Multiple sequence alignment - TraesCS3A01G375200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G375200 chr3A 100.000 3605 0 0 1 3605 624539695 624536091 0.000000e+00 6658.0
1 TraesCS3A01G375200 chr3A 100.000 2848 0 0 3955 6802 624535741 624532894 0.000000e+00 5260.0
2 TraesCS3A01G375200 chr3B 90.760 2262 129 38 4586 6794 642821164 642818930 0.000000e+00 2946.0
3 TraesCS3A01G375200 chr3B 91.680 1274 72 16 2325 3572 642823568 642822303 0.000000e+00 1735.0
4 TraesCS3A01G375200 chr3B 84.514 1666 139 48 394 2018 642825466 642823879 0.000000e+00 1537.0
5 TraesCS3A01G375200 chr3B 94.028 653 32 4 3955 4606 642822000 642821354 0.000000e+00 983.0
6 TraesCS3A01G375200 chr3B 84.068 295 21 10 2019 2309 642823763 642823491 1.880000e-65 261.0
7 TraesCS3A01G375200 chr3B 94.444 54 2 1 5173 5225 642820673 642820620 1.570000e-11 82.4
8 TraesCS3A01G375200 chr3D 88.810 1698 112 39 5140 6802 481528407 481526753 0.000000e+00 2012.0
9 TraesCS3A01G375200 chr3D 94.216 1314 52 10 2306 3597 481531140 481529829 0.000000e+00 1984.0
10 TraesCS3A01G375200 chr3D 87.225 1683 166 28 72 1729 481533160 481531502 0.000000e+00 1871.0
11 TraesCS3A01G375200 chr3D 96.741 982 32 0 3955 4936 481529518 481528537 0.000000e+00 1637.0
12 TraesCS3A01G375200 chr3D 89.518 477 19 7 1843 2309 481531499 481531044 5.920000e-160 575.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G375200 chr3A 624532894 624539695 6801 True 5959.0 6658 100.000000 1 6802 2 chr3A.!!$R1 6801
1 TraesCS3A01G375200 chr3B 642818930 642825466 6536 True 1257.4 2946 89.915667 394 6794 6 chr3B.!!$R1 6400
2 TraesCS3A01G375200 chr3D 481526753 481533160 6407 True 1615.8 2012 91.302000 72 6802 5 chr3D.!!$R1 6730

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.039978 CGCACACGCCAAACCAAATA 60.040 50.000 0.00 0.00 33.11 1.40 F
668 674 0.105224 TCAACACACCGTCGGAACAT 59.895 50.000 20.51 0.00 0.00 2.71 F
1334 1361 0.193574 TTCTCTGTCCCAAGTCCCCT 59.806 55.000 0.00 0.00 0.00 4.79 F
2449 2615 0.177836 TGATCGCGGAATGACATGGT 59.822 50.000 6.13 0.00 0.00 3.55 F
2604 2770 1.001746 TGCATGCTATCTAGGAGCTGC 59.998 52.381 20.33 21.22 40.95 5.25 F
2664 2835 1.386533 GCCATATGCTGACTGTGCTT 58.613 50.000 0.00 0.00 36.87 3.91 F
4176 4368 1.494721 AGTTTCTTGAGTTCAGCCCCA 59.505 47.619 0.00 0.00 0.00 4.96 F
4808 5207 2.124612 TCATGGTCATGGCAGGCG 60.125 61.111 10.61 0.00 39.24 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1994 2040 0.828022 AGACAGTCAAACCGACCACA 59.172 50.000 2.66 0.0 46.69 4.17 R
2376 2542 0.249120 TCTAATGGTGCGGGTCACTG 59.751 55.000 0.00 0.0 44.98 3.66 R
2572 2738 0.596577 AGCATGCAAGCACAAGACAG 59.403 50.000 21.98 0.0 36.85 3.51 R
4434 4626 1.651737 TCTCCAACGAATCCCCTTCA 58.348 50.000 0.00 0.0 33.10 3.02 R
4518 4710 9.705103 AAGTGGTACTATGATAACAGGTTACTA 57.295 33.333 0.00 0.0 0.00 1.82 R
4655 5054 3.853671 CACGCACATAATCTTTCAAAGGC 59.146 43.478 0.00 0.0 0.00 4.35 R
5514 5917 1.112113 CTAGCTTTGGGAGGACGCTA 58.888 55.000 0.00 0.0 32.49 4.26 R
6625 7096 0.178992 CAGTTTCAGGGCAAGGGTGA 60.179 55.000 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.618287 ATCGAAGAAAGAAAACACACATCA 57.382 33.333 0.00 0.00 43.58 3.07
26 27 6.618287 TCGAAGAAAGAAAACACACATCAT 57.382 33.333 0.00 0.00 0.00 2.45
27 28 6.658831 TCGAAGAAAGAAAACACACATCATC 58.341 36.000 0.00 0.00 0.00 2.92
28 29 6.483307 TCGAAGAAAGAAAACACACATCATCT 59.517 34.615 0.00 0.00 0.00 2.90
29 30 7.012327 TCGAAGAAAGAAAACACACATCATCTT 59.988 33.333 0.00 0.00 0.00 2.40
30 31 7.322222 CGAAGAAAGAAAACACACATCATCTTC 59.678 37.037 0.00 0.00 36.27 2.87
31 32 6.974965 AGAAAGAAAACACACATCATCTTCC 58.025 36.000 0.00 0.00 0.00 3.46
32 33 5.362556 AAGAAAACACACATCATCTTCCG 57.637 39.130 0.00 0.00 0.00 4.30
33 34 3.189287 AGAAAACACACATCATCTTCCGC 59.811 43.478 0.00 0.00 0.00 5.54
34 35 2.183478 AACACACATCATCTTCCGCA 57.817 45.000 0.00 0.00 0.00 5.69
35 36 1.442769 ACACACATCATCTTCCGCAC 58.557 50.000 0.00 0.00 0.00 5.34
36 37 1.270785 ACACACATCATCTTCCGCACA 60.271 47.619 0.00 0.00 0.00 4.57
37 38 1.129251 CACACATCATCTTCCGCACAC 59.871 52.381 0.00 0.00 0.00 3.82
38 39 0.371301 CACATCATCTTCCGCACACG 59.629 55.000 0.00 0.00 39.67 4.49
39 40 1.349627 CATCATCTTCCGCACACGC 59.650 57.895 0.00 0.00 38.22 5.34
40 41 1.815421 ATCATCTTCCGCACACGCC 60.815 57.895 0.00 0.00 38.22 5.68
41 42 2.520465 ATCATCTTCCGCACACGCCA 62.520 55.000 0.00 0.00 38.22 5.69
42 43 2.031919 ATCTTCCGCACACGCCAA 59.968 55.556 0.00 0.00 38.22 4.52
43 44 1.599518 ATCTTCCGCACACGCCAAA 60.600 52.632 0.00 0.00 38.22 3.28
44 45 1.852067 ATCTTCCGCACACGCCAAAC 61.852 55.000 0.00 0.00 38.22 2.93
45 46 3.536498 CTTCCGCACACGCCAAACC 62.536 63.158 0.00 0.00 38.22 3.27
46 47 4.858680 TCCGCACACGCCAAACCA 62.859 61.111 0.00 0.00 38.22 3.67
47 48 3.893763 CCGCACACGCCAAACCAA 61.894 61.111 0.00 0.00 38.22 3.67
48 49 2.103143 CGCACACGCCAAACCAAA 59.897 55.556 0.00 0.00 33.11 3.28
49 50 1.299773 CGCACACGCCAAACCAAAT 60.300 52.632 0.00 0.00 33.11 2.32
50 51 0.039978 CGCACACGCCAAACCAAATA 60.040 50.000 0.00 0.00 33.11 1.40
51 52 1.600663 CGCACACGCCAAACCAAATAA 60.601 47.619 0.00 0.00 33.11 1.40
52 53 1.790043 GCACACGCCAAACCAAATAAC 59.210 47.619 0.00 0.00 0.00 1.89
53 54 2.799917 GCACACGCCAAACCAAATAACA 60.800 45.455 0.00 0.00 0.00 2.41
54 55 3.448686 CACACGCCAAACCAAATAACAA 58.551 40.909 0.00 0.00 0.00 2.83
55 56 3.865745 CACACGCCAAACCAAATAACAAA 59.134 39.130 0.00 0.00 0.00 2.83
56 57 4.330074 CACACGCCAAACCAAATAACAAAA 59.670 37.500 0.00 0.00 0.00 2.44
57 58 4.935808 ACACGCCAAACCAAATAACAAAAA 59.064 33.333 0.00 0.00 0.00 1.94
80 81 3.503827 GGAAATCCCAACAATTCCGAC 57.496 47.619 0.00 0.00 32.72 4.79
86 87 7.255139 GGAAATCCCAACAATTCCGACTATAAG 60.255 40.741 0.00 0.00 32.72 1.73
92 93 7.599245 CCCAACAATTCCGACTATAAGATACTC 59.401 40.741 0.00 0.00 0.00 2.59
108 109 5.491982 AGATACTCCAAAACAGATGTGGTC 58.508 41.667 0.00 0.00 33.88 4.02
109 110 2.494059 ACTCCAAAACAGATGTGGTCG 58.506 47.619 0.00 0.00 33.88 4.79
114 115 0.951558 AAACAGATGTGGTCGGCAAC 59.048 50.000 0.00 0.00 0.00 4.17
115 116 0.108585 AACAGATGTGGTCGGCAACT 59.891 50.000 0.00 0.00 0.00 3.16
123 124 2.223688 TGTGGTCGGCAACTTCAAATTG 60.224 45.455 0.00 0.00 0.00 2.32
125 126 2.428890 TGGTCGGCAACTTCAAATTGTT 59.571 40.909 0.00 0.00 0.00 2.83
128 129 4.226761 GTCGGCAACTTCAAATTGTTAGG 58.773 43.478 0.00 0.00 0.00 2.69
136 137 8.620416 GCAACTTCAAATTGTTAGGGAATTTTT 58.380 29.630 0.00 0.00 31.96 1.94
139 140 9.546428 ACTTCAAATTGTTAGGGAATTTTTCTG 57.454 29.630 0.00 0.00 31.96 3.02
142 143 9.541143 TCAAATTGTTAGGGAATTTTTCTGTTC 57.459 29.630 0.00 0.00 31.96 3.18
165 167 9.045223 GTTCATTGCAAAGAACCTTTTTCTAAT 57.955 29.630 28.63 0.00 38.49 1.73
170 172 9.877178 TTGCAAAGAACCTTTTTCTAATAACAA 57.123 25.926 0.00 0.00 0.00 2.83
200 204 8.682016 GTCGTATGCATATAAAGAAACAATTGC 58.318 33.333 10.16 0.00 0.00 3.56
202 206 9.018716 CGTATGCATATAAAGAAACAATTGCAA 57.981 29.630 10.16 0.00 41.58 4.08
227 231 5.103686 AGGCCCCTGCAAGATAGTAAAATAA 60.104 40.000 0.00 0.00 40.13 1.40
229 233 6.267699 GGCCCCTGCAAGATAGTAAAATAATT 59.732 38.462 0.00 0.00 40.13 1.40
232 236 8.793592 CCCCTGCAAGATAGTAAAATAATTACC 58.206 37.037 0.00 0.00 34.07 2.85
233 237 9.349713 CCCTGCAAGATAGTAAAATAATTACCA 57.650 33.333 0.00 0.00 34.07 3.25
252 256 3.323979 ACCACTAACTTCCAACGAGATGT 59.676 43.478 0.00 0.00 0.00 3.06
276 280 4.343814 TGTCTACAAGAACCACTCACATGA 59.656 41.667 0.00 0.00 0.00 3.07
277 281 8.892845 GTTGTCTACAAGAACCACTCACATGAG 61.893 44.444 7.36 7.36 41.13 2.90
282 286 4.963318 AGAACCACTCACATGAGAAAGA 57.037 40.909 15.76 0.00 44.74 2.52
286 290 5.041191 ACCACTCACATGAGAAAGAACTT 57.959 39.130 15.76 0.00 44.74 2.66
298 302 5.006358 TGAGAAAGAACTTCGTTGTAGCAAC 59.994 40.000 2.22 2.22 39.22 4.17
308 312 2.923655 CGTTGTAGCAACGAGTCATCAT 59.076 45.455 24.41 0.00 45.64 2.45
311 315 3.925379 TGTAGCAACGAGTCATCATTGT 58.075 40.909 0.00 0.00 0.00 2.71
312 316 3.926527 TGTAGCAACGAGTCATCATTGTC 59.073 43.478 0.00 0.00 0.00 3.18
318 322 1.725641 GAGTCATCATTGTCGCCACA 58.274 50.000 0.00 0.00 0.00 4.17
321 325 2.076100 GTCATCATTGTCGCCACAAGA 58.924 47.619 2.71 1.45 45.85 3.02
325 329 2.143122 TCATTGTCGCCACAAGAACTC 58.857 47.619 2.71 0.00 45.85 3.01
341 345 5.053978 AGAACTCCACCAAGTGAATTCTT 57.946 39.130 7.05 0.00 35.23 2.52
351 355 6.914757 CACCAAGTGAATTCTTCTTCAGTTTC 59.085 38.462 7.05 0.00 43.10 2.78
358 362 9.230932 GTGAATTCTTCTTCAGTTTCTTGAAAG 57.769 33.333 7.05 0.00 36.69 2.62
364 369 7.824289 TCTTCTTCAGTTTCTTGAAAGACTTCA 59.176 33.333 0.00 0.00 39.87 3.02
367 372 6.436843 TCAGTTTCTTGAAAGACTTCAACC 57.563 37.500 0.00 0.00 44.76 3.77
371 376 4.086706 TCTTGAAAGACTTCAACCCTCC 57.913 45.455 0.00 0.00 44.76 4.30
372 377 3.716872 TCTTGAAAGACTTCAACCCTCCT 59.283 43.478 0.00 0.00 44.76 3.69
374 379 2.155279 GAAAGACTTCAACCCTCCTGC 58.845 52.381 0.00 0.00 0.00 4.85
376 381 1.002011 GACTTCAACCCTCCTGCCC 60.002 63.158 0.00 0.00 0.00 5.36
380 385 2.672996 CAACCCTCCTGCCCGTTG 60.673 66.667 0.00 0.00 0.00 4.10
400 405 1.741770 GGTAGCGAGTGCACCTTGG 60.742 63.158 14.63 0.00 46.23 3.61
401 406 1.004918 GTAGCGAGTGCACCTTGGT 60.005 57.895 14.63 11.66 46.23 3.67
403 408 2.486636 TAGCGAGTGCACCTTGGTCG 62.487 60.000 14.63 16.71 46.23 4.79
414 419 1.691976 ACCTTGGTCGTGACATCAAGA 59.308 47.619 15.95 0.00 38.96 3.02
422 427 3.381908 GTCGTGACATCAAGATCCTAGGT 59.618 47.826 9.08 0.00 36.79 3.08
423 428 3.632604 TCGTGACATCAAGATCCTAGGTC 59.367 47.826 9.08 5.97 29.71 3.85
424 429 3.549019 CGTGACATCAAGATCCTAGGTCG 60.549 52.174 9.08 0.00 0.00 4.79
425 430 2.362397 TGACATCAAGATCCTAGGTCGC 59.638 50.000 9.08 0.00 0.00 5.19
428 434 2.145397 TCAAGATCCTAGGTCGCAGT 57.855 50.000 9.08 0.00 0.00 4.40
438 444 1.290324 GGTCGCAGTGAGCTTCTCA 59.710 57.895 5.89 0.00 41.93 3.27
440 446 0.787183 GTCGCAGTGAGCTTCTCAAC 59.213 55.000 0.00 0.00 42.46 3.18
441 447 0.319900 TCGCAGTGAGCTTCTCAACC 60.320 55.000 0.00 0.00 42.46 3.77
443 449 0.871057 GCAGTGAGCTTCTCAACCAC 59.129 55.000 0.00 0.00 42.46 4.16
448 454 1.270305 TGAGCTTCTCAACCACGAAGG 60.270 52.381 0.00 0.00 37.57 3.46
457 463 0.106918 AACCACGAAGGAAAGCACCA 60.107 50.000 5.70 0.00 41.22 4.17
458 464 0.110486 ACCACGAAGGAAAGCACCAT 59.890 50.000 5.70 0.00 41.22 3.55
460 466 1.611673 CCACGAAGGAAAGCACCATCT 60.612 52.381 0.00 0.00 41.22 2.90
477 483 3.939837 CTGCTGCCGCCGAGAAAGA 62.940 63.158 0.00 0.00 34.43 2.52
501 507 7.927629 AGAAAAAGCAATCTCTATTGTGCAAAA 59.072 29.630 0.00 0.00 43.75 2.44
502 508 7.647907 AAAAGCAATCTCTATTGTGCAAAAG 57.352 32.000 0.00 0.00 43.75 2.27
512 518 7.665559 TCTCTATTGTGCAAAAGGAACTAACAT 59.334 33.333 0.00 0.00 38.49 2.71
514 520 4.846779 TGTGCAAAAGGAACTAACATCC 57.153 40.909 0.00 0.00 38.49 3.51
521 527 6.071616 GCAAAAGGAACTAACATCCCACATAA 60.072 38.462 0.00 0.00 38.49 1.90
544 550 0.684805 AACCAAAGGTTCAACCGGCA 60.685 50.000 0.00 0.00 43.05 5.69
549 555 1.770294 AAGGTTCAACCGGCAAAGAA 58.230 45.000 0.00 0.00 44.90 2.52
554 560 0.394488 TCAACCGGCAAAGAACCACA 60.394 50.000 0.00 0.00 0.00 4.17
555 561 0.457851 CAACCGGCAAAGAACCACAA 59.542 50.000 0.00 0.00 0.00 3.33
569 575 1.348064 CCACAACTACTCACTCCCCA 58.652 55.000 0.00 0.00 0.00 4.96
571 577 1.971357 CACAACTACTCACTCCCCACT 59.029 52.381 0.00 0.00 0.00 4.00
578 584 1.538629 TCACTCCCCACTGATGGCA 60.539 57.895 0.00 0.00 45.76 4.92
604 610 1.217882 CACACCGTCAGAACAGGAAC 58.782 55.000 0.00 0.00 0.00 3.62
605 611 0.249322 ACACCGTCAGAACAGGAACG 60.249 55.000 0.00 0.00 0.00 3.95
663 669 1.663702 GGTCTCAACACACCGTCGG 60.664 63.158 10.48 10.48 0.00 4.79
668 674 0.105224 TCAACACACCGTCGGAACAT 59.895 50.000 20.51 0.00 0.00 2.71
682 688 1.993370 GGAACATGAACGAAGTCGGAG 59.007 52.381 0.00 0.00 45.00 4.63
687 693 2.846039 TGAACGAAGTCGGAGCTATC 57.154 50.000 5.60 0.00 45.00 2.08
707 714 3.879998 TCAGAAGCACAGTTAAACACCA 58.120 40.909 0.00 0.00 0.00 4.17
718 725 6.765512 CACAGTTAAACACCATTTTTGGGATT 59.234 34.615 0.00 0.00 0.00 3.01
720 727 8.655901 ACAGTTAAACACCATTTTTGGGATTAT 58.344 29.630 0.00 0.00 0.00 1.28
721 728 9.500785 CAGTTAAACACCATTTTTGGGATTATT 57.499 29.630 0.00 0.00 0.00 1.40
727 734 9.853177 AACACCATTTTTGGGATTATTAAAACA 57.147 25.926 0.00 0.00 0.00 2.83
750 758 3.963383 TTTCTTGGAGACGCAAAGAAC 57.037 42.857 8.14 0.00 39.10 3.01
755 763 2.571212 TGGAGACGCAAAGAACATTGT 58.429 42.857 0.00 0.00 32.80 2.71
840 859 1.025113 GGAGCTGGGCTAAAACGGAC 61.025 60.000 0.00 0.00 39.88 4.79
853 872 3.710722 CGGACTTGCTCAGGGCCT 61.711 66.667 0.00 0.00 40.92 5.19
861 880 1.050988 TGCTCAGGGCCTAGATCCAC 61.051 60.000 5.28 0.00 40.92 4.02
868 887 0.824759 GGCCTAGATCCACTGACGTT 59.175 55.000 0.00 0.00 0.00 3.99
871 890 2.738964 GCCTAGATCCACTGACGTTTCC 60.739 54.545 0.00 0.00 0.00 3.13
872 891 2.761208 CCTAGATCCACTGACGTTTCCT 59.239 50.000 0.00 0.00 0.00 3.36
874 893 1.550976 AGATCCACTGACGTTTCCTCC 59.449 52.381 0.00 0.00 0.00 4.30
875 894 1.275291 GATCCACTGACGTTTCCTCCA 59.725 52.381 0.00 0.00 0.00 3.86
876 895 1.124780 TCCACTGACGTTTCCTCCAA 58.875 50.000 0.00 0.00 0.00 3.53
877 896 1.487142 TCCACTGACGTTTCCTCCAAA 59.513 47.619 0.00 0.00 0.00 3.28
878 897 2.092861 TCCACTGACGTTTCCTCCAAAA 60.093 45.455 0.00 0.00 0.00 2.44
879 898 2.685897 CCACTGACGTTTCCTCCAAAAA 59.314 45.455 0.00 0.00 0.00 1.94
909 928 7.373778 AGTAATCTCGTAACCAACAAAATCC 57.626 36.000 0.00 0.00 0.00 3.01
910 929 7.166167 AGTAATCTCGTAACCAACAAAATCCT 58.834 34.615 0.00 0.00 0.00 3.24
913 932 4.758165 TCTCGTAACCAACAAAATCCTTCC 59.242 41.667 0.00 0.00 0.00 3.46
915 934 3.824443 CGTAACCAACAAAATCCTTCCCT 59.176 43.478 0.00 0.00 0.00 4.20
916 935 4.082949 CGTAACCAACAAAATCCTTCCCTC 60.083 45.833 0.00 0.00 0.00 4.30
917 936 3.611025 ACCAACAAAATCCTTCCCTCA 57.389 42.857 0.00 0.00 0.00 3.86
1156 1183 1.732732 GCACTGAATCTGTCTACGCGT 60.733 52.381 19.17 19.17 0.00 6.01
1323 1350 1.738350 TCATCCGACTCGTTCTCTGTC 59.262 52.381 0.00 0.00 0.00 3.51
1330 1357 1.614413 ACTCGTTCTCTGTCCCAAGTC 59.386 52.381 0.00 0.00 0.00 3.01
1334 1361 0.193574 TTCTCTGTCCCAAGTCCCCT 59.806 55.000 0.00 0.00 0.00 4.79
1405 1432 6.915843 GTGGTTCTGTACGAATTGATTGTTTT 59.084 34.615 0.00 0.00 33.45 2.43
1406 1433 7.112984 GTGGTTCTGTACGAATTGATTGTTTTC 59.887 37.037 0.00 0.00 33.45 2.29
1415 1442 7.881142 ACGAATTGATTGTTTTCTTATGTCCA 58.119 30.769 0.00 0.00 0.00 4.02
1423 1451 3.992943 TTTCTTATGTCCATCGGGTGT 57.007 42.857 0.00 0.00 34.93 4.16
1442 1470 3.255642 GTGTTGCCAATTCCTAGAGCAAA 59.744 43.478 0.00 0.00 44.32 3.68
1450 1478 1.651987 TCCTAGAGCAAATTTCGCCG 58.348 50.000 8.41 0.00 0.00 6.46
1455 1483 0.663153 GAGCAAATTTCGCCGGCTAT 59.337 50.000 26.68 12.31 34.44 2.97
1512 1540 9.069082 TCAATTTATGAACTCCGGTTTCTTAAA 57.931 29.630 24.69 24.69 35.58 1.52
1542 1570 5.353123 TCCGACATTGGAAATTAGTAACAGC 59.647 40.000 0.00 0.00 34.30 4.40
1579 1607 0.659427 CAGTGGTGTGCACACTCTTG 59.341 55.000 40.20 30.77 45.50 3.02
1655 1691 4.091075 GGGCTAAGTACGACGAAAGAAAAG 59.909 45.833 0.00 0.00 0.00 2.27
1687 1723 4.794248 TGAACAGTTCTGAATGTTGTCG 57.206 40.909 14.51 0.00 39.66 4.35
1692 1728 4.634004 ACAGTTCTGAATGTTGTCGTGAAA 59.366 37.500 6.83 0.00 0.00 2.69
1741 1777 0.997196 GGACAATACGAAGACGGTGC 59.003 55.000 0.00 0.00 44.46 5.01
1743 1779 0.606604 ACAATACGAAGACGGTGCCT 59.393 50.000 0.00 0.00 44.46 4.75
1744 1780 0.999406 CAATACGAAGACGGTGCCTG 59.001 55.000 0.00 0.00 44.46 4.85
1747 1783 0.319211 TACGAAGACGGTGCCTGTTG 60.319 55.000 0.00 0.00 44.46 3.33
1757 1793 1.672030 TGCCTGTTGGATCGCACAG 60.672 57.895 13.57 13.57 40.23 3.66
1778 1814 5.248477 ACAGAATAGGCTGTGTTTCTAAGGA 59.752 40.000 0.00 0.00 46.72 3.36
1782 1818 1.613520 GGCTGTGTTTCTAAGGACCCC 60.614 57.143 0.00 0.00 0.00 4.95
1808 1844 4.373116 TCCCCGTGCGACTTCAGC 62.373 66.667 0.00 0.00 0.00 4.26
1826 1862 4.755411 TCAGCGGAGGTTCTAATAGTTTG 58.245 43.478 0.00 0.00 33.74 2.93
1977 2023 1.340991 TGCCTTAGATCACCTTTGGGC 60.341 52.381 0.00 0.00 38.87 5.36
1994 2040 4.810191 TGGGCTGTTTGTAGTTGTTTTT 57.190 36.364 0.00 0.00 0.00 1.94
2204 2369 2.288334 TGCATTGCTCACACCAATTCAC 60.288 45.455 10.49 0.00 30.90 3.18
2253 2419 7.618137 ACATACTCTAAATACGGGTGAGTTTT 58.382 34.615 0.00 0.00 38.67 2.43
2267 2433 7.013846 ACGGGTGAGTTTTTAATTCATTCAAGA 59.986 33.333 0.00 0.00 0.00 3.02
2284 2450 6.691754 TTCAAGAAACACAGCAAGATTGTA 57.308 33.333 0.00 0.00 0.00 2.41
2285 2451 6.304356 TCAAGAAACACAGCAAGATTGTAG 57.696 37.500 0.00 0.00 0.00 2.74
2286 2452 5.822519 TCAAGAAACACAGCAAGATTGTAGT 59.177 36.000 0.00 0.00 0.00 2.73
2287 2453 5.679734 AGAAACACAGCAAGATTGTAGTG 57.320 39.130 13.99 13.99 39.36 2.74
2288 2454 5.368145 AGAAACACAGCAAGATTGTAGTGA 58.632 37.500 19.27 0.00 37.98 3.41
2289 2455 5.237344 AGAAACACAGCAAGATTGTAGTGAC 59.763 40.000 19.27 12.61 37.98 3.67
2290 2456 3.403038 ACACAGCAAGATTGTAGTGACC 58.597 45.455 19.27 0.00 37.98 4.02
2291 2457 2.744202 CACAGCAAGATTGTAGTGACCC 59.256 50.000 11.56 0.00 37.30 4.46
2292 2458 2.002586 CAGCAAGATTGTAGTGACCCG 58.997 52.381 0.00 0.00 0.00 5.28
2293 2459 0.727398 GCAAGATTGTAGTGACCCGC 59.273 55.000 0.00 0.00 0.00 6.13
2294 2460 1.943968 GCAAGATTGTAGTGACCCGCA 60.944 52.381 0.00 0.00 0.00 5.69
2303 2469 2.763651 GTGACCCGCACCATTAGAC 58.236 57.895 0.00 0.00 41.78 2.59
2304 2470 0.249398 GTGACCCGCACCATTAGACT 59.751 55.000 0.00 0.00 41.78 3.24
2305 2471 0.981183 TGACCCGCACCATTAGACTT 59.019 50.000 0.00 0.00 0.00 3.01
2306 2472 1.066430 TGACCCGCACCATTAGACTTC 60.066 52.381 0.00 0.00 0.00 3.01
2307 2473 1.207329 GACCCGCACCATTAGACTTCT 59.793 52.381 0.00 0.00 0.00 2.85
2308 2474 1.066143 ACCCGCACCATTAGACTTCTG 60.066 52.381 0.00 0.00 0.00 3.02
2309 2475 1.066143 CCCGCACCATTAGACTTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
2310 2476 2.271800 CCGCACCATTAGACTTCTGTC 58.728 52.381 0.00 0.00 43.22 3.51
2342 2508 9.374838 ACTTAACATACTTTAAATACGGGTGAG 57.625 33.333 0.00 0.00 0.00 3.51
2343 2509 9.374838 CTTAACATACTTTAAATACGGGTGAGT 57.625 33.333 0.00 0.00 0.00 3.41
2344 2510 9.723601 TTAACATACTTTAAATACGGGTGAGTT 57.276 29.630 0.00 0.00 0.00 3.01
2345 2511 7.838771 ACATACTTTAAATACGGGTGAGTTC 57.161 36.000 0.00 0.00 0.00 3.01
2346 2512 7.618137 ACATACTTTAAATACGGGTGAGTTCT 58.382 34.615 0.00 0.00 0.00 3.01
2347 2513 8.098912 ACATACTTTAAATACGGGTGAGTTCTT 58.901 33.333 0.00 0.00 0.00 2.52
2348 2514 9.590451 CATACTTTAAATACGGGTGAGTTCTTA 57.410 33.333 0.00 0.00 0.00 2.10
2351 2517 9.511272 ACTTTAAATACGGGTGAGTTCTTAATT 57.489 29.630 0.00 0.00 0.00 1.40
2352 2518 9.983804 CTTTAAATACGGGTGAGTTCTTAATTC 57.016 33.333 0.00 0.00 0.00 2.17
2353 2519 9.504708 TTTAAATACGGGTGAGTTCTTAATTCA 57.495 29.630 0.00 0.00 0.00 2.57
2354 2520 9.675464 TTAAATACGGGTGAGTTCTTAATTCAT 57.325 29.630 0.00 0.00 29.55 2.57
2355 2521 8.575649 AAATACGGGTGAGTTCTTAATTCATT 57.424 30.769 0.00 0.00 29.55 2.57
2356 2522 7.787725 ATACGGGTGAGTTCTTAATTCATTC 57.212 36.000 0.00 0.00 29.55 2.67
2357 2523 5.556915 ACGGGTGAGTTCTTAATTCATTCA 58.443 37.500 0.00 0.00 29.55 2.57
2358 2524 6.001460 ACGGGTGAGTTCTTAATTCATTCAA 58.999 36.000 0.00 0.00 29.55 2.69
2359 2525 6.149474 ACGGGTGAGTTCTTAATTCATTCAAG 59.851 38.462 0.00 0.00 29.55 3.02
2360 2526 6.371548 CGGGTGAGTTCTTAATTCATTCAAGA 59.628 38.462 0.00 0.00 29.55 3.02
2361 2527 7.094805 CGGGTGAGTTCTTAATTCATTCAAGAA 60.095 37.037 0.00 0.00 36.27 2.52
2362 2528 8.576442 GGGTGAGTTCTTAATTCATTCAAGAAA 58.424 33.333 2.64 0.00 39.34 2.52
2363 2529 9.399403 GGTGAGTTCTTAATTCATTCAAGAAAC 57.601 33.333 2.64 0.00 39.34 2.78
2368 2534 9.122613 GTTCTTAATTCATTCAAGAAACTCAGC 57.877 33.333 2.64 0.00 39.34 4.26
2369 2535 8.394971 TCTTAATTCATTCAAGAAACTCAGCA 57.605 30.769 0.00 0.00 0.00 4.41
2370 2536 8.849168 TCTTAATTCATTCAAGAAACTCAGCAA 58.151 29.630 0.00 0.00 0.00 3.91
2371 2537 9.125906 CTTAATTCATTCAAGAAACTCAGCAAG 57.874 33.333 0.00 0.00 0.00 4.01
2372 2538 6.889301 ATTCATTCAAGAAACTCAGCAAGA 57.111 33.333 0.00 0.00 0.00 3.02
2373 2539 6.889301 TTCATTCAAGAAACTCAGCAAGAT 57.111 33.333 0.00 0.00 0.00 2.40
2374 2540 6.889301 TCATTCAAGAAACTCAGCAAGATT 57.111 33.333 0.00 0.00 0.00 2.40
2375 2541 6.675026 TCATTCAAGAAACTCAGCAAGATTG 58.325 36.000 0.00 0.00 0.00 2.67
2411 2577 5.103473 ACCATTAGACTCTGGATCCTACTGA 60.103 44.000 14.23 5.35 36.35 3.41
2417 2583 3.634448 ACTCTGGATCCTACTGATTCGTG 59.366 47.826 14.23 0.00 30.71 4.35
2420 2586 3.096852 TGGATCCTACTGATTCGTGTGT 58.903 45.455 14.23 0.00 30.71 3.72
2422 2588 3.865745 GGATCCTACTGATTCGTGTGTTG 59.134 47.826 3.84 0.00 32.41 3.33
2449 2615 0.177836 TGATCGCGGAATGACATGGT 59.822 50.000 6.13 0.00 0.00 3.55
2500 2666 6.140896 CACTTTGTGTGTACTGTTCTATCG 57.859 41.667 0.00 0.00 41.53 2.92
2503 2669 6.200286 ACTTTGTGTGTACTGTTCTATCGTTG 59.800 38.462 0.00 0.00 0.00 4.10
2517 2683 4.875536 TCTATCGTTGATTCACACCCATTG 59.124 41.667 0.00 0.00 0.00 2.82
2572 2738 8.420374 TCGTGTTACTTTTCATTCTCCATATC 57.580 34.615 0.00 0.00 0.00 1.63
2604 2770 1.001746 TGCATGCTATCTAGGAGCTGC 59.998 52.381 20.33 21.22 40.95 5.25
2607 2773 3.869140 GCATGCTATCTAGGAGCTGCATT 60.869 47.826 22.11 0.00 40.61 3.56
2657 2828 1.952296 CCTTCTTGGCCATATGCTGAC 59.048 52.381 6.09 0.00 40.92 3.51
2664 2835 1.386533 GCCATATGCTGACTGTGCTT 58.613 50.000 0.00 0.00 36.87 3.91
2750 2921 3.374058 CAGAGAAAATTGTTATCCGGCGT 59.626 43.478 6.01 0.00 0.00 5.68
2899 3080 7.217200 TCCCTGCAGAGTAACATAAATGTATC 58.783 38.462 17.39 0.00 40.80 2.24
3251 3434 8.902540 TTATAAGTTGCATGTATAACTGGAGG 57.097 34.615 11.20 0.00 37.23 4.30
3329 3512 5.620206 ACTGGCATATATTTCGTCATCCAA 58.380 37.500 0.00 0.00 0.00 3.53
3469 3660 5.940192 TCAGCTCATGTTATGTTTTTCGT 57.060 34.783 0.00 0.00 0.00 3.85
3582 3773 3.350219 TCCTTCATTGCCCAGTAAGAC 57.650 47.619 0.00 0.00 0.00 3.01
3594 3785 4.280174 GCCCAGTAAGACGTCCTTGATATA 59.720 45.833 13.01 0.00 36.34 0.86
3597 3788 6.040616 CCCAGTAAGACGTCCTTGATATAACT 59.959 42.308 13.01 2.93 36.34 2.24
3599 3790 6.918569 CAGTAAGACGTCCTTGATATAACTGG 59.081 42.308 13.01 0.00 33.51 4.00
3600 3791 6.832384 AGTAAGACGTCCTTGATATAACTGGA 59.168 38.462 13.01 0.00 36.34 3.86
3601 3792 6.732896 AAGACGTCCTTGATATAACTGGAT 57.267 37.500 13.01 0.00 32.92 3.41
3602 3793 7.834881 AAGACGTCCTTGATATAACTGGATA 57.165 36.000 13.01 0.00 32.92 2.59
3603 3794 7.216973 AGACGTCCTTGATATAACTGGATAC 57.783 40.000 13.01 0.00 0.00 2.24
3604 3795 7.287005 AAGACGTCCTTGATATAACTGGATACA 59.713 37.037 13.01 0.00 37.87 2.29
4140 4332 7.361799 CCTTGTAAAAAGGCACAGAGGTAATAC 60.362 40.741 0.00 0.00 0.00 1.89
4176 4368 1.494721 AGTTTCTTGAGTTCAGCCCCA 59.505 47.619 0.00 0.00 0.00 4.96
4199 4391 9.301153 CCCAATGTAAAATAGCAGTAAAATGTC 57.699 33.333 0.00 0.00 0.00 3.06
4260 4452 2.511218 AGATGACCTGGTGCATGGTATT 59.489 45.455 2.82 1.11 36.59 1.89
4261 4453 2.418368 TGACCTGGTGCATGGTATTC 57.582 50.000 2.82 0.00 36.59 1.75
4265 4457 3.877508 GACCTGGTGCATGGTATTCTAAC 59.122 47.826 2.82 0.00 36.59 2.34
4397 4589 2.962859 AGAACTTGGGCAATCTTTGGT 58.037 42.857 0.00 0.00 0.00 3.67
4434 4626 2.194201 TTAAGCTTTTAGGCGCCTGT 57.806 45.000 38.98 17.24 37.29 4.00
4518 4710 7.394359 TCAATAAAGCTGCAAAGAGAGGTAATT 59.606 33.333 1.02 0.00 0.00 1.40
4655 5054 8.214721 ACAACCTTCTCTTTAACTTTGAAGAG 57.785 34.615 14.43 14.43 46.41 2.85
4808 5207 2.124612 TCATGGTCATGGCAGGCG 60.125 61.111 10.61 0.00 39.24 5.52
4954 5353 8.141268 ACATGGCGTAATAATTTAGGGAAAATG 58.859 33.333 0.00 0.00 37.85 2.32
4991 5393 9.626045 GTTTTTCACCTTTCAGGATAATAACTG 57.374 33.333 0.00 0.00 37.67 3.16
5025 5428 6.658849 GGGCCTACCAATTTAAAAATTCCAT 58.341 36.000 0.84 0.00 36.52 3.41
5098 5501 5.299782 GTCCTTGTAGTGTCGATCCTATTCT 59.700 44.000 0.00 0.00 0.00 2.40
5103 5506 7.260558 TGTAGTGTCGATCCTATTCTTACTG 57.739 40.000 0.00 0.00 0.00 2.74
5146 5549 9.894783 GTTCTTTTTACCCTGAGAAGTTTATTC 57.105 33.333 0.00 0.00 0.00 1.75
5224 5627 6.187727 AGTTCATGAACCCTGAGAAGTTTA 57.812 37.500 30.34 0.00 42.06 2.01
5232 5635 2.561419 CCCTGAGAAGTTTACCGAGTCA 59.439 50.000 0.00 0.00 0.00 3.41
5290 5693 3.066064 GGATCTATATGTCGAGCGAGCAT 59.934 47.826 0.00 10.87 0.00 3.79
5406 5809 6.752351 AGCACATAGTTAGTGTAATGAACGAG 59.248 38.462 0.00 0.00 39.17 4.18
5487 5890 2.204237 GCCAAAGGTCAAGCAAAGTTG 58.796 47.619 0.00 0.00 0.00 3.16
5514 5917 0.815213 ATATTGCTGATGCGTGGCGT 60.815 50.000 0.00 0.00 43.34 5.68
5572 5975 1.686355 ATCGAAACTGTGTTTGCCCA 58.314 45.000 0.10 0.00 0.00 5.36
5596 6000 2.159627 GTGTTTGAGATAGTGGTTGGCG 59.840 50.000 0.00 0.00 0.00 5.69
5606 6010 0.317854 GTGGTTGGCGCTTTGAGTTC 60.318 55.000 7.64 0.00 0.00 3.01
5657 6061 8.771920 TGACAGTGGTTCATGTATACTTAAAG 57.228 34.615 4.17 0.00 0.00 1.85
5662 6066 8.548877 AGTGGTTCATGTATACTTAAAGGTGAT 58.451 33.333 4.17 0.00 0.00 3.06
5676 6080 2.165167 AGGTGATGGTTGACAATGCTG 58.835 47.619 0.00 0.00 0.00 4.41
5677 6081 2.161855 GGTGATGGTTGACAATGCTGA 58.838 47.619 0.00 0.00 0.00 4.26
5695 6099 9.229784 CAATGCTGAAGTTGTTATATTGACATC 57.770 33.333 0.00 0.00 0.00 3.06
5712 6116 3.408634 ACATCTTTTCCTTACCGTGTGG 58.591 45.455 0.00 0.00 42.84 4.17
5875 6285 5.312079 AGAACATGAAAGGAGACCTTGAAG 58.688 41.667 0.00 0.00 43.92 3.02
5878 6288 5.885465 ACATGAAAGGAGACCTTGAAGAAT 58.115 37.500 0.00 0.00 43.92 2.40
5879 6289 7.020827 ACATGAAAGGAGACCTTGAAGAATA 57.979 36.000 0.00 0.00 43.92 1.75
5880 6290 6.881602 ACATGAAAGGAGACCTTGAAGAATAC 59.118 38.462 0.00 0.00 43.92 1.89
5881 6291 6.688073 TGAAAGGAGACCTTGAAGAATACT 57.312 37.500 3.73 0.00 43.92 2.12
5914 6325 9.725019 TTACAAGTTGTATCAACAGAGAATGAT 57.275 29.630 16.26 0.00 39.50 2.45
5938 6349 2.239402 TCCTGCTGCATCATGTTCCTTA 59.761 45.455 1.31 0.00 0.00 2.69
5939 6350 3.018856 CCTGCTGCATCATGTTCCTTAA 58.981 45.455 1.31 0.00 0.00 1.85
5964 6375 6.264832 TCACTGTCAAACTTGCACAATTTAG 58.735 36.000 0.00 0.00 0.00 1.85
5977 6388 4.913924 GCACAATTTAGCAGACTTGTCAAG 59.086 41.667 11.17 11.17 29.74 3.02
5979 6390 6.498304 CACAATTTAGCAGACTTGTCAAGTT 58.502 36.000 19.09 6.30 43.03 2.66
6106 6517 2.602257 TCATAGCACCGTTCCTGATG 57.398 50.000 0.00 0.00 0.00 3.07
6130 6541 1.515521 GGAACACAAACCCAGAGCCG 61.516 60.000 0.00 0.00 0.00 5.52
6133 6544 1.071471 CACAAACCCAGAGCCGTCT 59.929 57.895 0.00 0.00 0.00 4.18
6248 6659 1.317613 GTCCACCTGTTTGCACATGA 58.682 50.000 0.00 0.00 30.39 3.07
6261 6675 8.429493 TGTTTGCACATGAAAAATTGTATCAA 57.571 26.923 0.00 0.00 0.00 2.57
6268 6682 8.918658 CACATGAAAAATTGTATCAACTGAAGG 58.081 33.333 0.00 0.00 0.00 3.46
6269 6683 8.641541 ACATGAAAAATTGTATCAACTGAAGGT 58.358 29.630 0.00 0.00 0.00 3.50
6413 6873 4.415881 TCAGTTCTACCAAGCAGTTCAA 57.584 40.909 0.00 0.00 0.00 2.69
6433 6893 1.346068 ACTGAAGGTCCAAGCTGAGAC 59.654 52.381 7.68 7.68 0.00 3.36
6434 6894 1.622811 CTGAAGGTCCAAGCTGAGACT 59.377 52.381 14.22 0.00 33.39 3.24
6441 6901 2.760092 GTCCAAGCTGAGACTGAGAGAT 59.240 50.000 8.74 0.00 0.00 2.75
6443 6903 4.400884 GTCCAAGCTGAGACTGAGAGATAA 59.599 45.833 8.74 0.00 0.00 1.75
6444 6904 4.644234 TCCAAGCTGAGACTGAGAGATAAG 59.356 45.833 0.00 0.00 0.00 1.73
6445 6905 4.644234 CCAAGCTGAGACTGAGAGATAAGA 59.356 45.833 0.00 0.00 0.00 2.10
6446 6906 5.450412 CCAAGCTGAGACTGAGAGATAAGAC 60.450 48.000 0.00 0.00 0.00 3.01
6447 6907 4.207165 AGCTGAGACTGAGAGATAAGACC 58.793 47.826 0.00 0.00 0.00 3.85
6450 6910 4.531854 TGAGACTGAGAGATAAGACCAGG 58.468 47.826 0.00 0.00 0.00 4.45
6451 6911 3.295973 AGACTGAGAGATAAGACCAGGC 58.704 50.000 0.00 0.00 33.24 4.85
6452 6912 3.027412 GACTGAGAGATAAGACCAGGCA 58.973 50.000 0.00 0.00 33.29 4.75
6453 6913 3.640967 GACTGAGAGATAAGACCAGGCAT 59.359 47.826 0.00 0.00 33.29 4.40
6476 6942 2.002586 CATACTCCAACACGGCTCAAG 58.997 52.381 0.00 0.00 33.14 3.02
6515 6986 1.270839 TGAAAGAGCAACCCCTCGAAG 60.271 52.381 0.00 0.00 36.95 3.79
6536 7007 3.849953 GCGACGTCGATGTTGGCC 61.850 66.667 39.74 16.64 43.02 5.36
6654 7125 0.674895 CCTGAAACTGGGGAGCTTCG 60.675 60.000 0.00 0.00 0.00 3.79
6665 7136 3.028366 GAGCTTCGCGGCCTTGTTC 62.028 63.158 6.13 0.00 0.00 3.18
6666 7137 4.103103 GCTTCGCGGCCTTGTTCC 62.103 66.667 6.13 0.00 0.00 3.62
6672 7143 2.747855 CGGCCTTGTTCCAGCCTC 60.748 66.667 0.00 0.00 44.84 4.70
6673 7144 2.361737 GGCCTTGTTCCAGCCTCC 60.362 66.667 0.00 0.00 43.62 4.30
6780 7266 0.455633 CGCAGCTGCCATGTTCTTTC 60.456 55.000 32.07 1.12 37.91 2.62
6796 7282 1.004862 CTTTCCTTTCTGGGGAGGGAC 59.995 57.143 0.00 0.00 36.20 4.46
6798 7284 2.670148 CCTTTCTGGGGAGGGACGG 61.670 68.421 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.148807 TGATGTGTGTTTTCTTTCTTCGATAA 57.851 30.769 0.00 0.00 0.00 1.75
1 2 7.722795 TGATGTGTGTTTTCTTTCTTCGATA 57.277 32.000 0.00 0.00 0.00 2.92
2 3 6.618287 TGATGTGTGTTTTCTTTCTTCGAT 57.382 33.333 0.00 0.00 0.00 3.59
3 4 6.483307 AGATGATGTGTGTTTTCTTTCTTCGA 59.517 34.615 0.00 0.00 0.00 3.71
4 5 6.662616 AGATGATGTGTGTTTTCTTTCTTCG 58.337 36.000 0.00 0.00 0.00 3.79
5 6 7.592903 GGAAGATGATGTGTGTTTTCTTTCTTC 59.407 37.037 0.00 0.00 0.00 2.87
6 7 7.428826 GGAAGATGATGTGTGTTTTCTTTCTT 58.571 34.615 0.00 0.00 0.00 2.52
7 8 6.293626 CGGAAGATGATGTGTGTTTTCTTTCT 60.294 38.462 0.00 0.00 0.00 2.52
8 9 5.853282 CGGAAGATGATGTGTGTTTTCTTTC 59.147 40.000 0.00 0.00 0.00 2.62
9 10 5.762045 CGGAAGATGATGTGTGTTTTCTTT 58.238 37.500 0.00 0.00 0.00 2.52
10 11 4.320494 GCGGAAGATGATGTGTGTTTTCTT 60.320 41.667 0.00 0.00 0.00 2.52
11 12 3.189287 GCGGAAGATGATGTGTGTTTTCT 59.811 43.478 0.00 0.00 0.00 2.52
12 13 3.058293 TGCGGAAGATGATGTGTGTTTTC 60.058 43.478 0.00 0.00 0.00 2.29
13 14 2.884012 TGCGGAAGATGATGTGTGTTTT 59.116 40.909 0.00 0.00 0.00 2.43
14 15 2.226437 GTGCGGAAGATGATGTGTGTTT 59.774 45.455 0.00 0.00 0.00 2.83
15 16 1.806542 GTGCGGAAGATGATGTGTGTT 59.193 47.619 0.00 0.00 0.00 3.32
16 17 1.270785 TGTGCGGAAGATGATGTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
17 18 1.129251 GTGTGCGGAAGATGATGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
18 19 1.442769 GTGTGCGGAAGATGATGTGT 58.557 50.000 0.00 0.00 0.00 3.72
19 20 0.371301 CGTGTGCGGAAGATGATGTG 59.629 55.000 0.00 0.00 0.00 3.21
20 21 1.361668 GCGTGTGCGGAAGATGATGT 61.362 55.000 0.00 0.00 38.78 3.06
21 22 1.349627 GCGTGTGCGGAAGATGATG 59.650 57.895 0.00 0.00 38.78 3.07
22 23 1.815421 GGCGTGTGCGGAAGATGAT 60.815 57.895 0.00 0.00 44.10 2.45
23 24 2.434185 GGCGTGTGCGGAAGATGA 60.434 61.111 0.00 0.00 44.10 2.92
24 25 1.851021 TTTGGCGTGTGCGGAAGATG 61.851 55.000 0.00 0.00 44.10 2.90
25 26 1.599518 TTTGGCGTGTGCGGAAGAT 60.600 52.632 0.00 0.00 44.10 2.40
26 27 2.203084 TTTGGCGTGTGCGGAAGA 60.203 55.556 0.00 0.00 44.10 2.87
27 28 2.051345 GTTTGGCGTGTGCGGAAG 60.051 61.111 0.00 0.00 44.10 3.46
28 29 3.587933 GGTTTGGCGTGTGCGGAA 61.588 61.111 0.00 0.00 44.10 4.30
29 30 4.858680 TGGTTTGGCGTGTGCGGA 62.859 61.111 0.00 0.00 44.10 5.54
30 31 2.691674 ATTTGGTTTGGCGTGTGCGG 62.692 55.000 0.00 0.00 44.10 5.69
31 32 0.039978 TATTTGGTTTGGCGTGTGCG 60.040 50.000 0.00 0.00 44.10 5.34
32 33 1.790043 GTTATTTGGTTTGGCGTGTGC 59.210 47.619 0.00 0.00 41.71 4.57
33 34 3.085443 TGTTATTTGGTTTGGCGTGTG 57.915 42.857 0.00 0.00 0.00 3.82
34 35 3.802948 TTGTTATTTGGTTTGGCGTGT 57.197 38.095 0.00 0.00 0.00 4.49
35 36 5.470845 TTTTTGTTATTTGGTTTGGCGTG 57.529 34.783 0.00 0.00 0.00 5.34
60 61 3.089284 AGTCGGAATTGTTGGGATTTCC 58.911 45.455 0.00 0.00 0.00 3.13
61 62 7.497909 TCTTATAGTCGGAATTGTTGGGATTTC 59.502 37.037 0.00 0.00 0.00 2.17
62 63 7.343357 TCTTATAGTCGGAATTGTTGGGATTT 58.657 34.615 0.00 0.00 0.00 2.17
63 64 6.895782 TCTTATAGTCGGAATTGTTGGGATT 58.104 36.000 0.00 0.00 0.00 3.01
64 65 6.494666 TCTTATAGTCGGAATTGTTGGGAT 57.505 37.500 0.00 0.00 0.00 3.85
65 66 5.943349 TCTTATAGTCGGAATTGTTGGGA 57.057 39.130 0.00 0.00 0.00 4.37
66 67 7.442656 AGTATCTTATAGTCGGAATTGTTGGG 58.557 38.462 0.00 0.00 0.00 4.12
67 68 7.599245 GGAGTATCTTATAGTCGGAATTGTTGG 59.401 40.741 0.00 0.00 33.73 3.77
68 69 8.141909 TGGAGTATCTTATAGTCGGAATTGTTG 58.858 37.037 0.00 0.00 33.73 3.33
69 70 8.246430 TGGAGTATCTTATAGTCGGAATTGTT 57.754 34.615 0.00 0.00 33.73 2.83
70 71 7.834881 TGGAGTATCTTATAGTCGGAATTGT 57.165 36.000 0.00 0.00 33.73 2.71
76 77 7.713750 TCTGTTTTGGAGTATCTTATAGTCGG 58.286 38.462 0.00 0.00 33.73 4.79
80 81 9.265901 CCACATCTGTTTTGGAGTATCTTATAG 57.734 37.037 0.00 0.00 33.73 1.31
86 87 4.330074 CGACCACATCTGTTTTGGAGTATC 59.670 45.833 0.00 0.00 34.24 2.24
92 93 0.240945 GCCGACCACATCTGTTTTGG 59.759 55.000 0.00 0.00 36.39 3.28
108 109 3.254657 TCCCTAACAATTTGAAGTTGCCG 59.745 43.478 2.79 0.00 0.00 5.69
109 110 4.864704 TCCCTAACAATTTGAAGTTGCC 57.135 40.909 2.79 0.00 0.00 4.52
114 115 9.546428 ACAGAAAAATTCCCTAACAATTTGAAG 57.454 29.630 2.79 0.41 34.39 3.02
115 116 9.898152 AACAGAAAAATTCCCTAACAATTTGAA 57.102 25.926 2.79 0.00 34.39 2.69
123 124 6.928492 TGCAATGAACAGAAAAATTCCCTAAC 59.072 34.615 0.00 0.00 0.00 2.34
125 126 6.662865 TGCAATGAACAGAAAAATTCCCTA 57.337 33.333 0.00 0.00 0.00 3.53
128 129 7.481275 TCTTTGCAATGAACAGAAAAATTCC 57.519 32.000 12.27 0.00 0.00 3.01
136 137 5.596836 AAAGGTTCTTTGCAATGAACAGA 57.403 34.783 37.94 21.83 41.93 3.41
139 140 6.908870 AGAAAAAGGTTCTTTGCAATGAAC 57.091 33.333 33.83 33.83 40.41 3.18
176 178 8.559222 TGCAATTGTTTCTTTATATGCATACG 57.441 30.769 8.99 0.00 37.61 3.06
181 183 7.182089 GCCTTTGCAATTGTTTCTTTATATGC 58.818 34.615 7.40 0.00 37.47 3.14
190 194 1.072173 AGGGGCCTTTGCAATTGTTTC 59.928 47.619 0.84 0.00 40.13 2.78
191 195 1.139439 AGGGGCCTTTGCAATTGTTT 58.861 45.000 0.84 0.00 40.13 2.83
200 204 1.341383 ACTATCTTGCAGGGGCCTTTG 60.341 52.381 0.84 3.62 40.13 2.77
202 206 1.893315 TACTATCTTGCAGGGGCCTT 58.107 50.000 0.84 0.00 40.13 4.35
227 231 5.733620 TCTCGTTGGAAGTTAGTGGTAAT 57.266 39.130 0.00 0.00 0.00 1.89
229 233 4.525487 ACATCTCGTTGGAAGTTAGTGGTA 59.475 41.667 0.00 0.00 0.00 3.25
252 256 4.746535 TGTGAGTGGTTCTTGTAGACAA 57.253 40.909 0.00 0.00 0.00 3.18
298 302 0.647410 GTGGCGACAATGATGACTCG 59.353 55.000 0.00 0.00 46.06 4.18
308 312 0.179234 TGGAGTTCTTGTGGCGACAA 59.821 50.000 13.92 13.92 46.06 3.18
311 315 1.070786 GGTGGAGTTCTTGTGGCGA 59.929 57.895 0.00 0.00 0.00 5.54
312 316 0.817634 TTGGTGGAGTTCTTGTGGCG 60.818 55.000 0.00 0.00 0.00 5.69
318 322 5.053978 AGAATTCACTTGGTGGAGTTCTT 57.946 39.130 8.44 0.00 33.87 2.52
341 345 7.921786 TTGAAGTCTTTCAAGAAACTGAAGA 57.078 32.000 0.00 0.00 45.77 2.87
358 362 1.002011 GGGCAGGAGGGTTGAAGTC 60.002 63.158 0.00 0.00 0.00 3.01
364 369 3.966543 CCAACGGGCAGGAGGGTT 61.967 66.667 0.00 0.00 0.00 4.11
376 381 2.813908 GCACTCGCTACCCCAACG 60.814 66.667 0.00 0.00 34.30 4.10
380 385 2.955881 AAGGTGCACTCGCTACCCC 61.956 63.158 17.98 0.00 39.03 4.95
384 389 1.292223 GACCAAGGTGCACTCGCTA 59.708 57.895 17.98 0.00 39.64 4.26
386 391 3.414700 CGACCAAGGTGCACTCGC 61.415 66.667 17.98 0.00 39.24 5.03
387 392 2.029073 ACGACCAAGGTGCACTCG 59.971 61.111 20.02 20.02 0.00 4.18
391 396 0.602638 GATGTCACGACCAAGGTGCA 60.603 55.000 0.00 0.00 35.39 4.57
400 405 3.381908 ACCTAGGATCTTGATGTCACGAC 59.618 47.826 17.98 0.00 0.00 4.34
401 406 3.632333 ACCTAGGATCTTGATGTCACGA 58.368 45.455 17.98 0.00 0.00 4.35
403 408 3.797184 GCGACCTAGGATCTTGATGTCAC 60.797 52.174 17.98 0.00 0.00 3.67
414 419 2.119886 GCTCACTGCGACCTAGGAT 58.880 57.895 17.98 0.00 0.00 3.24
424 429 0.871057 GTGGTTGAGAAGCTCACTGC 59.129 55.000 0.00 0.00 40.46 4.40
425 430 1.143305 CGTGGTTGAGAAGCTCACTG 58.857 55.000 0.00 0.00 40.46 3.66
428 434 1.270305 CCTTCGTGGTTGAGAAGCTCA 60.270 52.381 0.00 0.00 41.69 4.26
438 444 0.106918 TGGTGCTTTCCTTCGTGGTT 60.107 50.000 0.00 0.00 37.07 3.67
440 446 0.804989 GATGGTGCTTTCCTTCGTGG 59.195 55.000 0.00 0.00 37.10 4.94
441 447 1.466167 CAGATGGTGCTTTCCTTCGTG 59.534 52.381 0.00 0.00 36.94 4.35
457 463 3.315142 TTTCTCGGCGGCAGCAGAT 62.315 57.895 12.37 0.00 45.87 2.90
477 483 7.172019 CCTTTTGCACAATAGAGATTGCTTTTT 59.828 33.333 2.84 0.00 45.52 1.94
501 507 9.185680 GTTTAATTATGTGGGATGTTAGTTCCT 57.814 33.333 0.00 0.00 33.53 3.36
502 508 8.410912 GGTTTAATTATGTGGGATGTTAGTTCC 58.589 37.037 0.00 0.00 0.00 3.62
512 518 6.782988 TGAACCTTTGGTTTAATTATGTGGGA 59.217 34.615 3.34 0.00 46.95 4.37
514 520 7.386573 GGTTGAACCTTTGGTTTAATTATGTGG 59.613 37.037 7.20 0.00 46.95 4.17
521 527 3.243941 GCCGGTTGAACCTTTGGTTTAAT 60.244 43.478 13.18 0.00 46.95 1.40
544 550 4.444449 GGGAGTGAGTAGTTGTGGTTCTTT 60.444 45.833 0.00 0.00 0.00 2.52
549 555 1.349067 GGGGAGTGAGTAGTTGTGGT 58.651 55.000 0.00 0.00 0.00 4.16
554 560 2.696526 TCAGTGGGGAGTGAGTAGTT 57.303 50.000 0.00 0.00 0.00 2.24
555 561 2.461695 CATCAGTGGGGAGTGAGTAGT 58.538 52.381 0.00 0.00 0.00 2.73
569 575 2.159114 GGTGTGTTGTTTTGCCATCAGT 60.159 45.455 0.00 0.00 0.00 3.41
571 577 1.202348 CGGTGTGTTGTTTTGCCATCA 60.202 47.619 0.00 0.00 0.00 3.07
578 584 2.814919 TGTTCTGACGGTGTGTTGTTTT 59.185 40.909 0.00 0.00 0.00 2.43
604 610 7.246311 TCACTAAATAAGTACTTCCGACTTCG 58.754 38.462 12.39 0.00 38.16 3.79
605 611 8.976986 TTCACTAAATAAGTACTTCCGACTTC 57.023 34.615 12.39 0.00 38.16 3.01
646 652 0.249155 TTCCGACGGTGTGTTGAGAC 60.249 55.000 14.79 0.00 33.36 3.36
663 669 1.390463 GCTCCGACTTCGTTCATGTTC 59.610 52.381 0.00 0.00 37.74 3.18
668 674 2.089201 TGATAGCTCCGACTTCGTTCA 58.911 47.619 0.00 0.00 37.74 3.18
682 688 5.390991 GGTGTTTAACTGTGCTTCTGATAGC 60.391 44.000 0.00 5.31 41.59 2.97
687 693 4.836125 ATGGTGTTTAACTGTGCTTCTG 57.164 40.909 0.00 0.00 0.00 3.02
718 725 8.353684 TGCGTCTCCAAGAAAAATGTTTTAATA 58.646 29.630 0.00 0.00 0.00 0.98
720 727 6.565234 TGCGTCTCCAAGAAAAATGTTTTAA 58.435 32.000 0.00 0.00 0.00 1.52
721 728 6.137794 TGCGTCTCCAAGAAAAATGTTTTA 57.862 33.333 0.00 0.00 0.00 1.52
723 730 4.647424 TGCGTCTCCAAGAAAAATGTTT 57.353 36.364 0.00 0.00 0.00 2.83
725 732 4.338118 TCTTTGCGTCTCCAAGAAAAATGT 59.662 37.500 0.00 0.00 0.00 2.71
726 733 4.858935 TCTTTGCGTCTCCAAGAAAAATG 58.141 39.130 0.00 0.00 0.00 2.32
727 734 5.163561 TGTTCTTTGCGTCTCCAAGAAAAAT 60.164 36.000 0.00 0.00 0.00 1.82
755 763 7.093945 CCCAGCTTGCTTTTTCCTAATAGTAAA 60.094 37.037 0.00 0.00 0.00 2.01
840 859 0.396060 GGATCTAGGCCCTGAGCAAG 59.604 60.000 12.01 0.00 46.50 4.01
853 872 2.758979 GGAGGAAACGTCAGTGGATCTA 59.241 50.000 0.00 0.00 0.00 1.98
882 901 9.673454 GATTTTGTTGGTTACGAGATTACTTTT 57.327 29.630 0.00 0.00 0.00 2.27
883 902 8.294577 GGATTTTGTTGGTTACGAGATTACTTT 58.705 33.333 0.00 0.00 0.00 2.66
884 903 7.664318 AGGATTTTGTTGGTTACGAGATTACTT 59.336 33.333 0.00 0.00 0.00 2.24
1036 1055 3.685139 ATTTACCGCGGAGATCATGAT 57.315 42.857 35.90 8.25 0.00 2.45
1323 1350 2.680370 GGCAGGTAGGGGACTTGGG 61.680 68.421 0.00 0.00 43.67 4.12
1405 1432 2.679639 GCAACACCCGATGGACATAAGA 60.680 50.000 0.00 0.00 34.81 2.10
1406 1433 1.670811 GCAACACCCGATGGACATAAG 59.329 52.381 0.00 0.00 34.81 1.73
1423 1451 5.622007 CGAAATTTGCTCTAGGAATTGGCAA 60.622 40.000 0.68 0.68 40.43 4.52
1442 1470 1.140252 ACACCTAATAGCCGGCGAAAT 59.860 47.619 23.20 13.61 0.00 2.17
1450 1478 2.483889 GCCTGACTGACACCTAATAGCC 60.484 54.545 0.00 0.00 0.00 3.93
1496 1524 6.537660 CGGATCTAATTTAAGAAACCGGAGTT 59.462 38.462 9.46 0.40 41.47 3.01
1501 1529 6.897259 TGTCGGATCTAATTTAAGAAACCG 57.103 37.500 15.18 15.18 43.92 4.44
1542 1570 6.094048 CACCACTGAGTTCATTAATTACTGGG 59.906 42.308 5.02 4.59 0.00 4.45
1579 1607 4.021916 TCTAGTACCTACTCAAAGGCCAC 58.978 47.826 5.01 0.00 40.62 5.01
1633 1661 4.683320 ACTTTTCTTTCGTCGTACTTAGCC 59.317 41.667 0.00 0.00 0.00 3.93
1655 1691 5.297547 TCAGAACTGTTCAATGTCCTGTAC 58.702 41.667 21.50 0.00 0.00 2.90
1687 1723 3.303001 GCTGCTCTCTATTGCGATTTCAC 60.303 47.826 0.00 0.00 0.00 3.18
1692 1728 3.368220 CCATAGCTGCTCTCTATTGCGAT 60.368 47.826 4.91 0.00 0.00 4.58
1729 1765 1.594293 CAACAGGCACCGTCTTCGT 60.594 57.895 0.00 0.00 35.01 3.85
1741 1777 1.742761 ATTCTGTGCGATCCAACAGG 58.257 50.000 17.86 4.83 0.00 4.00
1743 1779 2.905075 CCTATTCTGTGCGATCCAACA 58.095 47.619 0.00 0.00 0.00 3.33
1744 1780 1.599542 GCCTATTCTGTGCGATCCAAC 59.400 52.381 0.00 0.00 0.00 3.77
1747 1783 1.202580 ACAGCCTATTCTGTGCGATCC 60.203 52.381 0.00 0.00 44.88 3.36
1757 1793 4.876679 GGTCCTTAGAAACACAGCCTATTC 59.123 45.833 0.00 0.00 0.00 1.75
1788 1824 4.452733 GAAGTCGCACGGGGAGGG 62.453 72.222 0.00 0.00 0.00 4.30
1789 1825 3.649277 CTGAAGTCGCACGGGGAGG 62.649 68.421 0.00 0.00 0.00 4.30
1790 1826 2.125912 CTGAAGTCGCACGGGGAG 60.126 66.667 0.00 0.00 0.00 4.30
1791 1827 4.373116 GCTGAAGTCGCACGGGGA 62.373 66.667 0.00 0.00 0.00 4.81
1794 1830 4.717629 TCCGCTGAAGTCGCACGG 62.718 66.667 0.00 0.00 45.15 4.94
1795 1831 3.175240 CTCCGCTGAAGTCGCACG 61.175 66.667 0.00 0.00 0.00 5.34
1796 1832 2.811317 CCTCCGCTGAAGTCGCAC 60.811 66.667 0.00 0.00 0.00 5.34
1797 1833 2.765250 GAACCTCCGCTGAAGTCGCA 62.765 60.000 0.00 0.00 0.00 5.10
1798 1834 2.048127 AACCTCCGCTGAAGTCGC 60.048 61.111 0.00 0.00 0.00 5.19
1802 1838 4.657436 ACTATTAGAACCTCCGCTGAAG 57.343 45.455 0.00 0.00 0.00 3.02
1808 1844 8.712285 TGATTAACAAACTATTAGAACCTCCG 57.288 34.615 0.00 0.00 0.00 4.63
1826 1862 6.910536 ATCGACTCAACCAAGATGATTAAC 57.089 37.500 0.00 0.00 0.00 2.01
1838 1874 6.097915 TCCTTCCATATAATCGACTCAACC 57.902 41.667 0.00 0.00 0.00 3.77
1916 1952 1.227527 CACACTTGGCACTCGACCA 60.228 57.895 0.00 0.00 34.65 4.02
1977 2023 5.285134 CGACCACAAAAACAACTACAAACAG 59.715 40.000 0.00 0.00 0.00 3.16
1994 2040 0.828022 AGACAGTCAAACCGACCACA 59.172 50.000 2.66 0.00 46.69 4.17
2115 2279 9.673454 GAAGTATTTCCTTTTTAAGCGAAAGAA 57.327 29.630 0.59 0.00 36.45 2.52
2116 2280 8.842280 TGAAGTATTTCCTTTTTAAGCGAAAGA 58.158 29.630 0.59 0.00 36.45 2.52
2117 2281 9.118236 CTGAAGTATTTCCTTTTTAAGCGAAAG 57.882 33.333 0.00 0.00 33.95 2.62
2204 2369 9.999009 TGTTAAGTATACAGACAGATTTAGTCG 57.001 33.333 5.50 0.00 40.84 4.18
2253 2419 8.412456 TCTTGCTGTGTTTCTTGAATGAATTAA 58.588 29.630 0.00 0.00 0.00 1.40
2267 2433 4.275936 GGTCACTACAATCTTGCTGTGTTT 59.724 41.667 12.42 0.00 36.63 2.83
2284 2450 0.249398 GTCTAATGGTGCGGGTCACT 59.751 55.000 0.00 0.00 44.98 3.41
2285 2451 0.249398 AGTCTAATGGTGCGGGTCAC 59.751 55.000 0.00 0.00 44.90 3.67
2286 2452 0.981183 AAGTCTAATGGTGCGGGTCA 59.019 50.000 0.00 0.00 0.00 4.02
2287 2453 1.207329 AGAAGTCTAATGGTGCGGGTC 59.793 52.381 0.00 0.00 0.00 4.46
2288 2454 1.066143 CAGAAGTCTAATGGTGCGGGT 60.066 52.381 0.00 0.00 0.00 5.28
2289 2455 1.066143 ACAGAAGTCTAATGGTGCGGG 60.066 52.381 0.00 0.00 0.00 6.13
2290 2456 2.271800 GACAGAAGTCTAATGGTGCGG 58.728 52.381 0.00 0.00 41.64 5.69
2316 2482 9.374838 CTCACCCGTATTTAAAGTATGTTAAGT 57.625 33.333 0.00 0.00 0.00 2.24
2317 2483 9.374838 ACTCACCCGTATTTAAAGTATGTTAAG 57.625 33.333 0.00 0.00 0.00 1.85
2318 2484 9.723601 AACTCACCCGTATTTAAAGTATGTTAA 57.276 29.630 0.00 0.00 0.00 2.01
2319 2485 9.369904 GAACTCACCCGTATTTAAAGTATGTTA 57.630 33.333 0.00 0.00 0.00 2.41
2320 2486 8.098912 AGAACTCACCCGTATTTAAAGTATGTT 58.901 33.333 0.00 0.00 0.00 2.71
2321 2487 7.618137 AGAACTCACCCGTATTTAAAGTATGT 58.382 34.615 0.00 0.00 0.00 2.29
2322 2488 8.488651 AAGAACTCACCCGTATTTAAAGTATG 57.511 34.615 0.00 0.00 0.00 2.39
2325 2491 9.511272 AATTAAGAACTCACCCGTATTTAAAGT 57.489 29.630 0.00 0.00 0.00 2.66
2326 2492 9.983804 GAATTAAGAACTCACCCGTATTTAAAG 57.016 33.333 0.00 0.00 0.00 1.85
2327 2493 9.504708 TGAATTAAGAACTCACCCGTATTTAAA 57.495 29.630 0.00 0.00 0.00 1.52
2328 2494 9.675464 ATGAATTAAGAACTCACCCGTATTTAA 57.325 29.630 0.00 0.00 0.00 1.52
2329 2495 9.675464 AATGAATTAAGAACTCACCCGTATTTA 57.325 29.630 0.00 0.00 0.00 1.40
2330 2496 8.575649 AATGAATTAAGAACTCACCCGTATTT 57.424 30.769 0.00 0.00 0.00 1.40
2331 2497 7.827236 TGAATGAATTAAGAACTCACCCGTATT 59.173 33.333 0.00 0.00 0.00 1.89
2332 2498 7.335627 TGAATGAATTAAGAACTCACCCGTAT 58.664 34.615 0.00 0.00 0.00 3.06
2333 2499 6.703319 TGAATGAATTAAGAACTCACCCGTA 58.297 36.000 0.00 0.00 0.00 4.02
2334 2500 5.556915 TGAATGAATTAAGAACTCACCCGT 58.443 37.500 0.00 0.00 0.00 5.28
2335 2501 6.371548 TCTTGAATGAATTAAGAACTCACCCG 59.628 38.462 0.00 0.00 0.00 5.28
2336 2502 7.687941 TCTTGAATGAATTAAGAACTCACCC 57.312 36.000 0.00 0.00 0.00 4.61
2337 2503 9.399403 GTTTCTTGAATGAATTAAGAACTCACC 57.601 33.333 0.00 0.00 39.40 4.02
2342 2508 9.122613 GCTGAGTTTCTTGAATGAATTAAGAAC 57.877 33.333 0.00 0.00 39.40 3.01
2343 2509 8.849168 TGCTGAGTTTCTTGAATGAATTAAGAA 58.151 29.630 0.00 0.00 38.32 2.52
2344 2510 8.394971 TGCTGAGTTTCTTGAATGAATTAAGA 57.605 30.769 0.00 0.00 0.00 2.10
2345 2511 9.125906 CTTGCTGAGTTTCTTGAATGAATTAAG 57.874 33.333 0.00 0.00 0.00 1.85
2346 2512 8.849168 TCTTGCTGAGTTTCTTGAATGAATTAA 58.151 29.630 0.00 0.00 0.00 1.40
2347 2513 8.394971 TCTTGCTGAGTTTCTTGAATGAATTA 57.605 30.769 0.00 0.00 0.00 1.40
2348 2514 7.281040 TCTTGCTGAGTTTCTTGAATGAATT 57.719 32.000 0.00 0.00 0.00 2.17
2349 2515 6.889301 TCTTGCTGAGTTTCTTGAATGAAT 57.111 33.333 0.00 0.00 0.00 2.57
2350 2516 6.889301 ATCTTGCTGAGTTTCTTGAATGAA 57.111 33.333 0.00 0.00 0.00 2.57
2351 2517 6.675026 CAATCTTGCTGAGTTTCTTGAATGA 58.325 36.000 0.00 0.00 0.00 2.57
2352 2518 6.929587 CAATCTTGCTGAGTTTCTTGAATG 57.070 37.500 0.00 0.00 0.00 2.67
2376 2542 0.249120 TCTAATGGTGCGGGTCACTG 59.751 55.000 0.00 0.00 44.98 3.66
2411 2577 5.389830 CGATCATCTTTGTCAACACACGAAT 60.390 40.000 0.00 0.00 29.76 3.34
2417 2583 2.474526 CCGCGATCATCTTTGTCAACAC 60.475 50.000 8.23 0.00 0.00 3.32
2420 2586 2.378445 TCCGCGATCATCTTTGTCAA 57.622 45.000 8.23 0.00 0.00 3.18
2422 2588 2.866156 TCATTCCGCGATCATCTTTGTC 59.134 45.455 8.23 0.00 0.00 3.18
2449 2615 7.392494 TCAATTGGCGGTTTACACAATATTA 57.608 32.000 5.42 0.00 33.54 0.98
2517 2683 5.299531 GGAGGTCAATTCAATAGGCTAAACC 59.700 44.000 0.00 0.00 39.61 3.27
2572 2738 0.596577 AGCATGCAAGCACAAGACAG 59.403 50.000 21.98 0.00 36.85 3.51
2641 2812 1.674441 CACAGTCAGCATATGGCCAAG 59.326 52.381 10.96 3.79 46.50 3.61
2750 2921 5.123820 GTGCAGCCACTCAAAATCACTATAA 59.876 40.000 0.00 0.00 38.93 0.98
2867 3048 6.747414 ATGTTACTCTGCAGGGAATATACA 57.253 37.500 23.49 15.67 0.00 2.29
2868 3049 9.726438 ATTTATGTTACTCTGCAGGGAATATAC 57.274 33.333 23.49 10.56 0.00 1.47
2899 3080 4.394920 ACAATATTGGCACTAAAGTGGTCG 59.605 41.667 19.37 0.00 45.72 4.79
3014 3195 5.762179 AGTCTGTTGATGAATAGGTCCAA 57.238 39.130 0.00 0.00 0.00 3.53
3243 3426 6.543831 GTGAACAATATGATAAGCCTCCAGTT 59.456 38.462 0.00 0.00 0.00 3.16
3248 3431 6.876257 CCTAGGTGAACAATATGATAAGCCTC 59.124 42.308 0.00 0.00 0.00 4.70
3251 3434 7.603024 GGTACCTAGGTGAACAATATGATAAGC 59.397 40.741 25.33 4.86 0.00 3.09
3304 3487 5.221621 TGGATGACGAAATATATGCCAGTCA 60.222 40.000 12.71 12.71 40.67 3.41
3393 3577 7.094377 TGGTGAACTTTTATCAATTAGGCAGTC 60.094 37.037 0.00 0.00 0.00 3.51
3410 3595 3.933861 ACTGGAGTTTCTGGTGAACTT 57.066 42.857 0.00 0.00 31.02 2.66
3469 3660 4.933505 TCCATTTTCTGTTTCATGCACA 57.066 36.364 0.00 0.00 0.00 4.57
3963 4154 7.065085 CCTTTGACTGTACATCCTACAGAAATG 59.935 40.741 13.23 9.17 45.69 2.32
4140 4332 8.396272 TCAAGAAACTTCTTTTAGGATCAAGG 57.604 34.615 1.87 0.00 44.70 3.61
4154 4346 2.554462 GGGGCTGAACTCAAGAAACTTC 59.446 50.000 0.00 0.00 0.00 3.01
4176 4368 9.554724 CACGACATTTTACTGCTATTTTACATT 57.445 29.630 0.00 0.00 0.00 2.71
4199 4391 7.063544 TGGAAGACCAAAATTTTAACAAACACG 59.936 33.333 2.44 0.00 43.91 4.49
4397 4589 2.286365 AATCGCTTTCCCAAAGTCCA 57.714 45.000 0.00 0.00 40.64 4.02
4434 4626 1.651737 TCTCCAACGAATCCCCTTCA 58.348 50.000 0.00 0.00 33.10 3.02
4518 4710 9.705103 AAGTGGTACTATGATAACAGGTTACTA 57.295 33.333 0.00 0.00 0.00 1.82
4655 5054 3.853671 CACGCACATAATCTTTCAAAGGC 59.146 43.478 0.00 0.00 0.00 4.35
4751 5150 6.267471 ACCTCAATTTGCTTTGACATTTCCTA 59.733 34.615 0.00 0.00 32.39 2.94
4808 5207 2.515926 TGGCTCGATCAAGCATAGTC 57.484 50.000 8.15 0.00 44.35 2.59
4954 5353 4.368565 AGGTGAAAAACTCCCTTAGGAC 57.631 45.455 0.00 0.00 37.19 3.85
4991 5393 2.507407 TGGTAGGCCCAGTTTTGATC 57.493 50.000 0.00 0.00 38.72 2.92
5037 5440 6.372659 TGTTGTGCCAAGAGATTAGAGATTTC 59.627 38.462 0.00 0.00 0.00 2.17
5054 5457 1.336755 CCTTACACCTTGTGTTGTGCC 59.663 52.381 5.06 0.00 45.08 5.01
5065 5468 3.577415 GACACTACAAGGACCTTACACCT 59.423 47.826 6.38 0.00 38.23 4.00
5124 5527 8.990163 ACAGAATAAACTTCTCAGGGTAAAAA 57.010 30.769 0.00 0.00 0.00 1.94
5126 5529 8.877195 AGTACAGAATAAACTTCTCAGGGTAAA 58.123 33.333 0.00 0.00 0.00 2.01
5127 5530 8.431910 AGTACAGAATAAACTTCTCAGGGTAA 57.568 34.615 0.00 0.00 0.00 2.85
5128 5531 9.710818 ATAGTACAGAATAAACTTCTCAGGGTA 57.289 33.333 0.00 0.00 0.00 3.69
5146 5549 9.667107 TGAGAAATTTTCCAGGTAATAGTACAG 57.333 33.333 5.52 0.00 31.21 2.74
5165 5568 7.714377 CACTGCAGTAAGAATAGGATGAGAAAT 59.286 37.037 21.20 0.00 0.00 2.17
5224 5627 2.693591 TGAACTCAGTTTCTGACTCGGT 59.306 45.455 0.00 0.00 35.39 4.69
5232 5635 1.689273 ACCTCGCTGAACTCAGTTTCT 59.311 47.619 8.46 0.00 45.45 2.52
5271 5674 5.622770 TTTATGCTCGCTCGACATATAGA 57.377 39.130 11.98 1.23 0.00 1.98
5276 5679 3.001634 CACAATTTATGCTCGCTCGACAT 59.998 43.478 10.43 10.43 0.00 3.06
5277 5680 2.348362 CACAATTTATGCTCGCTCGACA 59.652 45.455 0.00 0.00 0.00 4.35
5318 5721 6.108687 TGCATTTATTCACAACAAAACACCA 58.891 32.000 0.00 0.00 0.00 4.17
5406 5809 1.372087 CCTGGAATCGTGCAAGCTCC 61.372 60.000 11.81 11.81 0.00 4.70
5487 5890 3.499918 ACGCATCAGCAATATCTTTAGCC 59.500 43.478 0.00 0.00 42.27 3.93
5514 5917 1.112113 CTAGCTTTGGGAGGACGCTA 58.888 55.000 0.00 0.00 32.49 4.26
5572 5975 4.218417 GCCAACCACTATCTCAAACACAAT 59.782 41.667 0.00 0.00 0.00 2.71
5596 6000 5.635417 AAAATCAGCCTAGAACTCAAAGC 57.365 39.130 0.00 0.00 0.00 3.51
5627 6031 9.733556 AAGTATACATGAACCACTGTCAAATTA 57.266 29.630 5.50 0.00 0.00 1.40
5657 6061 2.161855 TCAGCATTGTCAACCATCACC 58.838 47.619 0.00 0.00 0.00 4.02
5662 6066 3.023119 ACAACTTCAGCATTGTCAACCA 58.977 40.909 0.00 0.00 33.80 3.67
5695 6099 1.877443 CACCCACACGGTAAGGAAAAG 59.123 52.381 0.02 0.00 46.14 2.27
5701 6105 1.342174 AGTACACACCCACACGGTAAG 59.658 52.381 0.00 0.00 46.14 2.34
5712 6116 7.492352 AAATTTGAGTTACAGAGTACACACC 57.508 36.000 0.00 0.00 0.00 4.16
5878 6288 9.880157 GTTGATACAACTTGTAATCCCTAAGTA 57.120 33.333 5.73 0.00 36.31 2.24
5879 6289 8.380099 TGTTGATACAACTTGTAATCCCTAAGT 58.620 33.333 14.19 0.00 36.31 2.24
5880 6290 8.786826 TGTTGATACAACTTGTAATCCCTAAG 57.213 34.615 14.19 0.00 36.31 2.18
5881 6291 8.598916 TCTGTTGATACAACTTGTAATCCCTAA 58.401 33.333 14.19 0.00 36.31 2.69
5914 6325 3.117776 AGGAACATGATGCAGCAGGATTA 60.118 43.478 24.79 0.00 0.00 1.75
5938 6349 4.717233 TTGTGCAAGTTTGACAGTGATT 57.283 36.364 0.00 0.00 0.00 2.57
5939 6350 4.924305 ATTGTGCAAGTTTGACAGTGAT 57.076 36.364 0.00 0.00 0.00 3.06
5977 6388 2.035066 AGCCTGTTCAGATTGTGCAAAC 59.965 45.455 1.00 0.00 0.00 2.93
5979 6390 1.985473 AGCCTGTTCAGATTGTGCAA 58.015 45.000 1.00 0.00 0.00 4.08
5983 6394 3.213206 TGACAAGCCTGTTCAGATTGT 57.787 42.857 16.90 16.90 35.30 2.71
6106 6517 1.515521 CTGGGTTTGTGTTCCGAGCC 61.516 60.000 0.00 0.00 0.00 4.70
6130 6541 2.126424 GTGTCTCCGGCGACAGAC 60.126 66.667 26.95 23.90 43.94 3.51
6133 6544 3.680786 CTGGTGTCTCCGGCGACA 61.681 66.667 23.01 23.01 41.33 4.35
6261 6675 6.440647 TGGTTGATACTTCAGATACCTTCAGT 59.559 38.462 0.00 0.00 33.28 3.41
6268 6682 8.297426 TGACGATATGGTTGATACTTCAGATAC 58.703 37.037 0.00 0.00 32.27 2.24
6269 6683 8.404107 TGACGATATGGTTGATACTTCAGATA 57.596 34.615 0.00 0.00 32.27 1.98
6382 6814 7.816640 TGCTTGGTAGAACTGATGTTTATTTC 58.183 34.615 0.00 0.00 36.39 2.17
6384 6816 6.942576 ACTGCTTGGTAGAACTGATGTTTATT 59.057 34.615 0.00 0.00 36.39 1.40
6413 6873 1.346068 GTCTCAGCTTGGACCTTCAGT 59.654 52.381 4.89 0.00 0.00 3.41
6421 6881 2.593925 TCTCTCAGTCTCAGCTTGGA 57.406 50.000 0.00 0.00 0.00 3.53
6423 6883 5.450412 GGTCTTATCTCTCAGTCTCAGCTTG 60.450 48.000 0.00 0.00 0.00 4.01
6433 6893 5.479724 TGATATGCCTGGTCTTATCTCTCAG 59.520 44.000 16.90 0.00 0.00 3.35
6434 6894 5.397360 TGATATGCCTGGTCTTATCTCTCA 58.603 41.667 16.90 4.63 0.00 3.27
6441 6901 5.402630 TGGAGTATGATATGCCTGGTCTTA 58.597 41.667 0.00 0.00 0.00 2.10
6443 6903 3.861846 TGGAGTATGATATGCCTGGTCT 58.138 45.455 0.00 0.00 0.00 3.85
6444 6904 4.202357 TGTTGGAGTATGATATGCCTGGTC 60.202 45.833 0.00 0.00 0.00 4.02
6445 6905 3.716353 TGTTGGAGTATGATATGCCTGGT 59.284 43.478 0.00 0.00 0.00 4.00
6446 6906 4.067896 GTGTTGGAGTATGATATGCCTGG 58.932 47.826 0.00 0.00 0.00 4.45
6447 6907 3.742882 CGTGTTGGAGTATGATATGCCTG 59.257 47.826 0.00 0.00 0.00 4.85
6450 6910 2.480419 GCCGTGTTGGAGTATGATATGC 59.520 50.000 0.00 0.00 42.00 3.14
6451 6911 3.990469 GAGCCGTGTTGGAGTATGATATG 59.010 47.826 0.00 0.00 42.00 1.78
6452 6912 3.641436 TGAGCCGTGTTGGAGTATGATAT 59.359 43.478 0.00 0.00 42.00 1.63
6453 6913 3.028130 TGAGCCGTGTTGGAGTATGATA 58.972 45.455 0.00 0.00 42.00 2.15
6476 6942 4.737855 TCAGGTCAGTAGTAAGCATTCC 57.262 45.455 0.00 0.00 0.00 3.01
6515 6986 2.874780 AACATCGACGTCGCTCGC 60.875 61.111 32.19 0.00 44.19 5.03
6625 7096 0.178992 CAGTTTCAGGGCAAGGGTGA 60.179 55.000 0.00 0.00 0.00 4.02
6676 7147 2.033801 CACACTTCCAGTTGCTTCCAAG 59.966 50.000 0.00 0.00 0.00 3.61
6677 7148 2.023673 CACACTTCCAGTTGCTTCCAA 58.976 47.619 0.00 0.00 0.00 3.53
6678 7149 1.679139 CACACTTCCAGTTGCTTCCA 58.321 50.000 0.00 0.00 0.00 3.53
6679 7150 0.312102 GCACACTTCCAGTTGCTTCC 59.688 55.000 0.00 0.00 32.99 3.46
6681 7152 1.678101 GAAGCACACTTCCAGTTGCTT 59.322 47.619 18.20 18.20 45.71 3.91
6683 7154 3.853623 GAAGCACACTTCCAGTTGC 57.146 52.632 0.00 0.00 45.60 4.17
6701 7187 3.068691 TCCTCAGGGACGCTTCCG 61.069 66.667 2.72 0.00 43.94 4.30
6728 7214 1.072173 CTGTTGGTCCACAGGATCACA 59.928 52.381 0.00 0.77 43.19 3.58
6780 7266 2.670148 CCGTCCCTCCCCAGAAAGG 61.670 68.421 0.00 0.00 37.03 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.