Multiple sequence alignment - TraesCS3A01G374700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G374700 chr3A 100.000 3608 0 0 1 3608 624187268 624183661 0.000000e+00 6663.0
1 TraesCS3A01G374700 chr3A 92.127 1702 131 3 971 2669 624058720 624057019 0.000000e+00 2398.0
2 TraesCS3A01G374700 chr3A 94.080 929 42 6 2681 3608 746410476 746409560 0.000000e+00 1399.0
3 TraesCS3A01G374700 chr3A 85.455 935 73 38 2681 3606 702408094 702408974 0.000000e+00 915.0
4 TraesCS3A01G374700 chr3A 87.798 377 40 5 3233 3606 691301570 691301943 1.540000e-118 436.0
5 TraesCS3A01G374700 chr3A 91.304 69 6 0 881 949 624058789 624058721 1.070000e-15 95.3
6 TraesCS3A01G374700 chr3D 92.331 2347 158 11 314 2656 481394160 481391832 0.000000e+00 3317.0
7 TraesCS3A01G374700 chr3D 91.690 1757 135 6 911 2667 481292127 481290382 0.000000e+00 2425.0
8 TraesCS3A01G374700 chr3B 92.786 1705 115 5 918 2622 642311400 642309704 0.000000e+00 2460.0
9 TraesCS3A01G374700 chr3B 91.511 1072 84 1 1598 2669 642391296 642390232 0.000000e+00 1469.0
10 TraesCS3A01G374700 chr3B 92.226 566 35 4 780 1341 642406298 642405738 0.000000e+00 793.0
11 TraesCS3A01G374700 chr3B 89.827 521 40 3 714 1225 642460657 642460141 0.000000e+00 656.0
12 TraesCS3A01G374700 chr3B 92.222 270 21 0 1333 1602 642403699 642403430 2.030000e-102 383.0
13 TraesCS3A01G374700 chr3B 79.467 375 53 12 343 713 642461055 642460701 1.000000e-60 244.0
14 TraesCS3A01G374700 chr1A 95.151 928 43 1 2681 3608 535341994 535341069 0.000000e+00 1463.0
15 TraesCS3A01G374700 chr1A 87.435 382 41 6 3228 3606 8686067 8685690 1.990000e-117 433.0
16 TraesCS3A01G374700 chr7D 91.809 940 48 6 2683 3608 41795067 41795991 0.000000e+00 1282.0
17 TraesCS3A01G374700 chr7D 79.378 965 135 37 2682 3606 518614809 518615749 3.960000e-174 621.0
18 TraesCS3A01G374700 chr7B 86.392 948 101 12 2681 3608 558361921 558362860 0.000000e+00 1011.0
19 TraesCS3A01G374700 chr7B 94.937 316 15 1 1 316 337925256 337924942 9.000000e-136 494.0
20 TraesCS3A01G374700 chr7B 94.921 315 14 2 1 314 388838692 388839005 3.240000e-135 492.0
21 TraesCS3A01G374700 chr7B 94.603 315 15 2 1 314 388852617 388852930 1.510000e-133 486.0
22 TraesCS3A01G374700 chr7B 94.603 315 15 2 1 314 388867221 388867534 1.510000e-133 486.0
23 TraesCS3A01G374700 chr7B 94.286 315 16 2 1 314 388824562 388824875 7.010000e-132 481.0
24 TraesCS3A01G374700 chr6D 86.136 880 75 24 2750 3608 435533650 435532797 0.000000e+00 905.0
25 TraesCS3A01G374700 chr6D 94.498 309 16 1 1 309 384285094 384285401 3.260000e-130 475.0
26 TraesCS3A01G374700 chr6D 77.487 382 53 22 2930 3308 470513979 470513628 7.900000e-47 198.0
27 TraesCS3A01G374700 chr6D 80.930 215 33 7 3097 3308 470516885 470516676 2.880000e-36 163.0
28 TraesCS3A01G374700 chr5D 87.500 784 62 13 2684 3452 407007675 407006913 0.000000e+00 872.0
29 TraesCS3A01G374700 chr5D 93.458 321 19 2 1 321 497788639 497788321 3.260000e-130 475.0
30 TraesCS3A01G374700 chr1D 82.688 878 101 18 2683 3552 391140529 391141363 0.000000e+00 732.0
31 TraesCS3A01G374700 chr4A 91.375 371 25 5 2681 3048 563358059 563357693 5.380000e-138 501.0
32 TraesCS3A01G374700 chr5B 94.620 316 16 1 1 316 429426218 429426532 4.190000e-134 488.0
33 TraesCS3A01G374700 chr5B 84.585 506 49 13 3105 3606 463234556 463234076 3.260000e-130 475.0
34 TraesCS3A01G374700 chr5B 84.858 317 48 0 2681 2997 463234877 463234561 1.620000e-83 320.0
35 TraesCS3A01G374700 chr2B 93.478 322 20 1 1 322 23974739 23975059 9.060000e-131 477.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G374700 chr3A 624183661 624187268 3607 True 6663.00 6663 100.0000 1 3608 1 chr3A.!!$R1 3607
1 TraesCS3A01G374700 chr3A 746409560 746410476 916 True 1399.00 1399 94.0800 2681 3608 1 chr3A.!!$R2 927
2 TraesCS3A01G374700 chr3A 624057019 624058789 1770 True 1246.65 2398 91.7155 881 2669 2 chr3A.!!$R3 1788
3 TraesCS3A01G374700 chr3A 702408094 702408974 880 False 915.00 915 85.4550 2681 3606 1 chr3A.!!$F2 925
4 TraesCS3A01G374700 chr3D 481391832 481394160 2328 True 3317.00 3317 92.3310 314 2656 1 chr3D.!!$R2 2342
5 TraesCS3A01G374700 chr3D 481290382 481292127 1745 True 2425.00 2425 91.6900 911 2667 1 chr3D.!!$R1 1756
6 TraesCS3A01G374700 chr3B 642309704 642311400 1696 True 2460.00 2460 92.7860 918 2622 1 chr3B.!!$R1 1704
7 TraesCS3A01G374700 chr3B 642390232 642391296 1064 True 1469.00 1469 91.5110 1598 2669 1 chr3B.!!$R2 1071
8 TraesCS3A01G374700 chr3B 642403430 642406298 2868 True 588.00 793 92.2240 780 1602 2 chr3B.!!$R3 822
9 TraesCS3A01G374700 chr3B 642460141 642461055 914 True 450.00 656 84.6470 343 1225 2 chr3B.!!$R4 882
10 TraesCS3A01G374700 chr1A 535341069 535341994 925 True 1463.00 1463 95.1510 2681 3608 1 chr1A.!!$R2 927
11 TraesCS3A01G374700 chr7D 41795067 41795991 924 False 1282.00 1282 91.8090 2683 3608 1 chr7D.!!$F1 925
12 TraesCS3A01G374700 chr7D 518614809 518615749 940 False 621.00 621 79.3780 2682 3606 1 chr7D.!!$F2 924
13 TraesCS3A01G374700 chr7B 558361921 558362860 939 False 1011.00 1011 86.3920 2681 3608 1 chr7B.!!$F5 927
14 TraesCS3A01G374700 chr6D 435532797 435533650 853 True 905.00 905 86.1360 2750 3608 1 chr6D.!!$R1 858
15 TraesCS3A01G374700 chr5D 407006913 407007675 762 True 872.00 872 87.5000 2684 3452 1 chr5D.!!$R1 768
16 TraesCS3A01G374700 chr1D 391140529 391141363 834 False 732.00 732 82.6880 2683 3552 1 chr1D.!!$F1 869
17 TraesCS3A01G374700 chr5B 463234076 463234877 801 True 397.50 475 84.7215 2681 3606 2 chr5B.!!$R1 925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.031994 GATGTTGCTTGGTTTGCGGT 59.968 50.0 0.00 0.0 0.00 5.68 F
131 132 0.038166 AGCATGGTGGATGTTTCCGT 59.962 50.0 0.00 0.0 45.89 4.69 F
168 169 0.097150 GGATGCTTCGGCTTTCGTTC 59.903 55.0 0.00 0.0 42.37 3.95 F
172 173 0.097150 GCTTCGGCTTTCGTTCATCC 59.903 55.0 0.00 0.0 40.32 3.51 F
247 248 0.106521 ATTGTGTTGTTTGCCCCAGC 59.893 50.0 0.00 0.0 40.48 4.85 F
271 272 0.246635 AACTTCTGGCTGTATCGCGT 59.753 50.0 5.77 0.0 0.00 6.01 F
864 915 0.320421 AGGCTGTTTCACGTGCGTAT 60.320 50.0 11.67 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1899 4011 0.830444 ACTCCAGCACTTGACCGGTA 60.830 55.000 7.34 0.00 0.00 4.02 R
2140 4252 3.998672 GGTCGACAGGTGCCGGAA 61.999 66.667 18.91 0.00 0.00 4.30 R
2271 4383 2.863346 CGACCGGTCCCAGTTCACA 61.863 63.158 28.52 0.00 0.00 3.58 R
2355 4467 2.590092 CGGGGATCCTTGGACACC 59.410 66.667 12.58 0.93 0.00 4.16 R
2379 4491 2.351111 GAGGTCGAGGTAGTTCACGTAG 59.649 54.545 0.00 0.00 0.00 3.51 R
2448 4560 2.357034 GCACGAGAAACCGCCTGA 60.357 61.111 0.00 0.00 0.00 3.86 R
2784 4904 0.107508 CATGGAGGCACGATGGAACT 60.108 55.000 0.00 0.00 32.38 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.357504 CGTGTACCGGGAGAAATCC 57.642 57.895 6.32 0.00 0.00 3.01
27 28 0.822164 CGTGTACCGGGAGAAATCCT 59.178 55.000 6.32 0.00 0.00 3.24
28 29 2.026641 CGTGTACCGGGAGAAATCCTA 58.973 52.381 6.32 0.00 0.00 2.94
29 30 2.034305 CGTGTACCGGGAGAAATCCTAG 59.966 54.545 6.32 0.00 0.00 3.02
30 31 2.364647 GTGTACCGGGAGAAATCCTAGG 59.635 54.545 6.32 0.82 35.07 3.02
31 32 2.245546 TGTACCGGGAGAAATCCTAGGA 59.754 50.000 15.46 15.46 33.85 2.94
32 33 2.797285 ACCGGGAGAAATCCTAGGAT 57.203 50.000 19.18 19.18 36.23 3.24
33 34 3.061909 ACCGGGAGAAATCCTAGGATT 57.938 47.619 28.25 28.25 45.67 3.01
34 35 2.973406 ACCGGGAGAAATCCTAGGATTC 59.027 50.000 32.43 24.65 43.26 2.52
35 36 2.028930 CCGGGAGAAATCCTAGGATTCG 60.029 54.545 32.43 28.21 43.26 3.34
36 37 2.628657 CGGGAGAAATCCTAGGATTCGT 59.371 50.000 32.43 23.44 43.26 3.85
37 38 3.305471 CGGGAGAAATCCTAGGATTCGTC 60.305 52.174 32.43 28.23 43.26 4.20
38 39 3.007074 GGGAGAAATCCTAGGATTCGTCC 59.993 52.174 33.81 33.81 43.26 4.79
39 40 3.305471 GGAGAAATCCTAGGATTCGTCCG 60.305 52.174 31.12 1.05 43.26 4.79
40 41 2.628657 AGAAATCCTAGGATTCGTCCGG 59.371 50.000 32.43 0.00 43.26 5.14
41 42 1.339097 AATCCTAGGATTCGTCCGGG 58.661 55.000 28.25 0.00 40.44 5.73
42 43 0.187851 ATCCTAGGATTCGTCCGGGT 59.812 55.000 19.18 0.00 34.28 5.28
43 44 0.846015 TCCTAGGATTCGTCCGGGTA 59.154 55.000 7.62 0.00 34.28 3.69
44 45 1.202855 TCCTAGGATTCGTCCGGGTAG 60.203 57.143 7.62 0.00 34.28 3.18
45 46 0.597072 CTAGGATTCGTCCGGGTAGC 59.403 60.000 0.00 0.00 34.28 3.58
46 47 0.106569 TAGGATTCGTCCGGGTAGCA 60.107 55.000 0.00 0.00 34.28 3.49
47 48 1.067582 GGATTCGTCCGGGTAGCAG 59.932 63.158 0.00 0.00 0.00 4.24
48 49 1.591863 GATTCGTCCGGGTAGCAGC 60.592 63.158 0.00 0.00 0.00 5.25
49 50 3.426117 ATTCGTCCGGGTAGCAGCG 62.426 63.158 0.00 0.00 0.00 5.18
51 52 4.849329 CGTCCGGGTAGCAGCGTC 62.849 72.222 0.00 0.00 0.00 5.19
52 53 4.849329 GTCCGGGTAGCAGCGTCG 62.849 72.222 0.00 0.00 0.00 5.12
54 55 4.849329 CCGGGTAGCAGCGTCGTC 62.849 72.222 0.00 0.00 0.00 4.20
56 57 4.112341 GGGTAGCAGCGTCGTCGT 62.112 66.667 3.66 0.00 39.49 4.34
57 58 2.576317 GGTAGCAGCGTCGTCGTC 60.576 66.667 3.66 0.00 39.49 4.20
58 59 2.938002 GTAGCAGCGTCGTCGTCG 60.938 66.667 7.53 7.53 39.49 5.12
59 60 3.417224 TAGCAGCGTCGTCGTCGT 61.417 61.111 13.09 0.00 39.49 4.34
60 61 3.358667 TAGCAGCGTCGTCGTCGTC 62.359 63.158 13.09 6.07 39.49 4.20
65 66 4.714555 CGTCGTCGTCGTCGCAGT 62.715 66.667 8.64 0.00 40.72 4.40
66 67 2.864248 GTCGTCGTCGTCGCAGTC 60.864 66.667 7.01 0.00 38.33 3.51
67 68 4.081030 TCGTCGTCGTCGCAGTCC 62.081 66.667 7.01 0.00 38.33 3.85
68 69 4.086178 CGTCGTCGTCGCAGTCCT 62.086 66.667 0.00 0.00 36.96 3.85
69 70 2.254651 GTCGTCGTCGCAGTCCTT 59.745 61.111 0.00 0.00 36.96 3.36
70 71 1.796749 GTCGTCGTCGCAGTCCTTC 60.797 63.158 0.00 0.00 36.96 3.46
71 72 1.964891 TCGTCGTCGCAGTCCTTCT 60.965 57.895 0.00 0.00 36.96 2.85
72 73 1.081376 CGTCGTCGCAGTCCTTCTT 60.081 57.895 0.00 0.00 0.00 2.52
73 74 1.337817 CGTCGTCGCAGTCCTTCTTG 61.338 60.000 0.00 0.00 0.00 3.02
74 75 0.039437 GTCGTCGCAGTCCTTCTTGA 60.039 55.000 0.00 0.00 0.00 3.02
75 76 0.671796 TCGTCGCAGTCCTTCTTGAA 59.328 50.000 0.00 0.00 0.00 2.69
76 77 1.063806 CGTCGCAGTCCTTCTTGAAG 58.936 55.000 3.55 3.55 0.00 3.02
77 78 1.335964 CGTCGCAGTCCTTCTTGAAGA 60.336 52.381 11.53 0.00 0.00 2.87
78 79 2.672478 CGTCGCAGTCCTTCTTGAAGAT 60.672 50.000 11.53 0.00 0.00 2.40
79 80 2.670414 GTCGCAGTCCTTCTTGAAGATG 59.330 50.000 11.53 0.00 0.00 2.90
80 81 2.300152 TCGCAGTCCTTCTTGAAGATGT 59.700 45.455 11.53 0.00 0.00 3.06
81 82 3.070018 CGCAGTCCTTCTTGAAGATGTT 58.930 45.455 11.53 0.00 0.00 2.71
82 83 3.120408 CGCAGTCCTTCTTGAAGATGTTG 60.120 47.826 11.53 6.04 0.00 3.33
83 84 3.365767 GCAGTCCTTCTTGAAGATGTTGC 60.366 47.826 11.53 10.98 0.00 4.17
84 85 4.070716 CAGTCCTTCTTGAAGATGTTGCT 58.929 43.478 11.53 0.00 0.00 3.91
85 86 4.518211 CAGTCCTTCTTGAAGATGTTGCTT 59.482 41.667 11.53 0.00 0.00 3.91
86 87 4.518211 AGTCCTTCTTGAAGATGTTGCTTG 59.482 41.667 11.53 0.00 0.00 4.01
87 88 3.822735 TCCTTCTTGAAGATGTTGCTTGG 59.177 43.478 11.53 0.00 0.00 3.61
88 89 3.571401 CCTTCTTGAAGATGTTGCTTGGT 59.429 43.478 11.53 0.00 0.00 3.67
89 90 4.038402 CCTTCTTGAAGATGTTGCTTGGTT 59.962 41.667 11.53 0.00 0.00 3.67
90 91 5.452356 CCTTCTTGAAGATGTTGCTTGGTTT 60.452 40.000 11.53 0.00 0.00 3.27
91 92 4.935702 TCTTGAAGATGTTGCTTGGTTTG 58.064 39.130 0.00 0.00 0.00 2.93
92 93 3.096489 TGAAGATGTTGCTTGGTTTGC 57.904 42.857 0.00 0.00 0.00 3.68
93 94 2.053627 GAAGATGTTGCTTGGTTTGCG 58.946 47.619 0.00 0.00 0.00 4.85
94 95 0.314935 AGATGTTGCTTGGTTTGCGG 59.685 50.000 0.00 0.00 0.00 5.69
95 96 0.031994 GATGTTGCTTGGTTTGCGGT 59.968 50.000 0.00 0.00 0.00 5.68
96 97 0.249405 ATGTTGCTTGGTTTGCGGTG 60.249 50.000 0.00 0.00 0.00 4.94
97 98 1.315981 TGTTGCTTGGTTTGCGGTGA 61.316 50.000 0.00 0.00 0.00 4.02
98 99 0.869880 GTTGCTTGGTTTGCGGTGAC 60.870 55.000 0.00 0.00 0.00 3.67
99 100 1.034838 TTGCTTGGTTTGCGGTGACT 61.035 50.000 0.00 0.00 0.00 3.41
100 101 1.282875 GCTTGGTTTGCGGTGACTC 59.717 57.895 0.00 0.00 0.00 3.36
101 102 1.569493 CTTGGTTTGCGGTGACTCG 59.431 57.895 0.00 0.00 0.00 4.18
102 103 0.878523 CTTGGTTTGCGGTGACTCGA 60.879 55.000 0.00 0.00 0.00 4.04
103 104 0.250124 TTGGTTTGCGGTGACTCGAT 60.250 50.000 0.00 0.00 0.00 3.59
104 105 0.948623 TGGTTTGCGGTGACTCGATG 60.949 55.000 0.00 0.00 0.00 3.84
105 106 1.635663 GGTTTGCGGTGACTCGATGG 61.636 60.000 0.00 0.00 0.00 3.51
106 107 2.032634 TTTGCGGTGACTCGATGGC 61.033 57.895 0.00 0.00 0.00 4.40
107 108 2.723586 TTTGCGGTGACTCGATGGCA 62.724 55.000 0.00 0.00 0.00 4.92
108 109 2.202932 GCGGTGACTCGATGGCAT 60.203 61.111 0.00 0.00 35.31 4.40
109 110 1.815421 GCGGTGACTCGATGGCATT 60.815 57.895 0.00 0.00 35.31 3.56
110 111 2.009108 CGGTGACTCGATGGCATTG 58.991 57.895 8.51 8.51 35.31 2.82
111 112 1.431488 CGGTGACTCGATGGCATTGG 61.431 60.000 14.66 8.05 35.31 3.16
112 113 0.107703 GGTGACTCGATGGCATTGGA 60.108 55.000 14.66 8.26 35.31 3.53
113 114 1.293924 GTGACTCGATGGCATTGGAG 58.706 55.000 21.05 21.05 35.31 3.86
114 115 0.462581 TGACTCGATGGCATTGGAGC 60.463 55.000 22.03 16.81 0.00 4.70
115 116 0.462581 GACTCGATGGCATTGGAGCA 60.463 55.000 22.03 2.39 35.83 4.26
116 117 0.182061 ACTCGATGGCATTGGAGCAT 59.818 50.000 22.03 7.68 35.83 3.79
117 118 0.591659 CTCGATGGCATTGGAGCATG 59.408 55.000 14.66 0.00 35.83 4.06
118 119 0.820482 TCGATGGCATTGGAGCATGG 60.820 55.000 14.66 0.00 35.83 3.66
119 120 1.105167 CGATGGCATTGGAGCATGGT 61.105 55.000 6.84 0.00 35.83 3.55
120 121 0.387929 GATGGCATTGGAGCATGGTG 59.612 55.000 0.00 0.00 35.83 4.17
121 122 1.046472 ATGGCATTGGAGCATGGTGG 61.046 55.000 0.00 0.00 35.83 4.61
122 123 1.380246 GGCATTGGAGCATGGTGGA 60.380 57.895 0.00 0.00 35.83 4.02
123 124 0.757935 GGCATTGGAGCATGGTGGAT 60.758 55.000 0.00 0.00 35.83 3.41
124 125 0.387929 GCATTGGAGCATGGTGGATG 59.612 55.000 0.00 4.83 34.84 3.51
125 126 1.771565 CATTGGAGCATGGTGGATGT 58.228 50.000 0.00 0.00 34.14 3.06
126 127 2.104967 CATTGGAGCATGGTGGATGTT 58.895 47.619 0.00 0.00 34.14 2.71
127 128 2.307496 TTGGAGCATGGTGGATGTTT 57.693 45.000 0.00 0.00 34.14 2.83
128 129 1.838112 TGGAGCATGGTGGATGTTTC 58.162 50.000 0.00 0.00 34.14 2.78
129 130 1.106285 GGAGCATGGTGGATGTTTCC 58.894 55.000 0.00 0.00 42.94 3.13
130 131 0.734889 GAGCATGGTGGATGTTTCCG 59.265 55.000 0.00 0.00 45.89 4.30
131 132 0.038166 AGCATGGTGGATGTTTCCGT 59.962 50.000 0.00 0.00 45.89 4.69
132 133 0.887933 GCATGGTGGATGTTTCCGTT 59.112 50.000 0.00 0.00 45.89 4.44
133 134 1.402720 GCATGGTGGATGTTTCCGTTG 60.403 52.381 0.00 0.00 45.89 4.10
134 135 1.202114 CATGGTGGATGTTTCCGTTGG 59.798 52.381 0.00 0.00 45.89 3.77
135 136 0.538516 TGGTGGATGTTTCCGTTGGG 60.539 55.000 0.00 0.00 45.89 4.12
136 137 1.584495 GTGGATGTTTCCGTTGGGC 59.416 57.895 0.00 0.00 45.89 5.36
137 138 1.969064 TGGATGTTTCCGTTGGGCG 60.969 57.895 0.00 0.00 45.89 6.13
138 139 2.178273 GATGTTTCCGTTGGGCGC 59.822 61.111 0.00 0.00 39.71 6.53
139 140 2.596046 ATGTTTCCGTTGGGCGCA 60.596 55.556 10.83 0.00 39.71 6.09
140 141 2.136196 GATGTTTCCGTTGGGCGCAA 62.136 55.000 12.81 12.81 39.71 4.85
141 142 2.354188 GTTTCCGTTGGGCGCAAC 60.354 61.111 30.76 30.76 39.71 4.17
155 156 3.055719 CAACGGTTGCGGGATGCT 61.056 61.111 8.09 0.00 46.63 3.79
156 157 2.282180 AACGGTTGCGGGATGCTT 60.282 55.556 0.00 0.00 46.63 3.91
157 158 2.332654 AACGGTTGCGGGATGCTTC 61.333 57.895 0.00 0.00 46.63 3.86
158 159 3.864686 CGGTTGCGGGATGCTTCG 61.865 66.667 0.00 0.00 46.63 3.79
159 160 3.508840 GGTTGCGGGATGCTTCGG 61.509 66.667 0.00 0.00 46.63 4.30
160 161 4.179579 GTTGCGGGATGCTTCGGC 62.180 66.667 7.16 7.16 46.63 5.54
161 162 4.408821 TTGCGGGATGCTTCGGCT 62.409 61.111 13.07 0.00 46.63 5.52
162 163 3.918253 TTGCGGGATGCTTCGGCTT 62.918 57.895 13.07 0.00 46.63 4.35
163 164 3.134127 GCGGGATGCTTCGGCTTT 61.134 61.111 6.92 0.00 42.37 3.51
164 165 3.102097 CGGGATGCTTCGGCTTTC 58.898 61.111 0.00 0.00 42.37 2.62
165 166 2.813179 CGGGATGCTTCGGCTTTCG 61.813 63.158 0.00 0.00 42.37 3.46
166 167 1.745489 GGGATGCTTCGGCTTTCGT 60.745 57.895 0.00 0.00 42.37 3.85
167 168 1.305930 GGGATGCTTCGGCTTTCGTT 61.306 55.000 0.00 0.00 42.37 3.85
168 169 0.097150 GGATGCTTCGGCTTTCGTTC 59.903 55.000 0.00 0.00 42.37 3.95
169 170 0.796312 GATGCTTCGGCTTTCGTTCA 59.204 50.000 0.00 0.00 42.37 3.18
170 171 1.398390 GATGCTTCGGCTTTCGTTCAT 59.602 47.619 0.00 0.00 42.37 2.57
171 172 0.796312 TGCTTCGGCTTTCGTTCATC 59.204 50.000 0.00 0.00 42.37 2.92
172 173 0.097150 GCTTCGGCTTTCGTTCATCC 59.903 55.000 0.00 0.00 40.32 3.51
173 174 0.370273 CTTCGGCTTTCGTTCATCCG 59.630 55.000 0.00 0.00 41.30 4.18
174 175 1.017177 TTCGGCTTTCGTTCATCCGG 61.017 55.000 0.00 0.00 40.42 5.14
175 176 1.740296 CGGCTTTCGTTCATCCGGT 60.740 57.895 0.00 0.00 36.73 5.28
176 177 1.794222 GGCTTTCGTTCATCCGGTG 59.206 57.895 0.00 0.00 0.00 4.94
177 178 1.134694 GCTTTCGTTCATCCGGTGC 59.865 57.895 0.00 0.00 0.00 5.01
178 179 1.298859 GCTTTCGTTCATCCGGTGCT 61.299 55.000 0.00 0.00 0.00 4.40
179 180 0.443869 CTTTCGTTCATCCGGTGCTG 59.556 55.000 0.00 0.00 0.00 4.41
180 181 1.573829 TTTCGTTCATCCGGTGCTGC 61.574 55.000 0.00 0.00 0.00 5.25
181 182 3.499737 CGTTCATCCGGTGCTGCC 61.500 66.667 0.00 0.00 0.00 4.85
193 194 4.483711 GCTGCCGGCATTTCTTTC 57.516 55.556 32.87 9.34 41.35 2.62
194 195 1.885871 GCTGCCGGCATTTCTTTCT 59.114 52.632 32.87 0.00 41.35 2.52
195 196 0.179153 GCTGCCGGCATTTCTTTCTC 60.179 55.000 32.87 6.80 41.35 2.87
196 197 1.457346 CTGCCGGCATTTCTTTCTCT 58.543 50.000 32.87 0.00 0.00 3.10
197 198 1.815003 CTGCCGGCATTTCTTTCTCTT 59.185 47.619 32.87 0.00 0.00 2.85
198 199 1.541147 TGCCGGCATTTCTTTCTCTTG 59.459 47.619 29.03 0.00 0.00 3.02
199 200 1.733718 GCCGGCATTTCTTTCTCTTGC 60.734 52.381 24.80 0.00 0.00 4.01
200 201 1.815003 CCGGCATTTCTTTCTCTTGCT 59.185 47.619 0.00 0.00 33.86 3.91
201 202 2.229784 CCGGCATTTCTTTCTCTTGCTT 59.770 45.455 0.00 0.00 33.86 3.91
202 203 3.305608 CCGGCATTTCTTTCTCTTGCTTT 60.306 43.478 0.00 0.00 33.86 3.51
203 204 4.301628 CGGCATTTCTTTCTCTTGCTTTT 58.698 39.130 0.00 0.00 33.86 2.27
204 205 4.383948 CGGCATTTCTTTCTCTTGCTTTTC 59.616 41.667 0.00 0.00 33.86 2.29
205 206 5.536260 GGCATTTCTTTCTCTTGCTTTTCT 58.464 37.500 0.00 0.00 33.86 2.52
206 207 5.632764 GGCATTTCTTTCTCTTGCTTTTCTC 59.367 40.000 0.00 0.00 33.86 2.87
207 208 6.445475 GCATTTCTTTCTCTTGCTTTTCTCT 58.555 36.000 0.00 0.00 0.00 3.10
208 209 6.922407 GCATTTCTTTCTCTTGCTTTTCTCTT 59.078 34.615 0.00 0.00 0.00 2.85
209 210 7.096147 GCATTTCTTTCTCTTGCTTTTCTCTTG 60.096 37.037 0.00 0.00 0.00 3.02
210 211 7.396540 TTTCTTTCTCTTGCTTTTCTCTTGT 57.603 32.000 0.00 0.00 0.00 3.16
211 212 7.396540 TTCTTTCTCTTGCTTTTCTCTTGTT 57.603 32.000 0.00 0.00 0.00 2.83
212 213 7.396540 TCTTTCTCTTGCTTTTCTCTTGTTT 57.603 32.000 0.00 0.00 0.00 2.83
213 214 7.830739 TCTTTCTCTTGCTTTTCTCTTGTTTT 58.169 30.769 0.00 0.00 0.00 2.43
214 215 8.306761 TCTTTCTCTTGCTTTTCTCTTGTTTTT 58.693 29.630 0.00 0.00 0.00 1.94
234 235 4.686191 TTTCTTTTGGGCATGATTGTGT 57.314 36.364 0.00 0.00 0.00 3.72
235 236 4.686191 TTCTTTTGGGCATGATTGTGTT 57.314 36.364 0.00 0.00 0.00 3.32
236 237 3.992643 TCTTTTGGGCATGATTGTGTTG 58.007 40.909 0.00 0.00 0.00 3.33
237 238 3.387374 TCTTTTGGGCATGATTGTGTTGT 59.613 39.130 0.00 0.00 0.00 3.32
238 239 3.834489 TTTGGGCATGATTGTGTTGTT 57.166 38.095 0.00 0.00 0.00 2.83
239 240 3.834489 TTGGGCATGATTGTGTTGTTT 57.166 38.095 0.00 0.00 0.00 2.83
240 241 3.109044 TGGGCATGATTGTGTTGTTTG 57.891 42.857 0.00 0.00 0.00 2.93
241 242 1.799994 GGGCATGATTGTGTTGTTTGC 59.200 47.619 0.00 0.00 0.00 3.68
242 243 1.799994 GGCATGATTGTGTTGTTTGCC 59.200 47.619 0.00 0.00 41.09 4.52
243 244 1.799994 GCATGATTGTGTTGTTTGCCC 59.200 47.619 0.00 0.00 0.00 5.36
244 245 2.415776 CATGATTGTGTTGTTTGCCCC 58.584 47.619 0.00 0.00 0.00 5.80
245 246 1.489481 TGATTGTGTTGTTTGCCCCA 58.511 45.000 0.00 0.00 0.00 4.96
246 247 1.411977 TGATTGTGTTGTTTGCCCCAG 59.588 47.619 0.00 0.00 0.00 4.45
247 248 0.106521 ATTGTGTTGTTTGCCCCAGC 59.893 50.000 0.00 0.00 40.48 4.85
256 257 2.756400 TGCCCCAGCATCGAACTT 59.244 55.556 0.00 0.00 46.52 2.66
257 258 1.377202 TGCCCCAGCATCGAACTTC 60.377 57.895 0.00 0.00 46.52 3.01
258 259 1.078143 GCCCCAGCATCGAACTTCT 60.078 57.895 0.00 0.00 39.53 2.85
259 260 1.372087 GCCCCAGCATCGAACTTCTG 61.372 60.000 0.00 0.00 39.53 3.02
260 261 0.745845 CCCCAGCATCGAACTTCTGG 60.746 60.000 14.77 14.77 44.25 3.86
261 262 1.372087 CCCAGCATCGAACTTCTGGC 61.372 60.000 15.75 1.80 43.51 4.85
262 263 0.392193 CCAGCATCGAACTTCTGGCT 60.392 55.000 11.05 0.00 39.53 4.75
263 264 0.725686 CAGCATCGAACTTCTGGCTG 59.274 55.000 10.08 10.08 42.14 4.85
264 265 0.322975 AGCATCGAACTTCTGGCTGT 59.677 50.000 0.00 0.00 0.00 4.40
265 266 1.550524 AGCATCGAACTTCTGGCTGTA 59.449 47.619 0.00 0.00 0.00 2.74
266 267 2.169352 AGCATCGAACTTCTGGCTGTAT 59.831 45.455 0.00 0.00 0.00 2.29
267 268 2.541762 GCATCGAACTTCTGGCTGTATC 59.458 50.000 0.00 0.00 0.00 2.24
268 269 2.561733 TCGAACTTCTGGCTGTATCG 57.438 50.000 0.00 0.00 0.00 2.92
269 270 0.924090 CGAACTTCTGGCTGTATCGC 59.076 55.000 0.00 0.00 0.00 4.58
270 271 0.924090 GAACTTCTGGCTGTATCGCG 59.076 55.000 0.00 0.00 0.00 5.87
271 272 0.246635 AACTTCTGGCTGTATCGCGT 59.753 50.000 5.77 0.00 0.00 6.01
272 273 0.458543 ACTTCTGGCTGTATCGCGTG 60.459 55.000 5.77 0.00 0.00 5.34
273 274 1.148157 CTTCTGGCTGTATCGCGTGG 61.148 60.000 5.77 0.00 0.00 4.94
274 275 1.884075 TTCTGGCTGTATCGCGTGGT 61.884 55.000 5.77 0.00 0.00 4.16
275 276 1.447838 CTGGCTGTATCGCGTGGTT 60.448 57.895 5.77 0.00 0.00 3.67
276 277 1.695893 CTGGCTGTATCGCGTGGTTG 61.696 60.000 5.77 0.00 0.00 3.77
277 278 2.399611 GCTGTATCGCGTGGTTGC 59.600 61.111 5.77 3.06 0.00 4.17
278 279 2.100631 GCTGTATCGCGTGGTTGCT 61.101 57.895 5.77 0.00 0.00 3.91
279 280 0.804544 GCTGTATCGCGTGGTTGCTA 60.805 55.000 5.77 0.00 0.00 3.49
280 281 1.852942 CTGTATCGCGTGGTTGCTAT 58.147 50.000 5.77 0.00 0.00 2.97
281 282 2.860971 GCTGTATCGCGTGGTTGCTATA 60.861 50.000 5.77 0.00 0.00 1.31
282 283 3.575630 CTGTATCGCGTGGTTGCTATAT 58.424 45.455 5.77 0.00 0.00 0.86
283 284 3.985008 TGTATCGCGTGGTTGCTATATT 58.015 40.909 5.77 0.00 0.00 1.28
284 285 5.123805 TGTATCGCGTGGTTGCTATATTA 57.876 39.130 5.77 0.00 0.00 0.98
285 286 5.530712 TGTATCGCGTGGTTGCTATATTAA 58.469 37.500 5.77 0.00 0.00 1.40
286 287 6.160684 TGTATCGCGTGGTTGCTATATTAAT 58.839 36.000 5.77 0.00 0.00 1.40
287 288 7.314393 TGTATCGCGTGGTTGCTATATTAATA 58.686 34.615 5.77 0.00 0.00 0.98
288 289 7.977293 TGTATCGCGTGGTTGCTATATTAATAT 59.023 33.333 12.51 12.51 0.00 1.28
289 290 9.454585 GTATCGCGTGGTTGCTATATTAATATA 57.545 33.333 13.36 13.36 0.00 0.86
290 291 7.980742 TCGCGTGGTTGCTATATTAATATAG 57.019 36.000 27.69 27.69 43.16 1.31
301 302 7.715265 CTATATTAATATAGCGGGGCACAAG 57.285 40.000 23.27 4.83 36.77 3.16
302 303 2.178912 TAATATAGCGGGGCACAAGC 57.821 50.000 0.00 0.00 41.10 4.01
303 304 8.642689 CTATATTAATATAGCGGGGCACAAGCC 61.643 44.444 23.27 0.00 45.54 4.35
324 325 4.202172 GCCTGTTTTGGTAAAAGTAAGGCA 60.202 41.667 19.80 3.23 44.31 4.75
330 331 8.095169 TGTTTTGGTAAAAGTAAGGCAAGAAAA 58.905 29.630 0.00 0.00 0.00 2.29
377 379 1.640428 TGAGCATGCTACGCAGTAAC 58.360 50.000 22.74 5.16 45.13 2.50
448 450 3.897141 TTTTCTTTCTTTTTGCGGGGT 57.103 38.095 0.00 0.00 0.00 4.95
449 451 5.340439 TTTTTCTTTCTTTTTGCGGGGTA 57.660 34.783 0.00 0.00 0.00 3.69
450 452 5.538849 TTTTCTTTCTTTTTGCGGGGTAT 57.461 34.783 0.00 0.00 0.00 2.73
451 453 4.776795 TTCTTTCTTTTTGCGGGGTATC 57.223 40.909 0.00 0.00 0.00 2.24
455 457 2.432444 TCTTTTTGCGGGGTATCACAG 58.568 47.619 0.00 0.00 0.00 3.66
456 458 2.159382 CTTTTTGCGGGGTATCACAGT 58.841 47.619 0.00 0.00 0.00 3.55
457 459 1.529226 TTTTGCGGGGTATCACAGTG 58.471 50.000 0.00 0.00 0.00 3.66
688 694 2.872370 CGTTACTAGCTAAGTTGCCGT 58.128 47.619 0.00 0.00 39.80 5.68
691 697 4.240096 GTTACTAGCTAAGTTGCCGTCAA 58.760 43.478 0.00 0.00 39.80 3.18
758 808 7.417496 AGTAACAAATTTCGAGTAGACAACC 57.583 36.000 0.00 0.00 0.00 3.77
830 880 1.595328 ACGTCTCTCTCATCGATCGTG 59.405 52.381 15.94 12.61 0.00 4.35
836 886 5.050023 GTCTCTCTCATCGATCGTGTCAATA 60.050 44.000 15.94 0.00 0.00 1.90
864 915 0.320421 AGGCTGTTTCACGTGCGTAT 60.320 50.000 11.67 0.00 0.00 3.06
915 966 4.848357 ACTTCCATGGAAACCATCTACAG 58.152 43.478 26.87 13.98 43.15 2.74
969 1020 1.267038 GCCGCATATATTCGCACATCG 60.267 52.381 0.00 0.00 40.15 3.84
1196 1261 2.552155 CCATCTTCAACCTCCGGTTCAA 60.552 50.000 0.00 0.00 43.05 2.69
1197 1262 3.347216 CATCTTCAACCTCCGGTTCAAT 58.653 45.455 0.00 0.00 43.05 2.57
1251 1316 2.423898 GCCGGAGTCGAGGGATGAA 61.424 63.158 5.05 0.00 39.00 2.57
1344 3456 1.918800 GGGGCTGTCCTACACCACT 60.919 63.158 0.00 0.00 35.33 4.00
1369 3481 4.210093 ACGTGCCGTTCGTGGTGA 62.210 61.111 0.00 0.00 36.35 4.02
1395 3507 4.072088 GCGAACCTGAACCGCGTG 62.072 66.667 4.92 0.00 39.54 5.34
1497 3609 4.410400 CAGTCCCTGGCGTTCCCC 62.410 72.222 0.00 0.00 0.00 4.81
1666 3778 2.050714 GCGACGACGTGTTCTGGA 60.051 61.111 4.58 0.00 41.98 3.86
1899 4011 1.339151 GGCAACGTCTCCATCTCCTTT 60.339 52.381 0.00 0.00 0.00 3.11
1942 4054 4.367023 AGCGCGCCTTGTCGGTTA 62.367 61.111 30.33 0.00 32.06 2.85
1978 4090 1.376037 GAGCTGGGTTTGACCGAGG 60.376 63.158 10.50 0.00 43.38 4.63
1979 4091 2.430367 GCTGGGTTTGACCGAGGT 59.570 61.111 10.50 0.00 43.38 3.85
2033 4145 1.301401 CCAAGTTCGCCGGTCTGAA 60.301 57.895 1.90 2.20 0.00 3.02
2181 4293 3.083997 ACGGGGTCCATCCAGCTC 61.084 66.667 0.00 0.00 38.11 4.09
2271 4383 3.285484 CCTGTACAGTATCCAGTACGGT 58.715 50.000 21.18 0.00 43.02 4.83
2355 4467 0.542702 ACAAGTTCATGGCCCCCTTG 60.543 55.000 0.00 7.79 38.71 3.61
2583 4695 0.915364 AGAGCATCCCTCCCTTGAAC 59.085 55.000 0.00 0.00 41.74 3.18
2592 4704 2.507471 CCCTCCCTTGAACATTAGAGCT 59.493 50.000 0.00 0.00 0.00 4.09
2597 4709 3.539604 CCTTGAACATTAGAGCTGAGGG 58.460 50.000 0.00 0.00 0.00 4.30
2616 4728 1.063649 GCAGACATGATGCTTGCCG 59.936 57.895 16.88 0.00 40.59 5.69
2624 4736 3.181497 ACATGATGCTTGCCGAATAACAC 60.181 43.478 0.00 0.00 0.00 3.32
2627 4739 3.443329 TGATGCTTGCCGAATAACACATT 59.557 39.130 0.00 0.00 0.00 2.71
2674 4786 8.374327 ACGTAGTAATGAATAAAATAGGGCAC 57.626 34.615 0.00 0.00 41.94 5.01
2675 4787 8.208903 ACGTAGTAATGAATAAAATAGGGCACT 58.791 33.333 0.00 0.00 41.94 4.40
2676 4788 9.701098 CGTAGTAATGAATAAAATAGGGCACTA 57.299 33.333 0.00 0.00 0.00 2.74
2740 4852 2.458592 ATAACGTGTAGCCGTACGAC 57.541 50.000 18.76 4.73 42.54 4.34
2936 5075 1.552792 TGGCAGTTATCGTCATGGTGA 59.447 47.619 0.00 0.00 0.00 4.02
3149 5320 4.581409 AGCAAAAATTGGAAGCAGCAAAAT 59.419 33.333 0.00 0.00 0.00 1.82
3151 5324 5.749588 GCAAAAATTGGAAGCAGCAAAATTT 59.250 32.000 0.00 0.00 33.13 1.82
3171 5344 0.245539 TTCTCCGCGGGTCAAAGTAG 59.754 55.000 27.83 12.89 0.00 2.57
3258 5456 3.620374 ACGACATGAGCATTTAAGAGCTG 59.380 43.478 0.00 0.00 42.04 4.24
3265 5463 4.943093 TGAGCATTTAAGAGCTGTGCAATA 59.057 37.500 8.27 0.00 42.04 1.90
3322 5525 4.701956 AATACATCGGTTCCAGCAAAAG 57.298 40.909 0.00 0.00 0.00 2.27
3385 5591 2.203983 TCCCCTCTTGCAGCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
3438 5645 1.227380 GCAGCTCCCGACATCGAAT 60.227 57.895 2.09 0.00 43.02 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.822164 AGGATTTCTCCCGGTACACG 59.178 55.000 0.00 0.00 43.21 4.49
9 10 2.364647 CCTAGGATTTCTCCCGGTACAC 59.635 54.545 1.05 0.00 43.21 2.90
10 11 2.245546 TCCTAGGATTTCTCCCGGTACA 59.754 50.000 7.62 0.00 43.21 2.90
11 12 2.954792 TCCTAGGATTTCTCCCGGTAC 58.045 52.381 7.62 0.00 43.21 3.34
12 13 3.917324 ATCCTAGGATTTCTCCCGGTA 57.083 47.619 19.18 0.00 43.21 4.02
13 14 2.797285 ATCCTAGGATTTCTCCCGGT 57.203 50.000 19.18 0.00 43.21 5.28
14 15 2.028930 CGAATCCTAGGATTTCTCCCGG 60.029 54.545 32.74 15.17 43.98 5.73
15 16 2.628657 ACGAATCCTAGGATTTCTCCCG 59.371 50.000 32.74 30.00 43.98 5.14
16 17 3.007074 GGACGAATCCTAGGATTTCTCCC 59.993 52.174 32.74 25.62 43.98 4.30
17 18 3.305471 CGGACGAATCCTAGGATTTCTCC 60.305 52.174 32.74 31.53 43.98 3.71
18 19 3.305471 CCGGACGAATCCTAGGATTTCTC 60.305 52.174 32.74 27.04 43.98 2.87
19 20 2.628657 CCGGACGAATCCTAGGATTTCT 59.371 50.000 32.74 22.17 43.98 2.52
20 21 2.288886 CCCGGACGAATCCTAGGATTTC 60.289 54.545 32.74 26.44 43.98 2.17
21 22 1.692519 CCCGGACGAATCCTAGGATTT 59.307 52.381 32.74 21.01 43.98 2.17
22 23 1.339097 CCCGGACGAATCCTAGGATT 58.661 55.000 32.80 32.80 46.29 3.01
23 24 0.187851 ACCCGGACGAATCCTAGGAT 59.812 55.000 19.18 19.18 43.73 3.24
24 25 0.846015 TACCCGGACGAATCCTAGGA 59.154 55.000 15.46 15.46 43.73 2.94
25 26 1.245732 CTACCCGGACGAATCCTAGG 58.754 60.000 0.73 0.82 43.73 3.02
26 27 0.597072 GCTACCCGGACGAATCCTAG 59.403 60.000 0.73 0.00 43.73 3.02
27 28 0.106569 TGCTACCCGGACGAATCCTA 60.107 55.000 0.73 0.00 43.73 2.94
28 29 1.380785 TGCTACCCGGACGAATCCT 60.381 57.895 0.73 0.00 43.73 3.24
29 30 1.067582 CTGCTACCCGGACGAATCC 59.932 63.158 0.73 0.00 42.28 3.01
30 31 1.591863 GCTGCTACCCGGACGAATC 60.592 63.158 0.73 0.00 0.00 2.52
31 32 2.499685 GCTGCTACCCGGACGAAT 59.500 61.111 0.73 0.00 0.00 3.34
32 33 4.124351 CGCTGCTACCCGGACGAA 62.124 66.667 0.73 0.00 0.00 3.85
34 35 4.849329 GACGCTGCTACCCGGACG 62.849 72.222 0.73 0.00 0.00 4.79
35 36 4.849329 CGACGCTGCTACCCGGAC 62.849 72.222 0.73 0.00 0.00 4.79
37 38 4.849329 GACGACGCTGCTACCCGG 62.849 72.222 0.00 0.00 0.00 5.73
39 40 4.112341 ACGACGACGCTGCTACCC 62.112 66.667 7.30 0.00 43.96 3.69
40 41 2.576317 GACGACGACGCTGCTACC 60.576 66.667 7.30 0.00 43.96 3.18
41 42 2.938002 CGACGACGACGCTGCTAC 60.938 66.667 7.30 0.00 43.96 3.58
42 43 3.358667 GACGACGACGACGCTGCTA 62.359 63.158 18.98 0.00 43.96 3.49
43 44 4.738345 GACGACGACGACGCTGCT 62.738 66.667 18.98 0.00 43.96 4.24
49 50 2.864248 GACTGCGACGACGACGAC 60.864 66.667 22.94 14.05 42.66 4.34
50 51 4.081030 GGACTGCGACGACGACGA 62.081 66.667 22.94 7.63 42.66 4.20
51 52 3.590443 AAGGACTGCGACGACGACG 62.590 63.158 15.13 15.13 42.66 5.12
52 53 1.796749 GAAGGACTGCGACGACGAC 60.797 63.158 12.29 3.11 42.66 4.34
53 54 1.512996 AAGAAGGACTGCGACGACGA 61.513 55.000 12.29 0.00 42.66 4.20
54 55 1.081376 AAGAAGGACTGCGACGACG 60.081 57.895 2.12 2.12 42.93 5.12
55 56 0.039437 TCAAGAAGGACTGCGACGAC 60.039 55.000 0.00 0.00 0.00 4.34
56 57 0.671796 TTCAAGAAGGACTGCGACGA 59.328 50.000 0.00 0.00 0.00 4.20
57 58 1.063806 CTTCAAGAAGGACTGCGACG 58.936 55.000 1.86 0.00 34.87 5.12
58 59 2.440539 TCTTCAAGAAGGACTGCGAC 57.559 50.000 9.73 0.00 38.88 5.19
59 60 2.300152 ACATCTTCAAGAAGGACTGCGA 59.700 45.455 9.73 0.00 38.88 5.10
60 61 2.693069 ACATCTTCAAGAAGGACTGCG 58.307 47.619 9.73 0.00 38.88 5.18
61 62 3.365767 GCAACATCTTCAAGAAGGACTGC 60.366 47.826 9.73 9.62 38.88 4.40
62 63 4.070716 AGCAACATCTTCAAGAAGGACTG 58.929 43.478 9.73 7.82 38.88 3.51
63 64 4.363991 AGCAACATCTTCAAGAAGGACT 57.636 40.909 9.73 0.00 38.88 3.85
64 65 4.320788 CCAAGCAACATCTTCAAGAAGGAC 60.321 45.833 9.73 0.00 38.88 3.85
65 66 3.822735 CCAAGCAACATCTTCAAGAAGGA 59.177 43.478 9.73 0.00 38.88 3.36
66 67 3.571401 ACCAAGCAACATCTTCAAGAAGG 59.429 43.478 9.73 0.00 38.88 3.46
67 68 4.843220 ACCAAGCAACATCTTCAAGAAG 57.157 40.909 3.43 3.43 39.71 2.85
68 69 5.350633 CAAACCAAGCAACATCTTCAAGAA 58.649 37.500 0.00 0.00 0.00 2.52
69 70 4.737352 GCAAACCAAGCAACATCTTCAAGA 60.737 41.667 0.00 0.00 0.00 3.02
70 71 3.492011 GCAAACCAAGCAACATCTTCAAG 59.508 43.478 0.00 0.00 0.00 3.02
71 72 3.456280 GCAAACCAAGCAACATCTTCAA 58.544 40.909 0.00 0.00 0.00 2.69
72 73 2.543445 CGCAAACCAAGCAACATCTTCA 60.543 45.455 0.00 0.00 0.00 3.02
73 74 2.053627 CGCAAACCAAGCAACATCTTC 58.946 47.619 0.00 0.00 0.00 2.87
74 75 1.269726 CCGCAAACCAAGCAACATCTT 60.270 47.619 0.00 0.00 0.00 2.40
75 76 0.314935 CCGCAAACCAAGCAACATCT 59.685 50.000 0.00 0.00 0.00 2.90
76 77 0.031994 ACCGCAAACCAAGCAACATC 59.968 50.000 0.00 0.00 0.00 3.06
77 78 0.249405 CACCGCAAACCAAGCAACAT 60.249 50.000 0.00 0.00 0.00 2.71
78 79 1.140589 CACCGCAAACCAAGCAACA 59.859 52.632 0.00 0.00 0.00 3.33
79 80 0.869880 GTCACCGCAAACCAAGCAAC 60.870 55.000 0.00 0.00 0.00 4.17
80 81 1.034838 AGTCACCGCAAACCAAGCAA 61.035 50.000 0.00 0.00 0.00 3.91
81 82 1.444119 GAGTCACCGCAAACCAAGCA 61.444 55.000 0.00 0.00 0.00 3.91
82 83 1.282875 GAGTCACCGCAAACCAAGC 59.717 57.895 0.00 0.00 0.00 4.01
83 84 0.878523 TCGAGTCACCGCAAACCAAG 60.879 55.000 0.00 0.00 0.00 3.61
84 85 0.250124 ATCGAGTCACCGCAAACCAA 60.250 50.000 0.00 0.00 0.00 3.67
85 86 0.948623 CATCGAGTCACCGCAAACCA 60.949 55.000 0.00 0.00 0.00 3.67
86 87 1.635663 CCATCGAGTCACCGCAAACC 61.636 60.000 0.00 0.00 0.00 3.27
87 88 1.787847 CCATCGAGTCACCGCAAAC 59.212 57.895 0.00 0.00 0.00 2.93
88 89 2.032634 GCCATCGAGTCACCGCAAA 61.033 57.895 0.00 0.00 0.00 3.68
89 90 2.434185 GCCATCGAGTCACCGCAA 60.434 61.111 0.00 0.00 0.00 4.85
90 91 2.520465 AATGCCATCGAGTCACCGCA 62.520 55.000 0.00 0.00 0.00 5.69
91 92 1.815421 AATGCCATCGAGTCACCGC 60.815 57.895 0.00 0.00 0.00 5.68
92 93 1.431488 CCAATGCCATCGAGTCACCG 61.431 60.000 0.00 0.00 0.00 4.94
93 94 0.107703 TCCAATGCCATCGAGTCACC 60.108 55.000 0.00 0.00 0.00 4.02
94 95 1.293924 CTCCAATGCCATCGAGTCAC 58.706 55.000 0.00 0.00 0.00 3.67
95 96 0.462581 GCTCCAATGCCATCGAGTCA 60.463 55.000 0.00 0.00 0.00 3.41
96 97 0.462581 TGCTCCAATGCCATCGAGTC 60.463 55.000 0.00 0.00 0.00 3.36
97 98 0.182061 ATGCTCCAATGCCATCGAGT 59.818 50.000 0.00 0.00 0.00 4.18
98 99 0.591659 CATGCTCCAATGCCATCGAG 59.408 55.000 0.00 0.00 0.00 4.04
99 100 0.820482 CCATGCTCCAATGCCATCGA 60.820 55.000 0.00 0.00 0.00 3.59
100 101 1.105167 ACCATGCTCCAATGCCATCG 61.105 55.000 0.00 0.00 0.00 3.84
101 102 0.387929 CACCATGCTCCAATGCCATC 59.612 55.000 0.00 0.00 0.00 3.51
102 103 1.046472 CCACCATGCTCCAATGCCAT 61.046 55.000 0.00 0.00 0.00 4.40
103 104 1.683025 CCACCATGCTCCAATGCCA 60.683 57.895 0.00 0.00 0.00 4.92
104 105 0.757935 ATCCACCATGCTCCAATGCC 60.758 55.000 0.00 0.00 0.00 4.40
105 106 0.387929 CATCCACCATGCTCCAATGC 59.612 55.000 0.00 0.00 0.00 3.56
106 107 1.771565 ACATCCACCATGCTCCAATG 58.228 50.000 0.00 0.00 35.65 2.82
107 108 2.537633 AACATCCACCATGCTCCAAT 57.462 45.000 0.00 0.00 35.65 3.16
108 109 2.170166 GAAACATCCACCATGCTCCAA 58.830 47.619 0.00 0.00 35.65 3.53
109 110 1.616725 GGAAACATCCACCATGCTCCA 60.617 52.381 0.00 0.00 37.59 3.86
110 111 1.106285 GGAAACATCCACCATGCTCC 58.894 55.000 0.00 0.00 35.65 4.70
111 112 0.734889 CGGAAACATCCACCATGCTC 59.265 55.000 0.00 0.00 35.65 4.26
112 113 0.038166 ACGGAAACATCCACCATGCT 59.962 50.000 0.00 0.00 35.65 3.79
113 114 0.887933 AACGGAAACATCCACCATGC 59.112 50.000 0.00 0.00 35.65 4.06
114 115 1.202114 CCAACGGAAACATCCACCATG 59.798 52.381 0.00 0.00 38.64 3.66
115 116 1.544724 CCAACGGAAACATCCACCAT 58.455 50.000 0.00 0.00 0.00 3.55
116 117 0.538516 CCCAACGGAAACATCCACCA 60.539 55.000 0.00 0.00 0.00 4.17
117 118 1.873270 GCCCAACGGAAACATCCACC 61.873 60.000 0.00 0.00 0.00 4.61
118 119 1.584495 GCCCAACGGAAACATCCAC 59.416 57.895 0.00 0.00 0.00 4.02
119 120 1.969064 CGCCCAACGGAAACATCCA 60.969 57.895 0.00 0.00 38.44 3.41
120 121 2.874751 CGCCCAACGGAAACATCC 59.125 61.111 0.00 0.00 38.44 3.51
121 122 2.178273 GCGCCCAACGGAAACATC 59.822 61.111 0.00 0.00 43.93 3.06
122 123 2.596046 TGCGCCCAACGGAAACAT 60.596 55.556 4.18 0.00 40.11 2.71
138 139 2.527547 GAAGCATCCCGCAACCGTTG 62.528 60.000 6.91 6.91 46.13 4.10
139 140 2.282180 AAGCATCCCGCAACCGTT 60.282 55.556 0.00 0.00 46.13 4.44
140 141 2.746277 GAAGCATCCCGCAACCGT 60.746 61.111 0.00 0.00 46.13 4.83
141 142 3.864686 CGAAGCATCCCGCAACCG 61.865 66.667 0.00 0.00 46.13 4.44
142 143 3.508840 CCGAAGCATCCCGCAACC 61.509 66.667 0.00 0.00 46.13 3.77
143 144 4.179579 GCCGAAGCATCCCGCAAC 62.180 66.667 0.00 0.00 46.13 4.17
144 145 3.918253 AAGCCGAAGCATCCCGCAA 62.918 57.895 0.00 0.00 46.13 4.85
145 146 3.918253 AAAGCCGAAGCATCCCGCA 62.918 57.895 0.00 0.00 46.13 5.69
146 147 3.113386 GAAAGCCGAAGCATCCCGC 62.113 63.158 0.00 0.00 43.56 6.13
147 148 2.813179 CGAAAGCCGAAGCATCCCG 61.813 63.158 0.00 0.00 43.56 5.14
148 149 1.305930 AACGAAAGCCGAAGCATCCC 61.306 55.000 0.00 0.00 43.56 3.85
149 150 0.097150 GAACGAAAGCCGAAGCATCC 59.903 55.000 0.00 0.00 43.56 3.51
150 151 0.796312 TGAACGAAAGCCGAAGCATC 59.204 50.000 0.00 0.00 43.56 3.91
151 152 1.398390 GATGAACGAAAGCCGAAGCAT 59.602 47.619 0.00 0.00 43.56 3.79
152 153 0.796312 GATGAACGAAAGCCGAAGCA 59.204 50.000 0.00 0.00 43.56 3.91
153 154 0.097150 GGATGAACGAAAGCCGAAGC 59.903 55.000 0.00 0.00 41.76 3.86
154 155 0.370273 CGGATGAACGAAAGCCGAAG 59.630 55.000 7.48 0.00 44.43 3.79
155 156 1.017177 CCGGATGAACGAAAGCCGAA 61.017 55.000 13.38 0.00 44.43 4.30
156 157 1.447140 CCGGATGAACGAAAGCCGA 60.447 57.895 13.38 0.00 44.43 5.54
157 158 1.740296 ACCGGATGAACGAAAGCCG 60.740 57.895 9.46 6.49 45.44 5.52
158 159 1.794222 CACCGGATGAACGAAAGCC 59.206 57.895 9.46 0.00 35.47 4.35
159 160 1.134694 GCACCGGATGAACGAAAGC 59.865 57.895 9.46 0.00 35.47 3.51
160 161 0.443869 CAGCACCGGATGAACGAAAG 59.556 55.000 9.46 0.00 35.47 2.62
161 162 1.573829 GCAGCACCGGATGAACGAAA 61.574 55.000 9.46 0.00 35.47 3.46
162 163 2.032634 GCAGCACCGGATGAACGAA 61.033 57.895 9.46 0.00 35.47 3.85
163 164 2.434185 GCAGCACCGGATGAACGA 60.434 61.111 9.46 0.00 35.47 3.85
164 165 3.499737 GGCAGCACCGGATGAACG 61.500 66.667 9.46 0.00 30.05 3.95
176 177 0.179153 GAGAAAGAAATGCCGGCAGC 60.179 55.000 35.36 24.88 44.14 5.25
177 178 1.457346 AGAGAAAGAAATGCCGGCAG 58.543 50.000 35.36 0.00 0.00 4.85
178 179 1.541147 CAAGAGAAAGAAATGCCGGCA 59.459 47.619 34.80 34.80 0.00 5.69
179 180 1.733718 GCAAGAGAAAGAAATGCCGGC 60.734 52.381 22.73 22.73 0.00 6.13
180 181 1.815003 AGCAAGAGAAAGAAATGCCGG 59.185 47.619 0.00 0.00 37.73 6.13
181 182 3.565905 AAGCAAGAGAAAGAAATGCCG 57.434 42.857 0.00 0.00 37.73 5.69
182 183 5.536260 AGAAAAGCAAGAGAAAGAAATGCC 58.464 37.500 0.00 0.00 37.73 4.40
183 184 6.445475 AGAGAAAAGCAAGAGAAAGAAATGC 58.555 36.000 0.00 0.00 37.28 3.56
184 185 7.919621 ACAAGAGAAAAGCAAGAGAAAGAAATG 59.080 33.333 0.00 0.00 0.00 2.32
185 186 8.005192 ACAAGAGAAAAGCAAGAGAAAGAAAT 57.995 30.769 0.00 0.00 0.00 2.17
186 187 7.396540 ACAAGAGAAAAGCAAGAGAAAGAAA 57.603 32.000 0.00 0.00 0.00 2.52
187 188 7.396540 AACAAGAGAAAAGCAAGAGAAAGAA 57.603 32.000 0.00 0.00 0.00 2.52
188 189 7.396540 AAACAAGAGAAAAGCAAGAGAAAGA 57.603 32.000 0.00 0.00 0.00 2.52
189 190 8.471361 AAAAACAAGAGAAAAGCAAGAGAAAG 57.529 30.769 0.00 0.00 0.00 2.62
211 212 5.435291 ACACAATCATGCCCAAAAGAAAAA 58.565 33.333 0.00 0.00 0.00 1.94
212 213 5.033589 ACACAATCATGCCCAAAAGAAAA 57.966 34.783 0.00 0.00 0.00 2.29
213 214 4.686191 ACACAATCATGCCCAAAAGAAA 57.314 36.364 0.00 0.00 0.00 2.52
214 215 4.141756 ACAACACAATCATGCCCAAAAGAA 60.142 37.500 0.00 0.00 0.00 2.52
215 216 3.387374 ACAACACAATCATGCCCAAAAGA 59.613 39.130 0.00 0.00 0.00 2.52
216 217 3.731089 ACAACACAATCATGCCCAAAAG 58.269 40.909 0.00 0.00 0.00 2.27
217 218 3.834489 ACAACACAATCATGCCCAAAA 57.166 38.095 0.00 0.00 0.00 2.44
218 219 3.834489 AACAACACAATCATGCCCAAA 57.166 38.095 0.00 0.00 0.00 3.28
219 220 3.464907 CAAACAACACAATCATGCCCAA 58.535 40.909 0.00 0.00 0.00 4.12
220 221 2.806019 GCAAACAACACAATCATGCCCA 60.806 45.455 0.00 0.00 0.00 5.36
221 222 1.799994 GCAAACAACACAATCATGCCC 59.200 47.619 0.00 0.00 0.00 5.36
222 223 1.799994 GGCAAACAACACAATCATGCC 59.200 47.619 0.00 0.00 44.24 4.40
223 224 1.799994 GGGCAAACAACACAATCATGC 59.200 47.619 0.00 0.00 0.00 4.06
224 225 2.224233 TGGGGCAAACAACACAATCATG 60.224 45.455 0.00 0.00 0.00 3.07
225 226 2.037511 CTGGGGCAAACAACACAATCAT 59.962 45.455 0.00 0.00 0.00 2.45
226 227 1.411977 CTGGGGCAAACAACACAATCA 59.588 47.619 0.00 0.00 0.00 2.57
227 228 1.873486 GCTGGGGCAAACAACACAATC 60.873 52.381 0.00 0.00 38.54 2.67
228 229 0.106521 GCTGGGGCAAACAACACAAT 59.893 50.000 0.00 0.00 38.54 2.71
229 230 1.260538 TGCTGGGGCAAACAACACAA 61.261 50.000 0.00 0.00 46.36 3.33
230 231 1.683707 TGCTGGGGCAAACAACACA 60.684 52.632 0.00 0.00 46.36 3.72
231 232 3.215245 TGCTGGGGCAAACAACAC 58.785 55.556 0.00 0.00 46.36 3.32
240 241 1.078143 AGAAGTTCGATGCTGGGGC 60.078 57.895 0.00 0.00 39.26 5.80
241 242 0.745845 CCAGAAGTTCGATGCTGGGG 60.746 60.000 5.23 0.00 43.22 4.96
242 243 1.372087 GCCAGAAGTTCGATGCTGGG 61.372 60.000 13.88 6.88 46.20 4.45
244 245 0.725686 CAGCCAGAAGTTCGATGCTG 59.274 55.000 21.52 21.52 40.05 4.41
245 246 0.322975 ACAGCCAGAAGTTCGATGCT 59.677 50.000 9.97 9.97 0.00 3.79
246 247 2.010145 TACAGCCAGAAGTTCGATGC 57.990 50.000 0.00 1.92 0.00 3.91
247 248 2.791560 CGATACAGCCAGAAGTTCGATG 59.208 50.000 0.00 0.00 0.00 3.84
248 249 2.799917 GCGATACAGCCAGAAGTTCGAT 60.800 50.000 0.00 0.00 0.00 3.59
249 250 1.469251 GCGATACAGCCAGAAGTTCGA 60.469 52.381 0.00 0.00 0.00 3.71
250 251 0.924090 GCGATACAGCCAGAAGTTCG 59.076 55.000 0.00 0.00 0.00 3.95
251 252 0.924090 CGCGATACAGCCAGAAGTTC 59.076 55.000 0.00 0.00 0.00 3.01
252 253 0.246635 ACGCGATACAGCCAGAAGTT 59.753 50.000 15.93 0.00 0.00 2.66
253 254 0.458543 CACGCGATACAGCCAGAAGT 60.459 55.000 15.93 0.00 0.00 3.01
254 255 1.148157 CCACGCGATACAGCCAGAAG 61.148 60.000 15.93 0.00 0.00 2.85
255 256 1.153647 CCACGCGATACAGCCAGAA 60.154 57.895 15.93 0.00 0.00 3.02
256 257 1.884075 AACCACGCGATACAGCCAGA 61.884 55.000 15.93 0.00 0.00 3.86
257 258 1.447838 AACCACGCGATACAGCCAG 60.448 57.895 15.93 0.00 0.00 4.85
258 259 1.739929 CAACCACGCGATACAGCCA 60.740 57.895 15.93 0.00 0.00 4.75
259 260 3.089784 CAACCACGCGATACAGCC 58.910 61.111 15.93 0.00 0.00 4.85
260 261 0.804544 TAGCAACCACGCGATACAGC 60.805 55.000 15.93 11.46 36.85 4.40
261 262 1.852942 ATAGCAACCACGCGATACAG 58.147 50.000 15.93 0.00 36.85 2.74
262 263 3.653539 ATATAGCAACCACGCGATACA 57.346 42.857 15.93 0.00 33.19 2.29
263 264 6.642683 ATTAATATAGCAACCACGCGATAC 57.357 37.500 15.93 0.00 33.19 2.24
264 265 9.673454 CTATATTAATATAGCAACCACGCGATA 57.327 33.333 23.27 0.00 36.77 2.92
265 266 8.575565 CTATATTAATATAGCAACCACGCGAT 57.424 34.615 23.27 0.00 36.77 4.58
266 267 7.980742 CTATATTAATATAGCAACCACGCGA 57.019 36.000 23.27 0.00 36.77 5.87
277 278 6.202954 GCTTGTGCCCCGCTATATTAATATAG 59.797 42.308 27.69 27.69 43.16 1.31
278 279 6.053005 GCTTGTGCCCCGCTATATTAATATA 58.947 40.000 13.36 13.36 0.00 0.86
279 280 4.881850 GCTTGTGCCCCGCTATATTAATAT 59.118 41.667 12.51 12.51 0.00 1.28
280 281 4.258543 GCTTGTGCCCCGCTATATTAATA 58.741 43.478 0.00 0.00 0.00 0.98
281 282 3.081804 GCTTGTGCCCCGCTATATTAAT 58.918 45.455 0.00 0.00 0.00 1.40
282 283 2.500229 GCTTGTGCCCCGCTATATTAA 58.500 47.619 0.00 0.00 0.00 1.40
283 284 2.178912 GCTTGTGCCCCGCTATATTA 57.821 50.000 0.00 0.00 0.00 0.98
284 285 3.021451 GCTTGTGCCCCGCTATATT 57.979 52.632 0.00 0.00 0.00 1.28
285 286 4.800554 GCTTGTGCCCCGCTATAT 57.199 55.556 0.00 0.00 0.00 0.86
295 296 2.880963 TTACCAAAACAGGCTTGTGC 57.119 45.000 0.65 0.00 37.67 4.57
296 297 4.754322 ACTTTTACCAAAACAGGCTTGTG 58.246 39.130 0.65 0.00 37.67 3.33
297 298 6.406512 CCTTACTTTTACCAAAACAGGCTTGT 60.407 38.462 0.00 0.00 39.87 3.16
298 299 5.983118 CCTTACTTTTACCAAAACAGGCTTG 59.017 40.000 0.00 0.00 0.00 4.01
299 300 5.452776 GCCTTACTTTTACCAAAACAGGCTT 60.453 40.000 12.85 0.00 38.63 4.35
300 301 4.038763 GCCTTACTTTTACCAAAACAGGCT 59.961 41.667 12.85 0.00 38.63 4.58
301 302 4.202172 TGCCTTACTTTTACCAAAACAGGC 60.202 41.667 13.07 13.07 40.32 4.85
302 303 5.523438 TGCCTTACTTTTACCAAAACAGG 57.477 39.130 0.00 0.00 0.00 4.00
303 304 6.801575 TCTTGCCTTACTTTTACCAAAACAG 58.198 36.000 0.00 0.00 0.00 3.16
304 305 6.777213 TCTTGCCTTACTTTTACCAAAACA 57.223 33.333 0.00 0.00 0.00 2.83
305 306 8.481974 TTTTCTTGCCTTACTTTTACCAAAAC 57.518 30.769 0.00 0.00 0.00 2.43
377 379 7.895975 TCTCAATGAGTTTAACATGAGACTG 57.104 36.000 10.36 0.00 32.68 3.51
427 429 4.209307 ACCCCGCAAAAAGAAAGAAAAA 57.791 36.364 0.00 0.00 0.00 1.94
430 432 4.022676 GTGATACCCCGCAAAAAGAAAGAA 60.023 41.667 0.00 0.00 0.00 2.52
431 433 3.504520 GTGATACCCCGCAAAAAGAAAGA 59.495 43.478 0.00 0.00 0.00 2.52
432 434 3.254657 TGTGATACCCCGCAAAAAGAAAG 59.745 43.478 0.00 0.00 0.00 2.62
433 435 3.223435 TGTGATACCCCGCAAAAAGAAA 58.777 40.909 0.00 0.00 0.00 2.52
435 437 2.224670 ACTGTGATACCCCGCAAAAAGA 60.225 45.455 0.00 0.00 0.00 2.52
438 440 1.072489 TCACTGTGATACCCCGCAAAA 59.928 47.619 6.36 0.00 0.00 2.44
439 441 0.687920 TCACTGTGATACCCCGCAAA 59.312 50.000 6.36 0.00 0.00 3.68
440 442 0.908910 ATCACTGTGATACCCCGCAA 59.091 50.000 21.10 0.00 34.88 4.85
441 443 1.783071 TATCACTGTGATACCCCGCA 58.217 50.000 23.01 4.92 38.26 5.69
560 562 5.129368 ACCCAAGCATAATACATCCAACT 57.871 39.130 0.00 0.00 0.00 3.16
648 651 9.439500 AGTAACGCAACATACCTTAAGATAAAA 57.561 29.630 3.36 0.00 0.00 1.52
662 668 4.092968 GCAACTTAGCTAGTAACGCAACAT 59.907 41.667 0.00 0.00 35.54 2.71
688 694 4.522789 GGAAACAAGATTGCCTAAGGTTGA 59.477 41.667 0.00 0.00 0.00 3.18
691 697 4.388577 AGGAAACAAGATTGCCTAAGGT 57.611 40.909 0.00 0.00 0.00 3.50
830 880 3.944087 ACAGCCTCCTTGTCTTATTGAC 58.056 45.455 0.00 0.00 45.54 3.18
836 886 2.576615 GTGAAACAGCCTCCTTGTCTT 58.423 47.619 0.00 0.00 36.32 3.01
846 897 0.179225 CATACGCACGTGAAACAGCC 60.179 55.000 22.23 0.00 35.74 4.85
864 915 2.102109 AATCCACCGTGTGCCGTACA 62.102 55.000 0.00 0.00 36.82 2.90
875 926 3.866883 AGTTTGGCAATTAATCCACCG 57.133 42.857 0.00 0.00 30.97 4.94
915 966 5.710099 TCTGGATTGAAAATGGTTGTAGTCC 59.290 40.000 0.00 0.00 0.00 3.85
1030 1084 3.214328 GAAGTGACAAGAGGAGGCAAAA 58.786 45.455 0.00 0.00 0.00 2.44
1099 1156 2.435059 GTTGGAGACGAGGCAGGC 60.435 66.667 0.00 0.00 0.00 4.85
1233 1298 2.423898 TTCATCCCTCGACTCCGGC 61.424 63.158 0.00 0.00 36.24 6.13
1251 1316 2.364842 AGGATGGCTCGCCTCAGT 60.365 61.111 9.65 0.00 36.94 3.41
1369 3481 1.592400 TTCAGGTTCGCGAGGTCGAT 61.592 55.000 9.59 0.00 43.02 3.59
1605 3717 2.415608 GCCGTCCGGAGTGATGAGA 61.416 63.158 3.06 0.00 37.50 3.27
1899 4011 0.830444 ACTCCAGCACTTGACCGGTA 60.830 55.000 7.34 0.00 0.00 4.02
2140 4252 3.998672 GGTCGACAGGTGCCGGAA 61.999 66.667 18.91 0.00 0.00 4.30
2271 4383 2.863346 CGACCGGTCCCAGTTCACA 61.863 63.158 28.52 0.00 0.00 3.58
2355 4467 2.590092 CGGGGATCCTTGGACACC 59.410 66.667 12.58 0.93 0.00 4.16
2379 4491 2.351111 GAGGTCGAGGTAGTTCACGTAG 59.649 54.545 0.00 0.00 0.00 3.51
2448 4560 2.357034 GCACGAGAAACCGCCTGA 60.357 61.111 0.00 0.00 0.00 3.86
2457 4569 2.559840 GACGACCTCGCACGAGAA 59.440 61.111 21.01 0.00 44.53 2.87
2458 4570 3.785499 CGACGACCTCGCACGAGA 61.785 66.667 21.01 0.00 44.53 4.04
2583 4695 1.126488 TCTGCCCCTCAGCTCTAATG 58.874 55.000 0.00 0.00 42.56 1.90
2592 4704 1.225426 GCATCATGTCTGCCCCTCA 59.775 57.895 10.65 0.00 33.44 3.86
2597 4709 1.436336 GGCAAGCATCATGTCTGCC 59.564 57.895 14.26 14.26 40.56 4.85
2616 4728 3.427503 CCTCACGGCCAAATGTGTTATTC 60.428 47.826 2.24 0.00 37.38 1.75
2624 4736 2.620251 TATCTCCTCACGGCCAAATG 57.380 50.000 2.24 0.00 0.00 2.32
2627 4739 1.138859 CACATATCTCCTCACGGCCAA 59.861 52.381 2.24 0.00 0.00 4.52
2658 4770 6.465321 GGCCTAGTAGTGCCCTATTTTATTCA 60.465 42.308 15.26 0.00 41.97 2.57
2671 4783 2.084546 CAAAGTTGGGCCTAGTAGTGC 58.915 52.381 4.53 0.00 0.00 4.40
2672 4784 3.600388 CTCAAAGTTGGGCCTAGTAGTG 58.400 50.000 4.53 2.63 0.00 2.74
2673 4785 3.983044 CTCAAAGTTGGGCCTAGTAGT 57.017 47.619 4.53 0.00 0.00 2.73
2740 4852 3.430098 CCTGACGAAAGAAGATGAGGGAG 60.430 52.174 0.00 0.00 0.00 4.30
2784 4904 0.107508 CATGGAGGCACGATGGAACT 60.108 55.000 0.00 0.00 32.38 3.01
2785 4905 2.397751 CATGGAGGCACGATGGAAC 58.602 57.895 0.00 0.00 32.38 3.62
2918 5057 3.485877 GCTTTCACCATGACGATAACTGC 60.486 47.826 0.00 0.00 0.00 4.40
2923 5062 5.697473 TTTTTGCTTTCACCATGACGATA 57.303 34.783 0.00 0.00 0.00 2.92
3024 5168 6.881065 AGCTGAATCTAGCAATTTGTTCTGTA 59.119 34.615 0.00 0.00 46.07 2.74
3025 5169 5.709164 AGCTGAATCTAGCAATTTGTTCTGT 59.291 36.000 0.00 0.00 46.07 3.41
3149 5320 0.948678 CTTTGACCCGCGGAGAAAAA 59.051 50.000 30.73 19.19 0.00 1.94
3151 5324 0.680618 TACTTTGACCCGCGGAGAAA 59.319 50.000 30.73 19.84 0.00 2.52
3171 5344 4.036734 TGATTTTGCTTCAACTGACCACTC 59.963 41.667 0.00 0.00 0.00 3.51
3322 5525 2.344142 CGTTTTGCCGAACCAATTATGC 59.656 45.455 0.00 0.00 0.00 3.14
3385 5591 2.772691 GCTGCGACCGGCTACTAGT 61.773 63.158 0.00 0.00 44.05 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.