Multiple sequence alignment - TraesCS3A01G375500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G375500 chr3A 100.000 2777 0 0 1 2777 624828372 624831148 0.000000e+00 5129.0
1 TraesCS3A01G375500 chr3A 87.500 128 16 0 1586 1713 616492652 616492525 6.200000e-32 148.0
2 TraesCS3A01G375500 chr3D 86.812 1835 120 57 776 2546 481701931 481703707 0.000000e+00 1936.0
3 TraesCS3A01G375500 chr3D 87.333 450 33 13 309 754 481701449 481701878 6.910000e-136 494.0
4 TraesCS3A01G375500 chr3D 96.465 198 7 0 1 198 481700952 481701149 7.420000e-86 327.0
5 TraesCS3A01G375500 chr3D 91.720 157 12 1 2622 2777 9631841 9631685 1.670000e-52 217.0
6 TraesCS3A01G375500 chr3D 88.667 150 15 2 2629 2777 459260286 459260138 6.110000e-42 182.0
7 TraesCS3A01G375500 chr3D 86.822 129 17 0 1585 1713 474216239 474216111 8.020000e-31 145.0
8 TraesCS3A01G375500 chr3B 86.731 1854 102 58 776 2572 643256531 643258297 0.000000e+00 1929.0
9 TraesCS3A01G375500 chr3B 85.055 455 39 17 307 752 643256041 643256475 1.180000e-118 436.0
10 TraesCS3A01G375500 chr1A 80.980 347 52 11 1022 1359 470686661 470686320 2.120000e-66 263.0
11 TraesCS3A01G375500 chr1A 89.947 189 16 2 1592 1777 470686083 470685895 9.940000e-60 241.0
12 TraesCS3A01G375500 chr1A 87.302 126 14 2 1589 1713 474450730 474450606 2.880000e-30 143.0
13 TraesCS3A01G375500 chr1B 90.476 189 15 2 1592 1777 495415717 495415529 2.140000e-61 246.0
14 TraesCS3A01G375500 chr1D 89.947 189 16 2 1592 1777 371341254 371341066 9.940000e-60 241.0
15 TraesCS3A01G375500 chr1D 87.121 132 14 3 1585 1715 375646703 375646574 2.230000e-31 147.0
16 TraesCS3A01G375500 chr7D 87.919 149 18 0 2629 2777 124374162 124374014 2.840000e-40 176.0
17 TraesCS3A01G375500 chr7D 91.129 124 11 0 2654 2777 611443001 611443124 4.760000e-38 169.0
18 TraesCS3A01G375500 chr2A 84.713 157 19 3 2626 2777 482052425 482052581 4.790000e-33 152.0
19 TraesCS3A01G375500 chr7A 77.165 127 27 2 2640 2765 4746490 4746615 3.840000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G375500 chr3A 624828372 624831148 2776 False 5129.0 5129 100.000000 1 2777 1 chr3A.!!$F1 2776
1 TraesCS3A01G375500 chr3D 481700952 481703707 2755 False 919.0 1936 90.203333 1 2546 3 chr3D.!!$F1 2545
2 TraesCS3A01G375500 chr3B 643256041 643258297 2256 False 1182.5 1929 85.893000 307 2572 2 chr3B.!!$F1 2265
3 TraesCS3A01G375500 chr1A 470685895 470686661 766 True 252.0 263 85.463500 1022 1777 2 chr1A.!!$R2 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 699 0.247775 AACAAACCGAAACGTCGCAC 60.248 50.000 0.0 0.0 46.28 5.34 F
561 766 1.135402 CAGCAAACCAATAACCGCCTC 60.135 52.381 0.0 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1364 1618 0.107165 AGAAGGGCTTTCGGGTATGC 60.107 55.0 3.52 0.0 40.86 3.14 R
2372 2754 0.108615 CAATCAACGACGGAGGAGCT 60.109 55.0 0.00 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.625313 TGCAATTGGGTACATGACATACG 59.375 43.478 7.72 0.00 0.00 3.06
36 37 3.003275 GCAATTGGGTACATGACATACGG 59.997 47.826 7.72 0.00 0.00 4.02
89 90 3.607490 AGGCCAGATGCAATTCCTAAT 57.393 42.857 5.01 0.00 43.89 1.73
116 117 8.986991 AGAGAGGAAAATGAGATTATACAGTGT 58.013 33.333 0.00 0.00 0.00 3.55
117 118 9.606631 GAGAGGAAAATGAGATTATACAGTGTT 57.393 33.333 0.00 0.00 0.00 3.32
127 128 8.988934 TGAGATTATACAGTGTTGTGAAAGAAC 58.011 33.333 0.00 0.00 41.08 3.01
155 156 1.323791 GCGTCGTTTGTAATGTTGCC 58.676 50.000 0.00 0.00 0.00 4.52
200 311 1.130749 GAAGTCGTCGCTCTCAGCTAA 59.869 52.381 0.00 0.00 39.60 3.09
201 312 1.166129 AGTCGTCGCTCTCAGCTAAA 58.834 50.000 0.00 0.00 39.60 1.85
226 337 5.796424 AATCCCATTGTTATGAGGATTGC 57.204 39.130 14.57 0.00 43.11 3.56
231 342 5.450965 CCCATTGTTATGAGGATTGCAAGTC 60.451 44.000 4.94 2.21 33.37 3.01
236 347 2.496899 TGAGGATTGCAAGTCCCTTC 57.503 50.000 18.57 13.38 36.36 3.46
246 357 0.759346 AAGTCCCTTCGTGAAGCACT 59.241 50.000 4.05 5.56 37.11 4.40
247 358 1.629043 AGTCCCTTCGTGAAGCACTA 58.371 50.000 4.05 0.00 37.11 2.74
256 367 3.585862 TCGTGAAGCACTACAAATCCTC 58.414 45.455 0.00 0.00 31.34 3.71
258 369 2.094417 GTGAAGCACTACAAATCCTCGC 59.906 50.000 0.00 0.00 0.00 5.03
323 511 9.943163 AAAATGTTGTCCCAAAAATAAAAATCG 57.057 25.926 0.00 0.00 0.00 3.34
385 574 2.480244 CCAGCAATCTCTGTCGATTCGA 60.480 50.000 4.29 4.29 31.52 3.71
403 592 1.569653 GAGCTACAGGTACAACCCCT 58.430 55.000 0.00 0.00 39.75 4.79
404 593 2.743553 GAGCTACAGGTACAACCCCTA 58.256 52.381 0.00 0.00 39.75 3.53
409 598 4.505390 GCTACAGGTACAACCCCTAAACAA 60.505 45.833 0.00 0.00 39.75 2.83
410 599 4.523168 ACAGGTACAACCCCTAAACAAA 57.477 40.909 0.00 0.00 39.75 2.83
411 600 4.209538 ACAGGTACAACCCCTAAACAAAC 58.790 43.478 0.00 0.00 39.75 2.93
412 601 3.570975 CAGGTACAACCCCTAAACAAACC 59.429 47.826 0.00 0.00 39.75 3.27
413 602 2.553602 GGTACAACCCCTAAACAAACCG 59.446 50.000 0.00 0.00 30.04 4.44
414 603 2.732844 ACAACCCCTAAACAAACCGA 57.267 45.000 0.00 0.00 0.00 4.69
415 604 3.015675 ACAACCCCTAAACAAACCGAA 57.984 42.857 0.00 0.00 0.00 4.30
416 605 2.689471 ACAACCCCTAAACAAACCGAAC 59.311 45.455 0.00 0.00 0.00 3.95
417 606 2.953648 CAACCCCTAAACAAACCGAACT 59.046 45.455 0.00 0.00 0.00 3.01
419 608 4.436113 ACCCCTAAACAAACCGAACTTA 57.564 40.909 0.00 0.00 0.00 2.24
424 613 6.208007 CCCCTAAACAAACCGAACTTAATTCT 59.792 38.462 0.00 0.00 34.88 2.40
439 628 5.647658 ACTTAATTCTCGTTGCCAATCATCA 59.352 36.000 0.00 0.00 0.00 3.07
440 629 4.627611 AATTCTCGTTGCCAATCATCAG 57.372 40.909 0.00 0.00 0.00 2.90
449 638 1.068127 GCCAATCATCAGTTGCATCCC 59.932 52.381 0.00 0.00 0.00 3.85
451 640 2.963101 CCAATCATCAGTTGCATCCCAT 59.037 45.455 0.00 0.00 0.00 4.00
454 643 3.588210 TCATCAGTTGCATCCCATCAT 57.412 42.857 0.00 0.00 0.00 2.45
458 663 3.548770 TCAGTTGCATCCCATCATTCTC 58.451 45.455 0.00 0.00 0.00 2.87
460 665 3.564644 CAGTTGCATCCCATCATTCTCTC 59.435 47.826 0.00 0.00 0.00 3.20
468 673 5.815233 TCCCATCATTCTCTCCAGATAAC 57.185 43.478 0.00 0.00 0.00 1.89
472 677 4.007581 TCATTCTCTCCAGATAACCCCA 57.992 45.455 0.00 0.00 0.00 4.96
478 683 3.519510 CTCTCCAGATAACCCCAGAAACA 59.480 47.826 0.00 0.00 0.00 2.83
482 687 3.509967 CCAGATAACCCCAGAAACAAACC 59.490 47.826 0.00 0.00 0.00 3.27
490 695 2.540157 CCCAGAAACAAACCGAAACGTC 60.540 50.000 0.00 0.00 0.00 4.34
492 697 1.106933 GAAACAAACCGAAACGTCGC 58.893 50.000 0.00 0.00 46.28 5.19
493 698 0.447011 AAACAAACCGAAACGTCGCA 59.553 45.000 0.00 0.00 46.28 5.10
494 699 0.247775 AACAAACCGAAACGTCGCAC 60.248 50.000 0.00 0.00 46.28 5.34
495 700 1.716378 CAAACCGAAACGTCGCACG 60.716 57.895 7.07 7.07 46.28 5.34
561 766 1.135402 CAGCAAACCAATAACCGCCTC 60.135 52.381 0.00 0.00 0.00 4.70
622 827 1.871077 GTTTCACCTTTACCGCCGG 59.129 57.895 0.00 0.00 0.00 6.13
761 966 2.757099 CAGCTGAATGGCCCCACC 60.757 66.667 8.42 0.00 39.84 4.61
762 967 2.943265 AGCTGAATGGCCCCACCT 60.943 61.111 0.00 0.00 40.22 4.00
763 968 1.619363 AGCTGAATGGCCCCACCTA 60.619 57.895 0.00 0.00 40.22 3.08
764 969 1.214305 AGCTGAATGGCCCCACCTAA 61.214 55.000 0.00 0.00 40.22 2.69
775 981 1.223487 CCACCTAACCCACCGGATG 59.777 63.158 9.46 2.15 0.00 3.51
810 1047 6.365247 GTCGCCGATCTTTATAAAGCAGAATA 59.635 38.462 18.68 2.82 35.99 1.75
825 1062 4.825252 ATACCGTTCCCACGCGCC 62.825 66.667 5.73 0.00 45.72 6.53
915 1160 4.236416 CCCGCGCGCCAGTTAATG 62.236 66.667 27.36 8.60 0.00 1.90
983 1228 2.043450 AGGAGGGCCAGAGAGACG 60.043 66.667 6.18 0.00 36.29 4.18
984 1229 3.844090 GGAGGGCCAGAGAGACGC 61.844 72.222 6.18 0.00 0.00 5.19
985 1230 3.071206 GAGGGCCAGAGAGACGCA 61.071 66.667 6.18 0.00 0.00 5.24
986 1231 3.073735 AGGGCCAGAGAGACGCAG 61.074 66.667 6.18 0.00 0.00 5.18
987 1232 3.071206 GGGCCAGAGAGACGCAGA 61.071 66.667 4.39 0.00 0.00 4.26
989 1234 2.493973 GCCAGAGAGACGCAGAGG 59.506 66.667 0.00 0.00 0.00 3.69
1006 1251 4.554036 GCGAGGAGGCCATGGACC 62.554 72.222 16.13 15.57 0.00 4.46
1364 1618 1.467035 GGAGGAGCACAAGTACGTACG 60.467 57.143 19.49 15.01 0.00 3.67
1366 1620 0.387622 GGAGCACAAGTACGTACGCA 60.388 55.000 19.49 0.00 0.00 5.24
1372 1630 1.202177 ACAAGTACGTACGCATACCCG 60.202 52.381 19.49 7.79 0.00 5.28
1414 1732 2.890474 ATCAATCACCGTCGCCGC 60.890 61.111 0.00 0.00 0.00 6.53
1465 1784 0.025128 GATCTTTCCGCGTCGCTTTC 59.975 55.000 16.36 0.00 0.00 2.62
1466 1785 1.683790 ATCTTTCCGCGTCGCTTTCG 61.684 55.000 16.36 0.00 0.00 3.46
1473 1792 4.893241 CGTCGCTTTCGCTTTGTT 57.107 50.000 0.00 0.00 35.26 2.83
1474 1793 2.399704 CGTCGCTTTCGCTTTGTTG 58.600 52.632 0.00 0.00 35.26 3.33
1475 1794 0.315869 CGTCGCTTTCGCTTTGTTGT 60.316 50.000 0.00 0.00 35.26 3.32
1476 1795 1.822581 GTCGCTTTCGCTTTGTTGTT 58.177 45.000 0.00 0.00 35.26 2.83
1477 1796 1.512771 GTCGCTTTCGCTTTGTTGTTG 59.487 47.619 0.00 0.00 35.26 3.33
1478 1797 0.845768 CGCTTTCGCTTTGTTGTTGG 59.154 50.000 0.00 0.00 0.00 3.77
1479 1798 0.576798 GCTTTCGCTTTGTTGTTGGC 59.423 50.000 0.00 0.00 0.00 4.52
1505 1824 4.219999 GCCAGCGAGCTCCTCCTC 62.220 72.222 8.47 0.00 0.00 3.71
1563 1888 2.665537 CACAGCGTGATTGACTCTTCTC 59.334 50.000 3.04 0.00 35.23 2.87
1566 1891 2.165437 AGCGTGATTGACTCTTCTCCTC 59.835 50.000 0.00 0.00 0.00 3.71
1569 1894 3.428725 CGTGATTGACTCTTCTCCTCTGG 60.429 52.174 0.00 0.00 0.00 3.86
1586 1918 2.252260 GTGGATGCGTGTGTGTGC 59.748 61.111 0.00 0.00 0.00 4.57
1779 2122 1.377202 CATCACCACCCCTTGACCG 60.377 63.158 0.00 0.00 0.00 4.79
1831 2174 4.554363 CAGTCGCCGCTACTCCCG 62.554 72.222 0.00 0.00 0.00 5.14
1833 2176 4.849329 GTCGCCGCTACTCCCGTG 62.849 72.222 0.00 0.00 0.00 4.94
1854 2197 5.048504 CGTGGCCGTAATCTTATCCTAGTTA 60.049 44.000 0.00 0.00 0.00 2.24
1855 2198 6.155136 GTGGCCGTAATCTTATCCTAGTTAC 58.845 44.000 0.00 0.00 0.00 2.50
1926 2271 9.531158 AGTACTTAGACTTAGCCTTAAGAAGAA 57.469 33.333 3.36 0.00 38.88 2.52
1927 2272 9.791820 GTACTTAGACTTAGCCTTAAGAAGAAG 57.208 37.037 3.36 6.39 38.88 2.85
1928 2273 8.653036 ACTTAGACTTAGCCTTAAGAAGAAGA 57.347 34.615 3.36 0.00 38.88 2.87
2019 2367 9.635404 AGTGTCTAGCTAGATTTTACTATGAGT 57.365 33.333 25.74 4.77 34.39 3.41
2020 2368 9.887406 GTGTCTAGCTAGATTTTACTATGAGTC 57.113 37.037 25.74 8.72 34.39 3.36
2023 2371 9.854668 TCTAGCTAGATTTTACTATGAGTCTGT 57.145 33.333 19.72 0.00 0.00 3.41
2075 2442 4.688511 AGATCGTGTCTAGTCACTGTTC 57.311 45.455 16.37 13.34 34.69 3.18
2084 2451 5.958380 TGTCTAGTCACTGTTCCTATGGATT 59.042 40.000 0.00 0.00 0.00 3.01
2085 2452 6.440647 TGTCTAGTCACTGTTCCTATGGATTT 59.559 38.462 0.00 0.00 0.00 2.17
2086 2453 7.618117 TGTCTAGTCACTGTTCCTATGGATTTA 59.382 37.037 0.00 0.00 0.00 1.40
2087 2454 7.921745 GTCTAGTCACTGTTCCTATGGATTTAC 59.078 40.741 0.00 0.00 0.00 2.01
2100 2467 8.597167 TCCTATGGATTTACTATGATTCTGTGG 58.403 37.037 0.00 0.00 0.00 4.17
2108 2475 0.744874 ATGATTCTGTGGCATGCTGC 59.255 50.000 18.92 11.17 44.08 5.25
2121 2488 4.129737 GCTGCCGTCGTAGCTGGA 62.130 66.667 10.45 0.00 43.74 3.86
2131 2498 3.643763 GTCGTAGCTGGACTGGATAATG 58.356 50.000 11.30 0.00 0.00 1.90
2157 2524 0.321671 AGTCATGTGTTCCGGTCCAG 59.678 55.000 0.00 0.00 0.00 3.86
2161 2528 1.553690 ATGTGTTCCGGTCCAGGAGG 61.554 60.000 0.00 0.00 41.98 4.30
2184 2551 3.645975 GACACGTGTTGCCGGTGG 61.646 66.667 24.26 0.00 0.00 4.61
2203 2570 3.490759 GGACACGCACGCATCTGG 61.491 66.667 0.00 0.00 0.00 3.86
2219 2586 1.586154 CTGGGGCATGTGTTTCGTCC 61.586 60.000 0.00 0.00 0.00 4.79
2224 2591 1.635663 GCATGTGTTTCGTCCTCGGG 61.636 60.000 0.00 0.00 37.69 5.14
2225 2592 1.375523 ATGTGTTTCGTCCTCGGGC 60.376 57.895 0.00 0.00 37.69 6.13
2226 2593 2.741211 GTGTTTCGTCCTCGGGCC 60.741 66.667 0.00 0.00 37.69 5.80
2231 2598 2.047213 TTTCGTCCTCGGGCCAACTT 62.047 55.000 4.39 0.00 37.69 2.66
2239 2606 2.328099 CGGGCCAACTTCTCTGTGC 61.328 63.158 4.39 0.00 0.00 4.57
2281 2662 3.337889 TGCGCGACACTTGTCAGC 61.338 61.111 12.10 15.80 44.99 4.26
2350 2732 2.732597 CGGTCACGCCTCAAAACAAAAA 60.733 45.455 0.00 0.00 34.25 1.94
2351 2733 2.601314 GGTCACGCCTCAAAACAAAAAC 59.399 45.455 0.00 0.00 0.00 2.43
2352 2734 3.246619 GTCACGCCTCAAAACAAAAACA 58.753 40.909 0.00 0.00 0.00 2.83
2353 2735 3.675698 GTCACGCCTCAAAACAAAAACAA 59.324 39.130 0.00 0.00 0.00 2.83
2372 2754 4.572571 AAACCCACCGCTTCCGCA 62.573 61.111 0.00 0.00 35.30 5.69
2386 2768 4.421479 CGCAGCTCCTCCGTCGTT 62.421 66.667 0.00 0.00 0.00 3.85
2448 2830 5.252969 ACTGCATCGCATTGACAATATTT 57.747 34.783 0.00 0.00 38.13 1.40
2449 2831 6.375945 ACTGCATCGCATTGACAATATTTA 57.624 33.333 0.00 0.00 38.13 1.40
2548 2935 3.369471 GGAACTTCAGATCAATCGACCCA 60.369 47.826 0.00 0.00 0.00 4.51
2572 2966 3.772060 ACGAATACTCCAACTACGGTC 57.228 47.619 0.00 0.00 0.00 4.79
2573 2967 3.350833 ACGAATACTCCAACTACGGTCT 58.649 45.455 0.00 0.00 0.00 3.85
2574 2968 3.760684 ACGAATACTCCAACTACGGTCTT 59.239 43.478 0.00 0.00 0.00 3.01
2575 2969 4.943705 ACGAATACTCCAACTACGGTCTTA 59.056 41.667 0.00 0.00 0.00 2.10
2576 2970 5.591877 ACGAATACTCCAACTACGGTCTTAT 59.408 40.000 0.00 0.00 0.00 1.73
2577 2971 6.096001 ACGAATACTCCAACTACGGTCTTATT 59.904 38.462 0.00 0.00 0.00 1.40
2578 2972 7.283127 ACGAATACTCCAACTACGGTCTTATTA 59.717 37.037 0.00 0.00 0.00 0.98
2579 2973 8.295288 CGAATACTCCAACTACGGTCTTATTAT 58.705 37.037 0.00 0.00 0.00 1.28
2580 2974 9.978044 GAATACTCCAACTACGGTCTTATTATT 57.022 33.333 0.00 0.00 0.00 1.40
2584 2978 9.760077 ACTCCAACTACGGTCTTATTATTATTG 57.240 33.333 0.00 0.00 0.00 1.90
2585 2979 9.760077 CTCCAACTACGGTCTTATTATTATTGT 57.240 33.333 0.00 0.00 0.00 2.71
2613 3007 8.758633 TTATTACTACTGCACAAAAGAGAGAC 57.241 34.615 0.00 0.00 0.00 3.36
2614 3008 4.672587 ACTACTGCACAAAAGAGAGACA 57.327 40.909 0.00 0.00 0.00 3.41
2615 3009 5.220710 ACTACTGCACAAAAGAGAGACAT 57.779 39.130 0.00 0.00 0.00 3.06
2616 3010 4.993584 ACTACTGCACAAAAGAGAGACATG 59.006 41.667 0.00 0.00 0.00 3.21
2617 3011 2.551459 ACTGCACAAAAGAGAGACATGC 59.449 45.455 0.00 0.00 0.00 4.06
2618 3012 2.812591 CTGCACAAAAGAGAGACATGCT 59.187 45.455 0.00 0.00 32.81 3.79
2619 3013 3.216800 TGCACAAAAGAGAGACATGCTT 58.783 40.909 0.00 0.00 32.81 3.91
2620 3014 4.388485 TGCACAAAAGAGAGACATGCTTA 58.612 39.130 0.00 0.00 32.81 3.09
2621 3015 4.821260 TGCACAAAAGAGAGACATGCTTAA 59.179 37.500 0.00 0.00 32.81 1.85
2622 3016 5.299028 TGCACAAAAGAGAGACATGCTTAAA 59.701 36.000 0.00 0.00 32.81 1.52
2623 3017 6.183360 TGCACAAAAGAGAGACATGCTTAAAA 60.183 34.615 0.00 0.00 32.81 1.52
2624 3018 6.697019 GCACAAAAGAGAGACATGCTTAAAAA 59.303 34.615 0.00 0.00 0.00 1.94
2625 3019 7.383300 GCACAAAAGAGAGACATGCTTAAAAAT 59.617 33.333 0.00 0.00 0.00 1.82
2626 3020 9.897744 CACAAAAGAGAGACATGCTTAAAAATA 57.102 29.630 0.00 0.00 0.00 1.40
2655 3049 9.084533 ACTCTCTTTATCTCAGTTTACAAGTCT 57.915 33.333 0.00 0.00 0.00 3.24
2656 3050 9.921637 CTCTCTTTATCTCAGTTTACAAGTCTT 57.078 33.333 0.00 0.00 0.00 3.01
2657 3051 9.698309 TCTCTTTATCTCAGTTTACAAGTCTTG 57.302 33.333 11.17 11.17 0.00 3.02
2658 3052 8.311650 TCTTTATCTCAGTTTACAAGTCTTGC 57.688 34.615 12.66 0.00 0.00 4.01
2659 3053 7.931407 TCTTTATCTCAGTTTACAAGTCTTGCA 59.069 33.333 12.66 0.00 0.00 4.08
2660 3054 5.931441 ATCTCAGTTTACAAGTCTTGCAC 57.069 39.130 12.66 7.19 0.00 4.57
2661 3055 4.765273 TCTCAGTTTACAAGTCTTGCACA 58.235 39.130 12.66 0.00 0.00 4.57
2662 3056 5.368145 TCTCAGTTTACAAGTCTTGCACAT 58.632 37.500 12.66 0.00 0.00 3.21
2663 3057 6.521162 TCTCAGTTTACAAGTCTTGCACATA 58.479 36.000 12.66 0.00 0.00 2.29
2664 3058 7.161404 TCTCAGTTTACAAGTCTTGCACATAT 58.839 34.615 12.66 0.00 0.00 1.78
2665 3059 8.311109 TCTCAGTTTACAAGTCTTGCACATATA 58.689 33.333 12.66 0.00 0.00 0.86
2666 3060 8.251750 TCAGTTTACAAGTCTTGCACATATAC 57.748 34.615 12.66 3.58 0.00 1.47
2667 3061 7.333423 TCAGTTTACAAGTCTTGCACATATACC 59.667 37.037 12.66 0.00 0.00 2.73
2668 3062 7.334421 CAGTTTACAAGTCTTGCACATATACCT 59.666 37.037 12.66 0.00 0.00 3.08
2669 3063 8.537016 AGTTTACAAGTCTTGCACATATACCTA 58.463 33.333 12.66 0.00 0.00 3.08
2670 3064 8.818057 GTTTACAAGTCTTGCACATATACCTAG 58.182 37.037 12.66 0.00 0.00 3.02
2671 3065 5.918608 ACAAGTCTTGCACATATACCTAGG 58.081 41.667 12.66 7.41 0.00 3.02
2672 3066 5.425539 ACAAGTCTTGCACATATACCTAGGT 59.574 40.000 20.57 20.57 0.00 3.08
2673 3067 5.793030 AGTCTTGCACATATACCTAGGTC 57.207 43.478 20.32 2.18 0.00 3.85
2674 3068 4.278669 AGTCTTGCACATATACCTAGGTCG 59.721 45.833 20.32 8.33 0.00 4.79
2675 3069 4.037684 GTCTTGCACATATACCTAGGTCGT 59.962 45.833 20.32 11.38 0.00 4.34
2676 3070 4.647853 TCTTGCACATATACCTAGGTCGTT 59.352 41.667 20.32 7.44 0.00 3.85
2677 3071 5.829391 TCTTGCACATATACCTAGGTCGTTA 59.171 40.000 20.32 9.57 0.00 3.18
2678 3072 6.321945 TCTTGCACATATACCTAGGTCGTTAA 59.678 38.462 20.32 0.00 0.00 2.01
2679 3073 6.659745 TGCACATATACCTAGGTCGTTAAT 57.340 37.500 20.32 8.62 0.00 1.40
2680 3074 7.058023 TGCACATATACCTAGGTCGTTAATT 57.942 36.000 20.32 0.00 0.00 1.40
2681 3075 7.502696 TGCACATATACCTAGGTCGTTAATTT 58.497 34.615 20.32 0.00 0.00 1.82
2682 3076 7.439955 TGCACATATACCTAGGTCGTTAATTTG 59.560 37.037 20.32 13.29 0.00 2.32
2683 3077 7.654520 GCACATATACCTAGGTCGTTAATTTGA 59.345 37.037 20.32 0.00 0.00 2.69
2684 3078 9.706691 CACATATACCTAGGTCGTTAATTTGAT 57.293 33.333 20.32 4.64 0.00 2.57
2685 3079 9.924650 ACATATACCTAGGTCGTTAATTTGATC 57.075 33.333 20.32 0.00 0.00 2.92
2686 3080 9.923143 CATATACCTAGGTCGTTAATTTGATCA 57.077 33.333 20.32 0.00 0.00 2.92
2688 3082 6.980051 ACCTAGGTCGTTAATTTGATCAAC 57.020 37.500 9.21 0.00 0.00 3.18
2689 3083 6.708285 ACCTAGGTCGTTAATTTGATCAACT 58.292 36.000 9.21 0.00 0.00 3.16
2690 3084 7.166167 ACCTAGGTCGTTAATTTGATCAACTT 58.834 34.615 9.21 11.90 0.00 2.66
2691 3085 8.316214 ACCTAGGTCGTTAATTTGATCAACTTA 58.684 33.333 9.21 10.82 0.00 2.24
2692 3086 9.158233 CCTAGGTCGTTAATTTGATCAACTTAA 57.842 33.333 20.86 20.86 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 2.223782 GCACCTGCATGTTCTTTCACAA 60.224 45.455 0.00 0.00 41.59 3.33
117 118 1.337703 GCACCTGCATGTTCTTTCACA 59.662 47.619 0.00 0.00 41.59 3.58
127 128 1.440850 CAAACGACGCACCTGCATG 60.441 57.895 0.00 0.00 42.21 4.06
201 312 7.049754 GCAATCCTCATAACAATGGGATTTTT 58.950 34.615 13.74 0.00 38.43 1.94
226 337 1.541233 AGTGCTTCACGAAGGGACTTG 60.541 52.381 8.78 0.00 43.34 3.16
231 342 2.163818 TTGTAGTGCTTCACGAAGGG 57.836 50.000 8.78 0.00 39.64 3.95
236 347 2.345641 CGAGGATTTGTAGTGCTTCACG 59.654 50.000 0.00 0.00 39.64 4.35
309 420 8.862074 TCATCTGCATCACGATTTTTATTTTTG 58.138 29.630 0.00 0.00 0.00 2.44
321 509 4.142093 TGAAGATTCTCATCTGCATCACGA 60.142 41.667 0.00 0.00 39.88 4.35
322 510 4.117685 TGAAGATTCTCATCTGCATCACG 58.882 43.478 0.00 0.00 39.88 4.35
323 511 6.621316 ATTGAAGATTCTCATCTGCATCAC 57.379 37.500 0.00 0.00 43.72 3.06
385 574 2.934263 TAGGGGTTGTACCTGTAGCT 57.066 50.000 0.00 0.00 39.12 3.32
403 592 7.481275 ACGAGAATTAAGTTCGGTTTGTTTA 57.519 32.000 10.55 0.00 41.84 2.01
404 593 6.367686 ACGAGAATTAAGTTCGGTTTGTTT 57.632 33.333 10.55 0.00 41.84 2.83
409 598 3.187842 GGCAACGAGAATTAAGTTCGGTT 59.812 43.478 10.55 7.69 41.84 4.44
410 599 2.740447 GGCAACGAGAATTAAGTTCGGT 59.260 45.455 10.55 3.40 41.84 4.69
411 600 2.739913 TGGCAACGAGAATTAAGTTCGG 59.260 45.455 10.55 3.17 40.18 4.30
412 601 4.398549 TTGGCAACGAGAATTAAGTTCG 57.601 40.909 0.00 6.13 40.18 3.95
413 602 5.938322 TGATTGGCAACGAGAATTAAGTTC 58.062 37.500 0.00 0.00 42.51 3.01
414 603 5.957842 TGATTGGCAACGAGAATTAAGTT 57.042 34.783 0.00 0.00 42.51 2.66
415 604 5.647658 TGATGATTGGCAACGAGAATTAAGT 59.352 36.000 0.00 0.00 42.51 2.24
416 605 6.122850 TGATGATTGGCAACGAGAATTAAG 57.877 37.500 0.00 0.00 42.51 1.85
417 606 5.647658 ACTGATGATTGGCAACGAGAATTAA 59.352 36.000 0.00 0.00 42.51 1.40
419 608 4.012374 ACTGATGATTGGCAACGAGAATT 58.988 39.130 0.00 0.00 42.51 2.17
424 613 1.199789 GCAACTGATGATTGGCAACGA 59.800 47.619 0.00 0.00 42.51 3.85
439 628 3.434739 GGAGAGAATGATGGGATGCAACT 60.435 47.826 0.00 0.00 0.00 3.16
440 629 2.883386 GGAGAGAATGATGGGATGCAAC 59.117 50.000 0.00 0.00 0.00 4.17
449 638 4.349048 TGGGGTTATCTGGAGAGAATGATG 59.651 45.833 0.00 0.00 0.00 3.07
451 640 3.969976 CTGGGGTTATCTGGAGAGAATGA 59.030 47.826 0.00 0.00 0.00 2.57
454 643 3.776731 TCTGGGGTTATCTGGAGAGAA 57.223 47.619 0.00 0.00 0.00 2.87
458 663 4.301072 TTGTTTCTGGGGTTATCTGGAG 57.699 45.455 0.00 0.00 0.00 3.86
460 665 3.509967 GGTTTGTTTCTGGGGTTATCTGG 59.490 47.826 0.00 0.00 0.00 3.86
468 673 1.268845 CGTTTCGGTTTGTTTCTGGGG 60.269 52.381 0.00 0.00 0.00 4.96
472 677 1.267682 GCGACGTTTCGGTTTGTTTCT 60.268 47.619 0.00 0.00 45.98 2.52
478 683 2.622085 CGTGCGACGTTTCGGTTT 59.378 55.556 0.00 0.00 45.98 3.27
561 766 1.633432 TGCGGGGAATAGAATATGGGG 59.367 52.381 0.00 0.00 0.00 4.96
754 959 4.419921 CGGTGGGTTAGGTGGGGC 62.420 72.222 0.00 0.00 0.00 5.80
755 960 3.723922 CCGGTGGGTTAGGTGGGG 61.724 72.222 0.00 0.00 0.00 4.96
759 964 3.735725 CCATCCGGTGGGTTAGGT 58.264 61.111 13.51 0.00 44.79 3.08
825 1062 1.130749 TGTTTGGTTCGGTTCGTTGTG 59.869 47.619 0.00 0.00 0.00 3.33
836 1073 1.358759 CCGTGTGGCTGTTTGGTTC 59.641 57.895 0.00 0.00 0.00 3.62
907 1152 2.404789 CGCTGCGCCCATTAACTG 59.595 61.111 9.88 0.00 0.00 3.16
938 1183 4.295119 ACGACACGACACCCAGGC 62.295 66.667 0.00 0.00 0.00 4.85
971 1216 2.493973 CTCTGCGTCTCTCTGGCC 59.506 66.667 0.00 0.00 0.00 5.36
989 1234 4.554036 GGTCCATGGCCTCCTCGC 62.554 72.222 6.96 0.00 0.00 5.03
991 1236 0.691078 TACAGGTCCATGGCCTCCTC 60.691 60.000 20.88 2.15 33.31 3.71
992 1237 0.983378 GTACAGGTCCATGGCCTCCT 60.983 60.000 20.88 17.54 33.31 3.69
993 1238 0.983378 AGTACAGGTCCATGGCCTCC 60.983 60.000 20.88 15.85 33.31 4.30
1006 1251 1.141881 CGGCCTGCTGGTAGTACAG 59.858 63.158 11.69 0.00 41.41 2.74
1364 1618 0.107165 AGAAGGGCTTTCGGGTATGC 60.107 55.000 3.52 0.00 40.86 3.14
1366 1620 1.880941 AGAGAAGGGCTTTCGGGTAT 58.119 50.000 3.52 0.00 40.86 2.73
1372 1630 2.887152 TGAGCAAAAGAGAAGGGCTTTC 59.113 45.455 0.32 0.32 34.68 2.62
1414 1732 2.505498 CGATTCGAACCACCGCGAG 61.505 63.158 8.23 0.00 37.85 5.03
1418 1736 1.852895 GAATCTCGATTCGAACCACCG 59.147 52.381 10.38 2.28 37.97 4.94
1427 1745 1.132588 CGCCGGAAGAATCTCGATTC 58.867 55.000 5.05 10.84 45.66 2.52
1428 1746 0.744874 TCGCCGGAAGAATCTCGATT 59.255 50.000 5.05 0.00 0.00 3.34
1429 1747 0.962489 ATCGCCGGAAGAATCTCGAT 59.038 50.000 5.05 4.29 32.27 3.59
1466 1785 3.029735 CCGCGCCAACAACAAAGC 61.030 61.111 0.00 0.00 0.00 3.51
1467 1786 1.370414 CTCCGCGCCAACAACAAAG 60.370 57.895 0.00 0.00 0.00 2.77
1468 1787 1.377366 TTCTCCGCGCCAACAACAAA 61.377 50.000 0.00 0.00 0.00 2.83
1469 1788 1.781025 CTTCTCCGCGCCAACAACAA 61.781 55.000 0.00 0.00 0.00 2.83
1471 1790 2.556287 CTTCTCCGCGCCAACAAC 59.444 61.111 0.00 0.00 0.00 3.32
1472 1791 3.353836 GCTTCTCCGCGCCAACAA 61.354 61.111 0.00 0.00 0.00 2.83
1535 1854 2.671177 AATCACGCTGTGTCGCTGC 61.671 57.895 5.26 5.26 38.48 5.25
1546 1865 2.165437 AGAGGAGAAGAGTCAATCACGC 59.835 50.000 0.00 0.00 0.00 5.34
1548 1867 3.513515 ACCAGAGGAGAAGAGTCAATCAC 59.486 47.826 0.00 0.00 0.00 3.06
1551 1876 2.836981 CCACCAGAGGAGAAGAGTCAAT 59.163 50.000 0.00 0.00 0.00 2.57
1563 1888 1.742880 CACACGCATCCACCAGAGG 60.743 63.158 0.00 0.00 0.00 3.69
1566 1891 1.597854 ACACACACGCATCCACCAG 60.598 57.895 0.00 0.00 0.00 4.00
1569 1894 2.252260 GCACACACACGCATCCAC 59.748 61.111 0.00 0.00 0.00 4.02
1797 2140 4.315803 CGACTGATTAAACAAGGGAGTGT 58.684 43.478 0.00 0.00 0.00 3.55
1831 2174 4.868314 ACTAGGATAAGATTACGGCCAC 57.132 45.455 2.24 0.00 0.00 5.01
1832 2175 6.073314 AGTAACTAGGATAAGATTACGGCCA 58.927 40.000 2.24 0.00 32.25 5.36
1833 2176 6.587206 AGTAACTAGGATAAGATTACGGCC 57.413 41.667 0.00 0.00 32.25 6.13
1834 2177 8.103948 TGTAGTAACTAGGATAAGATTACGGC 57.896 38.462 0.00 0.00 32.25 5.68
1926 2271 2.803492 GCCAAGTTGTTCGTCAGAGTCT 60.803 50.000 1.45 0.00 0.00 3.24
1927 2272 1.527311 GCCAAGTTGTTCGTCAGAGTC 59.473 52.381 1.45 0.00 0.00 3.36
1928 2273 1.139058 AGCCAAGTTGTTCGTCAGAGT 59.861 47.619 1.45 0.00 0.00 3.24
1993 2338 9.635404 ACTCATAGTAAAATCTAGCTAGACACT 57.365 33.333 25.52 23.63 34.72 3.55
2055 2403 3.440872 AGGAACAGTGACTAGACACGATC 59.559 47.826 17.59 15.84 44.35 3.69
2056 2404 3.422796 AGGAACAGTGACTAGACACGAT 58.577 45.455 17.59 8.69 44.35 3.73
2059 2407 4.705507 TCCATAGGAACAGTGACTAGACAC 59.294 45.833 16.23 16.23 40.60 3.67
2060 2408 4.930696 TCCATAGGAACAGTGACTAGACA 58.069 43.478 0.00 0.00 0.00 3.41
2061 2409 6.472686 AATCCATAGGAACAGTGACTAGAC 57.527 41.667 0.00 0.00 34.34 2.59
2062 2410 7.839705 AGTAAATCCATAGGAACAGTGACTAGA 59.160 37.037 0.00 0.00 34.34 2.43
2063 2411 8.012957 AGTAAATCCATAGGAACAGTGACTAG 57.987 38.462 0.00 0.00 34.34 2.57
2064 2412 7.973048 AGTAAATCCATAGGAACAGTGACTA 57.027 36.000 0.00 0.00 34.34 2.59
2065 2413 6.875972 AGTAAATCCATAGGAACAGTGACT 57.124 37.500 0.00 0.00 34.34 3.41
2075 2442 7.335422 GCCACAGAATCATAGTAAATCCATAGG 59.665 40.741 0.00 0.00 0.00 2.57
2084 2451 4.818005 CAGCATGCCACAGAATCATAGTAA 59.182 41.667 15.66 0.00 0.00 2.24
2085 2452 4.383173 CAGCATGCCACAGAATCATAGTA 58.617 43.478 15.66 0.00 0.00 1.82
2086 2453 3.211865 CAGCATGCCACAGAATCATAGT 58.788 45.455 15.66 0.00 0.00 2.12
2087 2454 3.898517 CAGCATGCCACAGAATCATAG 57.101 47.619 15.66 0.00 0.00 2.23
2108 2475 1.384989 ATCCAGTCCAGCTACGACGG 61.385 60.000 0.00 13.26 35.33 4.79
2110 2477 3.068307 ACATTATCCAGTCCAGCTACGAC 59.932 47.826 5.20 5.20 0.00 4.34
2111 2478 3.296854 ACATTATCCAGTCCAGCTACGA 58.703 45.455 0.00 0.00 0.00 3.43
2112 2479 3.735237 ACATTATCCAGTCCAGCTACG 57.265 47.619 0.00 0.00 0.00 3.51
2113 2480 4.770795 ACAACATTATCCAGTCCAGCTAC 58.229 43.478 0.00 0.00 0.00 3.58
2114 2481 5.423931 TGTACAACATTATCCAGTCCAGCTA 59.576 40.000 0.00 0.00 0.00 3.32
2115 2482 4.225042 TGTACAACATTATCCAGTCCAGCT 59.775 41.667 0.00 0.00 0.00 4.24
2121 2488 6.595326 CACATGACTGTACAACATTATCCAGT 59.405 38.462 0.00 0.00 35.97 4.00
2131 2498 2.478894 CCGGAACACATGACTGTACAAC 59.521 50.000 0.00 0.00 33.14 3.32
2141 2508 0.391661 CTCCTGGACCGGAACACATG 60.392 60.000 9.46 0.00 31.44 3.21
2157 2524 1.531149 CAACACGTGTCATTCACCTCC 59.469 52.381 23.61 0.00 43.51 4.30
2161 2528 0.384230 CGGCAACACGTGTCATTCAC 60.384 55.000 23.61 8.50 43.03 3.18
2171 2538 4.920112 TCCACCACCGGCAACACG 62.920 66.667 0.00 0.00 0.00 4.49
2184 2551 2.738521 AGATGCGTGCGTGTCCAC 60.739 61.111 0.00 0.00 0.00 4.02
2194 2561 2.438975 CACATGCCCCAGATGCGT 60.439 61.111 0.00 0.00 0.00 5.24
2203 2570 1.635663 CGAGGACGAAACACATGCCC 61.636 60.000 0.00 0.00 42.66 5.36
2219 2586 0.671781 CACAGAGAAGTTGGCCCGAG 60.672 60.000 0.00 0.00 0.00 4.63
2224 2591 4.481195 TGGCACAGAGAAGTTGGC 57.519 55.556 0.00 0.00 0.00 4.52
2239 2606 1.430479 TACACACGTGCCGTTTATGG 58.570 50.000 17.22 0.00 38.32 2.74
2353 2735 3.439008 CGGAAGCGGTGGGTTTTT 58.561 55.556 0.00 0.00 33.17 1.94
2372 2754 0.108615 CAATCAACGACGGAGGAGCT 60.109 55.000 0.00 0.00 0.00 4.09
2386 2768 4.132336 GCTGAATGGCATAGAGACAATCA 58.868 43.478 0.00 0.00 42.90 2.57
2448 2830 8.203485 AGCATTTCTTGTGGAAGAACAAAAATA 58.797 29.630 0.00 0.00 45.90 1.40
2449 2831 7.049754 AGCATTTCTTGTGGAAGAACAAAAAT 58.950 30.769 0.00 0.00 45.90 1.82
2456 2839 6.707440 TTGTAAGCATTTCTTGTGGAAGAA 57.293 33.333 0.00 0.00 44.83 2.52
2503 2888 1.660607 CGTGGTCTGATTTGTGGATCG 59.339 52.381 0.00 0.00 0.00 3.69
2548 2935 3.508762 CGTAGTTGGAGTATTCGTTGCT 58.491 45.455 0.00 0.00 0.00 3.91
2587 2981 9.372369 GTCTCTCTTTTGTGCAGTAGTAATAAT 57.628 33.333 0.00 0.00 0.00 1.28
2588 2982 8.364894 TGTCTCTCTTTTGTGCAGTAGTAATAA 58.635 33.333 0.00 0.00 0.00 1.40
2589 2983 7.892609 TGTCTCTCTTTTGTGCAGTAGTAATA 58.107 34.615 0.00 0.00 0.00 0.98
2590 2984 6.759272 TGTCTCTCTTTTGTGCAGTAGTAAT 58.241 36.000 0.00 0.00 0.00 1.89
2591 2985 6.156748 TGTCTCTCTTTTGTGCAGTAGTAA 57.843 37.500 0.00 0.00 0.00 2.24
2592 2986 5.784578 TGTCTCTCTTTTGTGCAGTAGTA 57.215 39.130 0.00 0.00 0.00 1.82
2593 2987 4.672587 TGTCTCTCTTTTGTGCAGTAGT 57.327 40.909 0.00 0.00 0.00 2.73
2594 2988 4.142945 GCATGTCTCTCTTTTGTGCAGTAG 60.143 45.833 0.00 0.00 0.00 2.57
2595 2989 3.748048 GCATGTCTCTCTTTTGTGCAGTA 59.252 43.478 0.00 0.00 0.00 2.74
2596 2990 2.551459 GCATGTCTCTCTTTTGTGCAGT 59.449 45.455 0.00 0.00 0.00 4.40
2597 2991 2.812591 AGCATGTCTCTCTTTTGTGCAG 59.187 45.455 0.00 0.00 33.80 4.41
2598 2992 2.854963 AGCATGTCTCTCTTTTGTGCA 58.145 42.857 0.00 0.00 33.80 4.57
2599 2993 3.911661 AAGCATGTCTCTCTTTTGTGC 57.088 42.857 0.00 0.00 0.00 4.57
2600 2994 8.807667 ATTTTTAAGCATGTCTCTCTTTTGTG 57.192 30.769 0.00 0.00 0.00 3.33
2629 3023 9.084533 AGACTTGTAAACTGAGATAAAGAGAGT 57.915 33.333 0.00 0.00 0.00 3.24
2630 3024 9.921637 AAGACTTGTAAACTGAGATAAAGAGAG 57.078 33.333 0.00 0.00 0.00 3.20
2631 3025 9.698309 CAAGACTTGTAAACTGAGATAAAGAGA 57.302 33.333 7.05 0.00 0.00 3.10
2632 3026 8.439286 GCAAGACTTGTAAACTGAGATAAAGAG 58.561 37.037 16.39 0.00 0.00 2.85
2633 3027 7.931407 TGCAAGACTTGTAAACTGAGATAAAGA 59.069 33.333 16.39 0.00 0.00 2.52
2634 3028 8.012241 GTGCAAGACTTGTAAACTGAGATAAAG 58.988 37.037 16.39 0.00 0.00 1.85
2635 3029 7.497579 TGTGCAAGACTTGTAAACTGAGATAAA 59.502 33.333 16.39 0.00 0.00 1.40
2636 3030 6.989759 TGTGCAAGACTTGTAAACTGAGATAA 59.010 34.615 16.39 0.00 0.00 1.75
2637 3031 6.521162 TGTGCAAGACTTGTAAACTGAGATA 58.479 36.000 16.39 0.00 0.00 1.98
2638 3032 5.368145 TGTGCAAGACTTGTAAACTGAGAT 58.632 37.500 16.39 0.00 0.00 2.75
2639 3033 4.765273 TGTGCAAGACTTGTAAACTGAGA 58.235 39.130 16.39 0.00 0.00 3.27
2640 3034 5.679734 ATGTGCAAGACTTGTAAACTGAG 57.320 39.130 16.39 0.00 0.00 3.35
2641 3035 7.333423 GGTATATGTGCAAGACTTGTAAACTGA 59.667 37.037 16.39 6.06 0.00 3.41
2642 3036 7.334421 AGGTATATGTGCAAGACTTGTAAACTG 59.666 37.037 16.39 0.00 0.00 3.16
2643 3037 7.394816 AGGTATATGTGCAAGACTTGTAAACT 58.605 34.615 16.39 2.15 0.00 2.66
2644 3038 7.611213 AGGTATATGTGCAAGACTTGTAAAC 57.389 36.000 16.39 12.43 0.00 2.01
2645 3039 7.985184 CCTAGGTATATGTGCAAGACTTGTAAA 59.015 37.037 16.39 7.84 0.00 2.01
2646 3040 7.125204 ACCTAGGTATATGTGCAAGACTTGTAA 59.875 37.037 14.41 3.08 0.00 2.41
2647 3041 6.610020 ACCTAGGTATATGTGCAAGACTTGTA 59.390 38.462 14.41 9.51 0.00 2.41
2648 3042 5.425539 ACCTAGGTATATGTGCAAGACTTGT 59.574 40.000 14.41 0.00 0.00 3.16
2649 3043 5.918608 ACCTAGGTATATGTGCAAGACTTG 58.081 41.667 14.41 11.02 0.00 3.16
2650 3044 5.221263 CGACCTAGGTATATGTGCAAGACTT 60.221 44.000 16.29 0.00 0.00 3.01
2651 3045 4.278669 CGACCTAGGTATATGTGCAAGACT 59.721 45.833 16.29 0.00 0.00 3.24
2652 3046 4.037684 ACGACCTAGGTATATGTGCAAGAC 59.962 45.833 16.29 0.00 0.00 3.01
2653 3047 4.212716 ACGACCTAGGTATATGTGCAAGA 58.787 43.478 16.29 0.00 0.00 3.02
2654 3048 4.585955 ACGACCTAGGTATATGTGCAAG 57.414 45.455 16.29 0.00 0.00 4.01
2655 3049 6.468333 TTAACGACCTAGGTATATGTGCAA 57.532 37.500 16.29 6.80 0.00 4.08
2656 3050 6.659745 ATTAACGACCTAGGTATATGTGCA 57.340 37.500 16.29 2.65 0.00 4.57
2657 3051 7.654520 TCAAATTAACGACCTAGGTATATGTGC 59.345 37.037 16.29 0.00 0.00 4.57
2658 3052 9.706691 ATCAAATTAACGACCTAGGTATATGTG 57.293 33.333 16.29 9.28 0.00 3.21
2659 3053 9.924650 GATCAAATTAACGACCTAGGTATATGT 57.075 33.333 16.29 8.56 0.00 2.29
2660 3054 9.923143 TGATCAAATTAACGACCTAGGTATATG 57.077 33.333 16.29 7.88 0.00 1.78
2662 3056 9.754382 GTTGATCAAATTAACGACCTAGGTATA 57.246 33.333 16.29 5.92 0.00 1.47
2663 3057 8.483758 AGTTGATCAAATTAACGACCTAGGTAT 58.516 33.333 16.29 7.00 34.34 2.73
2664 3058 7.844009 AGTTGATCAAATTAACGACCTAGGTA 58.156 34.615 16.29 0.00 34.34 3.08
2665 3059 6.708285 AGTTGATCAAATTAACGACCTAGGT 58.292 36.000 16.26 16.26 34.34 3.08
2666 3060 7.611213 AAGTTGATCAAATTAACGACCTAGG 57.389 36.000 18.88 7.41 34.34 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.