Multiple sequence alignment - TraesCS3A01G374600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G374600 chr3A 100.000 3605 0 0 1 3605 624059690 624056086 0.000000e+00 6658.0
1 TraesCS3A01G374600 chr3A 92.127 1702 131 3 971 2672 624186298 624184600 0.000000e+00 2398.0
2 TraesCS3A01G374600 chr3A 91.304 69 6 0 902 970 624186388 624186320 1.070000e-15 95.3
3 TraesCS3A01G374600 chr3D 94.582 1698 85 2 969 2666 481292076 481290386 0.000000e+00 2619.0
4 TraesCS3A01G374600 chr3D 91.657 1774 124 10 902 2654 481393607 481391837 0.000000e+00 2435.0
5 TraesCS3A01G374600 chr3D 84.979 952 100 20 2684 3605 594050895 594051833 0.000000e+00 926.0
6 TraesCS3A01G374600 chr3D 86.093 302 16 7 594 882 481292416 481292128 5.850000e-78 302.0
7 TraesCS3A01G374600 chr3B 94.461 1661 88 3 969 2629 642311356 642309700 0.000000e+00 2555.0
8 TraesCS3A01G374600 chr3B 91.394 1069 85 1 1604 2672 642391293 642390232 0.000000e+00 1458.0
9 TraesCS3A01G374600 chr3B 90.765 379 29 5 969 1344 642406113 642405738 5.370000e-138 501.0
10 TraesCS3A01G374600 chr3B 94.237 295 7 6 594 887 642311688 642311403 3.300000e-120 442.0
11 TraesCS3A01G374600 chr3B 90.370 270 26 0 1336 1605 642403699 642403430 4.430000e-94 355.0
12 TraesCS3A01G374600 chr3B 86.989 269 24 8 969 1229 642460405 642460140 3.520000e-75 292.0
13 TraesCS3A01G374600 chr3B 80.435 184 25 7 413 590 642312119 642311941 2.920000e-26 130.0
14 TraesCS3A01G374600 chr3B 93.651 63 4 0 907 969 642406196 642406134 1.070000e-15 95.3
15 TraesCS3A01G374600 chr5B 88.353 953 70 9 2682 3605 473476483 473477423 0.000000e+00 1107.0
16 TraesCS3A01G374600 chr5B 85.819 952 93 16 2682 3605 592826170 592825233 0.000000e+00 972.0
17 TraesCS3A01G374600 chr7D 86.091 949 93 12 2684 3605 541415760 541416696 0.000000e+00 985.0
18 TraesCS3A01G374600 chr7D 85.474 950 96 20 2684 3605 385515277 385516212 0.000000e+00 952.0
19 TraesCS3A01G374600 chr7D 88.220 781 80 6 2828 3605 554487668 554488439 0.000000e+00 922.0
20 TraesCS3A01G374600 chrUn 85.970 948 87 18 2682 3597 45512972 45513905 0.000000e+00 972.0
21 TraesCS3A01G374600 chr6B 85.609 952 94 18 2682 3605 42547121 42548057 0.000000e+00 959.0
22 TraesCS3A01G374600 chr6D 85.368 950 99 13 2684 3605 31119258 31118321 0.000000e+00 948.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G374600 chr3A 624056086 624059690 3604 True 6658.000000 6658 100.000000 1 3605 1 chr3A.!!$R1 3604
1 TraesCS3A01G374600 chr3A 624184600 624186388 1788 True 1246.650000 2398 91.715500 902 2672 2 chr3A.!!$R2 1770
2 TraesCS3A01G374600 chr3D 481391837 481393607 1770 True 2435.000000 2435 91.657000 902 2654 1 chr3D.!!$R1 1752
3 TraesCS3A01G374600 chr3D 481290386 481292416 2030 True 1460.500000 2619 90.337500 594 2666 2 chr3D.!!$R2 2072
4 TraesCS3A01G374600 chr3D 594050895 594051833 938 False 926.000000 926 84.979000 2684 3605 1 chr3D.!!$F1 921
5 TraesCS3A01G374600 chr3B 642390232 642391293 1061 True 1458.000000 1458 91.394000 1604 2672 1 chr3B.!!$R1 1068
6 TraesCS3A01G374600 chr3B 642309700 642312119 2419 True 1042.333333 2555 89.711000 413 2629 3 chr3B.!!$R3 2216
7 TraesCS3A01G374600 chr3B 642403430 642406196 2766 True 317.100000 501 91.595333 907 1605 3 chr3B.!!$R4 698
8 TraesCS3A01G374600 chr5B 473476483 473477423 940 False 1107.000000 1107 88.353000 2682 3605 1 chr5B.!!$F1 923
9 TraesCS3A01G374600 chr5B 592825233 592826170 937 True 972.000000 972 85.819000 2682 3605 1 chr5B.!!$R1 923
10 TraesCS3A01G374600 chr7D 541415760 541416696 936 False 985.000000 985 86.091000 2684 3605 1 chr7D.!!$F2 921
11 TraesCS3A01G374600 chr7D 385515277 385516212 935 False 952.000000 952 85.474000 2684 3605 1 chr7D.!!$F1 921
12 TraesCS3A01G374600 chr7D 554487668 554488439 771 False 922.000000 922 88.220000 2828 3605 1 chr7D.!!$F3 777
13 TraesCS3A01G374600 chrUn 45512972 45513905 933 False 972.000000 972 85.970000 2682 3597 1 chrUn.!!$F1 915
14 TraesCS3A01G374600 chr6B 42547121 42548057 936 False 959.000000 959 85.609000 2682 3605 1 chr6B.!!$F1 923
15 TraesCS3A01G374600 chr6D 31118321 31119258 937 True 948.000000 948 85.368000 2684 3605 1 chr6D.!!$R1 921

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 339 0.033228 CCATGTCAGCTCGGGAGATC 59.967 60.0 0.00 0.00 38.80 2.75 F
384 385 0.039180 AAAGAAGCTAAACCCGGGGG 59.961 55.0 27.92 12.92 42.03 5.40 F
452 453 0.319900 TCTCACAAGAAGCCACGAGC 60.320 55.0 0.00 0.00 44.25 5.03 F
1935 4276 0.040514 TTGCGTCAAAAGACCATGCG 60.041 50.0 0.00 0.00 0.00 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1447 3788 0.388907 GCGTAGTACAACTCGCCCAA 60.389 55.000 0.38 0.0 38.15 4.12 R
1935 4276 1.264288 CTTTGGCTGAGAACCGACAAC 59.736 52.381 0.00 0.0 0.00 3.32 R
2400 4741 1.248101 TGTTCACGCCCAGATCGAGA 61.248 55.000 0.00 0.0 0.00 4.04 R
3020 5398 0.306840 CCGTAATACTCGCTCTCGCA 59.693 55.000 0.00 0.0 35.30 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.806949 ATGGGAGAAAGTTTAGTGGCA 57.193 42.857 0.00 0.00 0.00 4.92
21 22 3.586470 TGGGAGAAAGTTTAGTGGCAA 57.414 42.857 0.00 0.00 0.00 4.52
22 23 3.904717 TGGGAGAAAGTTTAGTGGCAAA 58.095 40.909 0.00 0.00 0.00 3.68
23 24 4.479158 TGGGAGAAAGTTTAGTGGCAAAT 58.521 39.130 0.00 0.00 0.00 2.32
24 25 4.280677 TGGGAGAAAGTTTAGTGGCAAATG 59.719 41.667 0.00 0.00 0.00 2.32
25 26 4.237724 GGAGAAAGTTTAGTGGCAAATGC 58.762 43.478 0.00 0.00 41.14 3.56
26 27 4.021981 GGAGAAAGTTTAGTGGCAAATGCT 60.022 41.667 5.25 0.00 41.70 3.79
27 28 5.509670 GGAGAAAGTTTAGTGGCAAATGCTT 60.510 40.000 5.25 0.00 41.70 3.91
28 29 5.917462 AGAAAGTTTAGTGGCAAATGCTTT 58.083 33.333 5.25 0.00 41.70 3.51
29 30 5.754890 AGAAAGTTTAGTGGCAAATGCTTTG 59.245 36.000 5.25 0.00 43.44 2.77
30 31 3.993920 AGTTTAGTGGCAAATGCTTTGG 58.006 40.909 5.25 0.00 40.94 3.28
31 32 3.640967 AGTTTAGTGGCAAATGCTTTGGA 59.359 39.130 5.25 0.00 40.94 3.53
32 33 3.940209 TTAGTGGCAAATGCTTTGGAG 57.060 42.857 5.25 0.00 40.94 3.86
33 34 0.971386 AGTGGCAAATGCTTTGGAGG 59.029 50.000 5.25 0.00 40.94 4.30
34 35 0.037046 GTGGCAAATGCTTTGGAGGG 60.037 55.000 5.25 0.00 40.94 4.30
35 36 1.193462 TGGCAAATGCTTTGGAGGGG 61.193 55.000 5.25 0.00 40.94 4.79
36 37 0.904394 GGCAAATGCTTTGGAGGGGA 60.904 55.000 5.25 0.00 40.94 4.81
37 38 0.975887 GCAAATGCTTTGGAGGGGAA 59.024 50.000 0.00 0.00 40.94 3.97
38 39 1.556451 GCAAATGCTTTGGAGGGGAAT 59.444 47.619 0.00 0.00 40.94 3.01
39 40 2.026915 GCAAATGCTTTGGAGGGGAATT 60.027 45.455 0.00 0.00 40.94 2.17
40 41 3.559811 GCAAATGCTTTGGAGGGGAATTT 60.560 43.478 0.00 0.00 40.94 1.82
41 42 4.256110 CAAATGCTTTGGAGGGGAATTTC 58.744 43.478 1.94 0.00 37.01 2.17
42 43 1.544724 TGCTTTGGAGGGGAATTTCG 58.455 50.000 0.00 0.00 0.00 3.46
43 44 0.173481 GCTTTGGAGGGGAATTTCGC 59.827 55.000 4.95 4.95 0.00 4.70
44 45 1.544724 CTTTGGAGGGGAATTTCGCA 58.455 50.000 14.52 0.00 0.00 5.10
45 46 1.892474 CTTTGGAGGGGAATTTCGCAA 59.108 47.619 14.52 0.00 0.00 4.85
46 47 2.230130 TTGGAGGGGAATTTCGCAAT 57.770 45.000 14.52 3.40 0.00 3.56
47 48 3.374042 TTGGAGGGGAATTTCGCAATA 57.626 42.857 14.52 0.00 0.00 1.90
48 49 2.930950 TGGAGGGGAATTTCGCAATAG 58.069 47.619 14.52 0.00 0.00 1.73
49 50 2.241176 TGGAGGGGAATTTCGCAATAGT 59.759 45.455 14.52 0.00 0.00 2.12
50 51 2.618709 GGAGGGGAATTTCGCAATAGTG 59.381 50.000 14.52 0.00 0.00 2.74
51 52 3.279434 GAGGGGAATTTCGCAATAGTGT 58.721 45.455 14.52 0.00 0.00 3.55
52 53 3.694566 GAGGGGAATTTCGCAATAGTGTT 59.305 43.478 14.52 0.00 0.00 3.32
53 54 3.443681 AGGGGAATTTCGCAATAGTGTTG 59.556 43.478 14.52 0.00 0.00 3.33
54 55 3.442273 GGGGAATTTCGCAATAGTGTTGA 59.558 43.478 14.52 0.00 0.00 3.18
55 56 4.097892 GGGGAATTTCGCAATAGTGTTGAT 59.902 41.667 14.52 0.00 0.00 2.57
56 57 5.273944 GGGAATTTCGCAATAGTGTTGATC 58.726 41.667 3.47 0.00 0.00 2.92
57 58 5.163663 GGGAATTTCGCAATAGTGTTGATCA 60.164 40.000 3.47 0.00 0.00 2.92
58 59 6.321717 GGAATTTCGCAATAGTGTTGATCAA 58.678 36.000 3.38 3.38 0.00 2.57
59 60 6.251376 GGAATTTCGCAATAGTGTTGATCAAC 59.749 38.462 28.10 28.10 41.50 3.18
60 61 3.989705 TCGCAATAGTGTTGATCAACG 57.010 42.857 28.55 16.81 43.94 4.10
69 70 4.197107 GTGTTGATCAACGCTATTAGCC 57.803 45.455 34.27 10.78 45.50 3.93
70 71 3.871594 GTGTTGATCAACGCTATTAGCCT 59.128 43.478 34.27 0.00 45.50 4.58
71 72 5.047847 GTGTTGATCAACGCTATTAGCCTA 58.952 41.667 34.27 12.51 45.50 3.93
72 73 5.522460 GTGTTGATCAACGCTATTAGCCTAA 59.478 40.000 34.27 12.33 45.50 2.69
73 74 6.036735 GTGTTGATCAACGCTATTAGCCTAAA 59.963 38.462 34.27 11.95 45.50 1.85
74 75 6.257849 TGTTGATCAACGCTATTAGCCTAAAG 59.742 38.462 28.55 0.00 43.94 1.85
75 76 6.156748 TGATCAACGCTATTAGCCTAAAGA 57.843 37.500 10.04 2.49 38.18 2.52
76 77 6.216569 TGATCAACGCTATTAGCCTAAAGAG 58.783 40.000 10.04 0.00 38.18 2.85
77 78 4.945246 TCAACGCTATTAGCCTAAAGAGG 58.055 43.478 10.04 0.00 46.93 3.69
87 88 2.990066 CCTAAAGAGGCGAATCTGGT 57.010 50.000 0.00 0.00 35.54 4.00
88 89 2.827652 CCTAAAGAGGCGAATCTGGTC 58.172 52.381 0.00 0.00 35.54 4.02
89 90 2.168521 CCTAAAGAGGCGAATCTGGTCA 59.831 50.000 0.00 0.00 35.54 4.02
90 91 2.393271 AAAGAGGCGAATCTGGTCAG 57.607 50.000 0.00 0.00 0.00 3.51
91 92 0.107945 AAGAGGCGAATCTGGTCAGC 60.108 55.000 0.00 0.00 0.00 4.26
92 93 0.975040 AGAGGCGAATCTGGTCAGCT 60.975 55.000 0.00 0.00 0.00 4.24
93 94 0.529555 GAGGCGAATCTGGTCAGCTC 60.530 60.000 0.00 0.00 0.00 4.09
94 95 1.522580 GGCGAATCTGGTCAGCTCC 60.523 63.158 0.00 0.00 0.00 4.70
95 96 1.522580 GCGAATCTGGTCAGCTCCC 60.523 63.158 0.00 0.00 0.00 4.30
96 97 1.965754 GCGAATCTGGTCAGCTCCCT 61.966 60.000 0.87 0.00 0.00 4.20
97 98 0.539051 CGAATCTGGTCAGCTCCCTT 59.461 55.000 0.87 0.00 0.00 3.95
98 99 1.741732 CGAATCTGGTCAGCTCCCTTG 60.742 57.143 0.87 0.00 0.00 3.61
99 100 1.556911 GAATCTGGTCAGCTCCCTTGA 59.443 52.381 0.87 0.53 0.00 3.02
100 101 0.908198 ATCTGGTCAGCTCCCTTGAC 59.092 55.000 0.87 0.00 43.25 3.18
104 105 3.239861 GTCAGCTCCCTTGACCTTG 57.760 57.895 0.00 0.00 39.17 3.61
105 106 0.322008 GTCAGCTCCCTTGACCTTGG 60.322 60.000 0.00 0.00 39.17 3.61
106 107 1.001641 CAGCTCCCTTGACCTTGGG 60.002 63.158 0.00 0.00 44.66 4.12
112 113 2.134789 CCCTTGACCTTGGGAATCAG 57.865 55.000 0.00 0.00 46.15 2.90
113 114 1.355720 CCCTTGACCTTGGGAATCAGT 59.644 52.381 0.00 0.00 46.15 3.41
114 115 2.440409 CCTTGACCTTGGGAATCAGTG 58.560 52.381 0.00 0.00 0.00 3.66
115 116 2.224867 CCTTGACCTTGGGAATCAGTGT 60.225 50.000 0.00 0.00 0.00 3.55
116 117 3.490348 CTTGACCTTGGGAATCAGTGTT 58.510 45.455 0.00 0.00 0.00 3.32
117 118 4.506625 CCTTGACCTTGGGAATCAGTGTTA 60.507 45.833 0.00 0.00 0.00 2.41
118 119 4.715534 TGACCTTGGGAATCAGTGTTAA 57.284 40.909 0.00 0.00 0.00 2.01
119 120 5.055265 TGACCTTGGGAATCAGTGTTAAA 57.945 39.130 0.00 0.00 0.00 1.52
120 121 5.070001 TGACCTTGGGAATCAGTGTTAAAG 58.930 41.667 0.00 0.00 0.00 1.85
121 122 5.163141 TGACCTTGGGAATCAGTGTTAAAGA 60.163 40.000 0.00 0.00 0.00 2.52
122 123 5.701224 ACCTTGGGAATCAGTGTTAAAGAA 58.299 37.500 0.00 0.00 0.00 2.52
123 124 5.770162 ACCTTGGGAATCAGTGTTAAAGAAG 59.230 40.000 0.00 0.00 0.00 2.85
124 125 5.770162 CCTTGGGAATCAGTGTTAAAGAAGT 59.230 40.000 0.00 0.00 0.00 3.01
125 126 6.294176 CCTTGGGAATCAGTGTTAAAGAAGTG 60.294 42.308 0.00 0.00 0.00 3.16
126 127 5.690865 TGGGAATCAGTGTTAAAGAAGTGT 58.309 37.500 0.00 0.00 0.00 3.55
127 128 6.833041 TGGGAATCAGTGTTAAAGAAGTGTA 58.167 36.000 0.00 0.00 0.00 2.90
128 129 7.458397 TGGGAATCAGTGTTAAAGAAGTGTAT 58.542 34.615 0.00 0.00 0.00 2.29
129 130 7.942341 TGGGAATCAGTGTTAAAGAAGTGTATT 59.058 33.333 0.00 0.00 0.00 1.89
130 131 8.793592 GGGAATCAGTGTTAAAGAAGTGTATTT 58.206 33.333 0.00 0.00 0.00 1.40
148 149 7.892803 GTGTATTTAAGACACGATAAGTCCAC 58.107 38.462 7.11 0.00 38.01 4.02
149 150 7.758528 GTGTATTTAAGACACGATAAGTCCACT 59.241 37.037 7.11 0.00 38.01 4.00
150 151 7.758076 TGTATTTAAGACACGATAAGTCCACTG 59.242 37.037 0.00 0.00 36.68 3.66
151 152 5.717078 TTAAGACACGATAAGTCCACTGT 57.283 39.130 0.00 0.00 36.68 3.55
152 153 6.822667 TTAAGACACGATAAGTCCACTGTA 57.177 37.500 0.00 0.00 36.68 2.74
153 154 5.916661 AAGACACGATAAGTCCACTGTAT 57.083 39.130 0.00 0.00 36.68 2.29
154 155 5.250235 AGACACGATAAGTCCACTGTATG 57.750 43.478 0.00 0.00 36.68 2.39
155 156 4.705507 AGACACGATAAGTCCACTGTATGT 59.294 41.667 0.00 0.00 36.68 2.29
156 157 5.884232 AGACACGATAAGTCCACTGTATGTA 59.116 40.000 0.00 0.00 36.68 2.29
157 158 6.038382 AGACACGATAAGTCCACTGTATGTAG 59.962 42.308 0.00 0.00 36.68 2.74
158 159 5.067413 ACACGATAAGTCCACTGTATGTAGG 59.933 44.000 0.00 0.00 0.00 3.18
159 160 4.037684 ACGATAAGTCCACTGTATGTAGGC 59.962 45.833 0.00 0.00 0.00 3.93
160 161 4.037565 CGATAAGTCCACTGTATGTAGGCA 59.962 45.833 0.00 0.00 0.00 4.75
161 162 3.895232 AAGTCCACTGTATGTAGGCAG 57.105 47.619 0.00 0.00 38.58 4.85
162 163 3.101643 AGTCCACTGTATGTAGGCAGA 57.898 47.619 0.00 0.00 36.62 4.26
163 164 3.441101 AGTCCACTGTATGTAGGCAGAA 58.559 45.455 0.00 0.00 36.62 3.02
164 165 3.838317 AGTCCACTGTATGTAGGCAGAAA 59.162 43.478 0.00 0.00 36.62 2.52
165 166 3.933332 GTCCACTGTATGTAGGCAGAAAC 59.067 47.826 0.00 0.00 36.62 2.78
166 167 3.055385 TCCACTGTATGTAGGCAGAAACC 60.055 47.826 0.00 0.00 36.62 3.27
167 168 3.270877 CACTGTATGTAGGCAGAAACCC 58.729 50.000 0.00 0.00 36.62 4.11
168 169 2.910319 ACTGTATGTAGGCAGAAACCCA 59.090 45.455 0.00 0.00 36.62 4.51
169 170 3.055094 ACTGTATGTAGGCAGAAACCCAG 60.055 47.826 0.00 0.00 36.62 4.45
170 171 2.238646 TGTATGTAGGCAGAAACCCAGG 59.761 50.000 0.00 0.00 0.00 4.45
171 172 0.034089 ATGTAGGCAGAAACCCAGGC 60.034 55.000 0.00 0.00 0.00 4.85
172 173 1.378762 GTAGGCAGAAACCCAGGCA 59.621 57.895 0.00 0.00 0.00 4.75
173 174 0.678048 GTAGGCAGAAACCCAGGCAG 60.678 60.000 0.00 0.00 0.00 4.85
174 175 0.840288 TAGGCAGAAACCCAGGCAGA 60.840 55.000 0.00 0.00 0.00 4.26
175 176 1.000396 GGCAGAAACCCAGGCAGAT 60.000 57.895 0.00 0.00 0.00 2.90
176 177 0.255890 GGCAGAAACCCAGGCAGATA 59.744 55.000 0.00 0.00 0.00 1.98
177 178 1.673168 GCAGAAACCCAGGCAGATAG 58.327 55.000 0.00 0.00 0.00 2.08
178 179 1.210478 GCAGAAACCCAGGCAGATAGA 59.790 52.381 0.00 0.00 0.00 1.98
179 180 2.744494 GCAGAAACCCAGGCAGATAGAG 60.744 54.545 0.00 0.00 0.00 2.43
180 181 2.503356 CAGAAACCCAGGCAGATAGAGT 59.497 50.000 0.00 0.00 0.00 3.24
181 182 3.706594 CAGAAACCCAGGCAGATAGAGTA 59.293 47.826 0.00 0.00 0.00 2.59
182 183 4.162320 CAGAAACCCAGGCAGATAGAGTAA 59.838 45.833 0.00 0.00 0.00 2.24
183 184 4.783227 AGAAACCCAGGCAGATAGAGTAAA 59.217 41.667 0.00 0.00 0.00 2.01
184 185 5.430089 AGAAACCCAGGCAGATAGAGTAAAT 59.570 40.000 0.00 0.00 0.00 1.40
185 186 6.615726 AGAAACCCAGGCAGATAGAGTAAATA 59.384 38.462 0.00 0.00 0.00 1.40
186 187 6.824958 AACCCAGGCAGATAGAGTAAATAA 57.175 37.500 0.00 0.00 0.00 1.40
187 188 6.426646 ACCCAGGCAGATAGAGTAAATAAG 57.573 41.667 0.00 0.00 0.00 1.73
188 189 5.905913 ACCCAGGCAGATAGAGTAAATAAGT 59.094 40.000 0.00 0.00 0.00 2.24
189 190 6.183361 ACCCAGGCAGATAGAGTAAATAAGTG 60.183 42.308 0.00 0.00 0.00 3.16
190 191 6.226787 CCAGGCAGATAGAGTAAATAAGTGG 58.773 44.000 0.00 0.00 0.00 4.00
191 192 6.183361 CCAGGCAGATAGAGTAAATAAGTGGT 60.183 42.308 0.00 0.00 0.00 4.16
192 193 7.275920 CAGGCAGATAGAGTAAATAAGTGGTT 58.724 38.462 0.00 0.00 0.00 3.67
193 194 7.770897 CAGGCAGATAGAGTAAATAAGTGGTTT 59.229 37.037 0.00 0.00 0.00 3.27
194 195 7.988028 AGGCAGATAGAGTAAATAAGTGGTTTC 59.012 37.037 0.00 0.00 0.00 2.78
195 196 7.769044 GGCAGATAGAGTAAATAAGTGGTTTCA 59.231 37.037 0.00 0.00 0.00 2.69
196 197 8.821894 GCAGATAGAGTAAATAAGTGGTTTCAG 58.178 37.037 0.00 0.00 0.00 3.02
197 198 9.319143 CAGATAGAGTAAATAAGTGGTTTCAGG 57.681 37.037 0.00 0.00 0.00 3.86
198 199 9.268282 AGATAGAGTAAATAAGTGGTTTCAGGA 57.732 33.333 0.00 0.00 0.00 3.86
199 200 9.535878 GATAGAGTAAATAAGTGGTTTCAGGAG 57.464 37.037 0.00 0.00 0.00 3.69
200 201 7.554959 AGAGTAAATAAGTGGTTTCAGGAGA 57.445 36.000 0.00 0.00 0.00 3.71
201 202 7.616313 AGAGTAAATAAGTGGTTTCAGGAGAG 58.384 38.462 0.00 0.00 0.00 3.20
202 203 7.235812 AGAGTAAATAAGTGGTTTCAGGAGAGT 59.764 37.037 0.00 0.00 0.00 3.24
203 204 7.387643 AGTAAATAAGTGGTTTCAGGAGAGTC 58.612 38.462 0.00 0.00 0.00 3.36
204 205 4.828072 ATAAGTGGTTTCAGGAGAGTCC 57.172 45.455 0.00 0.00 36.58 3.85
205 206 2.103153 AGTGGTTTCAGGAGAGTCCA 57.897 50.000 0.00 0.00 39.61 4.02
206 207 2.408565 AGTGGTTTCAGGAGAGTCCAA 58.591 47.619 0.00 0.00 39.61 3.53
207 208 2.777692 AGTGGTTTCAGGAGAGTCCAAA 59.222 45.455 0.00 0.00 39.61 3.28
208 209 3.202151 AGTGGTTTCAGGAGAGTCCAAAA 59.798 43.478 0.00 0.00 39.61 2.44
209 210 3.315470 GTGGTTTCAGGAGAGTCCAAAAC 59.685 47.826 12.29 12.29 40.62 2.43
210 211 3.202151 TGGTTTCAGGAGAGTCCAAAACT 59.798 43.478 16.92 0.00 40.88 2.66
211 212 4.207955 GGTTTCAGGAGAGTCCAAAACTT 58.792 43.478 16.92 0.00 40.88 2.66
212 213 4.276183 GGTTTCAGGAGAGTCCAAAACTTC 59.724 45.833 16.92 5.12 40.88 3.01
213 214 5.126779 GTTTCAGGAGAGTCCAAAACTTCT 58.873 41.667 12.98 0.00 39.41 2.85
214 215 5.373812 TTCAGGAGAGTCCAAAACTTCTT 57.626 39.130 0.00 0.00 39.61 2.52
215 216 4.708177 TCAGGAGAGTCCAAAACTTCTTG 58.292 43.478 0.00 0.00 39.61 3.02
216 217 4.408921 TCAGGAGAGTCCAAAACTTCTTGA 59.591 41.667 0.00 0.00 39.61 3.02
217 218 5.104527 TCAGGAGAGTCCAAAACTTCTTGAA 60.105 40.000 0.00 0.00 39.61 2.69
218 219 5.590259 CAGGAGAGTCCAAAACTTCTTGAAA 59.410 40.000 0.00 0.00 39.61 2.69
219 220 6.095440 CAGGAGAGTCCAAAACTTCTTGAAAA 59.905 38.462 0.00 0.00 39.61 2.29
220 221 6.663523 AGGAGAGTCCAAAACTTCTTGAAAAA 59.336 34.615 0.00 0.00 39.61 1.94
221 222 6.752351 GGAGAGTCCAAAACTTCTTGAAAAAC 59.248 38.462 0.00 0.00 38.74 2.43
222 223 7.227049 AGAGTCCAAAACTTCTTGAAAAACA 57.773 32.000 0.00 0.00 38.74 2.83
223 224 7.666623 AGAGTCCAAAACTTCTTGAAAAACAA 58.333 30.769 0.00 0.00 38.74 2.83
224 225 7.814587 AGAGTCCAAAACTTCTTGAAAAACAAG 59.185 33.333 0.00 0.00 46.36 3.16
237 238 7.765695 TTGAAAAACAAGATAGAGAAGCCAT 57.234 32.000 0.00 0.00 34.20 4.40
238 239 7.383102 TGAAAAACAAGATAGAGAAGCCATC 57.617 36.000 0.00 0.00 0.00 3.51
239 240 7.170965 TGAAAAACAAGATAGAGAAGCCATCT 58.829 34.615 0.00 0.00 42.61 2.90
240 241 6.998968 AAAACAAGATAGAGAAGCCATCTG 57.001 37.500 0.00 0.00 38.96 2.90
241 242 4.686191 ACAAGATAGAGAAGCCATCTGG 57.314 45.455 0.00 0.00 38.96 3.86
254 255 3.811702 TCTGGCCCCAGAGTTGAG 58.188 61.111 12.86 0.00 46.80 3.02
255 256 1.152030 TCTGGCCCCAGAGTTGAGT 60.152 57.895 12.86 0.00 46.80 3.41
256 257 0.768221 TCTGGCCCCAGAGTTGAGTT 60.768 55.000 12.86 0.00 46.80 3.01
257 258 0.607489 CTGGCCCCAGAGTTGAGTTG 60.607 60.000 8.67 0.00 46.30 3.16
258 259 1.303643 GGCCCCAGAGTTGAGTTGG 60.304 63.158 0.00 0.00 0.00 3.77
259 260 1.761174 GCCCCAGAGTTGAGTTGGA 59.239 57.895 0.00 0.00 33.76 3.53
260 261 0.329596 GCCCCAGAGTTGAGTTGGAT 59.670 55.000 0.00 0.00 33.76 3.41
261 262 1.272147 GCCCCAGAGTTGAGTTGGATT 60.272 52.381 0.00 0.00 33.76 3.01
262 263 2.819348 GCCCCAGAGTTGAGTTGGATTT 60.819 50.000 0.00 0.00 33.76 2.17
263 264 3.561313 GCCCCAGAGTTGAGTTGGATTTA 60.561 47.826 0.00 0.00 33.76 1.40
264 265 4.265073 CCCCAGAGTTGAGTTGGATTTAG 58.735 47.826 0.00 0.00 33.76 1.85
265 266 4.019321 CCCCAGAGTTGAGTTGGATTTAGA 60.019 45.833 0.00 0.00 33.76 2.10
266 267 4.938226 CCCAGAGTTGAGTTGGATTTAGAC 59.062 45.833 0.00 0.00 33.76 2.59
267 268 4.627467 CCAGAGTTGAGTTGGATTTAGACG 59.373 45.833 0.00 0.00 33.76 4.18
268 269 5.470368 CAGAGTTGAGTTGGATTTAGACGA 58.530 41.667 0.00 0.00 0.00 4.20
269 270 5.574830 CAGAGTTGAGTTGGATTTAGACGAG 59.425 44.000 0.00 0.00 0.00 4.18
270 271 5.477291 AGAGTTGAGTTGGATTTAGACGAGA 59.523 40.000 0.00 0.00 0.00 4.04
271 272 6.015350 AGAGTTGAGTTGGATTTAGACGAGAA 60.015 38.462 0.00 0.00 0.00 2.87
272 273 6.159988 AGTTGAGTTGGATTTAGACGAGAAG 58.840 40.000 0.00 0.00 0.00 2.85
273 274 5.977489 TGAGTTGGATTTAGACGAGAAGA 57.023 39.130 0.00 0.00 0.00 2.87
274 275 6.531503 TGAGTTGGATTTAGACGAGAAGAT 57.468 37.500 0.00 0.00 0.00 2.40
275 276 6.936279 TGAGTTGGATTTAGACGAGAAGATT 58.064 36.000 0.00 0.00 0.00 2.40
276 277 8.063200 TGAGTTGGATTTAGACGAGAAGATTA 57.937 34.615 0.00 0.00 0.00 1.75
277 278 7.974501 TGAGTTGGATTTAGACGAGAAGATTAC 59.025 37.037 0.00 0.00 0.00 1.89
278 279 7.266400 AGTTGGATTTAGACGAGAAGATTACC 58.734 38.462 0.00 0.00 0.00 2.85
279 280 5.828747 TGGATTTAGACGAGAAGATTACCG 58.171 41.667 0.00 0.00 0.00 4.02
280 281 4.680567 GGATTTAGACGAGAAGATTACCGC 59.319 45.833 0.00 0.00 0.00 5.68
281 282 4.707030 TTTAGACGAGAAGATTACCGCA 57.293 40.909 0.00 0.00 0.00 5.69
282 283 4.913335 TTAGACGAGAAGATTACCGCAT 57.087 40.909 0.00 0.00 0.00 4.73
283 284 3.085443 AGACGAGAAGATTACCGCATG 57.915 47.619 0.00 0.00 0.00 4.06
284 285 2.688446 AGACGAGAAGATTACCGCATGA 59.312 45.455 0.00 0.00 0.00 3.07
285 286 3.130516 AGACGAGAAGATTACCGCATGAA 59.869 43.478 0.00 0.00 0.00 2.57
286 287 4.051922 GACGAGAAGATTACCGCATGAAT 58.948 43.478 0.00 0.00 0.00 2.57
287 288 4.051922 ACGAGAAGATTACCGCATGAATC 58.948 43.478 0.00 0.00 33.11 2.52
288 289 4.202161 ACGAGAAGATTACCGCATGAATCT 60.202 41.667 0.00 0.00 42.83 2.40
289 290 4.384247 CGAGAAGATTACCGCATGAATCTC 59.616 45.833 7.59 0.00 40.68 2.75
290 291 4.636249 AGAAGATTACCGCATGAATCTCC 58.364 43.478 7.59 0.00 40.68 3.71
291 292 4.346418 AGAAGATTACCGCATGAATCTCCT 59.654 41.667 7.59 0.00 40.68 3.69
292 293 4.264460 AGATTACCGCATGAATCTCCTC 57.736 45.455 0.00 0.00 37.80 3.71
293 294 3.643320 AGATTACCGCATGAATCTCCTCA 59.357 43.478 0.00 0.00 37.80 3.86
294 295 4.285517 AGATTACCGCATGAATCTCCTCAT 59.714 41.667 0.00 0.00 37.80 2.90
300 301 3.851458 CATGAATCTCCTCATGGGACA 57.149 47.619 0.00 0.00 46.00 4.02
314 315 1.133136 TGGGACAGAGGGGTAGATAGC 60.133 57.143 0.00 0.00 0.00 2.97
315 316 1.133136 GGGACAGAGGGGTAGATAGCA 60.133 57.143 0.00 0.00 0.00 3.49
316 317 2.243810 GGACAGAGGGGTAGATAGCAG 58.756 57.143 0.00 0.00 0.00 4.24
317 318 2.425102 GGACAGAGGGGTAGATAGCAGT 60.425 54.545 0.00 0.00 0.00 4.40
318 319 3.301274 GACAGAGGGGTAGATAGCAGTT 58.699 50.000 0.00 0.00 0.00 3.16
319 320 3.301274 ACAGAGGGGTAGATAGCAGTTC 58.699 50.000 0.00 0.00 0.00 3.01
320 321 2.630580 CAGAGGGGTAGATAGCAGTTCC 59.369 54.545 0.00 0.00 0.00 3.62
321 322 2.247635 AGAGGGGTAGATAGCAGTTCCA 59.752 50.000 0.00 0.00 0.00 3.53
322 323 3.116551 AGAGGGGTAGATAGCAGTTCCAT 60.117 47.826 0.00 0.00 0.00 3.41
323 324 2.975489 AGGGGTAGATAGCAGTTCCATG 59.025 50.000 0.00 0.00 0.00 3.66
324 325 2.706190 GGGGTAGATAGCAGTTCCATGT 59.294 50.000 0.00 0.00 0.00 3.21
325 326 3.244249 GGGGTAGATAGCAGTTCCATGTC 60.244 52.174 0.00 0.00 0.00 3.06
326 327 3.388024 GGGTAGATAGCAGTTCCATGTCA 59.612 47.826 0.00 0.00 0.00 3.58
327 328 4.502259 GGGTAGATAGCAGTTCCATGTCAG 60.502 50.000 0.00 0.00 0.00 3.51
328 329 3.191078 AGATAGCAGTTCCATGTCAGC 57.809 47.619 0.00 0.00 0.00 4.26
329 330 2.770802 AGATAGCAGTTCCATGTCAGCT 59.229 45.455 0.00 0.00 36.20 4.24
330 331 2.680312 TAGCAGTTCCATGTCAGCTC 57.320 50.000 0.00 0.00 33.83 4.09
331 332 0.390866 AGCAGTTCCATGTCAGCTCG 60.391 55.000 0.00 0.00 0.00 5.03
332 333 1.364626 GCAGTTCCATGTCAGCTCGG 61.365 60.000 0.00 0.00 0.00 4.63
333 334 0.742281 CAGTTCCATGTCAGCTCGGG 60.742 60.000 0.00 0.00 0.00 5.14
334 335 0.904865 AGTTCCATGTCAGCTCGGGA 60.905 55.000 0.00 0.00 0.00 5.14
335 336 0.460987 GTTCCATGTCAGCTCGGGAG 60.461 60.000 0.00 0.00 0.00 4.30
336 337 0.614697 TTCCATGTCAGCTCGGGAGA 60.615 55.000 0.00 0.00 37.31 3.71
337 338 0.397675 TCCATGTCAGCTCGGGAGAT 60.398 55.000 0.00 0.00 38.80 2.75
338 339 0.033228 CCATGTCAGCTCGGGAGATC 59.967 60.000 0.00 0.00 38.80 2.75
339 340 0.033228 CATGTCAGCTCGGGAGATCC 59.967 60.000 0.00 0.00 38.80 3.36
361 362 2.124695 GGACGGGTCCCAAGCATC 60.125 66.667 9.12 0.00 43.94 3.91
362 363 2.511600 GACGGGTCCCAAGCATCG 60.512 66.667 9.12 0.00 0.00 3.84
363 364 4.096003 ACGGGTCCCAAGCATCGG 62.096 66.667 9.12 0.00 0.00 4.18
364 365 3.781307 CGGGTCCCAAGCATCGGA 61.781 66.667 9.12 0.00 0.00 4.55
365 366 2.674754 GGGTCCCAAGCATCGGAA 59.325 61.111 1.78 0.00 0.00 4.30
366 367 1.001393 GGGTCCCAAGCATCGGAAA 60.001 57.895 1.78 0.00 0.00 3.13
367 368 0.610785 GGGTCCCAAGCATCGGAAAA 60.611 55.000 1.78 0.00 0.00 2.29
368 369 0.811281 GGTCCCAAGCATCGGAAAAG 59.189 55.000 0.00 0.00 0.00 2.27
369 370 1.613255 GGTCCCAAGCATCGGAAAAGA 60.613 52.381 0.00 0.00 0.00 2.52
370 371 2.159382 GTCCCAAGCATCGGAAAAGAA 58.841 47.619 0.00 0.00 0.00 2.52
371 372 2.162408 GTCCCAAGCATCGGAAAAGAAG 59.838 50.000 0.00 0.00 0.00 2.85
372 373 1.135286 CCCAAGCATCGGAAAAGAAGC 60.135 52.381 0.00 0.00 35.33 3.86
373 374 1.815003 CCAAGCATCGGAAAAGAAGCT 59.185 47.619 0.00 0.00 45.62 3.74
374 375 3.009723 CCAAGCATCGGAAAAGAAGCTA 58.990 45.455 0.00 0.00 43.32 3.32
375 376 3.440173 CCAAGCATCGGAAAAGAAGCTAA 59.560 43.478 0.00 0.00 43.32 3.09
376 377 4.082787 CCAAGCATCGGAAAAGAAGCTAAA 60.083 41.667 0.00 0.00 43.32 1.85
377 378 4.686839 AGCATCGGAAAAGAAGCTAAAC 57.313 40.909 0.00 0.00 42.46 2.01
378 379 3.440522 AGCATCGGAAAAGAAGCTAAACC 59.559 43.478 0.00 0.00 42.46 3.27
379 380 3.427638 GCATCGGAAAAGAAGCTAAACCC 60.428 47.826 0.00 0.00 32.71 4.11
380 381 2.419667 TCGGAAAAGAAGCTAAACCCG 58.580 47.619 0.00 0.00 37.29 5.28
381 382 1.467342 CGGAAAAGAAGCTAAACCCGG 59.533 52.381 0.00 0.00 32.84 5.73
382 383 1.816835 GGAAAAGAAGCTAAACCCGGG 59.183 52.381 22.25 22.25 0.00 5.73
383 384 1.816835 GAAAAGAAGCTAAACCCGGGG 59.183 52.381 27.92 12.73 0.00 5.73
384 385 0.039180 AAAGAAGCTAAACCCGGGGG 59.961 55.000 27.92 12.92 42.03 5.40
385 386 0.843343 AAGAAGCTAAACCCGGGGGA 60.843 55.000 27.92 8.40 38.96 4.81
386 387 1.223763 GAAGCTAAACCCGGGGGAG 59.776 63.158 27.92 19.25 38.96 4.30
387 388 2.266816 GAAGCTAAACCCGGGGGAGG 62.267 65.000 27.92 13.31 38.96 4.30
409 410 3.349927 GGGTGAGCCCGTAAAATTAAGT 58.650 45.455 0.00 0.00 46.51 2.24
410 411 3.760151 GGGTGAGCCCGTAAAATTAAGTT 59.240 43.478 0.00 0.00 46.51 2.66
411 412 4.943093 GGGTGAGCCCGTAAAATTAAGTTA 59.057 41.667 0.00 0.00 46.51 2.24
440 441 4.935578 TCTTCCTATCCAGAGTCTCACAA 58.064 43.478 1.94 0.00 0.00 3.33
443 444 4.935578 TCCTATCCAGAGTCTCACAAGAA 58.064 43.478 1.94 0.00 31.93 2.52
444 445 4.952957 TCCTATCCAGAGTCTCACAAGAAG 59.047 45.833 1.94 0.00 31.93 2.85
445 446 3.608316 ATCCAGAGTCTCACAAGAAGC 57.392 47.619 1.94 0.00 31.93 3.86
446 447 1.620819 TCCAGAGTCTCACAAGAAGCC 59.379 52.381 1.94 0.00 31.93 4.35
447 448 1.345741 CCAGAGTCTCACAAGAAGCCA 59.654 52.381 1.94 0.00 31.93 4.75
448 449 2.411904 CAGAGTCTCACAAGAAGCCAC 58.588 52.381 1.94 0.00 31.93 5.01
449 450 1.000283 AGAGTCTCACAAGAAGCCACG 60.000 52.381 1.94 0.00 31.93 4.94
452 453 0.319900 TCTCACAAGAAGCCACGAGC 60.320 55.000 0.00 0.00 44.25 5.03
463 469 1.665916 CCACGAGCACACCTCACTG 60.666 63.158 0.00 0.00 40.78 3.66
475 481 4.580167 CACACCTCACTGGAAAATTCAAGA 59.420 41.667 4.57 0.00 39.71 3.02
476 482 5.067674 CACACCTCACTGGAAAATTCAAGAA 59.932 40.000 4.57 0.00 39.71 2.52
507 513 5.424757 AGTGAGCTATACAAAATAACGCCA 58.575 37.500 3.70 0.00 0.00 5.69
508 514 5.293569 AGTGAGCTATACAAAATAACGCCAC 59.706 40.000 3.70 0.00 0.00 5.01
509 515 4.573201 TGAGCTATACAAAATAACGCCACC 59.427 41.667 0.00 0.00 0.00 4.61
581 587 8.279103 GGATTTTGTTAGCGAGATAATTCTCTG 58.721 37.037 0.00 0.00 45.30 3.35
583 589 4.621991 TGTTAGCGAGATAATTCTCTGCC 58.378 43.478 0.00 0.00 45.30 4.85
587 593 4.775236 AGCGAGATAATTCTCTGCCTTTT 58.225 39.130 0.00 0.00 45.30 2.27
589 595 6.349300 AGCGAGATAATTCTCTGCCTTTTTA 58.651 36.000 0.00 0.00 45.30 1.52
590 596 6.995091 AGCGAGATAATTCTCTGCCTTTTTAT 59.005 34.615 0.00 0.00 45.30 1.40
591 597 8.150945 AGCGAGATAATTCTCTGCCTTTTTATA 58.849 33.333 0.00 0.00 45.30 0.98
592 598 8.224437 GCGAGATAATTCTCTGCCTTTTTATAC 58.776 37.037 0.00 0.00 45.30 1.47
770 1027 1.098050 GCTCCCATGCCACTAAACAG 58.902 55.000 0.00 0.00 0.00 3.16
771 1028 1.614317 GCTCCCATGCCACTAAACAGT 60.614 52.381 0.00 0.00 0.00 3.55
772 1029 2.355716 GCTCCCATGCCACTAAACAGTA 60.356 50.000 0.00 0.00 0.00 2.74
773 1030 3.872240 GCTCCCATGCCACTAAACAGTAA 60.872 47.826 0.00 0.00 0.00 2.24
774 1031 4.331968 CTCCCATGCCACTAAACAGTAAA 58.668 43.478 0.00 0.00 0.00 2.01
775 1032 4.076394 TCCCATGCCACTAAACAGTAAAC 58.924 43.478 0.00 0.00 0.00 2.01
776 1033 3.823873 CCCATGCCACTAAACAGTAAACA 59.176 43.478 0.00 0.00 0.00 2.83
811 1076 7.383102 TCTGAAGATCTTGTTTAGGCATTTC 57.617 36.000 14.00 0.00 0.00 2.17
870 1140 6.688637 CCATATGGTATATCACAATGGCAG 57.311 41.667 14.09 0.00 31.24 4.85
871 1141 6.182627 CCATATGGTATATCACAATGGCAGT 58.817 40.000 14.09 0.00 31.24 4.40
884 1154 3.488090 GCAGTAAGCACCGCCGTC 61.488 66.667 0.00 0.00 44.79 4.79
885 1155 2.813908 CAGTAAGCACCGCCGTCC 60.814 66.667 0.00 0.00 0.00 4.79
886 1156 2.995574 AGTAAGCACCGCCGTCCT 60.996 61.111 0.00 0.00 0.00 3.85
887 1157 2.047560 GTAAGCACCGCCGTCCTT 60.048 61.111 0.00 0.00 0.00 3.36
888 1158 2.047655 TAAGCACCGCCGTCCTTG 60.048 61.111 0.00 0.00 0.00 3.61
889 1159 2.575893 TAAGCACCGCCGTCCTTGA 61.576 57.895 0.00 0.00 0.00 3.02
890 1160 2.775032 TAAGCACCGCCGTCCTTGAC 62.775 60.000 0.00 0.00 0.00 3.18
928 1198 2.676748 TGCCAAACTTCCATGGAAACT 58.323 42.857 26.87 14.50 39.12 2.66
930 1200 4.219115 TGCCAAACTTCCATGGAAACTAA 58.781 39.130 26.87 5.75 39.12 2.24
983 1274 1.734465 CAAACCAACGAGCATCTCTCC 59.266 52.381 0.00 0.00 38.62 3.71
1017 1308 1.134487 AATGCGTTCCATTGCGACG 59.866 52.632 0.00 0.00 42.44 5.12
1138 1432 3.159984 GCGTCAGCAACTTCTCCG 58.840 61.111 0.00 0.00 44.35 4.63
1149 1443 1.296392 CTTCTCCGTGCCCACATCA 59.704 57.895 0.00 0.00 0.00 3.07
1447 3788 4.189188 CCGAATCGGGAGCGACGT 62.189 66.667 14.91 0.00 44.15 4.34
1491 3832 1.099879 GGCGGTCGAGCTACTCCTTA 61.100 60.000 13.48 0.00 37.29 2.69
1791 4132 2.184830 CGGTCCGGTCGAGCTCATA 61.185 63.158 15.40 0.00 36.81 2.15
1798 4139 3.606662 TCGAGCTCATAGCCGGGC 61.607 66.667 12.11 12.11 43.77 6.13
1917 4258 0.535102 CCTTCACCGGTCAAGTGCTT 60.535 55.000 17.61 0.00 35.14 3.91
1935 4276 0.040514 TTGCGTCAAAAGACCATGCG 60.041 50.000 0.00 0.00 0.00 4.73
1983 4324 4.496670 CTAGGTTTGACCGAGCGG 57.503 61.111 7.48 7.48 44.90 5.52
2120 4461 2.557059 TACGTGCAGGCACCGATCTG 62.557 60.000 17.92 6.07 43.49 2.90
2277 4618 1.878522 CAGCATCCAGTACGGCGTC 60.879 63.158 19.21 8.74 33.14 5.19
2279 4620 1.878522 GCATCCAGTACGGCGTCAG 60.879 63.158 19.21 7.64 33.14 3.51
2400 4741 1.063174 GCGTACGTGAACTACCTCGAT 59.937 52.381 17.90 0.00 0.00 3.59
2429 4770 3.712655 CGTGAACAACTGGACGCA 58.287 55.556 0.00 0.00 0.00 5.24
2666 5007 9.314321 GGAGATATGTATACCCAATAACGAATG 57.686 37.037 0.00 0.00 0.00 2.67
2707 5052 8.407832 TGACATGTCATGCTTCCATTATTTTAG 58.592 33.333 24.56 0.00 34.14 1.85
2708 5053 7.719483 ACATGTCATGCTTCCATTATTTTAGG 58.281 34.615 12.91 0.00 0.00 2.69
2709 5054 7.342799 ACATGTCATGCTTCCATTATTTTAGGT 59.657 33.333 12.91 0.00 0.00 3.08
2738 5083 2.289444 CCTAAGTGGTGCTTCGGAAAGA 60.289 50.000 0.00 0.00 41.18 2.52
2751 5096 2.509548 TCGGAAAGAATGATGGATGGGT 59.490 45.455 0.00 0.00 0.00 4.51
2754 5099 4.477249 GGAAAGAATGATGGATGGGTGAT 58.523 43.478 0.00 0.00 0.00 3.06
2767 5113 4.714308 GGATGGGTGATTTTGGTGGATAAA 59.286 41.667 0.00 0.00 0.00 1.40
2780 5126 1.557371 TGGATAAATGGCTCGGTGACA 59.443 47.619 0.00 0.00 38.56 3.58
2803 5149 1.602311 CAGAGTTTGCTGCCAAGAGT 58.398 50.000 0.00 0.00 31.52 3.24
2806 5152 2.370189 AGAGTTTGCTGCCAAGAGTAGT 59.630 45.455 0.00 0.00 31.52 2.73
2826 5172 0.390124 AAGAACCGTGCTAACCGTGA 59.610 50.000 0.00 0.00 0.00 4.35
2911 5289 8.989653 TTTTTCTTCTTTTTACCGTCATGTTT 57.010 26.923 0.00 0.00 0.00 2.83
2982 5360 0.534412 CCGCTCTCAGACATGGAGTT 59.466 55.000 0.00 0.00 34.04 3.01
3020 5398 1.661341 GCAGAGTGATCGCAAGGAAT 58.339 50.000 9.33 0.00 38.47 3.01
3110 5500 2.801631 CCTGGTCCGGATGCTCCTC 61.802 68.421 7.81 0.00 33.30 3.71
3121 5511 1.532604 ATGCTCCTCACGTCGTCCAA 61.533 55.000 0.00 0.00 0.00 3.53
3213 5603 3.307339 GGCTTGATCACTCCTTCTGTCTT 60.307 47.826 0.00 0.00 0.00 3.01
3227 5617 2.061773 CTGTCTTCTACACACGGCTTG 58.938 52.381 0.00 0.00 33.45 4.01
3296 5686 4.552365 TAGCCCGCCAGCATGCTC 62.552 66.667 19.68 6.80 35.34 4.26
3329 5724 6.712276 TCCCCTTATCTTCTTTCTTTCTCAC 58.288 40.000 0.00 0.00 0.00 3.51
3334 5729 9.500785 CCTTATCTTCTTTCTTTCTCACTTTCT 57.499 33.333 0.00 0.00 0.00 2.52
3337 5732 7.778470 TCTTCTTTCTTTCTCACTTTCTCAC 57.222 36.000 0.00 0.00 0.00 3.51
3338 5733 7.560368 TCTTCTTTCTTTCTCACTTTCTCACT 58.440 34.615 0.00 0.00 0.00 3.41
3339 5734 8.043710 TCTTCTTTCTTTCTCACTTTCTCACTT 58.956 33.333 0.00 0.00 0.00 3.16
3340 5735 8.567285 TTCTTTCTTTCTCACTTTCTCACTTT 57.433 30.769 0.00 0.00 0.00 2.66
3341 5736 8.202745 TCTTTCTTTCTCACTTTCTCACTTTC 57.797 34.615 0.00 0.00 0.00 2.62
3342 5737 8.043710 TCTTTCTTTCTCACTTTCTCACTTTCT 58.956 33.333 0.00 0.00 0.00 2.52
3369 5764 2.529780 TTTTCAGCATTGCCCACTTG 57.470 45.000 4.70 0.00 0.00 3.16
3426 5821 5.344743 TTGTCGAGCTTAGGAATCTCAAT 57.655 39.130 0.00 0.00 0.00 2.57
3471 5866 5.539955 AGTGAAGGCAAACAAGGATTACAAT 59.460 36.000 0.00 0.00 0.00 2.71
3486 5881 2.696989 ACAATCGTCAGATGATGGCA 57.303 45.000 5.85 0.00 37.14 4.92
3530 5926 8.146412 AGAATCAAGCTAAAATTTGCACTTTCT 58.854 29.630 3.62 3.85 0.00 2.52
3547 5943 6.723282 CACTTTCTTTTCTTCTGACCTTCTG 58.277 40.000 0.00 0.00 0.00 3.02
3548 5944 6.540189 CACTTTCTTTTCTTCTGACCTTCTGA 59.460 38.462 0.00 0.00 0.00 3.27
3564 5960 5.010012 ACCTTCTGATTTGCTTGGTTAACTG 59.990 40.000 5.42 0.00 0.00 3.16
3590 5986 2.505557 GCAATGCTGGCGTCTTGC 60.506 61.111 0.00 10.02 45.38 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.806949 TGCCACTAAACTTTCTCCCAT 57.193 42.857 0.00 0.00 0.00 4.00
1 2 3.586470 TTGCCACTAAACTTTCTCCCA 57.414 42.857 0.00 0.00 0.00 4.37
2 3 4.809673 CATTTGCCACTAAACTTTCTCCC 58.190 43.478 0.00 0.00 0.00 4.30
3 4 4.021981 AGCATTTGCCACTAAACTTTCTCC 60.022 41.667 0.00 0.00 43.38 3.71
4 5 5.126396 AGCATTTGCCACTAAACTTTCTC 57.874 39.130 0.00 0.00 43.38 2.87
5 6 5.535753 AAGCATTTGCCACTAAACTTTCT 57.464 34.783 0.00 0.00 43.38 2.52
20 21 3.055891 CGAAATTCCCCTCCAAAGCATTT 60.056 43.478 0.00 0.00 40.26 2.32
21 22 2.497273 CGAAATTCCCCTCCAAAGCATT 59.503 45.455 0.00 0.00 0.00 3.56
22 23 2.102578 CGAAATTCCCCTCCAAAGCAT 58.897 47.619 0.00 0.00 0.00 3.79
23 24 1.544724 CGAAATTCCCCTCCAAAGCA 58.455 50.000 0.00 0.00 0.00 3.91
24 25 0.173481 GCGAAATTCCCCTCCAAAGC 59.827 55.000 0.00 0.00 0.00 3.51
25 26 1.544724 TGCGAAATTCCCCTCCAAAG 58.455 50.000 0.00 0.00 0.00 2.77
26 27 2.002505 TTGCGAAATTCCCCTCCAAA 57.997 45.000 0.00 0.00 0.00 3.28
27 28 2.230130 ATTGCGAAATTCCCCTCCAA 57.770 45.000 0.00 0.00 0.00 3.53
28 29 2.241176 ACTATTGCGAAATTCCCCTCCA 59.759 45.455 0.00 0.00 0.00 3.86
29 30 2.618709 CACTATTGCGAAATTCCCCTCC 59.381 50.000 0.00 0.00 0.00 4.30
30 31 3.279434 ACACTATTGCGAAATTCCCCTC 58.721 45.455 0.00 0.00 0.00 4.30
31 32 3.366052 ACACTATTGCGAAATTCCCCT 57.634 42.857 0.00 0.00 0.00 4.79
32 33 3.442273 TCAACACTATTGCGAAATTCCCC 59.558 43.478 0.00 0.00 0.00 4.81
33 34 4.695217 TCAACACTATTGCGAAATTCCC 57.305 40.909 0.00 0.00 0.00 3.97
34 35 5.879237 TGATCAACACTATTGCGAAATTCC 58.121 37.500 0.00 0.00 0.00 3.01
35 36 6.022251 CGTTGATCAACACTATTGCGAAATTC 60.022 38.462 32.06 5.25 41.20 2.17
36 37 5.794945 CGTTGATCAACACTATTGCGAAATT 59.205 36.000 32.06 0.00 41.20 1.82
37 38 5.323900 CGTTGATCAACACTATTGCGAAAT 58.676 37.500 32.06 0.00 41.20 2.17
38 39 4.707563 CGTTGATCAACACTATTGCGAAA 58.292 39.130 32.06 0.00 41.20 3.46
39 40 3.424302 GCGTTGATCAACACTATTGCGAA 60.424 43.478 32.06 0.00 41.20 4.70
40 41 2.093625 GCGTTGATCAACACTATTGCGA 59.906 45.455 32.06 0.00 41.20 5.10
41 42 2.094258 AGCGTTGATCAACACTATTGCG 59.906 45.455 32.06 19.41 41.20 4.85
42 43 3.747099 AGCGTTGATCAACACTATTGC 57.253 42.857 32.06 25.61 41.20 3.56
43 44 7.065894 GCTAATAGCGTTGATCAACACTATTG 58.934 38.462 40.42 33.86 46.99 1.90
45 46 5.696724 GGCTAATAGCGTTGATCAACACTAT 59.303 40.000 30.38 30.38 44.13 2.12
46 47 5.047847 GGCTAATAGCGTTGATCAACACTA 58.952 41.667 29.12 29.12 43.62 2.74
47 48 3.871594 GGCTAATAGCGTTGATCAACACT 59.128 43.478 32.06 29.56 43.62 3.55
48 49 3.871594 AGGCTAATAGCGTTGATCAACAC 59.128 43.478 32.06 25.01 43.62 3.32
49 50 4.137116 AGGCTAATAGCGTTGATCAACA 57.863 40.909 32.06 17.45 43.62 3.33
50 51 6.479001 TCTTTAGGCTAATAGCGTTGATCAAC 59.521 38.462 25.68 25.68 43.62 3.18
51 52 6.578944 TCTTTAGGCTAATAGCGTTGATCAA 58.421 36.000 12.87 3.38 43.62 2.57
52 53 6.156748 TCTTTAGGCTAATAGCGTTGATCA 57.843 37.500 12.87 0.00 43.62 2.92
53 54 5.635700 CCTCTTTAGGCTAATAGCGTTGATC 59.364 44.000 12.87 0.00 43.62 2.92
54 55 5.542779 CCTCTTTAGGCTAATAGCGTTGAT 58.457 41.667 12.87 0.00 43.62 2.57
55 56 4.945246 CCTCTTTAGGCTAATAGCGTTGA 58.055 43.478 12.87 8.34 43.62 3.18
68 69 2.168521 TGACCAGATTCGCCTCTTTAGG 59.831 50.000 0.00 0.00 46.76 2.69
69 70 3.452474 CTGACCAGATTCGCCTCTTTAG 58.548 50.000 0.00 0.00 0.00 1.85
70 71 2.418746 GCTGACCAGATTCGCCTCTTTA 60.419 50.000 0.47 0.00 0.00 1.85
71 72 1.677217 GCTGACCAGATTCGCCTCTTT 60.677 52.381 0.47 0.00 0.00 2.52
72 73 0.107945 GCTGACCAGATTCGCCTCTT 60.108 55.000 0.47 0.00 0.00 2.85
73 74 0.975040 AGCTGACCAGATTCGCCTCT 60.975 55.000 0.47 0.00 0.00 3.69
74 75 0.529555 GAGCTGACCAGATTCGCCTC 60.530 60.000 0.00 0.00 0.00 4.70
75 76 1.519719 GAGCTGACCAGATTCGCCT 59.480 57.895 0.00 0.00 0.00 5.52
76 77 1.522580 GGAGCTGACCAGATTCGCC 60.523 63.158 0.00 0.00 0.00 5.54
77 78 1.522580 GGGAGCTGACCAGATTCGC 60.523 63.158 0.00 2.87 0.00 4.70
78 79 0.539051 AAGGGAGCTGACCAGATTCG 59.461 55.000 6.80 0.00 0.00 3.34
79 80 1.556911 TCAAGGGAGCTGACCAGATTC 59.443 52.381 6.80 0.00 0.00 2.52
80 81 1.280421 GTCAAGGGAGCTGACCAGATT 59.720 52.381 6.80 0.00 37.77 2.40
81 82 0.908198 GTCAAGGGAGCTGACCAGAT 59.092 55.000 6.80 0.00 37.77 2.90
82 83 2.366469 GTCAAGGGAGCTGACCAGA 58.634 57.895 6.80 1.84 37.77 3.86
93 94 1.355720 ACTGATTCCCAAGGTCAAGGG 59.644 52.381 0.00 0.00 46.90 3.95
94 95 2.224867 ACACTGATTCCCAAGGTCAAGG 60.225 50.000 0.00 0.00 0.00 3.61
95 96 3.146104 ACACTGATTCCCAAGGTCAAG 57.854 47.619 0.00 0.00 0.00 3.02
96 97 3.593442 AACACTGATTCCCAAGGTCAA 57.407 42.857 0.00 0.00 0.00 3.18
97 98 4.715534 TTAACACTGATTCCCAAGGTCA 57.284 40.909 0.00 0.00 0.00 4.02
98 99 5.313712 TCTTTAACACTGATTCCCAAGGTC 58.686 41.667 0.00 0.00 0.00 3.85
99 100 5.319043 TCTTTAACACTGATTCCCAAGGT 57.681 39.130 0.00 0.00 0.00 3.50
100 101 5.770162 ACTTCTTTAACACTGATTCCCAAGG 59.230 40.000 0.00 0.00 0.00 3.61
101 102 6.263168 ACACTTCTTTAACACTGATTCCCAAG 59.737 38.462 0.00 0.00 0.00 3.61
102 103 6.126409 ACACTTCTTTAACACTGATTCCCAA 58.874 36.000 0.00 0.00 0.00 4.12
103 104 5.690865 ACACTTCTTTAACACTGATTCCCA 58.309 37.500 0.00 0.00 0.00 4.37
104 105 7.923414 ATACACTTCTTTAACACTGATTCCC 57.077 36.000 0.00 0.00 0.00 3.97
112 113 9.577003 CGTGTCTTAAATACACTTCTTTAACAC 57.423 33.333 15.17 0.00 44.05 3.32
113 114 9.531942 TCGTGTCTTAAATACACTTCTTTAACA 57.468 29.630 15.17 0.00 44.05 2.41
118 119 9.924650 ACTTATCGTGTCTTAAATACACTTCTT 57.075 29.630 15.17 4.30 44.05 2.52
119 120 9.570488 GACTTATCGTGTCTTAAATACACTTCT 57.430 33.333 15.17 5.89 44.05 2.85
120 121 8.805688 GGACTTATCGTGTCTTAAATACACTTC 58.194 37.037 15.17 5.62 44.05 3.01
121 122 8.308931 TGGACTTATCGTGTCTTAAATACACTT 58.691 33.333 15.17 8.00 44.05 3.16
122 123 7.758528 GTGGACTTATCGTGTCTTAAATACACT 59.241 37.037 15.17 4.40 44.05 3.55
123 124 7.758528 AGTGGACTTATCGTGTCTTAAATACAC 59.241 37.037 9.64 9.64 43.04 2.90
124 125 7.758076 CAGTGGACTTATCGTGTCTTAAATACA 59.242 37.037 0.00 0.00 35.04 2.29
125 126 7.758528 ACAGTGGACTTATCGTGTCTTAAATAC 59.241 37.037 0.00 0.00 35.04 1.89
126 127 7.833786 ACAGTGGACTTATCGTGTCTTAAATA 58.166 34.615 0.00 0.00 35.04 1.40
127 128 6.698380 ACAGTGGACTTATCGTGTCTTAAAT 58.302 36.000 0.00 0.00 35.04 1.40
128 129 6.092955 ACAGTGGACTTATCGTGTCTTAAA 57.907 37.500 0.00 0.00 35.04 1.52
129 130 5.717078 ACAGTGGACTTATCGTGTCTTAA 57.283 39.130 0.00 0.00 35.04 1.85
130 131 6.376299 ACATACAGTGGACTTATCGTGTCTTA 59.624 38.462 0.00 0.00 35.04 2.10
131 132 5.185249 ACATACAGTGGACTTATCGTGTCTT 59.815 40.000 0.00 0.00 35.04 3.01
132 133 4.705507 ACATACAGTGGACTTATCGTGTCT 59.294 41.667 0.00 0.00 35.04 3.41
133 134 4.995124 ACATACAGTGGACTTATCGTGTC 58.005 43.478 0.00 0.00 0.00 3.67
134 135 5.067413 CCTACATACAGTGGACTTATCGTGT 59.933 44.000 0.00 0.00 0.00 4.49
135 136 5.520632 CCTACATACAGTGGACTTATCGTG 58.479 45.833 0.00 0.00 0.00 4.35
136 137 4.037684 GCCTACATACAGTGGACTTATCGT 59.962 45.833 0.00 0.00 0.00 3.73
137 138 4.037565 TGCCTACATACAGTGGACTTATCG 59.962 45.833 0.00 0.00 0.00 2.92
138 139 5.302059 TCTGCCTACATACAGTGGACTTATC 59.698 44.000 0.00 0.00 35.37 1.75
139 140 5.208890 TCTGCCTACATACAGTGGACTTAT 58.791 41.667 0.00 0.00 35.37 1.73
140 141 4.606210 TCTGCCTACATACAGTGGACTTA 58.394 43.478 0.00 0.00 35.37 2.24
141 142 3.441101 TCTGCCTACATACAGTGGACTT 58.559 45.455 0.00 0.00 35.37 3.01
142 143 3.101643 TCTGCCTACATACAGTGGACT 57.898 47.619 0.00 0.00 35.37 3.85
143 144 3.887621 TTCTGCCTACATACAGTGGAC 57.112 47.619 0.00 0.00 35.37 4.02
144 145 3.055385 GGTTTCTGCCTACATACAGTGGA 60.055 47.826 0.00 0.00 35.37 4.02
145 146 3.270877 GGTTTCTGCCTACATACAGTGG 58.729 50.000 0.00 0.00 35.37 4.00
146 147 3.270877 GGGTTTCTGCCTACATACAGTG 58.729 50.000 0.00 0.00 35.37 3.66
147 148 2.910319 TGGGTTTCTGCCTACATACAGT 59.090 45.455 0.00 0.00 35.37 3.55
148 149 3.535561 CTGGGTTTCTGCCTACATACAG 58.464 50.000 0.00 0.00 35.15 2.74
149 150 2.238646 CCTGGGTTTCTGCCTACATACA 59.761 50.000 0.00 0.00 0.00 2.29
150 151 2.919228 CCTGGGTTTCTGCCTACATAC 58.081 52.381 0.00 0.00 0.00 2.39
151 152 1.211949 GCCTGGGTTTCTGCCTACATA 59.788 52.381 0.00 0.00 0.00 2.29
152 153 0.034089 GCCTGGGTTTCTGCCTACAT 60.034 55.000 0.00 0.00 0.00 2.29
153 154 1.378762 GCCTGGGTTTCTGCCTACA 59.621 57.895 0.00 0.00 0.00 2.74
154 155 0.678048 CTGCCTGGGTTTCTGCCTAC 60.678 60.000 0.00 0.00 0.00 3.18
155 156 0.840288 TCTGCCTGGGTTTCTGCCTA 60.840 55.000 0.00 0.00 0.00 3.93
156 157 1.504275 ATCTGCCTGGGTTTCTGCCT 61.504 55.000 0.00 0.00 0.00 4.75
157 158 0.255890 TATCTGCCTGGGTTTCTGCC 59.744 55.000 0.00 0.00 0.00 4.85
158 159 1.210478 TCTATCTGCCTGGGTTTCTGC 59.790 52.381 0.00 0.00 0.00 4.26
159 160 2.503356 ACTCTATCTGCCTGGGTTTCTG 59.497 50.000 0.00 0.00 0.00 3.02
160 161 2.839228 ACTCTATCTGCCTGGGTTTCT 58.161 47.619 0.00 0.00 0.00 2.52
161 162 4.755266 TTACTCTATCTGCCTGGGTTTC 57.245 45.455 0.00 0.00 0.00 2.78
162 163 5.717119 ATTTACTCTATCTGCCTGGGTTT 57.283 39.130 0.00 0.00 0.00 3.27
163 164 6.387220 ACTTATTTACTCTATCTGCCTGGGTT 59.613 38.462 0.00 0.00 0.00 4.11
164 165 5.905913 ACTTATTTACTCTATCTGCCTGGGT 59.094 40.000 0.00 0.00 0.00 4.51
165 166 6.226787 CACTTATTTACTCTATCTGCCTGGG 58.773 44.000 0.00 0.00 0.00 4.45
166 167 6.183361 ACCACTTATTTACTCTATCTGCCTGG 60.183 42.308 0.00 0.00 0.00 4.45
167 168 6.821388 ACCACTTATTTACTCTATCTGCCTG 58.179 40.000 0.00 0.00 0.00 4.85
168 169 7.439108 AACCACTTATTTACTCTATCTGCCT 57.561 36.000 0.00 0.00 0.00 4.75
169 170 7.769044 TGAAACCACTTATTTACTCTATCTGCC 59.231 37.037 0.00 0.00 0.00 4.85
170 171 8.718102 TGAAACCACTTATTTACTCTATCTGC 57.282 34.615 0.00 0.00 0.00 4.26
171 172 9.319143 CCTGAAACCACTTATTTACTCTATCTG 57.681 37.037 0.00 0.00 0.00 2.90
172 173 9.268282 TCCTGAAACCACTTATTTACTCTATCT 57.732 33.333 0.00 0.00 0.00 1.98
173 174 9.535878 CTCCTGAAACCACTTATTTACTCTATC 57.464 37.037 0.00 0.00 0.00 2.08
174 175 9.268282 TCTCCTGAAACCACTTATTTACTCTAT 57.732 33.333 0.00 0.00 0.00 1.98
175 176 8.660295 TCTCCTGAAACCACTTATTTACTCTA 57.340 34.615 0.00 0.00 0.00 2.43
176 177 7.235812 ACTCTCCTGAAACCACTTATTTACTCT 59.764 37.037 0.00 0.00 0.00 3.24
177 178 7.387643 ACTCTCCTGAAACCACTTATTTACTC 58.612 38.462 0.00 0.00 0.00 2.59
178 179 7.317722 ACTCTCCTGAAACCACTTATTTACT 57.682 36.000 0.00 0.00 0.00 2.24
179 180 6.594547 GGACTCTCCTGAAACCACTTATTTAC 59.405 42.308 0.00 0.00 32.53 2.01
180 181 6.271391 TGGACTCTCCTGAAACCACTTATTTA 59.729 38.462 0.00 0.00 37.46 1.40
181 182 5.073144 TGGACTCTCCTGAAACCACTTATTT 59.927 40.000 0.00 0.00 37.46 1.40
182 183 4.597507 TGGACTCTCCTGAAACCACTTATT 59.402 41.667 0.00 0.00 37.46 1.40
183 184 4.168101 TGGACTCTCCTGAAACCACTTAT 58.832 43.478 0.00 0.00 37.46 1.73
184 185 3.583228 TGGACTCTCCTGAAACCACTTA 58.417 45.455 0.00 0.00 37.46 2.24
185 186 2.408565 TGGACTCTCCTGAAACCACTT 58.591 47.619 0.00 0.00 37.46 3.16
186 187 2.103153 TGGACTCTCCTGAAACCACT 57.897 50.000 0.00 0.00 37.46 4.00
187 188 2.930826 TTGGACTCTCCTGAAACCAC 57.069 50.000 0.00 0.00 37.46 4.16
188 189 3.202151 AGTTTTGGACTCTCCTGAAACCA 59.798 43.478 12.96 0.00 40.65 3.67
189 190 3.821748 AGTTTTGGACTCTCCTGAAACC 58.178 45.455 12.96 0.00 40.65 3.27
190 191 5.126779 AGAAGTTTTGGACTCTCCTGAAAC 58.873 41.667 10.42 10.42 40.36 2.78
191 192 5.373812 AGAAGTTTTGGACTCTCCTGAAA 57.626 39.130 0.00 0.00 37.72 2.69
192 193 5.104527 TCAAGAAGTTTTGGACTCTCCTGAA 60.105 40.000 0.00 0.00 37.72 3.02
193 194 4.408921 TCAAGAAGTTTTGGACTCTCCTGA 59.591 41.667 0.00 0.00 37.72 3.86
194 195 4.708177 TCAAGAAGTTTTGGACTCTCCTG 58.292 43.478 0.00 0.00 37.72 3.86
195 196 5.373812 TTCAAGAAGTTTTGGACTCTCCT 57.626 39.130 0.00 0.00 37.72 3.69
196 197 6.451064 TTTTCAAGAAGTTTTGGACTCTCC 57.549 37.500 0.00 0.00 37.72 3.71
197 198 7.312899 TGTTTTTCAAGAAGTTTTGGACTCTC 58.687 34.615 0.00 0.00 37.72 3.20
198 199 7.227049 TGTTTTTCAAGAAGTTTTGGACTCT 57.773 32.000 0.00 0.00 37.72 3.24
199 200 7.883229 TTGTTTTTCAAGAAGTTTTGGACTC 57.117 32.000 0.00 0.00 37.72 3.36
213 214 7.667219 AGATGGCTTCTCTATCTTGTTTTTCAA 59.333 33.333 0.00 0.00 39.64 2.69
214 215 7.120285 CAGATGGCTTCTCTATCTTGTTTTTCA 59.880 37.037 0.00 0.00 40.52 2.69
215 216 7.414984 CCAGATGGCTTCTCTATCTTGTTTTTC 60.415 40.741 0.00 0.00 40.52 2.29
216 217 6.376581 CCAGATGGCTTCTCTATCTTGTTTTT 59.623 38.462 0.00 0.00 40.52 1.94
217 218 5.884792 CCAGATGGCTTCTCTATCTTGTTTT 59.115 40.000 0.00 0.00 40.52 2.43
218 219 5.435291 CCAGATGGCTTCTCTATCTTGTTT 58.565 41.667 0.00 0.00 40.52 2.83
219 220 5.033589 CCAGATGGCTTCTCTATCTTGTT 57.966 43.478 0.00 0.00 40.52 2.83
220 221 4.686191 CCAGATGGCTTCTCTATCTTGT 57.314 45.455 0.00 0.00 40.52 3.16
238 239 0.607489 CAACTCAACTCTGGGGCCAG 60.607 60.000 4.39 0.63 44.86 4.85
239 240 1.455849 CAACTCAACTCTGGGGCCA 59.544 57.895 4.39 0.00 0.00 5.36
240 241 1.303643 CCAACTCAACTCTGGGGCC 60.304 63.158 0.00 0.00 0.00 5.80
241 242 0.329596 ATCCAACTCAACTCTGGGGC 59.670 55.000 0.00 0.00 0.00 5.80
242 243 2.887151 AATCCAACTCAACTCTGGGG 57.113 50.000 0.00 0.00 0.00 4.96
243 244 4.938226 GTCTAAATCCAACTCAACTCTGGG 59.062 45.833 0.00 0.00 0.00 4.45
244 245 4.627467 CGTCTAAATCCAACTCAACTCTGG 59.373 45.833 0.00 0.00 0.00 3.86
245 246 5.470368 TCGTCTAAATCCAACTCAACTCTG 58.530 41.667 0.00 0.00 0.00 3.35
246 247 5.477291 TCTCGTCTAAATCCAACTCAACTCT 59.523 40.000 0.00 0.00 0.00 3.24
247 248 5.710984 TCTCGTCTAAATCCAACTCAACTC 58.289 41.667 0.00 0.00 0.00 3.01
248 249 5.723672 TCTCGTCTAAATCCAACTCAACT 57.276 39.130 0.00 0.00 0.00 3.16
249 250 6.157211 TCTTCTCGTCTAAATCCAACTCAAC 58.843 40.000 0.00 0.00 0.00 3.18
250 251 6.340962 TCTTCTCGTCTAAATCCAACTCAA 57.659 37.500 0.00 0.00 0.00 3.02
251 252 5.977489 TCTTCTCGTCTAAATCCAACTCA 57.023 39.130 0.00 0.00 0.00 3.41
252 253 7.435784 GGTAATCTTCTCGTCTAAATCCAACTC 59.564 40.741 0.00 0.00 0.00 3.01
253 254 7.266400 GGTAATCTTCTCGTCTAAATCCAACT 58.734 38.462 0.00 0.00 0.00 3.16
254 255 6.198591 CGGTAATCTTCTCGTCTAAATCCAAC 59.801 42.308 0.00 0.00 0.00 3.77
255 256 6.270815 CGGTAATCTTCTCGTCTAAATCCAA 58.729 40.000 0.00 0.00 0.00 3.53
256 257 5.735354 GCGGTAATCTTCTCGTCTAAATCCA 60.735 44.000 0.00 0.00 0.00 3.41
257 258 4.680567 GCGGTAATCTTCTCGTCTAAATCC 59.319 45.833 0.00 0.00 0.00 3.01
258 259 5.279384 TGCGGTAATCTTCTCGTCTAAATC 58.721 41.667 0.00 0.00 0.00 2.17
259 260 5.258456 TGCGGTAATCTTCTCGTCTAAAT 57.742 39.130 0.00 0.00 0.00 1.40
260 261 4.707030 TGCGGTAATCTTCTCGTCTAAA 57.293 40.909 0.00 0.00 0.00 1.85
261 262 4.337274 TCATGCGGTAATCTTCTCGTCTAA 59.663 41.667 0.00 0.00 0.00 2.10
262 263 3.881089 TCATGCGGTAATCTTCTCGTCTA 59.119 43.478 0.00 0.00 0.00 2.59
263 264 2.688446 TCATGCGGTAATCTTCTCGTCT 59.312 45.455 0.00 0.00 0.00 4.18
264 265 3.079960 TCATGCGGTAATCTTCTCGTC 57.920 47.619 0.00 0.00 0.00 4.20
265 266 3.520290 TTCATGCGGTAATCTTCTCGT 57.480 42.857 0.00 0.00 0.00 4.18
266 267 4.302455 AGATTCATGCGGTAATCTTCTCG 58.698 43.478 2.36 0.00 38.93 4.04
267 268 4.688413 GGAGATTCATGCGGTAATCTTCTC 59.312 45.833 8.35 0.00 41.40 2.87
268 269 4.346418 AGGAGATTCATGCGGTAATCTTCT 59.654 41.667 9.03 9.03 41.34 2.85
269 270 4.636249 AGGAGATTCATGCGGTAATCTTC 58.364 43.478 8.35 6.86 41.40 2.87
270 271 4.101585 TGAGGAGATTCATGCGGTAATCTT 59.898 41.667 8.35 0.00 41.40 2.40
271 272 3.643320 TGAGGAGATTCATGCGGTAATCT 59.357 43.478 7.00 7.00 43.44 2.40
272 273 3.995199 TGAGGAGATTCATGCGGTAATC 58.005 45.455 0.00 0.00 33.21 1.75
273 274 4.321718 CATGAGGAGATTCATGCGGTAAT 58.678 43.478 3.37 0.00 45.49 1.89
274 275 3.732212 CATGAGGAGATTCATGCGGTAA 58.268 45.455 3.37 0.00 45.49 2.85
275 276 3.391506 CATGAGGAGATTCATGCGGTA 57.608 47.619 3.37 0.00 45.49 4.02
276 277 2.251409 CATGAGGAGATTCATGCGGT 57.749 50.000 3.37 0.00 45.49 5.68
289 290 0.031111 TACCCCTCTGTCCCATGAGG 60.031 60.000 0.00 0.00 46.91 3.86
290 291 1.062886 TCTACCCCTCTGTCCCATGAG 60.063 57.143 0.00 0.00 0.00 2.90
291 292 1.015609 TCTACCCCTCTGTCCCATGA 58.984 55.000 0.00 0.00 0.00 3.07
292 293 2.109229 ATCTACCCCTCTGTCCCATG 57.891 55.000 0.00 0.00 0.00 3.66
293 294 2.493687 GCTATCTACCCCTCTGTCCCAT 60.494 54.545 0.00 0.00 0.00 4.00
294 295 1.133136 GCTATCTACCCCTCTGTCCCA 60.133 57.143 0.00 0.00 0.00 4.37
295 296 1.133136 TGCTATCTACCCCTCTGTCCC 60.133 57.143 0.00 0.00 0.00 4.46
296 297 2.243810 CTGCTATCTACCCCTCTGTCC 58.756 57.143 0.00 0.00 0.00 4.02
297 298 2.952116 ACTGCTATCTACCCCTCTGTC 58.048 52.381 0.00 0.00 0.00 3.51
298 299 3.301274 GAACTGCTATCTACCCCTCTGT 58.699 50.000 0.00 0.00 0.00 3.41
299 300 2.630580 GGAACTGCTATCTACCCCTCTG 59.369 54.545 0.00 0.00 0.00 3.35
300 301 2.247635 TGGAACTGCTATCTACCCCTCT 59.752 50.000 0.00 0.00 0.00 3.69
301 302 2.679082 TGGAACTGCTATCTACCCCTC 58.321 52.381 0.00 0.00 0.00 4.30
302 303 2.868964 TGGAACTGCTATCTACCCCT 57.131 50.000 0.00 0.00 0.00 4.79
303 304 2.706190 ACATGGAACTGCTATCTACCCC 59.294 50.000 0.00 0.00 0.00 4.95
304 305 3.388024 TGACATGGAACTGCTATCTACCC 59.612 47.826 0.00 0.00 0.00 3.69
305 306 4.626042 CTGACATGGAACTGCTATCTACC 58.374 47.826 0.00 0.00 0.00 3.18
306 307 4.054671 GCTGACATGGAACTGCTATCTAC 58.945 47.826 0.00 0.00 0.00 2.59
307 308 3.963374 AGCTGACATGGAACTGCTATCTA 59.037 43.478 15.20 0.00 38.96 1.98
308 309 2.770802 AGCTGACATGGAACTGCTATCT 59.229 45.455 15.20 0.00 38.96 1.98
309 310 3.129871 GAGCTGACATGGAACTGCTATC 58.870 50.000 16.18 6.66 40.32 2.08
310 311 2.482664 CGAGCTGACATGGAACTGCTAT 60.483 50.000 16.18 2.45 40.32 2.97
311 312 1.134995 CGAGCTGACATGGAACTGCTA 60.135 52.381 16.18 0.00 40.32 3.49
312 313 0.390866 CGAGCTGACATGGAACTGCT 60.391 55.000 16.16 16.16 42.23 4.24
313 314 1.364626 CCGAGCTGACATGGAACTGC 61.365 60.000 0.00 4.29 0.00 4.40
314 315 0.742281 CCCGAGCTGACATGGAACTG 60.742 60.000 0.00 0.00 0.00 3.16
315 316 0.904865 TCCCGAGCTGACATGGAACT 60.905 55.000 0.00 0.00 0.00 3.01
316 317 0.460987 CTCCCGAGCTGACATGGAAC 60.461 60.000 0.00 0.00 0.00 3.62
317 318 0.614697 TCTCCCGAGCTGACATGGAA 60.615 55.000 0.00 0.00 0.00 3.53
318 319 0.397675 ATCTCCCGAGCTGACATGGA 60.398 55.000 0.00 0.00 0.00 3.41
319 320 0.033228 GATCTCCCGAGCTGACATGG 59.967 60.000 0.00 0.00 0.00 3.66
320 321 0.033228 GGATCTCCCGAGCTGACATG 59.967 60.000 0.00 0.00 0.00 3.21
321 322 2.435418 GGATCTCCCGAGCTGACAT 58.565 57.895 0.00 0.00 0.00 3.06
322 323 3.941081 GGATCTCCCGAGCTGACA 58.059 61.111 0.00 0.00 0.00 3.58
331 332 3.917760 CGTCCCAGCGGATCTCCC 61.918 72.222 0.00 0.00 41.40 4.30
345 346 2.511600 CGATGCTTGGGACCCGTC 60.512 66.667 5.91 0.00 0.00 4.79
346 347 4.096003 CCGATGCTTGGGACCCGT 62.096 66.667 5.91 0.00 0.00 5.28
347 348 2.813226 TTTCCGATGCTTGGGACCCG 62.813 60.000 5.91 0.00 28.12 5.28
348 349 0.610785 TTTTCCGATGCTTGGGACCC 60.611 55.000 2.45 2.45 28.12 4.46
349 350 0.811281 CTTTTCCGATGCTTGGGACC 59.189 55.000 2.62 0.00 28.12 4.46
350 351 1.821216 TCTTTTCCGATGCTTGGGAC 58.179 50.000 2.62 0.00 28.12 4.46
351 352 2.436417 CTTCTTTTCCGATGCTTGGGA 58.564 47.619 0.00 0.00 0.00 4.37
352 353 1.135286 GCTTCTTTTCCGATGCTTGGG 60.135 52.381 0.00 0.00 32.95 4.12
353 354 1.815003 AGCTTCTTTTCCGATGCTTGG 59.185 47.619 0.00 0.00 40.28 3.61
354 355 4.685169 TTAGCTTCTTTTCCGATGCTTG 57.315 40.909 0.00 0.00 42.32 4.01
355 356 4.082733 GGTTTAGCTTCTTTTCCGATGCTT 60.083 41.667 0.00 0.00 42.32 3.91
356 357 3.440522 GGTTTAGCTTCTTTTCCGATGCT 59.559 43.478 0.00 6.47 43.90 3.79
357 358 3.427638 GGGTTTAGCTTCTTTTCCGATGC 60.428 47.826 0.00 0.00 35.12 3.91
358 359 3.181510 CGGGTTTAGCTTCTTTTCCGATG 60.182 47.826 0.00 0.00 38.64 3.84
359 360 3.007635 CGGGTTTAGCTTCTTTTCCGAT 58.992 45.455 0.00 0.00 38.64 4.18
360 361 2.419667 CGGGTTTAGCTTCTTTTCCGA 58.580 47.619 0.00 0.00 38.64 4.55
361 362 1.467342 CCGGGTTTAGCTTCTTTTCCG 59.533 52.381 0.00 0.00 36.43 4.30
362 363 1.816835 CCCGGGTTTAGCTTCTTTTCC 59.183 52.381 14.18 0.00 0.00 3.13
363 364 1.816835 CCCCGGGTTTAGCTTCTTTTC 59.183 52.381 21.85 0.00 0.00 2.29
364 365 1.549265 CCCCCGGGTTTAGCTTCTTTT 60.549 52.381 21.85 0.00 0.00 2.27
365 366 0.039180 CCCCCGGGTTTAGCTTCTTT 59.961 55.000 21.85 0.00 0.00 2.52
366 367 0.843343 TCCCCCGGGTTTAGCTTCTT 60.843 55.000 21.85 0.00 36.47 2.52
367 368 1.229723 TCCCCCGGGTTTAGCTTCT 60.230 57.895 21.85 0.00 36.47 2.85
368 369 1.223763 CTCCCCCGGGTTTAGCTTC 59.776 63.158 21.85 0.00 36.47 3.86
369 370 2.306384 CCTCCCCCGGGTTTAGCTT 61.306 63.158 21.85 0.00 36.47 3.74
370 371 2.691252 CCTCCCCCGGGTTTAGCT 60.691 66.667 21.85 0.00 36.47 3.32
371 372 3.805497 CCCTCCCCCGGGTTTAGC 61.805 72.222 21.85 0.00 39.51 3.09
372 373 3.094498 CCCCTCCCCCGGGTTTAG 61.094 72.222 21.85 13.24 43.06 1.85
373 374 4.764051 CCCCCTCCCCCGGGTTTA 62.764 72.222 21.85 2.73 43.06 2.01
389 390 6.459161 CCATAACTTAATTTTACGGGCTCACC 60.459 42.308 0.00 0.00 0.00 4.02
390 391 6.492254 CCATAACTTAATTTTACGGGCTCAC 58.508 40.000 0.00 0.00 0.00 3.51
391 392 5.066764 GCCATAACTTAATTTTACGGGCTCA 59.933 40.000 0.00 0.00 32.92 4.26
392 393 5.066764 TGCCATAACTTAATTTTACGGGCTC 59.933 40.000 15.46 0.00 35.07 4.70
393 394 4.951094 TGCCATAACTTAATTTTACGGGCT 59.049 37.500 15.46 0.00 35.07 5.19
394 395 5.251601 TGCCATAACTTAATTTTACGGGC 57.748 39.130 0.00 0.00 34.80 6.13
395 396 7.712797 AGATTGCCATAACTTAATTTTACGGG 58.287 34.615 0.00 0.00 0.00 5.28
396 397 9.233232 GAAGATTGCCATAACTTAATTTTACGG 57.767 33.333 0.00 0.00 0.00 4.02
397 398 9.233232 GGAAGATTGCCATAACTTAATTTTACG 57.767 33.333 0.00 0.00 0.00 3.18
402 403 9.301897 GGATAGGAAGATTGCCATAACTTAATT 57.698 33.333 0.00 0.00 0.00 1.40
403 404 8.448008 TGGATAGGAAGATTGCCATAACTTAAT 58.552 33.333 0.00 0.00 0.00 1.40
404 405 7.811282 TGGATAGGAAGATTGCCATAACTTAA 58.189 34.615 0.00 0.00 0.00 1.85
405 406 7.292356 TCTGGATAGGAAGATTGCCATAACTTA 59.708 37.037 0.00 0.00 0.00 2.24
406 407 6.101734 TCTGGATAGGAAGATTGCCATAACTT 59.898 38.462 0.00 0.00 0.00 2.66
407 408 5.608437 TCTGGATAGGAAGATTGCCATAACT 59.392 40.000 0.00 0.00 0.00 2.24
408 409 5.869579 TCTGGATAGGAAGATTGCCATAAC 58.130 41.667 0.00 0.00 0.00 1.89
409 410 5.608437 ACTCTGGATAGGAAGATTGCCATAA 59.392 40.000 0.00 0.00 0.00 1.90
410 411 5.158141 ACTCTGGATAGGAAGATTGCCATA 58.842 41.667 0.00 0.00 0.00 2.74
411 412 3.979347 ACTCTGGATAGGAAGATTGCCAT 59.021 43.478 0.00 0.00 0.00 4.40
440 441 2.031163 GGTGTGCTCGTGGCTTCT 59.969 61.111 5.00 0.00 42.39 2.85
443 444 3.233980 TGAGGTGTGCTCGTGGCT 61.234 61.111 5.00 0.00 42.39 4.75
444 445 3.044305 GTGAGGTGTGCTCGTGGC 61.044 66.667 0.00 0.00 42.22 5.01
445 446 1.665916 CAGTGAGGTGTGCTCGTGG 60.666 63.158 0.00 0.00 0.00 4.94
446 447 1.665916 CCAGTGAGGTGTGCTCGTG 60.666 63.158 0.00 0.00 0.00 4.35
447 448 1.399744 TTCCAGTGAGGTGTGCTCGT 61.400 55.000 0.00 0.00 39.02 4.18
448 449 0.249868 TTTCCAGTGAGGTGTGCTCG 60.250 55.000 0.00 0.00 39.02 5.03
449 450 1.967319 TTTTCCAGTGAGGTGTGCTC 58.033 50.000 0.00 0.00 39.02 4.26
452 453 4.580167 TCTTGAATTTTCCAGTGAGGTGTG 59.420 41.667 0.00 0.00 39.02 3.82
453 454 4.792068 TCTTGAATTTTCCAGTGAGGTGT 58.208 39.130 0.00 0.00 39.02 4.16
486 492 4.573201 GGTGGCGTTATTTTGTATAGCTCA 59.427 41.667 0.00 0.00 0.00 4.26
545 551 8.545420 TCTCGCTAACAAAATCCGTATAAAATC 58.455 33.333 0.00 0.00 0.00 2.17
552 558 7.924412 AGAATTATCTCGCTAACAAAATCCGTA 59.076 33.333 0.00 0.00 0.00 4.02
607 863 0.321122 GGGCTCCCTATGCAGATTCG 60.321 60.000 0.00 0.00 0.00 3.34
770 1027 4.258702 TCAGAAGGAGAGCACTGTTTAC 57.741 45.455 0.00 0.00 0.00 2.01
771 1028 4.588951 TCTTCAGAAGGAGAGCACTGTTTA 59.411 41.667 10.42 0.00 0.00 2.01
772 1029 3.389329 TCTTCAGAAGGAGAGCACTGTTT 59.611 43.478 10.42 0.00 0.00 2.83
773 1030 2.968574 TCTTCAGAAGGAGAGCACTGTT 59.031 45.455 10.42 0.00 0.00 3.16
774 1031 2.603021 TCTTCAGAAGGAGAGCACTGT 58.397 47.619 10.42 0.00 0.00 3.55
775 1032 3.448301 AGATCTTCAGAAGGAGAGCACTG 59.552 47.826 10.42 0.00 0.00 3.66
776 1033 3.711863 AGATCTTCAGAAGGAGAGCACT 58.288 45.455 10.42 0.00 0.00 4.40
811 1076 2.310538 GATTTGCCTCCCTGGGTATTG 58.689 52.381 13.56 1.01 36.00 1.90
869 1139 2.995574 AGGACGGCGGTGCTTACT 60.996 61.111 12.75 0.00 42.84 2.24
882 1152 3.299340 TCAAGCTACTTCGTCAAGGAC 57.701 47.619 0.00 0.00 33.37 3.85
883 1153 4.537135 AATCAAGCTACTTCGTCAAGGA 57.463 40.909 0.00 0.00 33.37 3.36
884 1154 6.910536 ATAAATCAAGCTACTTCGTCAAGG 57.089 37.500 0.00 0.00 33.37 3.61
885 1155 6.684555 GCAATAAATCAAGCTACTTCGTCAAG 59.315 38.462 0.00 0.00 35.50 3.02
886 1156 6.403200 GGCAATAAATCAAGCTACTTCGTCAA 60.403 38.462 0.00 0.00 0.00 3.18
887 1157 5.064707 GGCAATAAATCAAGCTACTTCGTCA 59.935 40.000 0.00 0.00 0.00 4.35
888 1158 5.064707 TGGCAATAAATCAAGCTACTTCGTC 59.935 40.000 0.00 0.00 0.00 4.20
889 1159 4.941263 TGGCAATAAATCAAGCTACTTCGT 59.059 37.500 0.00 0.00 0.00 3.85
890 1160 5.484173 TGGCAATAAATCAAGCTACTTCG 57.516 39.130 0.00 0.00 0.00 3.79
891 1161 7.315890 AGTTTGGCAATAAATCAAGCTACTTC 58.684 34.615 0.00 0.00 31.85 3.01
892 1162 7.232118 AGTTTGGCAATAAATCAAGCTACTT 57.768 32.000 0.00 0.00 31.85 2.24
893 1163 6.840780 AGTTTGGCAATAAATCAAGCTACT 57.159 33.333 0.00 0.00 31.85 2.57
894 1164 6.531594 GGAAGTTTGGCAATAAATCAAGCTAC 59.468 38.462 0.00 0.00 32.97 3.58
895 1165 6.210385 TGGAAGTTTGGCAATAAATCAAGCTA 59.790 34.615 0.00 0.00 32.97 3.32
896 1166 5.011943 TGGAAGTTTGGCAATAAATCAAGCT 59.988 36.000 0.00 0.00 34.32 3.74
897 1167 5.237048 TGGAAGTTTGGCAATAAATCAAGC 58.763 37.500 0.00 0.00 0.00 4.01
898 1168 6.314400 CCATGGAAGTTTGGCAATAAATCAAG 59.686 38.462 5.56 0.00 0.00 3.02
899 1169 6.013898 TCCATGGAAGTTTGGCAATAAATCAA 60.014 34.615 13.46 0.00 32.80 2.57
900 1170 5.483231 TCCATGGAAGTTTGGCAATAAATCA 59.517 36.000 13.46 0.00 32.80 2.57
905 1175 4.837860 AGTTTCCATGGAAGTTTGGCAATA 59.162 37.500 25.69 5.70 35.38 1.90
983 1274 3.058016 ACGCATTGTCTTTTGGTGAGATG 60.058 43.478 0.00 0.00 0.00 2.90
1015 1306 1.680651 CCAGCTGGAGGAGAGTCGT 60.681 63.158 29.88 0.00 37.39 4.34
1016 1307 1.662438 GACCAGCTGGAGGAGAGTCG 61.662 65.000 39.19 8.80 38.94 4.18
1017 1308 0.324275 AGACCAGCTGGAGGAGAGTC 60.324 60.000 39.19 22.96 38.94 3.36
1086 1380 0.902516 AGGAGGAGAAGTTGCTCGCT 60.903 55.000 0.00 0.00 44.58 4.93
1165 1459 1.556911 GAAGATGGAGGAGTGGAGCAA 59.443 52.381 0.00 0.00 0.00 3.91
1171 1465 2.093235 GGAGGTTGAAGATGGAGGAGTG 60.093 54.545 0.00 0.00 0.00 3.51
1369 3710 2.504244 GTTCGCGAGGTCGACCAG 60.504 66.667 35.00 27.53 43.02 4.00
1434 3775 4.143333 CCCAACGTCGCTCCCGAT 62.143 66.667 0.00 0.00 46.38 4.18
1447 3788 0.388907 GCGTAGTACAACTCGCCCAA 60.389 55.000 0.38 0.00 38.15 4.12
1483 3824 1.768870 GGCTGGGAATGCTAAGGAGTA 59.231 52.381 0.00 0.00 0.00 2.59
1609 3950 2.202756 GCCGTCCGGAGTGATGAC 60.203 66.667 3.06 0.00 37.50 3.06
1785 4126 3.764160 AAGCAGCCCGGCTATGAGC 62.764 63.158 12.83 11.61 45.07 4.26
1798 4139 3.664495 CTGCCACCTGTGAAGCAG 58.336 61.111 12.11 12.11 45.92 4.24
1935 4276 1.264288 CTTTGGCTGAGAACCGACAAC 59.736 52.381 0.00 0.00 0.00 3.32
2120 4461 2.511600 CGGCCATGTCGTTCCTCC 60.512 66.667 2.24 0.00 0.00 4.30
2250 4591 2.479566 ACTGGATGCTGTACAGGTTG 57.520 50.000 23.95 0.00 43.63 3.77
2277 4618 3.649277 CTCCGACCGGTTCCAGCTG 62.649 68.421 9.42 6.78 36.47 4.24
2279 4620 4.452733 CCTCCGACCGGTTCCAGC 62.453 72.222 9.42 0.00 36.47 4.85
2400 4741 1.248101 TGTTCACGCCCAGATCGAGA 61.248 55.000 0.00 0.00 0.00 4.04
2707 5052 3.014623 GCACCACTTAGGAATAACCACC 58.985 50.000 0.00 0.00 41.22 4.61
2708 5053 3.951663 AGCACCACTTAGGAATAACCAC 58.048 45.455 0.00 0.00 41.22 4.16
2709 5054 4.585879 GAAGCACCACTTAGGAATAACCA 58.414 43.478 0.00 0.00 39.29 3.67
2738 5083 4.162698 CACCAAAATCACCCATCCATCATT 59.837 41.667 0.00 0.00 0.00 2.57
2751 5096 4.097741 CGAGCCATTTATCCACCAAAATCA 59.902 41.667 0.00 0.00 0.00 2.57
2754 5099 2.757868 CCGAGCCATTTATCCACCAAAA 59.242 45.455 0.00 0.00 0.00 2.44
2767 5113 1.002257 TGCATTGTCACCGAGCCAT 60.002 52.632 0.00 0.00 0.00 4.40
2803 5149 2.819608 ACGGTTAGCACGGTTCTTACTA 59.180 45.455 0.00 0.00 32.73 1.82
2806 5152 1.612950 TCACGGTTAGCACGGTTCTTA 59.387 47.619 0.00 0.00 34.34 2.10
2826 5172 0.759060 GCCCCAGTGGTTCCTGTTTT 60.759 55.000 8.74 0.00 36.04 2.43
2911 5289 8.726988 GTCAAACAGAAGTTAGCCATACATAAA 58.273 33.333 0.00 0.00 36.84 1.40
2982 5360 4.641645 CACGGGCCAGCTTCCACA 62.642 66.667 4.39 0.00 0.00 4.17
3000 5378 0.737367 TTCCTTGCGATCACTCTGCG 60.737 55.000 0.00 0.00 0.00 5.18
3020 5398 0.306840 CCGTAATACTCGCTCTCGCA 59.693 55.000 0.00 0.00 35.30 5.10
3058 5436 6.479972 TTCTCAAACTCCTTGTAAGTCTCA 57.520 37.500 0.00 0.00 36.34 3.27
3062 5440 6.321181 TGCAATTTCTCAAACTCCTTGTAAGT 59.679 34.615 0.00 0.00 36.34 2.24
3110 5500 2.455032 GATCTGAGATTGGACGACGTG 58.545 52.381 4.58 0.00 0.00 4.49
3121 5511 1.064803 GCTGTGTCGTCGATCTGAGAT 59.935 52.381 0.00 0.00 0.00 2.75
3213 5603 1.185618 AGCTCCAAGCCGTGTGTAGA 61.186 55.000 0.00 0.00 43.77 2.59
3227 5617 1.069935 GGCTCGGATTGGTAGCTCC 59.930 63.158 0.00 0.00 36.48 4.70
3334 5729 7.566760 TGCTGAAAATAAAGTGAGAAAGTGA 57.433 32.000 0.00 0.00 0.00 3.41
3335 5730 8.697067 CAATGCTGAAAATAAAGTGAGAAAGTG 58.303 33.333 0.00 0.00 0.00 3.16
3336 5731 7.383300 GCAATGCTGAAAATAAAGTGAGAAAGT 59.617 33.333 0.00 0.00 0.00 2.66
3337 5732 7.148689 GGCAATGCTGAAAATAAAGTGAGAAAG 60.149 37.037 4.82 0.00 0.00 2.62
3338 5733 6.646240 GGCAATGCTGAAAATAAAGTGAGAAA 59.354 34.615 4.82 0.00 0.00 2.52
3339 5734 6.158598 GGCAATGCTGAAAATAAAGTGAGAA 58.841 36.000 4.82 0.00 0.00 2.87
3340 5735 5.336690 GGGCAATGCTGAAAATAAAGTGAGA 60.337 40.000 4.82 0.00 0.00 3.27
3341 5736 4.866486 GGGCAATGCTGAAAATAAAGTGAG 59.134 41.667 4.82 0.00 0.00 3.51
3342 5737 4.282957 TGGGCAATGCTGAAAATAAAGTGA 59.717 37.500 4.82 0.00 0.00 3.41
3369 5764 6.517605 TGCCTACAAAATTTAGGTTGTTTCC 58.482 36.000 7.22 0.00 38.77 3.13
3399 5794 1.267121 TCCTAAGCTCGACAAAGGCT 58.733 50.000 0.00 0.00 37.99 4.58
3426 5821 0.882927 GTTGCAAGTACTCCCGCACA 60.883 55.000 12.61 4.28 33.29 4.57
3471 5866 2.760650 ACTAACTGCCATCATCTGACGA 59.239 45.455 0.00 0.00 0.00 4.20
3486 5881 6.779860 TGATTCTAAGAGGGCAAAACTAACT 58.220 36.000 0.00 0.00 0.00 2.24
3530 5926 5.829924 AGCAAATCAGAAGGTCAGAAGAAAA 59.170 36.000 0.00 0.00 0.00 2.29
3547 5943 5.048083 TGGATGTCAGTTAACCAAGCAAATC 60.048 40.000 0.88 0.00 0.00 2.17
3548 5944 4.832266 TGGATGTCAGTTAACCAAGCAAAT 59.168 37.500 0.88 0.00 0.00 2.32
3575 5971 2.956987 GTGCAAGACGCCAGCATT 59.043 55.556 0.00 0.00 40.78 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.