00 0.00 0.00 2.93
929 1028 1.519455 CGTGGAGCTGATCGGAACC 60.519 63.158 5.48 8.04 0.00 3.62
942 1041 1.000233 CGGAACCGTGTCGTGTACAG 61.000 60.000 0.00 0.00 39.29 2.74
954 1053 2.963101 TCGTGTACAGGATATGGGAAGG 59.037 50.000 14.05 0.00 0.00 3.46
1026 1126 1.299541 GCACCAATACCATGGAGTCG 58.700 55.000 21.47 3.80 43.54 4.18
1047 1147 2.414824 GCGGATGGATCAGTACGAGATC 60.415 54.545 17.80 17.80 40.86 2.75
1092 1192 3.134127 GGTGCCGCCATTCTGGTC 61.134 66.667 0.00 0.00 40.46 4.02
1125 1225 4.330074 ACCGAGAAGAAAAAGTATGATGCG 59.670 41.667 0.00 0.00 0.00 4.73
1126 1226 4.566759 CCGAGAAGAAAAAGTATGATGCGA 59.433 41.667 0.00 0.00 0.00 5.10
1127 1227 5.063438 CCGAGAAGAAAAAGTATGATGCGAA 59.937 40.000 0.00 0.00 0.00 4.70
1128 1228 6.181255 CGAGAAGAAAAAGTATGATGCGAAG 58.819 40.000 0.00 0.00 0.00 3.79
1129 1229 6.035005 CGAGAAGAAAAAGTATGATGCGAAGA 59.965 38.462 0.00 0.00 0.00 2.87
1131 1231 8.273780 AGAAGAAAAAGTATGATGCGAAGATT 57.726 30.769 0.00 0.00 0.00 2.40
1132 1232 8.180267 AGAAGAAAAAGTATGATGCGAAGATTG 58.820 33.333 0.00 0.00 0.00 2.67
1133 1233 6.261118 AGAAAAAGTATGATGCGAAGATTGC 58.739 36.000 0.00 0.00 0.00 3.56
1152 1252 9.959721 AAGATTGCCTTCTTCTATTTAGTTACA 57.040 29.630 0.00 0.00 29.99 2.41
1156 1256 9.959721 TTGCCTTCTTCTATTTAGTTACAGAAT 57.040 29.630 0.00 0.00 0.00 2.40
1175 1275 5.770162 CAGAATACAGAGTTTGTTTCCCCTT 59.230 40.000 0.00 0.00 41.29 3.95
1209 1309 6.832900 TGGTTGATATATGATTGGTTTGCAGA 59.167 34.615 0.00 0.00 0.00 4.26
1236 1336 1.141881 GAAGAAGATCCGGCTCGCA 59.858 57.895 0.00 0.00 0.00 5.10
1295 1395 4.021016 AGAGGTTAGTGAAGCACGAGAAAT 60.021 41.667 0.00 0.00 39.64 2.17
1299 1399 5.277828 GGTTAGTGAAGCACGAGAAATTGTT 60.278 40.000 0.00 0.00 39.64 2.83
1310 1411 7.335924 AGCACGAGAAATTGTTAGGCTTTATTA 59.664 33.333 0.00 0.00 0.00 0.98
1344 1450 7.905604 TTAGTATTGTTGAACTGACAGATGG 57.094 36.000 10.08 0.00 0.00 3.51
1348 1454 3.141398 TGTTGAACTGACAGATGGAAGC 58.859 45.455 10.08 0.00 0.00 3.86
1373 1479 0.259647 TGCAGATGGCCCTTATTGCT 59.740 50.000 0.00 0.00 43.89 3.91
1391 1497 2.092968 TGCTCGCCTTCAACATCCTTAT 60.093 45.455 0.00 0.00 0.00 1.73
1465 1571 4.572985 GCATCTGCATATGCCTTTTGTA 57.427 40.909 24.54 3.35 45.31 2.41
1516 1628 1.204941 GAGTGACGACAGGGTTGCTAT 59.795 52.381 0.00 0.00 0.00 2.97
1525 1637 2.493278 ACAGGGTTGCTATGTTTGCATC 59.507 45.455 0.00 0.00 40.34 3.91
1553 1665 1.000607 GATACTGCGAAGGTGGCGATA 60.001 52.381 0.00 0.00 0.00 2.92
1584 1696 4.838904 AATTTACAGGTAGTGGGAGTCC 57.161 45.455 0.00 0.00 0.00 3.85
1593 1705 0.978146 AGTGGGAGTCCGGGAGATTG 60.978 60.000 0.00 0.00 35.24 2.67
1599 1711 2.084546 GAGTCCGGGAGATTGGTTTTG 58.915 52.381 0.00 0.00 0.00 2.44
1732 1857 9.981114 CTCCTTTTGTTTCATGTTTTAGGTAAT 57.019 29.630 0.00 0.00 0.00 1.89
1767 1892 4.640201 AGTGTGCTAACTGTTGTGAACAAT 59.360 37.500 2.69 3.76 41.61 2.71
1827 1952 3.743521 AGCTGTTGACTACTTGCATTCA 58.256 40.909 0.00 0.00 32.21 2.57
1903 2028 6.397272 TGTCATTTATTTCATCAAGCAACCC 58.603 36.000 0.00 0.00 0.00 4.11
1914 2041 3.386486 TCAAGCAACCCGTAATATAGCG 58.614 45.455 0.00 0.00 0.00 4.26
2001 2128 2.775890 AGTGCCTCACATTGACTCAAG 58.224 47.619 0.00 0.00 36.74 3.02
2060 2187 7.894376 ATGTTTCATTGCTGGAGTTTAAATG 57.106 32.000 0.00 0.00 0.00 2.32
2113 2240 3.939066 TGCTAAGACCTTAAAGGCAGAC 58.061 45.455 0.00 0.00 39.63 3.51
2117 2244 3.983044 AGACCTTAAAGGCAGACGATT 57.017 42.857 0.00 0.00 39.63 3.34
2223 2350 8.272545 TGAATCTTATATGTTAGCATGATGCC 57.727 34.615 14.72 0.00 46.52 4.40
2420 2547 8.764558 TGTCATATAGCCTAGTTTTTAACTGGA 58.235 33.333 4.72 0.00 41.99 3.86
2614 2744 0.037326 TAGAAAGTGCCTGCCGACTG 60.037 55.000 0.00 0.00 0.00 3.51
2647 2778 9.453325 GAAGGATAAGATTACTAGAACACTTCG 57.547 37.037 0.00 0.00 34.02 3.79
2661 2793 9.666626 CTAGAACACTTCGAAATAGTATGTAGG 57.333 37.037 0.00 0.00 34.02 3.18
2706 2838 7.338710 TGGAAGATATAGAAAACCTCAAGTGG 58.661 38.462 0.00 0.00 0.00 4.00
2749 2881 2.081462 GGTCACGAACCCAATGTAAGG 58.919 52.381 0.00 0.00 42.85 2.69
2750 2882 2.289819 GGTCACGAACCCAATGTAAGGA 60.290 50.000 0.00 0.00 42.85 3.36
2751 2883 2.740447 GTCACGAACCCAATGTAAGGAC 59.260 50.000 0.00 0.00 0.00 3.85
2752 2884 2.081462 CACGAACCCAATGTAAGGACC 58.919 52.381 0.00 0.00 0.00 4.46
2753 2885 1.700739 ACGAACCCAATGTAAGGACCA 59.299 47.619 0.00 0.00 0.00 4.02
2754 2886 2.307686 ACGAACCCAATGTAAGGACCAT 59.692 45.455 0.00 0.00 0.00 3.55
2755 2887 3.520317 ACGAACCCAATGTAAGGACCATA 59.480 43.478 0.00 0.00 0.00 2.74
2756 2888 3.875134 CGAACCCAATGTAAGGACCATAC 59.125 47.826 0.00 0.00 0.00 2.39
2757 2889 4.383770 CGAACCCAATGTAAGGACCATACT 60.384 45.833 8.28 0.00 0.00 2.12
2758 2890 5.163385 CGAACCCAATGTAAGGACCATACTA 60.163 44.000 8.28 0.00 0.00 1.82
2759 2891 6.463897 CGAACCCAATGTAAGGACCATACTAT 60.464 42.308 8.28 0.00 0.00 2.12
2760 2892 6.187727 ACCCAATGTAAGGACCATACTATG 57.812 41.667 8.28 6.89 0.00 2.23
2761 2893 5.670361 ACCCAATGTAAGGACCATACTATGT 59.330 40.000 8.28 0.00 0.00 2.29
2762 2894 6.159751 ACCCAATGTAAGGACCATACTATGTT 59.840 38.462 8.28 0.00 0.00 2.71
2763 2895 7.060421 CCCAATGTAAGGACCATACTATGTTT 58.940 38.462 8.28 0.00 0.00 2.83
2764 2896 7.559897 CCCAATGTAAGGACCATACTATGTTTT 59.440 37.037 8.28 0.00 0.00 2.43
2765 2897 8.966868 CCAATGTAAGGACCATACTATGTTTTT 58.033 33.333 8.28 0.00 0.00 1.94
2769 2901 9.675464 TGTAAGGACCATACTATGTTTTTAAGG 57.325 33.333 8.28 0.00 0.00 2.69
2770 2902 7.640597 AAGGACCATACTATGTTTTTAAGGC 57.359 36.000 0.00 0.00 0.00 4.35
2771 2903 5.820947 AGGACCATACTATGTTTTTAAGGCG 59.179 40.000 0.00 0.00 0.00 5.52
2772 2904 5.008316 GGACCATACTATGTTTTTAAGGCGG 59.992 44.000 0.00 0.00 0.00 6.13
2773 2905 5.503002 ACCATACTATGTTTTTAAGGCGGT 58.497 37.500 0.00 0.00 0.00 5.68
2774 2906 6.652053 ACCATACTATGTTTTTAAGGCGGTA 58.348 36.000 0.00 0.00 0.00 4.02
2775 2907 7.111466 ACCATACTATGTTTTTAAGGCGGTAA 58.889 34.615 0.00 0.00 0.00 2.85
2776 2908 7.281549 ACCATACTATGTTTTTAAGGCGGTAAG 59.718 37.037 0.00 0.00 0.00 2.34
2777 2909 7.255001 CCATACTATGTTTTTAAGGCGGTAAGG 60.255 40.741 0.00 0.00 0.00 2.69
2786 2918 3.196613 GGCGGTAAGGCGATCTAAG 57.803 57.895 0.00 0.00 35.04 2.18
2787 2919 0.319641 GGCGGTAAGGCGATCTAAGG 60.320 60.000 0.00 0.00 35.04 2.69
2788 2920 0.944788 GCGGTAAGGCGATCTAAGGC 60.945 60.000 0.00 0.00 0.00 4.35
2789 2921 0.663568 CGGTAAGGCGATCTAAGGCG 60.664 60.000 0.00 0.00 39.33 5.52
2795 2927 2.029666 CGATCTAAGGCGCTGGGG 59.970 66.667 7.64 0.00 0.00 4.96
2796 2928 2.427753 GATCTAAGGCGCTGGGGG 59.572 66.667 7.64 0.00 0.00 5.40
2868 3000 1.981256 CCTAAGGCGGGCATATTTGT 58.019 50.000 3.78 0.00 0.00 2.83
2869 3001 3.134574 CCTAAGGCGGGCATATTTGTA 57.865 47.619 3.78 0.00 0.00 2.41
2870 3002 3.482436 CCTAAGGCGGGCATATTTGTAA 58.518 45.455 3.78 0.00 0.00 2.41
2871 3003 3.502211 CCTAAGGCGGGCATATTTGTAAG 59.498 47.826 3.78 0.00 0.00 2.34
2872 3004 1.981256 AGGCGGGCATATTTGTAAGG 58.019 50.000 3.78 0.00 0.00 2.69
2873 3005 0.313987 GGCGGGCATATTTGTAAGGC 59.686 55.000 0.00 0.00 0.00 4.35
2874 3006 0.040425 GCGGGCATATTTGTAAGGCG 60.040 55.000 0.00 0.00 0.00 5.52
2875 3007 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.000 0.00 0.00 0.00 6.53
2876 3008 1.318576 GGGCATATTTGTAAGGCGCT 58.681 50.000 7.64 0.00 34.95 5.92
2877 3009 1.001378 GGGCATATTTGTAAGGCGCTG 60.001 52.381 7.64 0.00 34.95 5.18
2878 3010 1.001378 GGCATATTTGTAAGGCGCTGG 60.001 52.381 7.64 0.00 0.00 4.85
2879 3011 1.600413 GCATATTTGTAAGGCGCTGGC 60.600 52.381 7.64 0.00 38.90 4.85
2880 3012 0.944386 ATATTTGTAAGGCGCTGGCG 59.056 50.000 7.64 10.80 41.24 5.69
2881 3013 1.092921 TATTTGTAAGGCGCTGGCGG 61.093 55.000 16.61 0.00 41.24 6.13
2910 3042 4.014065 GCCTAAGCGTCGCCTAAG 57.986 61.111 14.86 8.78 0.00 2.18
2911 3043 2.238437 GCCTAAGCGTCGCCTAAGC 61.238 63.158 14.86 7.18 0.00 3.09
2921 3053 3.195698 GCCTAAGCGTCCAAGGCG 61.196 66.667 0.00 0.00 45.82 5.52
2922 3054 2.511600 CCTAAGCGTCCAAGGCGG 60.512 66.667 5.39 0.00 33.62 6.13
2923 3055 2.511600 CTAAGCGTCCAAGGCGGG 60.512 66.667 5.39 0.00 33.62 6.13
2924 3056 2.998480 TAAGCGTCCAAGGCGGGA 60.998 61.111 0.00 0.00 33.62 5.14
2991 3124 4.282496 AGTAGGGAAAGAGTGATCATCGT 58.718 43.478 0.00 0.00 0.00 3.73
3041 3174 8.280497 GCATTTGCATCTCCATTGAATAATTTC 58.720 33.333 0.00 0.00 41.59 2.17
3164 3416 2.095969 CGACTTTTGTGTGTGTGTGTGT 60.096 45.455 0.00 0.00 0.00 3.72
3172 3424 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3205 3459 5.865552 GCAATTTTCATGCACATGTCTAACT 59.134 36.000 10.27 0.00 43.29 2.24
3227 3481 7.187824 ACTTTGTGCTATAAGAGAAGGATGA 57.812 36.000 0.00 0.00 0.00 2.92
3236 3491 9.389755 GCTATAAGAGAAGGATGAGTTTCTTTT 57.610 33.333 0.00 0.00 33.97 2.27
3238 3493 8.800370 ATAAGAGAAGGATGAGTTTCTTTTCC 57.200 34.615 0.00 0.00 33.97 3.13
3239 3494 6.192970 AGAGAAGGATGAGTTTCTTTTCCA 57.807 37.500 0.00 0.00 33.97 3.53
3240 3495 6.237154 AGAGAAGGATGAGTTTCTTTTCCAG 58.763 40.000 0.00 0.00 33.97 3.86
3422 3677 9.400638 CGCAAATCCATGTTTACTTAAACTAAA 57.599 29.630 12.03 0.00 44.36 1.85
3476 3731 5.448654 TGCTGATTATTAGTTTCCCTGCAT 58.551 37.500 0.00 0.00 0.00 3.96
3504 3759 1.511850 TGTCGAATTGCTGGACTGTG 58.488 50.000 0.00 0.00 0.00 3.66
3505 3760 0.798776 GTCGAATTGCTGGACTGTGG 59.201 55.000 0.00 0.00 0.00 4.17
3506 3761 0.684535 TCGAATTGCTGGACTGTGGA 59.315 50.000 0.00 0.00 0.00 4.02
3507 3762 0.798776 CGAATTGCTGGACTGTGGAC 59.201 55.000 0.00 0.00 0.00 4.02
3508 3763 1.609061 CGAATTGCTGGACTGTGGACT 60.609 52.381 0.00 0.00 0.00 3.85
3509 3764 1.808945 GAATTGCTGGACTGTGGACTG 59.191 52.381 0.00 0.00 0.00 3.51
3510 3765 0.607489 ATTGCTGGACTGTGGACTGC 60.607 55.000 0.00 0.00 0.00 4.40
3611 3866 9.871238 TTCTCTTAAATGTTCATACTAGTGGAC 57.129 33.333 5.39 0.00 0.00 4.02
3819 4242 4.522789 GCATGGAAGTCTGGTTTTCCTTAA 59.477 41.667 0.00 0.00 42.67 1.85
4038 4466 3.713003 TCTGATGAGCTTCCTAGTCCAA 58.287 45.455 0.00 0.00 0.00 3.53
4071 4499 0.249280 GTTCCCGTTTTGGCTGTTGG 60.249 55.000 0.00 0.00 35.87 3.77
4152 4581 7.694388 CTGTAAGTTACTATGCGCATAGAAA 57.306 36.000 46.98 34.98 42.55 2.52
4164 4593 5.175127 TGCGCATAGAAATCTCACTACAAA 58.825 37.500 5.66 0.00 0.00 2.83
4426 4859 9.337396 AGTATACAATCAAGTGAAAGAAACACA 57.663 29.630 5.50 0.00 40.25 3.72
4671 5104 8.384718 ACTAACAACTCTAAGAGAGGAGACTAA 58.615 37.037 10.26 0.00 46.45 2.24
4690 5123 7.104290 AGACTAATAAGCTCAGGGTAAACAAC 58.896 38.462 0.00 0.00 0.00 3.32
4804 5237 6.929049 CCAGTGTAAAATCTAGTGAAGTGACA 59.071 38.462 0.00 0.00 0.00 3.58
4808 5241 7.387948 GTGTAAAATCTAGTGAAGTGACACCAT 59.612 37.037 0.84 0.00 41.12 3.55
4838 5271 2.883574 CAAAGGTCAACCGCGATACTA 58.116 47.619 8.23 0.00 42.08 1.82
5212 5645 1.909700 TGCAAAAAGCCCTTCTCGAT 58.090 45.000 0.00 0.00 44.83 3.59
5283 5716 2.204151 CCTCCAAGTCCCCTGGGT 60.204 66.667 12.71 0.00 32.96 4.51
5299 5732 4.716287 CCCTGGGTGGTAATCAAATGAAAT 59.284 41.667 3.97 0.00 0.00 2.17
5301 5734 6.108015 CCTGGGTGGTAATCAAATGAAATTG 58.892 40.000 0.00 0.00 36.10 2.32
5315 5748 2.971330 TGAAATTGGGCAATTCACAGGT 59.029 40.909 0.00 0.00 39.88 4.00
5317 5750 2.307496 ATTGGGCAATTCACAGGTGA 57.693 45.000 0.00 0.00 37.91 4.02
5334 5767 0.478072 TGAAATGTGCTCCACCCAGT 59.522 50.000 0.00 0.00 32.73 4.00
5338 5771 1.583556 ATGTGCTCCACCCAGTGATA 58.416 50.000 0.00 0.00 35.23 2.15
5355 5788 6.037610 CCAGTGATATAGCAACCAAAGAAGTC 59.962 42.308 0.00 0.00 0.00 3.01
5358 5791 6.595716 GTGATATAGCAACCAAAGAAGTCAGT 59.404 38.462 0.00 0.00 0.00 3.41
5363 5796 3.877508 GCAACCAAAGAAGTCAGTAGTGT 59.122 43.478 0.00 0.00 0.00 3.55
5378 5811 2.435372 AGTGTTTGCTCCAGTTCCAA 57.565 45.000 0.00 0.00 0.00 3.53
5388 5821 4.943705 TGCTCCAGTTCCAAGATTGATTAC 59.056 41.667 0.00 0.00 0.00 1.89
5399 5832 3.801698 AGATTGATTACGCTGACAGCAT 58.198 40.909 26.32 15.11 42.58 3.79
5431 5864 5.045359 TCTGAACCATCTGAACCTGATTCAT 60.045 40.000 0.00 0.00 46.37 2.57
5461 5894 3.530265 TGGATTCATCTTGCAAATGCC 57.470 42.857 0.00 5.47 41.18 4.40
5793 6226 6.360618 AGACAAAGGATCCAATTCTATCCAC 58.639 40.000 15.82 4.60 43.55 4.02
5798 6231 4.728860 AGGATCCAATTCTATCCACCAGTT 59.271 41.667 15.82 0.00 43.55 3.16
5866 6299 5.245531 ACATTATACATGTCATAAGGCCCG 58.754 41.667 0.00 0.00 0.00 6.13
5902 6335 1.284657 CGATGAGCAGGCAGTAACAG 58.715 55.000 0.00 0.00 0.00 3.16
5904 6337 0.987294 ATGAGCAGGCAGTAACAGGT 59.013 50.000 0.00 0.00 0.00 4.00
5906 6339 1.550524 TGAGCAGGCAGTAACAGGTAG 59.449 52.381 0.00 0.00 0.00 3.18
5955 6388 0.237235 TTGGCGAACTTTGCGATGTC 59.763 50.000 0.00 0.00 0.00 3.06
5976 6409 7.672983 TGTCATAAAAGAAGAAGTGGATGTC 57.327 36.000 0.00 0.00 0.00 3.06
6027 6460 2.130073 GACTTGTTGGTTCTGCCGCC 62.130 60.000 0.00 0.00 41.21 6.13
6069 6502 7.032580 CAGAAGATAATACTATCAGCCCGAAG 58.967 42.308 0.00 0.00 37.05 3.79
6087 6520 2.226962 AGCTGGCCAATTCAGATGTT 57.773 45.000 7.01 0.00 34.36 2.71
6113 6546 1.271840 TTGCCCGCTATCCCAGAAGT 61.272 55.000 0.00 0.00 0.00 3.01
6259 6719 1.032014 TCTGCTGGAAAACAACAGGC 58.968 50.000 0.00 0.00 42.28 4.85
6288 6748 4.329545 GCGGTGGTTCTGAGGCCA 62.330 66.667 5.01 0.00 0.00 5.36
6331 6791 1.491505 GCGAGAAACGGCTATCTGGC 61.492 60.000 0.00 3.26 39.60 4.85
6495 6960 9.025020 CCTCATTTCGTGTGCTATATGTATATC 57.975 37.037 0.00 0.00 0.00 1.63
6503 6968 7.576856 CGTGTGCTATATGTATATCAGTCCCAA 60.577 40.741 0.00 0.00 0.00 4.12
6509 6974 7.986085 ATATGTATATCAGTCCCAAGTTTGC 57.014 36.000 0.00 0.00 0.00 3.68
6512 6977 1.523758 ATCAGTCCCAAGTTTGCGTC 58.476 50.000 0.00 0.00 0.00 5.19
6513 6978 0.468226 TCAGTCCCAAGTTTGCGTCT 59.532 50.000 0.00 0.00 0.00 4.18
6514 6979 0.868406 CAGTCCCAAGTTTGCGTCTC 59.132 55.000 0.00 0.00 0.00 3.36
6516 6981 1.134220 AGTCCCAAGTTTGCGTCTCAA 60.134 47.619 0.00 0.00 0.00 3.02
6527 6992 1.648467 GCGTCTCAATGGTTCCCAGC 61.648 60.000 0.00 0.00 36.75 4.85
6633 7098 6.191657 AGGTATGCATATTGAAGATCCACA 57.808 37.500 10.16 0.00 0.00 4.17
6691 7342 1.464608 CGAGCGGATGTGTTTTCATGT 59.535 47.619 0.00 0.00 0.00 3.21
6703 7355 4.500477 GTGTTTTCATGTTTGCTGTCAGTC 59.500 41.667 0.93 0.00 0.00 3.51
6705 7357 4.556942 TTTCATGTTTGCTGTCAGTCTG 57.443 40.909 0.93 0.00 0.00 3.51
6710 7362 3.198068 TGTTTGCTGTCAGTCTGTTCTC 58.802 45.455 0.93 0.00 0.00 2.87
6741 7395 0.250467 CTCTTGTCACCCCACACAGG 60.250 60.000 0.00 0.00 37.03 4.00
6765 7419 6.017852 GGAGCAGTGTAAACTAATTATCCAGC 60.018 42.308 0.00 0.00 0.00 4.85
6773 7427 6.603940 AAACTAATTATCCAGCCAGCAAAA 57.396 33.333 0.00 0.00 0.00 2.44
6776 7430 7.186570 ACTAATTATCCAGCCAGCAAAATTT 57.813 32.000 0.00 0.00 0.00 1.82
6781 7435 2.029110 TCCAGCCAGCAAAATTTAGCAC 60.029 45.455 0.00 0.00 0.00 4.40
6783 7437 1.067635 AGCCAGCAAAATTTAGCACCG 60.068 47.619 0.00 0.00 0.00 4.94
6784 7438 1.994916 CCAGCAAAATTTAGCACCGG 58.005 50.000 0.00 0.00 0.00 5.28
6785 7439 1.543802 CCAGCAAAATTTAGCACCGGA 59.456 47.619 9.46 0.00 0.00 5.14
6786 7440 2.595386 CAGCAAAATTTAGCACCGGAC 58.405 47.619 9.46 0.00 0.00 4.79
6787 7441 2.030363 CAGCAAAATTTAGCACCGGACA 60.030 45.455 9.46 0.00 0.00 4.02
6808 7462 2.556189 AGGTAGCTGCATCTCATACTCG 59.444 50.000 3.61 0.00 0.00 4.18
6845 7506 1.531149 ACTTGTCGTTGCTCCATTTCG 59.469 47.619 0.00 0.00 0.00 3.46
6847 7508 1.588674 TGTCGTTGCTCCATTTCGTT 58.411 45.000 0.00 0.00 0.00 3.85
6874 7535 7.965107 CACTCTTATCAATTTCCAAGTAGTTGC 59.035 37.037 4.65 0.00 31.64 4.17
6891 7552 3.248171 CGCTAGACTTCGCCGTGC 61.248 66.667 0.00 0.00 0.00 5.34
6893 7554 1.519455 GCTAGACTTCGCCGTGCAT 60.519 57.895 0.00 0.00 0.00 3.96
6973 7651 1.526887 CTGTCGTCGTGCACTTGAAAT 59.473 47.619 16.19 0.00 0.00 2.17
6980 7658 2.480037 TCGTGCACTTGAAATAGCTGTG 59.520 45.455 16.19 0.00 0.00 3.66
7084 7767 1.139058 ACAGCATCGTATCACCCTTCC 59.861 52.381 0.00 0.00 0.00 3.46
7108 7791 0.169230 CGTCGTCCTCTCCTGTCAAG 59.831 60.000 0.00 0.00 0.00 3.02
7118 7814 6.370166 GTCCTCTCCTGTCAAGAAAATACAAG 59.630 42.308 0.00 0.00 0.00 3.16
7119 7815 6.043243 TCCTCTCCTGTCAAGAAAATACAAGT 59.957 38.462 0.00 0.00 0.00 3.16
7120 7816 7.234782 TCCTCTCCTGTCAAGAAAATACAAGTA 59.765 37.037 0.00 0.00 0.00 2.24
7121 7817 8.043710 CCTCTCCTGTCAAGAAAATACAAGTAT 58.956 37.037 0.00 0.00 0.00 2.12
7124 7820 9.653287 CTCCTGTCAAGAAAATACAAGTATACA 57.347 33.333 5.50 0.00 0.00 2.29
7127 7823 9.741168 CTGTCAAGAAAATACAAGTATACAACG 57.259 33.333 5.50 0.00 0.00 4.10
7128 7824 9.478768 TGTCAAGAAAATACAAGTATACAACGA 57.521 29.630 5.50 0.00 0.00 3.85
7131 7827 9.619727 CAAGAAAATACAAGTATACAACGATCG 57.380 33.333 14.88 14.88 0.00 3.69
7132 7828 8.922058 AGAAAATACAAGTATACAACGATCGT 57.078 30.769 16.60 16.60 0.00 3.73
7133 7829 9.017669 AGAAAATACAAGTATACAACGATCGTC 57.982 33.333 22.98 7.79 0.00 4.20
7134 7830 7.689953 AAATACAAGTATACAACGATCGTCC 57.310 36.000 22.98 5.63 0.00 4.79
7135 7831 3.688272 ACAAGTATACAACGATCGTCCG 58.312 45.455 22.98 17.86 0.00 4.79
7137 7833 1.945394 AGTATACAACGATCGTCCGCT 59.055 47.619 22.98 10.97 0.00 5.52
7138 7834 3.133691 AGTATACAACGATCGTCCGCTA 58.866 45.455 22.98 8.67 0.00 4.26
7139 7835 3.750130 AGTATACAACGATCGTCCGCTAT 59.250 43.478 22.98 14.79 0.00 2.97
7140 7836 4.931601 AGTATACAACGATCGTCCGCTATA 59.068 41.667 22.98 13.88 0.00 1.31
7141 7837 4.959596 ATACAACGATCGTCCGCTATAT 57.040 40.909 22.98 10.03 0.00 0.86
7142 7838 6.758416 AGTATACAACGATCGTCCGCTATATA 59.242 38.462 22.98 13.31 0.00 0.86
7143 7839 4.959596 ACAACGATCGTCCGCTATATAT 57.040 40.909 22.98 0.00 0.00 0.86
7144 7840 7.719778 ATACAACGATCGTCCGCTATATATA 57.280 36.000 22.98 0.00 0.00 0.86
7145 7841 6.615264 ACAACGATCGTCCGCTATATATAT 57.385 37.500 22.98 0.00 0.00 0.86
7146 7842 7.719778 ACAACGATCGTCCGCTATATATATA 57.280 36.000 22.98 2.49 0.00 0.86
7147 7843 8.320396 ACAACGATCGTCCGCTATATATATAT 57.680 34.615 22.98 10.10 0.00 0.86
7148 7844 9.428097 ACAACGATCGTCCGCTATATATATATA 57.572 33.333 22.98 11.21 0.00 0.86
7207 7903 2.158959 CATCGGTTCCTCGTGCGAC 61.159 63.158 0.00 0.00 0.00 5.19
7215 7911 2.502080 CTCGTGCGACTCGTGTCC 60.502 66.667 11.74 5.75 39.94 4.02
7344 8190 3.637273 GAGGTCCAGGTGGCCGTT 61.637 66.667 0.00 0.00 36.77 4.44
7345 8191 3.901797 GAGGTCCAGGTGGCCGTTG 62.902 68.421 0.00 0.00 36.77 4.10
7369 8215 2.432628 CGACGCTGTCCTGGTTCC 60.433 66.667 0.00 0.00 0.00 3.62
7373 8219 2.932234 CGCTGTCCTGGTTCCTCGT 61.932 63.158 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.051816 TCCAAATATCCGTACCGATTTGAC 58.948 41.667 13.74 0.00 40.25 3.18
30 31 7.174253 TCAGCATTAATTCCAAATATCCGTACC 59.826 37.037 0.00 0.00 0.00 3.34
45 46 4.207891 ACCACTCTCGTCAGCATTAATT 57.792 40.909 0.00 0.00 0.00 1.40
46 47 3.895232 ACCACTCTCGTCAGCATTAAT 57.105 42.857 0.00 0.00 0.00 1.40
57 58 4.421948 AGTAAGCGAATTAACCACTCTCG 58.578 43.478 0.00 0.00 0.00 4.04
63 64 7.636150 AGTAGTAGAGTAAGCGAATTAACCA 57.364 36.000 0.00 0.00 0.00 3.67
144 146 7.166691 ACGACAGTTTATATTGGTAGAGTGT 57.833 36.000 0.00 0.00 0.00 3.55
145 147 9.577110 TTTACGACAGTTTATATTGGTAGAGTG 57.423 33.333 0.00 0.00 0.00 3.51
223 225 0.464036 TGGCCGCCACTAGTGATTAG 59.536 55.000 24.68 8.43 35.39 1.73
224 226 1.128200 ATGGCCGCCACTAGTGATTA 58.872 50.000 24.68 4.76 35.80 1.75
225 227 0.464373 CATGGCCGCCACTAGTGATT 60.464 55.000 24.68 0.00 35.80 2.57
293 296 2.142356 TGCCTCTCTCTCTCTCCTTG 57.858 55.000 0.00 0.00 0.00 3.61
296 299 2.301346 CTCTTGCCTCTCTCTCTCTCC 58.699 57.143 0.00 0.00 0.00 3.71
297 300 1.678101 GCTCTTGCCTCTCTCTCTCTC 59.322 57.143 0.00 0.00 0.00 3.20
298 301 1.767759 GCTCTTGCCTCTCTCTCTCT 58.232 55.000 0.00 0.00 0.00 3.10
309 341 2.192608 CTGTTGGCTTCGCTCTTGCC 62.193 60.000 0.00 0.00 46.26 4.52
614 674 4.134187 CAACTGTACTGCCGCGCG 62.134 66.667 25.67 25.67 0.00 6.86
718 778 5.215903 CAGTACTAATCATCTAGGCACACG 58.784 45.833 0.00 0.00 0.00 4.49
753 813 9.614792 ATTTACTTCAGACAAGAACAGTAAACT 57.385 29.630 4.82 0.00 34.16 2.66
774 869 8.611654 TCCTGAACACCTACTTGTTTATTTAC 57.388 34.615 0.00 0.00 39.88 2.01
786 881 6.235231 TCCAATAGAATCCTGAACACCTAC 57.765 41.667 0.00 0.00 0.00 3.18
795 890 5.068636 CCTGTTCCATCCAATAGAATCCTG 58.931 45.833 0.00 0.00 0.00 3.86
819 914 3.257127 TCGAATTTGATCAAAACCCACCC 59.743 43.478 23.91 7.96 33.56 4.61
821 916 3.920412 GCTCGAATTTGATCAAAACCCAC 59.080 43.478 23.91 12.38 33.56 4.61
822 917 3.365868 CGCTCGAATTTGATCAAAACCCA 60.366 43.478 23.91 8.65 33.56 4.51
823 918 3.171277 CGCTCGAATTTGATCAAAACCC 58.829 45.455 23.91 14.37 33.56 4.11
824 919 2.594214 GCGCTCGAATTTGATCAAAACC 59.406 45.455 23.91 16.57 33.56 3.27
826 921 3.550950 TGCGCTCGAATTTGATCAAAA 57.449 38.095 23.91 7.48 33.56 2.44
833 928 4.062183 GCCTTGCGCTCGAATTTG 57.938 55.556 9.73 0.00 0.00 2.32
864 959 3.836949 ACAAACAAGCATAAATCAGCCG 58.163 40.909 0.00 0.00 0.00 5.52
884 979 2.854185 GGCGATTTCTGCAAAAGCATAC 59.146 45.455 9.25 0.87 33.35 2.39
929 1028 2.543031 CCCATATCCTGTACACGACACG 60.543 54.545 0.00 0.00 33.31 4.49
942 1041 4.741928 ATACCCAAACCTTCCCATATCC 57.258 45.455 0.00 0.00 0.00 2.59
954 1053 7.279981 GCAAAATTCAATCCCTAATACCCAAAC 59.720 37.037 0.00 0.00 0.00 2.93
1009 1109 0.179084 CGCGACTCCATGGTATTGGT 60.179 55.000 12.58 4.35 38.01 3.67
1010 1110 0.880278 CCGCGACTCCATGGTATTGG 60.880 60.000 12.58 3.96 38.18 3.16
1011 1111 0.104120 TCCGCGACTCCATGGTATTG 59.896 55.000 12.58 6.27 0.00 1.90
1012 1112 1.048601 ATCCGCGACTCCATGGTATT 58.951 50.000 12.58 0.00 0.00 1.89
1013 1113 0.318441 CATCCGCGACTCCATGGTAT 59.682 55.000 12.58 0.12 0.00 2.73
1014 1114 1.739667 CATCCGCGACTCCATGGTA 59.260 57.895 12.58 0.00 0.00 3.25
1026 1126 0.952280 TCTCGTACTGATCCATCCGC 59.048 55.000 0.00 0.00 0.00 5.54
1047 1147 2.842256 GCGGCCAATCTGCTCCATG 61.842 63.158 2.24 0.00 43.74 3.66
1092 1192 2.526304 TCTTCTCGGTCTTGTGGTTG 57.474 50.000 0.00 0.00 0.00 3.77
1126 1226 9.959721 TGTAACTAAATAGAAGAAGGCAATCTT 57.040 29.630 5.39 5.39 42.24 2.40
1127 1227 9.606631 CTGTAACTAAATAGAAGAAGGCAATCT 57.393 33.333 0.00 0.00 0.00 2.40
1128 1228 9.601217 TCTGTAACTAAATAGAAGAAGGCAATC 57.399 33.333 0.00 0.00 0.00 2.67
1129 1229 9.959721 TTCTGTAACTAAATAGAAGAAGGCAAT 57.040 29.630 0.00 0.00 0.00 3.56
1152 1252 5.584551 AGGGGAAACAAACTCTGTATTCT 57.415 39.130 0.00 0.00 37.23 2.40
1156 1256 6.902408 TCTTTAAGGGGAAACAAACTCTGTA 58.098 36.000 0.00 0.00 37.23 2.74
1157 1257 5.762279 TCTTTAAGGGGAAACAAACTCTGT 58.238 37.500 0.00 0.00 41.27 3.41
1159 1259 6.961360 CTTCTTTAAGGGGAAACAAACTCT 57.039 37.500 0.00 0.00 0.00 3.24
1175 1275 9.573166 CCAATCATATATCAACCACCTTCTTTA 57.427 33.333 0.00 0.00 0.00 1.85
1209 1309 3.805108 GCCGGATCTTCTTCAGCACATAT 60.805 47.826 5.05 0.00 0.00 1.78
1236 1336 2.345244 CACCGCTCTGTCTGCCTT 59.655 61.111 0.00 0.00 0.00 4.35
1260 1360 4.713814 TCACTAACCTCTTGATGAGCAGAT 59.286 41.667 0.00 0.00 41.35 2.90
1317 1418 9.154847 CATCTGTCAGTTCAACAATACTAATCA 57.845 33.333 0.00 0.00 0.00 2.57
1329 1430 3.490439 TGCTTCCATCTGTCAGTTCAA 57.510 42.857 0.00 0.00 0.00 2.69
1348 1454 2.773993 AAGGGCCATCTGCAATTTTG 57.226 45.000 6.18 0.00 43.89 2.44
1373 1479 4.161565 ACAGTATAAGGATGTTGAAGGCGA 59.838 41.667 0.00 0.00 0.00 5.54
1391 1497 4.365514 TGCCTCCTTGAATTCAACAGTA 57.634 40.909 16.91 3.23 0.00 2.74
1449 1555 7.163001 TGTAACAATACAAAAGGCATATGCA 57.837 32.000 28.07 7.06 39.89 3.96
1454 1560 8.034804 GGAAAGATGTAACAATACAAAAGGCAT 58.965 33.333 0.00 0.00 44.81 4.40
1465 1571 5.184892 AGCCAGAGGAAAGATGTAACAAT 57.815 39.130 0.00 0.00 0.00 2.71
1516 1628 0.321210 ATCCCGTCACGATGCAAACA 60.321 50.000 0.00 0.00 0.00 2.83
1525 1637 0.866061 CTTCGCAGTATCCCGTCACG 60.866 60.000 0.00 0.00 0.00 4.35
1553 1665 7.103641 CCACTACCTGTAAATTACACTCACAT 58.896 38.462 1.08 0.00 34.46 3.21
1584 1696 1.960689 ACAACCAAAACCAATCTCCCG 59.039 47.619 0.00 0.00 0.00 5.14
1593 1705 4.450082 AACAGAGTCAACAACCAAAACC 57.550 40.909 0.00 0.00 0.00 3.27
1599 1711 5.389411 GCAAAACAAAACAGAGTCAACAACC 60.389 40.000 0.00 0.00 0.00 3.77
1732 1857 6.108687 CAGTTAGCACACTTCTGGATATTGA 58.891 40.000 0.00 0.00 0.00 2.57
1739 1864 3.002656 CACAACAGTTAGCACACTTCTGG 59.997 47.826 0.00 0.00 33.67 3.86
1827 1952 2.295070 GTCCCGGTGCAAAACATAGTTT 59.705 45.455 0.00 0.00 0.00 2.66
1888 2013 6.017440 GCTATATTACGGGTTGCTTGATGAAA 60.017 38.462 0.00 0.00 0.00 2.69
1903 2028 3.979495 GGACAAGGACACGCTATATTACG 59.021 47.826 0.00 0.00 0.00 3.18
1914 2041 1.876156 CTGCAGAAAGGACAAGGACAC 59.124 52.381 8.42 0.00 0.00 3.67
2001 2128 8.956014 GCAGACGTAATACAAGATAAGAGTTAC 58.044 37.037 0.00 0.00 0.00 2.50
2039 2166 7.231317 AGAGACATTTAAACTCCAGCAATGAAA 59.769 33.333 0.00 0.00 0.00 2.69
2060 2187 3.514309 TCCCCTGCAAGTAAACTAGAGAC 59.486 47.826 0.00 0.00 0.00 3.36
2113 2240 5.968387 AGCTTACCGAAGATGTTAAATCG 57.032 39.130 0.00 0.00 34.25 3.34
2117 2244 6.100004 CAGAGAAGCTTACCGAAGATGTTAA 58.900 40.000 0.00 0.00 34.25 2.01
2223 2350 4.204012 TGGTGTTCCAACAACCTAAGAAG 58.796 43.478 5.03 0.00 45.93 2.85
2420 2547 8.486210 ACATACAACATCCTGTACAGACATATT 58.514 33.333 24.68 8.30 34.68 1.28
2614 2744 8.596781 TCTAGTAATCTTATCCTTCTATGGGC 57.403 38.462 0.00 0.00 0.00 5.36
2706 2838 5.634859 CCATTTGTAATGCCACAAGAAAGTC 59.365 40.000 0.00 0.00 39.46 3.01
2748 2880 5.008316 CCGCCTTAAAAACATAGTATGGTCC 59.992 44.000 14.59 0.00 33.60 4.46
2749 2881 5.587443 ACCGCCTTAAAAACATAGTATGGTC 59.413 40.000 14.59 0.00 33.60 4.02
2750 2882 5.503002 ACCGCCTTAAAAACATAGTATGGT 58.497 37.500 14.59 4.82 33.60 3.55
2751 2883 7.255001 CCTTACCGCCTTAAAAACATAGTATGG 60.255 40.741 14.59 0.00 33.60 2.74
2752 2884 7.636326 CCTTACCGCCTTAAAAACATAGTATG 58.364 38.462 8.66 8.66 0.00 2.39
2753 2885 6.261603 GCCTTACCGCCTTAAAAACATAGTAT 59.738 38.462 0.00 0.00 0.00 2.12
2754 2886 5.585844 GCCTTACCGCCTTAAAAACATAGTA 59.414 40.000 0.00 0.00 0.00 1.82
2755 2887 4.397103 GCCTTACCGCCTTAAAAACATAGT 59.603 41.667 0.00 0.00 0.00 2.12
2756 2888 4.495184 CGCCTTACCGCCTTAAAAACATAG 60.495 45.833 0.00 0.00 0.00 2.23
2757 2889 3.374678 CGCCTTACCGCCTTAAAAACATA 59.625 43.478 0.00 0.00 0.00 2.29
2758 2890 2.162809 CGCCTTACCGCCTTAAAAACAT 59.837 45.455 0.00 0.00 0.00 2.71
2759 2891 1.536331 CGCCTTACCGCCTTAAAAACA 59.464 47.619 0.00 0.00 0.00 2.83
2760 2892 1.805943 TCGCCTTACCGCCTTAAAAAC 59.194 47.619 0.00 0.00 0.00 2.43
2761 2893 2.181954 TCGCCTTACCGCCTTAAAAA 57.818 45.000 0.00 0.00 0.00 1.94
2762 2894 2.093341 AGATCGCCTTACCGCCTTAAAA 60.093 45.455 0.00 0.00 0.00 1.52
2763 2895 1.483415 AGATCGCCTTACCGCCTTAAA 59.517 47.619 0.00 0.00 0.00 1.52
2764 2896 1.117150 AGATCGCCTTACCGCCTTAA 58.883 50.000 0.00 0.00 0.00 1.85
2765 2897 1.985473 TAGATCGCCTTACCGCCTTA 58.015 50.000 0.00 0.00 0.00 2.69
2766 2898 1.068741 CTTAGATCGCCTTACCGCCTT 59.931 52.381 0.00 0.00 0.00 4.35
2767 2899 0.674534 CTTAGATCGCCTTACCGCCT 59.325 55.000 0.00 0.00 0.00 5.52
2768 2900 0.319641 CCTTAGATCGCCTTACCGCC 60.320 60.000 0.00 0.00 0.00 6.13
2769 2901 0.944788 GCCTTAGATCGCCTTACCGC 60.945 60.000 0.00 0.00 0.00 5.68
2770 2902 0.663568 CGCCTTAGATCGCCTTACCG 60.664 60.000 0.00 0.00 0.00 4.02
2771 2903 0.944788 GCGCCTTAGATCGCCTTACC 60.945 60.000 0.00 0.00 45.01 2.85
2772 2904 2.518711 GCGCCTTAGATCGCCTTAC 58.481 57.895 0.00 0.00 45.01 2.34
2778 2910 2.029666 CCCCAGCGCCTTAGATCG 59.970 66.667 2.29 0.00 0.00 3.69
2779 2911 2.427753 CCCCCAGCGCCTTAGATC 59.572 66.667 2.29 0.00 0.00 2.75
2849 2981 1.981256 ACAAATATGCCCGCCTTAGG 58.019 50.000 0.00 0.00 0.00 2.69
2850 2982 3.502211 CCTTACAAATATGCCCGCCTTAG 59.498 47.826 0.00 0.00 0.00 2.18
2851 2983 3.482436 CCTTACAAATATGCCCGCCTTA 58.518 45.455 0.00 0.00 0.00 2.69
2852 2984 2.306847 CCTTACAAATATGCCCGCCTT 58.693 47.619 0.00 0.00 0.00 4.35
2853 2985 1.981256 CCTTACAAATATGCCCGCCT 58.019 50.000 0.00 0.00 0.00 5.52
2854 2986 0.313987 GCCTTACAAATATGCCCGCC 59.686 55.000 0.00 0.00 0.00 6.13
2855 2987 0.040425 CGCCTTACAAATATGCCCGC 60.040 55.000 0.00 0.00 0.00 6.13
2856 2988 0.040425 GCGCCTTACAAATATGCCCG 60.040 55.000 0.00 0.00 0.00 6.13
2857 2989 1.001378 CAGCGCCTTACAAATATGCCC 60.001 52.381 2.29 0.00 0.00 5.36
2858 2990 1.001378 CCAGCGCCTTACAAATATGCC 60.001 52.381 2.29 0.00 0.00 4.40
2859 2991 1.600413 GCCAGCGCCTTACAAATATGC 60.600 52.381 2.29 0.00 0.00 3.14
2860 2992 1.334059 CGCCAGCGCCTTACAAATATG 60.334 52.381 2.29 0.00 0.00 1.78
2861 2993 0.944386 CGCCAGCGCCTTACAAATAT 59.056 50.000 2.29 0.00 0.00 1.28
2862 2994 1.092921 CCGCCAGCGCCTTACAAATA 61.093 55.000 2.29 0.00 38.24 1.40
2863 2995 2.406616 CCGCCAGCGCCTTACAAAT 61.407 57.895 2.29 0.00 38.24 2.32
2864 2996 3.053291 CCGCCAGCGCCTTACAAA 61.053 61.111 2.29 0.00 38.24 2.83
2893 3025 2.238437 GCTTAGGCGACGCTTAGGC 61.238 63.158 25.71 25.71 36.29 3.93
2894 3026 4.014065 GCTTAGGCGACGCTTAGG 57.986 61.111 20.77 17.82 0.00 2.69
2905 3037 2.511600 CCGCCTTGGACGCTTAGG 60.512 66.667 0.00 0.00 42.00 2.69
2906 3038 2.511600 CCCGCCTTGGACGCTTAG 60.512 66.667 0.00 0.00 42.00 2.18
2907 3039 2.998480 TCCCGCCTTGGACGCTTA 60.998 61.111 0.00 0.00 42.00 3.09
2908 3040 4.699522 GTCCCGCCTTGGACGCTT 62.700 66.667 0.00 0.00 44.98 4.68
2920 3052 1.463444 CTCTGTTTTTAAGGCGTCCCG 59.537 52.381 0.00 0.00 35.76 5.14
2921 3053 1.810755 CCTCTGTTTTTAAGGCGTCCC 59.189 52.381 0.00 0.00 0.00 4.46
2922 3054 1.810755 CCCTCTGTTTTTAAGGCGTCC 59.189 52.381 0.00 0.00 0.00 4.79
2923 3055 2.483106 GTCCCTCTGTTTTTAAGGCGTC 59.517 50.000 0.00 0.00 0.00 5.19
2924 3056 2.501261 GTCCCTCTGTTTTTAAGGCGT 58.499 47.619 0.00 0.00 0.00 5.68
2925 3057 1.810755 GGTCCCTCTGTTTTTAAGGCG 59.189 52.381 0.00 0.00 0.00 5.52
2926 3058 2.871453 TGGTCCCTCTGTTTTTAAGGC 58.129 47.619 0.00 0.00 0.00 4.35
2927 3059 5.594317 CCATATGGTCCCTCTGTTTTTAAGG 59.406 44.000 14.09 0.00 0.00 2.69
2928 3060 5.067805 GCCATATGGTCCCTCTGTTTTTAAG 59.932 44.000 22.79 0.00 37.57 1.85
2929 3061 4.953579 GCCATATGGTCCCTCTGTTTTTAA 59.046 41.667 22.79 0.00 37.57 1.52
2930 3062 4.229582 AGCCATATGGTCCCTCTGTTTTTA 59.770 41.667 22.79 0.00 37.57 1.52
2931 3063 3.011708 AGCCATATGGTCCCTCTGTTTTT 59.988 43.478 22.79 0.00 37.57 1.94
2932 3064 2.582636 AGCCATATGGTCCCTCTGTTTT 59.417 45.455 22.79 0.00 37.57 2.43
2933 3065 2.208872 AGCCATATGGTCCCTCTGTTT 58.791 47.619 22.79 0.00 37.57 2.83
2934 3066 1.898863 AGCCATATGGTCCCTCTGTT 58.101 50.000 22.79 0.00 37.57 3.16
2935 3067 1.771255 GAAGCCATATGGTCCCTCTGT 59.229 52.381 22.79 2.92 37.57 3.41
2936 3068 1.072965 GGAAGCCATATGGTCCCTCTG 59.927 57.143 22.79 0.00 37.57 3.35
2937 3069 1.345422 TGGAAGCCATATGGTCCCTCT 60.345 52.381 22.61 10.19 37.57 3.69
2938 3070 1.072965 CTGGAAGCCATATGGTCCCTC 59.927 57.143 22.61 14.31 37.57 4.30
2939 3071 1.143813 CTGGAAGCCATATGGTCCCT 58.856 55.000 22.61 10.83 37.57 4.20
2940 3072 3.733709 CTGGAAGCCATATGGTCCC 57.266 57.895 22.61 19.78 37.57 4.46
2991 3124 3.138283 ACAACCTCTCAAATGGAAGGTGA 59.862 43.478 7.96 0.00 37.21 4.02
3073 3325 2.103432 TGTCGAGTGGTTTTCCTTAGCA 59.897 45.455 0.00 0.00 41.38 3.49
3172 3424 3.096501 GAAAATTGCGCGCGTGCA 61.097 55.556 40.51 40.51 44.61 4.57
3205 3459 7.187824 ACTCATCCTTCTCTTATAGCACAAA 57.812 36.000 0.00 0.00 0.00 2.83
3227 3481 9.178758 GTATGGTATGAATCTGGAAAAGAAACT 57.821 33.333 0.00 0.00 38.79 2.66
3389 3644 7.209471 AGTAAACATGGATTTGCGTAAAAGA 57.791 32.000 1.94 0.00 30.35 2.52
3476 3731 5.918011 GTCCAGCAATTCGACAAAAATAACA 59.082 36.000 0.00 0.00 0.00 2.41
3633 3888 9.705290 AGCTTTTACAATTTCGAAACCAATAAT 57.295 25.926 13.81 0.00 0.00 1.28
4071 4499 3.552604 TGATAAGCGTTTTCCTGCAAC 57.447 42.857 0.00 0.00 0.00 4.17
4152 4581 6.597562 TGGTAAACAGGTTTTGTAGTGAGAT 58.402 36.000 2.37 0.00 39.73 2.75
4164 4593 7.754851 ATCGAGTAAATTTGGTAAACAGGTT 57.245 32.000 0.00 0.00 0.00 3.50
4426 4859 2.436173 GGAACTTGTAGCTAGCCCTGAT 59.564 50.000 12.13 0.00 0.00 2.90
4671 5104 5.246307 GTGAGTTGTTTACCCTGAGCTTAT 58.754 41.667 0.00 0.00 0.00 1.73
4838 5271 5.503927 AGGAGATGCTTGTATGTGTTTCAT 58.496 37.500 0.00 0.00 40.25 2.57
4941 5374 1.483827 GACTGCAGGACATGATCAGGA 59.516 52.381 19.93 0.00 0.00 3.86
4942 5375 1.805495 CGACTGCAGGACATGATCAGG 60.805 57.143 19.93 5.68 0.00 3.86
5126 5559 0.902048 TGGACTCTCTGCTCCCACTG 60.902 60.000 0.00 0.00 0.00 3.66
5274 5707 1.761711 TTTGATTACCACCCAGGGGA 58.238 50.000 11.37 0.00 43.89 4.81
5283 5716 5.752036 TGCCCAATTTCATTTGATTACCA 57.248 34.783 0.00 0.00 0.00 3.25
5299 5732 2.079170 TTCACCTGTGAATTGCCCAA 57.921 45.000 8.58 0.00 43.90 4.12
5315 5748 0.478072 ACTGGGTGGAGCACATTTCA 59.522 50.000 0.00 0.00 35.86 2.69
5317 5750 0.478072 TCACTGGGTGGAGCACATTT 59.522 50.000 0.00 0.00 35.86 2.32
5334 5767 6.711277 ACTGACTTCTTTGGTTGCTATATCA 58.289 36.000 0.00 0.00 0.00 2.15
5338 5771 5.934625 CACTACTGACTTCTTTGGTTGCTAT 59.065 40.000 0.00 0.00 0.00 2.97
5355 5788 2.808543 GGAACTGGAGCAAACACTACTG 59.191 50.000 0.00 0.00 0.00 2.74
5358 5791 3.135712 TCTTGGAACTGGAGCAAACACTA 59.864 43.478 0.00 0.00 0.00 2.74
5363 5796 3.831323 TCAATCTTGGAACTGGAGCAAA 58.169 40.909 0.00 0.00 0.00 3.68
5378 5811 3.251479 TGCTGTCAGCGTAATCAATCT 57.749 42.857 19.68 0.00 46.26 2.40
5388 5821 1.424240 CTGCTTGATGCTGTCAGCG 59.576 57.895 19.68 6.34 46.26 5.18
5399 5832 2.634453 TCAGATGGTTCAGACTGCTTGA 59.366 45.455 0.00 0.00 0.00 3.02
5431 5864 4.462483 GCAAGATGAATCCAAGTGGGTTAA 59.538 41.667 0.00 0.00 38.97 2.01
5461 5894 2.282462 GGCAGTGTCCAGGGTTGG 60.282 66.667 0.00 0.00 46.49 3.77
5793 6226 5.738909 ACTGGTGATTTCTCTGATAACTGG 58.261 41.667 0.00 0.00 0.00 4.00
5798 6231 5.721480 TGAGGAACTGGTGATTTCTCTGATA 59.279 40.000 0.00 0.00 41.55 2.15
5866 6299 2.558313 GCTGACGCTGAAACTGCC 59.442 61.111 0.00 0.00 0.00 4.85
5902 6335 1.745653 GGCTTCCATTTCAGCACTACC 59.254 52.381 0.00 0.00 37.81 3.18
5904 6337 1.354031 TGGGCTTCCATTTCAGCACTA 59.646 47.619 0.00 0.00 40.40 2.74
5906 6339 0.968405 TTGGGCTTCCATTTCAGCAC 59.032 50.000 0.00 0.00 40.80 4.40
5955 6388 7.912056 TCTGACATCCACTTCTTCTTTTATG 57.088 36.000 0.00 0.00 0.00 1.90
5976 6409 2.775890 AGACTTGGTGTGATGCTTCTG 58.224 47.619 0.88 0.00 0.00 3.02
6027 6460 1.879380 TCTGAAATGTTGGGCTTCACG 59.121 47.619 0.00 0.00 0.00 4.35
6063 6496 1.660560 CTGAATTGGCCAGCTTCGGG 61.661 60.000 22.50 14.99 0.00 5.14
6069 6502 1.547372 ACAACATCTGAATTGGCCAGC 59.453 47.619 5.11 0.00 0.00 4.85
6072 6505 6.402442 GCAATTTTACAACATCTGAATTGGCC 60.402 38.462 0.00 0.00 35.88 5.36
6087 6520 2.303175 GGGATAGCGGGCAATTTTACA 58.697 47.619 0.00 0.00 0.00 2.41
6113 6546 4.080863 GGGTCTCCAGAGAAGCAGAATTTA 60.081 45.833 0.00 0.00 39.48 1.40
6121 6554 4.136978 TGGGGTCTCCAGAGAAGC 57.863 61.111 0.00 0.00 41.46 3.86
6128 6561 1.065410 TTCCTTTGCTGGGGTCTCCA 61.065 55.000 0.00 0.00 44.79 3.86
6192 6652 1.735376 GAGCCTCGGATCGTTGCCTA 61.735 60.000 0.00 0.00 0.00 3.93
6259 6719 2.435586 CACCGCAAGCTCCTCCAG 60.436 66.667 0.00 0.00 0.00 3.86
6288 6748 1.078426 CACCTTCGCCTTCCCGAAT 60.078 57.895 0.00 0.00 45.03 3.34
6331 6791 1.615392 CCCTTGAAAACTTCTGGCCAG 59.385 52.381 27.87 27.87 0.00 4.85
6443 6907 3.001939 CGTGAGGTGGTCAAACTTTACAC 59.998 47.826 0.00 0.00 36.74 2.90
6495 6960 0.868406 GAGACGCAAACTTGGGACTG 59.132 55.000 14.21 0.00 43.47 3.51
6503 6968 1.880027 GGAACCATTGAGACGCAAACT 59.120 47.619 0.00 0.00 40.48 2.66
6640 7105 5.507482 GGCGAGTGTGATAGACAGCTAAATA 60.507 44.000 0.00 0.00 34.28 1.40
6641 7106 4.363999 GCGAGTGTGATAGACAGCTAAAT 58.636 43.478 0.00 0.00 34.28 1.40
6642 7107 3.428999 GGCGAGTGTGATAGACAGCTAAA 60.429 47.826 0.00 0.00 34.28 1.85
6643 7108 2.099263 GGCGAGTGTGATAGACAGCTAA 59.901 50.000 0.00 0.00 34.28 3.09
6646 7111 0.528684 GGGCGAGTGTGATAGACAGC 60.529 60.000 0.00 0.00 34.28 4.40
6651 7301 0.389391 AATCCGGGCGAGTGTGATAG 59.611 55.000 0.00 0.00 0.00 2.08
6657 7307 2.278857 CTCGAATCCGGGCGAGTG 60.279 66.667 24.44 9.47 46.43 3.51
6675 7325 3.426191 CAGCAAACATGAAAACACATCCG 59.574 43.478 0.00 0.00 0.00 4.18
6691 7342 2.435805 AGGAGAACAGACTGACAGCAAA 59.564 45.455 10.08 0.00 0.00 3.68
6741 7395 6.017852 GGCTGGATAATTAGTTTACACTGCTC 60.018 42.308 0.00 0.00 34.06 4.26
6765 7419 1.543802 TCCGGTGCTAAATTTTGCTGG 59.456 47.619 22.10 19.67 0.00 4.85
6781 7435 1.227380 GATGCAGCTACCTGTCCGG 60.227 63.158 0.00 0.00 41.26 5.14
6783 7437 0.826715 TGAGATGCAGCTACCTGTCC 59.173 55.000 3.45 0.00 41.26 4.02
6784 7438 2.906691 ATGAGATGCAGCTACCTGTC 57.093 50.000 3.45 0.00 41.26 3.51
6785 7439 3.303938 AGTATGAGATGCAGCTACCTGT 58.696 45.455 3.45 0.00 41.26 4.00
6786 7440 3.611293 CGAGTATGAGATGCAGCTACCTG 60.611 52.174 3.45 0.00 42.13 4.00
6787 7441 2.556189 CGAGTATGAGATGCAGCTACCT 59.444 50.000 3.45 0.00 0.00 3.08
6791 7445 1.697284 TCCGAGTATGAGATGCAGCT 58.303 50.000 2.90 2.90 0.00 4.24
6808 7462 4.712476 ACAAGTGATAGCATCAGGAATCC 58.288 43.478 0.00 0.00 40.53 3.01
6845 7506 9.220767 ACTACTTGGAAATTGATAAGAGTGAAC 57.779 33.333 0.00 0.00 0.00 3.18
6847 7508 9.219603 CAACTACTTGGAAATTGATAAGAGTGA 57.780 33.333 0.00 0.00 0.00 3.41
6874 7535 3.248171 GCACGGCGAAGTCTAGCG 61.248 66.667 16.62 0.00 0.00 4.26
6887 7548 0.869068 TACAACCGTGGAAATGCACG 59.131 50.000 18.77 18.77 43.57 5.34
6889 7550 1.240256 GGTACAACCGTGGAAATGCA 58.760 50.000 0.00 0.00 0.00 3.96
6891 7552 2.081462 GAGGGTACAACCGTGGAAATG 58.919 52.381 0.00 0.00 39.83 2.32
6893 7554 1.071071 CAGAGGGTACAACCGTGGAAA 59.929 52.381 0.00 0.00 39.83 3.13
6980 7658 2.125350 AAGGCTCGTAGCTGCAGC 60.125 61.111 31.53 31.53 41.99 5.25
7084 7767 0.387367 CAGGAGAGGACGACGTTGTG 60.387 60.000 14.59 0.00 0.00 3.33
7108 7791 8.264632 GGACGATCGTTGTATACTTGTATTTTC 58.735 37.037 23.63 2.25 0.00 2.29
7118 7814 2.396160 AGCGGACGATCGTTGTATAC 57.604 50.000 23.63 8.06 0.00 1.47
7119 7815 7.719778 ATATATAGCGGACGATCGTTGTATA 57.280 36.000 23.63 17.13 35.68 1.47
7120 7816 4.959596 ATATAGCGGACGATCGTTGTAT 57.040 40.909 23.63 17.23 0.00 2.29
7121 7817 7.719778 ATATATATAGCGGACGATCGTTGTA 57.280 36.000 23.63 9.31 0.00 2.41
7122 7818 4.959596 ATATATAGCGGACGATCGTTGT 57.040 40.909 23.63 7.18 0.00 3.32
7182 7878 3.119101 GCACGAGGAACCGATGGATATAT 60.119 47.826 0.00 0.00 0.00 0.86
7184 7880 1.000955 GCACGAGGAACCGATGGATAT 59.999 52.381 0.00 0.00 0.00 1.63
7198 7894 2.502080 GGACACGAGTCGCACGAG 60.502 66.667 13.59 0.15 45.92 4.18
7328 8174 3.953775 CAACGGCCACCTGGACCT 61.954 66.667 2.24 0.00 41.34 3.85
7366 8212 1.577922 CCGTCGAGTTCACGAGGAA 59.422 57.895 12.15 0.00 46.37 3.36
7369 8215 2.870161 CGCCGTCGAGTTCACGAG 60.870 66.667 0.00 0.00 42.88 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.