Multiple sequence alignment - TraesCS3A01G374300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G374300 chr3A 100.000 4451 0 0 610 5060 623935366 623939816 0.000000e+00 8220.0
1 TraesCS3A01G374300 chr3A 100.000 182 0 0 1 182 623934757 623934938 2.260000e-88 337.0
2 TraesCS3A01G374300 chr3A 93.151 73 5 0 4789 4861 54282547 54282475 1.930000e-19 108.0
3 TraesCS3A01G374300 chr3D 94.126 2724 106 18 610 3317 481213516 481216201 0.000000e+00 4095.0
4 TraesCS3A01G374300 chr3D 95.749 988 26 9 3578 4554 481216449 481217431 0.000000e+00 1578.0
5 TraesCS3A01G374300 chr3D 91.156 147 6 1 3318 3464 481216312 481216451 5.170000e-45 193.0
6 TraesCS3A01G374300 chr3D 87.574 169 2 7 30 182 481213193 481213358 1.450000e-40 178.0
7 TraesCS3A01G374300 chr3D 94.845 97 3 2 4491 4587 481217430 481217524 3.160000e-32 150.0
8 TraesCS3A01G374300 chr3D 93.151 73 5 0 4789 4861 179456732 179456660 1.930000e-19 108.0
9 TraesCS3A01G374300 chr3B 94.015 2690 103 28 610 3263 642067415 642070082 0.000000e+00 4023.0
10 TraesCS3A01G374300 chr3B 93.350 1188 58 14 3598 4773 642070534 642071712 0.000000e+00 1736.0
11 TraesCS3A01G374300 chr3B 92.891 211 12 2 4852 5060 642073644 642073853 2.290000e-78 303.0
12 TraesCS3A01G374300 chr3B 89.655 203 8 3 3262 3464 642070334 642070523 3.910000e-61 246.0
13 TraesCS3A01G374300 chr3B 95.763 118 5 0 3463 3580 308386946 308386829 1.860000e-44 191.0
14 TraesCS3A01G374300 chr3B 84.884 172 9 5 27 182 642066988 642067158 1.890000e-34 158.0
15 TraesCS3A01G374300 chr5D 94.958 119 6 0 3462 3580 345102049 345101931 2.410000e-43 187.0
16 TraesCS3A01G374300 chr5D 93.976 83 4 1 1741 1823 426010483 426010564 1.910000e-24 124.0
17 TraesCS3A01G374300 chr5D 94.521 73 4 0 4789 4861 373835133 373835061 4.140000e-21 113.0
18 TraesCS3A01G374300 chr5D 90.123 81 8 0 4781 4861 561630094 561630014 6.930000e-19 106.0
19 TraesCS3A01G374300 chr4A 94.262 122 7 0 3460 3581 590222157 590222036 2.410000e-43 187.0
20 TraesCS3A01G374300 chr2B 92.308 130 10 0 3452 3581 329979291 329979420 8.650000e-43 185.0
21 TraesCS3A01G374300 chr2B 94.737 76 3 1 4787 4862 689375506 689375580 3.200000e-22 117.0
22 TraesCS3A01G374300 chr2A 93.600 125 7 1 3463 3587 606523687 606523810 8.650000e-43 185.0
23 TraesCS3A01G374300 chr2A 94.068 118 7 0 3463 3580 431044784 431044667 4.020000e-41 180.0
24 TraesCS3A01G374300 chr5A 93.443 122 8 0 3459 3580 446022452 446022573 1.120000e-41 182.0
25 TraesCS3A01G374300 chr1A 92.248 129 9 1 3457 3584 208212527 208212655 1.120000e-41 182.0
26 TraesCS3A01G374300 chr1A 93.243 74 5 0 4788 4861 566679962 566679889 5.360000e-20 110.0
27 TraesCS3A01G374300 chr1A 91.667 72 6 0 4791 4862 551155095 551155024 3.220000e-17 100.0
28 TraesCS3A01G374300 chr1D 88.514 148 15 2 3437 3583 240590479 240590625 1.450000e-40 178.0
29 TraesCS3A01G374300 chr7D 95.062 81 4 0 1741 1821 76611373 76611453 1.480000e-25 128.0
30 TraesCS3A01G374300 chr7D 95.000 80 4 0 1741 1820 633248729 633248808 5.320000e-25 126.0
31 TraesCS3A01G374300 chr7D 90.526 95 8 1 1735 1828 76563131 76563225 1.910000e-24 124.0
32 TraesCS3A01G374300 chr7D 91.765 85 6 1 1741 1825 74399234 74399151 3.200000e-22 117.0
33 TraesCS3A01G374300 chr7D 83.673 98 12 3 4788 4885 617526396 617526303 6.980000e-14 89.8
34 TraesCS3A01G374300 chr7B 92.135 89 6 1 1741 1828 23082606 23082694 1.910000e-24 124.0
35 TraesCS3A01G374300 chr7B 93.827 81 5 0 1741 1821 17534345 17534265 6.880000e-24 122.0
36 TraesCS3A01G374300 chr7B 93.827 81 4 1 1742 1822 23097471 23097550 2.470000e-23 121.0
37 TraesCS3A01G374300 chr5B 90.526 95 7 2 1741 1834 515582208 515582301 1.910000e-24 124.0
38 TraesCS3A01G374300 chr5B 93.023 43 2 1 3269 3311 8901200 8901159 1.520000e-05 62.1
39 TraesCS3A01G374300 chr6B 89.744 78 8 0 4784 4861 701661348 701661271 3.220000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G374300 chr3A 623934757 623939816 5059 False 4278.5 8220 100.000 1 5060 2 chr3A.!!$F1 5059
1 TraesCS3A01G374300 chr3D 481213193 481217524 4331 False 1238.8 4095 92.690 30 4587 5 chr3D.!!$F1 4557
2 TraesCS3A01G374300 chr3B 642066988 642073853 6865 False 1293.2 4023 90.959 27 5060 5 chr3B.!!$F1 5033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.178891 TCTTCTTGACAGCCCTCCCT 60.179 55.0 0.00 0.00 0.00 4.20 F
34 35 0.251634 CTTCTTGACAGCCCTCCCTC 59.748 60.0 0.00 0.00 0.00 4.30 F
1352 1377 0.614812 AGGTGCATTTCCAATTGGGC 59.385 50.0 24.29 18.88 36.21 5.36 F
1535 1560 0.777678 GGAAGGGATGGGGATGGGAT 60.778 60.0 0.00 0.00 0.00 3.85 F
3172 3230 0.038343 ATGCTTTGCCGCGTTGATTT 60.038 45.0 4.92 0.00 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1357 1382 0.389166 GCAGAAGACGACACTGAGGG 60.389 60.000 13.61 0.0 34.07 4.30 R
1363 1388 1.464997 GGGAAATGCAGAAGACGACAC 59.535 52.381 0.00 0.0 0.00 3.67 R
2696 2743 0.392998 GCCATGGTAGTGGGTCTGTG 60.393 60.000 14.67 0.0 39.73 3.66 R
3198 3256 0.871722 GCCGTTGTTGTCTGCATACA 59.128 50.000 0.00 0.0 0.00 2.29 R
4474 4908 1.443407 CTGCCCTAGTCCATCACCG 59.557 63.158 0.00 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.674052 CCTCTTCATCCTCTTCTTCTTGA 57.326 43.478 0.00 0.00 0.00 3.02
23 24 5.418676 CCTCTTCATCCTCTTCTTCTTGAC 58.581 45.833 0.00 0.00 0.00 3.18
24 25 5.046735 CCTCTTCATCCTCTTCTTCTTGACA 60.047 44.000 0.00 0.00 0.00 3.58
25 26 6.035368 TCTTCATCCTCTTCTTCTTGACAG 57.965 41.667 0.00 0.00 0.00 3.51
26 27 4.199432 TCATCCTCTTCTTCTTGACAGC 57.801 45.455 0.00 0.00 0.00 4.40
27 28 3.055530 TCATCCTCTTCTTCTTGACAGCC 60.056 47.826 0.00 0.00 0.00 4.85
28 29 1.625818 TCCTCTTCTTCTTGACAGCCC 59.374 52.381 0.00 0.00 0.00 5.19
29 30 1.627834 CCTCTTCTTCTTGACAGCCCT 59.372 52.381 0.00 0.00 0.00 5.19
30 31 2.354604 CCTCTTCTTCTTGACAGCCCTC 60.355 54.545 0.00 0.00 0.00 4.30
31 32 1.625818 TCTTCTTCTTGACAGCCCTCC 59.374 52.381 0.00 0.00 0.00 4.30
32 33 0.693049 TTCTTCTTGACAGCCCTCCC 59.307 55.000 0.00 0.00 0.00 4.30
33 34 0.178891 TCTTCTTGACAGCCCTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
34 35 0.251634 CTTCTTGACAGCCCTCCCTC 59.748 60.000 0.00 0.00 0.00 4.30
35 36 1.201429 TTCTTGACAGCCCTCCCTCC 61.201 60.000 0.00 0.00 0.00 4.30
672 695 1.075970 CAGATCCCCCTCGGTCTCA 60.076 63.158 0.00 0.00 0.00 3.27
1266 1289 2.845345 GCCCGATCCCATTCCCCAT 61.845 63.158 0.00 0.00 0.00 4.00
1275 1298 1.750778 CCCATTCCCCATTCGTTTCAG 59.249 52.381 0.00 0.00 0.00 3.02
1283 1306 3.504863 CCCATTCGTTTCAGCATTTCAG 58.495 45.455 0.00 0.00 0.00 3.02
1284 1307 2.919229 CCATTCGTTTCAGCATTTCAGC 59.081 45.455 0.00 0.00 0.00 4.26
1286 1309 3.988379 TTCGTTTCAGCATTTCAGCTT 57.012 38.095 0.00 0.00 43.70 3.74
1287 1310 3.542712 TCGTTTCAGCATTTCAGCTTC 57.457 42.857 0.00 0.00 43.70 3.86
1288 1311 3.141398 TCGTTTCAGCATTTCAGCTTCT 58.859 40.909 0.00 0.00 43.70 2.85
1289 1312 3.187227 TCGTTTCAGCATTTCAGCTTCTC 59.813 43.478 0.00 0.00 43.70 2.87
1291 1314 4.474113 GTTTCAGCATTTCAGCTTCTCTG 58.526 43.478 0.00 0.00 43.70 3.35
1292 1315 3.413846 TCAGCATTTCAGCTTCTCTGT 57.586 42.857 0.00 0.00 43.70 3.41
1293 1316 3.748083 TCAGCATTTCAGCTTCTCTGTT 58.252 40.909 0.00 0.00 43.70 3.16
1294 1317 4.898320 TCAGCATTTCAGCTTCTCTGTTA 58.102 39.130 0.00 0.00 43.70 2.41
1295 1318 4.692625 TCAGCATTTCAGCTTCTCTGTTAC 59.307 41.667 0.00 0.00 43.70 2.50
1297 1320 4.934602 AGCATTTCAGCTTCTCTGTTACTC 59.065 41.667 0.00 0.00 43.70 2.59
1298 1321 4.934602 GCATTTCAGCTTCTCTGTTACTCT 59.065 41.667 0.00 0.00 43.32 3.24
1299 1322 6.071108 AGCATTTCAGCTTCTCTGTTACTCTA 60.071 38.462 0.00 0.00 43.70 2.43
1300 1323 6.591834 GCATTTCAGCTTCTCTGTTACTCTAA 59.408 38.462 0.00 0.00 43.32 2.10
1303 1326 6.902771 TCAGCTTCTCTGTTACTCTAACTT 57.097 37.500 0.00 0.00 43.32 2.66
1304 1327 6.915349 TCAGCTTCTCTGTTACTCTAACTTC 58.085 40.000 0.00 0.00 43.32 3.01
1320 1345 4.731313 AACTTCAGGATTTCTGAGGGTT 57.269 40.909 8.78 8.69 45.74 4.11
1321 1346 5.066913 AACTTCAGGATTTCTGAGGGTTT 57.933 39.130 8.78 0.00 45.74 3.27
1322 1347 4.829492 AACTTCAGGATTTCTGAGGGTTTG 59.171 41.667 8.78 0.00 45.74 2.93
1323 1348 5.399038 AACTTCAGGATTTCTGAGGGTTTGA 60.399 40.000 8.78 0.00 45.74 2.69
1324 1349 4.021102 TCAGGATTTCTGAGGGTTTGAC 57.979 45.455 0.00 0.00 46.71 3.18
1326 1351 2.372172 AGGATTTCTGAGGGTTTGACGT 59.628 45.455 0.00 0.00 0.00 4.34
1327 1352 3.581332 AGGATTTCTGAGGGTTTGACGTA 59.419 43.478 0.00 0.00 0.00 3.57
1328 1353 3.683340 GGATTTCTGAGGGTTTGACGTAC 59.317 47.826 0.00 0.00 0.00 3.67
1352 1377 0.614812 AGGTGCATTTCCAATTGGGC 59.385 50.000 24.29 18.88 36.21 5.36
1357 1382 2.006552 GCATTTCCAATTGGGCGGTTC 61.007 52.381 24.29 6.26 36.21 3.62
1381 1406 3.059884 TCAGTGTCGTCTTCTGCATTTC 58.940 45.455 0.00 0.00 0.00 2.17
1480 1505 3.479269 GCCGTGTACTCGTGCTGC 61.479 66.667 15.43 8.27 0.00 5.25
1535 1560 0.777678 GGAAGGGATGGGGATGGGAT 60.778 60.000 0.00 0.00 0.00 3.85
1588 1617 4.161333 GTCGATCAAAATGCTTCTGGTTG 58.839 43.478 0.00 0.00 0.00 3.77
1639 1668 6.985188 TTTTCTCTCATCCGATTGGTAAAG 57.015 37.500 0.00 0.00 36.30 1.85
1688 1717 1.743958 TCGTGTAGTAGAGCAGAAGCC 59.256 52.381 0.00 0.00 43.56 4.35
1703 1732 5.125097 AGCAGAAGCCACTGATAGAAAAATG 59.875 40.000 11.19 0.00 43.56 2.32
1738 1767 3.381272 TCCTTCCAAGTGCAAAACAGAAG 59.619 43.478 0.00 0.00 34.72 2.85
1739 1768 2.869233 TCCAAGTGCAAAACAGAAGC 57.131 45.000 0.00 0.00 0.00 3.86
1828 1862 2.099427 GACCAAACGCCCTTGTTGTTAA 59.901 45.455 0.00 0.00 31.10 2.01
2159 2195 7.225538 GCTGTTTCATCTAGCTTATTCTGCTTA 59.774 37.037 0.00 0.00 41.46 3.09
2161 2197 9.448438 TGTTTCATCTAGCTTATTCTGCTTAAA 57.552 29.630 0.00 0.00 41.46 1.52
2162 2198 9.928236 GTTTCATCTAGCTTATTCTGCTTAAAG 57.072 33.333 0.00 0.00 41.46 1.85
2163 2199 7.721286 TCATCTAGCTTATTCTGCTTAAAGC 57.279 36.000 0.00 0.00 43.66 3.51
2239 2279 6.037098 GGACTGTGCTACTAGTATGTTTCAG 58.963 44.000 2.33 10.10 0.00 3.02
2425 2468 5.970640 TCCTCTCATAATCAGTACCCCTTTT 59.029 40.000 0.00 0.00 0.00 2.27
2478 2521 2.457366 AGGCAGTAACCGAAAGTGAG 57.543 50.000 0.00 0.00 33.69 3.51
2696 2743 7.650504 GGGTTAATTTTAGTGTTCAAGTTGGAC 59.349 37.037 7.40 7.40 0.00 4.02
2857 2904 0.615331 CAGTGGCACATGTAGGGTCT 59.385 55.000 21.41 0.00 44.52 3.85
2954 3007 1.856265 GCGCCTGGAAAGTTGTGAGG 61.856 60.000 0.00 0.00 0.00 3.86
3058 3113 6.208988 TGTTATTCTCACTACAGCTAGGTG 57.791 41.667 20.16 20.16 0.00 4.00
3109 3164 1.134965 GGAGTTGACGTAGCTCAGCAT 60.135 52.381 0.00 0.00 38.29 3.79
3172 3230 0.038343 ATGCTTTGCCGCGTTGATTT 60.038 45.000 4.92 0.00 0.00 2.17
3177 3235 2.152297 TTGCCGCGTTGATTTGCCAT 62.152 50.000 4.92 0.00 0.00 4.40
3198 3256 5.068198 CCATGCAGTATCTTGGCATTAAGTT 59.932 40.000 0.00 0.00 45.34 2.66
3217 3275 0.871722 TGTATGCAGACAACAACGGC 59.128 50.000 12.63 0.00 0.00 5.68
3244 3302 4.570930 CTCAGAACCAACTTAGAAGGGTC 58.429 47.826 4.99 4.99 39.47 4.46
3266 3577 6.196724 GGTCGACAACTTCTACAATCTATTCG 59.803 42.308 18.91 0.00 0.00 3.34
3285 3596 2.489329 TCGTTACTCCCTCCGTAACTTG 59.511 50.000 10.25 0.00 42.67 3.16
3293 3604 6.371278 ACTCCCTCCGTAACTTGATATAAGA 58.629 40.000 0.00 0.00 0.00 2.10
3297 3608 7.039923 TCCCTCCGTAACTTGATATAAGATGTC 60.040 40.741 0.00 0.00 0.00 3.06
3299 3610 8.361139 CCTCCGTAACTTGATATAAGATGTCTT 58.639 37.037 0.45 0.45 39.85 3.01
3386 3807 5.917462 TGTACATGCATGCTAGAATAGTGT 58.083 37.500 26.53 6.50 41.93 3.55
3392 3813 4.877823 TGCATGCTAGAATAGTGTGAAAGG 59.122 41.667 20.33 0.00 41.93 3.11
3468 3889 6.936968 ACATTATCCTTATCTGGTACTCCC 57.063 41.667 0.00 0.00 0.00 4.30
3469 3890 6.635021 ACATTATCCTTATCTGGTACTCCCT 58.365 40.000 0.00 0.00 0.00 4.20
3470 3891 6.726764 ACATTATCCTTATCTGGTACTCCCTC 59.273 42.308 0.00 0.00 0.00 4.30
3471 3892 6.547396 TTATCCTTATCTGGTACTCCCTCT 57.453 41.667 0.00 0.00 0.00 3.69
3472 3893 4.186077 TCCTTATCTGGTACTCCCTCTG 57.814 50.000 0.00 0.00 0.00 3.35
3473 3894 3.532232 TCCTTATCTGGTACTCCCTCTGT 59.468 47.826 0.00 0.00 0.00 3.41
3474 3895 3.892588 CCTTATCTGGTACTCCCTCTGTC 59.107 52.174 0.00 0.00 0.00 3.51
3475 3896 4.386986 CCTTATCTGGTACTCCCTCTGTCT 60.387 50.000 0.00 0.00 0.00 3.41
3476 3897 2.516227 TCTGGTACTCCCTCTGTCTG 57.484 55.000 0.00 0.00 0.00 3.51
3477 3898 1.006043 TCTGGTACTCCCTCTGTCTGG 59.994 57.143 0.00 0.00 0.00 3.86
3478 3899 1.006043 CTGGTACTCCCTCTGTCTGGA 59.994 57.143 0.00 0.00 0.00 3.86
3479 3900 1.431633 TGGTACTCCCTCTGTCTGGAA 59.568 52.381 0.00 0.00 0.00 3.53
3480 3901 2.158219 TGGTACTCCCTCTGTCTGGAAA 60.158 50.000 0.00 0.00 0.00 3.13
3481 3902 2.904434 GGTACTCCCTCTGTCTGGAAAA 59.096 50.000 0.00 0.00 0.00 2.29
3482 3903 3.326880 GGTACTCCCTCTGTCTGGAAAAA 59.673 47.826 0.00 0.00 0.00 1.94
3483 3904 3.493767 ACTCCCTCTGTCTGGAAAAAC 57.506 47.619 0.00 0.00 0.00 2.43
3484 3905 3.049344 ACTCCCTCTGTCTGGAAAAACT 58.951 45.455 0.00 0.00 0.00 2.66
3485 3906 3.459969 ACTCCCTCTGTCTGGAAAAACTT 59.540 43.478 0.00 0.00 0.00 2.66
3486 3907 3.817647 CTCCCTCTGTCTGGAAAAACTTG 59.182 47.826 0.00 0.00 0.00 3.16
3487 3908 3.202151 TCCCTCTGTCTGGAAAAACTTGT 59.798 43.478 0.00 0.00 0.00 3.16
3488 3909 3.565902 CCCTCTGTCTGGAAAAACTTGTC 59.434 47.826 0.00 0.00 0.00 3.18
3489 3910 3.565902 CCTCTGTCTGGAAAAACTTGTCC 59.434 47.826 0.00 0.00 0.00 4.02
3490 3911 3.551846 TCTGTCTGGAAAAACTTGTCCC 58.448 45.455 0.00 0.00 32.48 4.46
3491 3912 3.053991 TCTGTCTGGAAAAACTTGTCCCA 60.054 43.478 0.00 0.00 32.48 4.37
3492 3913 3.699038 CTGTCTGGAAAAACTTGTCCCAA 59.301 43.478 0.00 0.00 32.48 4.12
3493 3914 3.699038 TGTCTGGAAAAACTTGTCCCAAG 59.301 43.478 2.54 2.54 32.48 3.61
3494 3915 2.693074 TCTGGAAAAACTTGTCCCAAGC 59.307 45.455 3.96 0.00 32.48 4.01
3495 3916 2.695147 CTGGAAAAACTTGTCCCAAGCT 59.305 45.455 3.96 0.00 32.48 3.74
3496 3917 3.103742 TGGAAAAACTTGTCCCAAGCTT 58.896 40.909 0.00 0.00 32.48 3.74
3497 3918 3.118811 TGGAAAAACTTGTCCCAAGCTTG 60.119 43.478 19.93 19.93 32.48 4.01
3498 3919 3.118775 GGAAAAACTTGTCCCAAGCTTGT 60.119 43.478 24.35 1.49 0.00 3.16
3499 3920 4.503910 GAAAAACTTGTCCCAAGCTTGTT 58.496 39.130 24.35 8.38 0.00 2.83
3500 3921 4.551702 AAAACTTGTCCCAAGCTTGTTT 57.448 36.364 24.35 13.36 0.00 2.83
3501 3922 3.801114 AACTTGTCCCAAGCTTGTTTC 57.199 42.857 24.35 13.85 0.00 2.78
3502 3923 3.018423 ACTTGTCCCAAGCTTGTTTCT 57.982 42.857 24.35 0.00 0.00 2.52
3503 3924 2.952310 ACTTGTCCCAAGCTTGTTTCTC 59.048 45.455 24.35 10.65 0.00 2.87
3504 3925 2.727123 TGTCCCAAGCTTGTTTCTCA 57.273 45.000 24.35 12.85 0.00 3.27
3505 3926 3.011566 TGTCCCAAGCTTGTTTCTCAA 57.988 42.857 24.35 1.41 34.61 3.02
3506 3927 3.360867 TGTCCCAAGCTTGTTTCTCAAA 58.639 40.909 24.35 0.00 35.48 2.69
3507 3928 3.960102 TGTCCCAAGCTTGTTTCTCAAAT 59.040 39.130 24.35 0.00 35.48 2.32
3508 3929 4.202141 TGTCCCAAGCTTGTTTCTCAAATG 60.202 41.667 24.35 5.47 35.48 2.32
3509 3930 3.321682 TCCCAAGCTTGTTTCTCAAATGG 59.678 43.478 24.35 14.01 35.48 3.16
3510 3931 3.321682 CCCAAGCTTGTTTCTCAAATGGA 59.678 43.478 24.35 0.00 36.92 3.41
3511 3932 4.020839 CCCAAGCTTGTTTCTCAAATGGAT 60.021 41.667 24.35 0.00 36.92 3.41
3512 3933 4.927425 CCAAGCTTGTTTCTCAAATGGATG 59.073 41.667 24.35 0.00 36.92 3.51
3513 3934 5.510179 CCAAGCTTGTTTCTCAAATGGATGT 60.510 40.000 24.35 0.00 36.92 3.06
3514 3935 6.294675 CCAAGCTTGTTTCTCAAATGGATGTA 60.295 38.462 24.35 0.00 36.92 2.29
3515 3936 7.318141 CAAGCTTGTTTCTCAAATGGATGTAT 58.682 34.615 18.65 0.00 35.48 2.29
3516 3937 7.093322 AGCTTGTTTCTCAAATGGATGTATC 57.907 36.000 0.00 0.00 35.48 2.24
3517 3938 6.888632 AGCTTGTTTCTCAAATGGATGTATCT 59.111 34.615 0.00 0.00 35.48 1.98
3518 3939 8.049117 AGCTTGTTTCTCAAATGGATGTATCTA 58.951 33.333 0.00 0.00 35.48 1.98
3519 3940 8.341173 GCTTGTTTCTCAAATGGATGTATCTAG 58.659 37.037 0.00 0.00 35.48 2.43
3520 3941 7.792374 TGTTTCTCAAATGGATGTATCTAGC 57.208 36.000 0.00 0.00 0.00 3.42
3521 3942 7.337938 TGTTTCTCAAATGGATGTATCTAGCA 58.662 34.615 0.00 0.00 0.00 3.49
3522 3943 7.280876 TGTTTCTCAAATGGATGTATCTAGCAC 59.719 37.037 0.00 0.00 0.00 4.40
3523 3944 6.737720 TCTCAAATGGATGTATCTAGCACT 57.262 37.500 0.00 0.00 0.00 4.40
3524 3945 7.839680 TCTCAAATGGATGTATCTAGCACTA 57.160 36.000 0.00 0.00 0.00 2.74
3525 3946 8.250143 TCTCAAATGGATGTATCTAGCACTAA 57.750 34.615 0.00 0.00 0.00 2.24
3526 3947 8.144478 TCTCAAATGGATGTATCTAGCACTAAC 58.856 37.037 0.00 0.00 0.00 2.34
3527 3948 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
3528 3949 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
3529 3950 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
3530 3951 7.603180 ATGGATGTATCTAGCACTAACTTGA 57.397 36.000 0.00 0.00 0.00 3.02
3531 3952 7.603180 TGGATGTATCTAGCACTAACTTGAT 57.397 36.000 0.00 0.00 36.37 2.57
3532 3953 7.436933 TGGATGTATCTAGCACTAACTTGATG 58.563 38.462 0.00 0.00 34.60 3.07
3533 3954 6.367422 GGATGTATCTAGCACTAACTTGATGC 59.633 42.308 0.00 0.00 39.74 3.91
3543 3964 7.344910 GCACTAACTTGATGCTAGATACATC 57.655 40.000 0.00 0.00 43.46 3.06
3544 3965 6.367422 GCACTAACTTGATGCTAGATACATCC 59.633 42.308 0.00 0.00 42.68 3.51
3545 3966 7.436933 CACTAACTTGATGCTAGATACATCCA 58.563 38.462 0.00 0.00 42.68 3.41
3546 3967 8.093307 CACTAACTTGATGCTAGATACATCCAT 58.907 37.037 0.00 0.00 42.68 3.41
3547 3968 8.654997 ACTAACTTGATGCTAGATACATCCATT 58.345 33.333 0.00 0.00 42.68 3.16
3548 3969 9.499479 CTAACTTGATGCTAGATACATCCATTT 57.501 33.333 0.00 0.00 42.68 2.32
3549 3970 7.741027 ACTTGATGCTAGATACATCCATTTG 57.259 36.000 0.00 0.00 42.68 2.32
3550 3971 7.512130 ACTTGATGCTAGATACATCCATTTGA 58.488 34.615 0.00 0.00 42.68 2.69
3551 3972 7.660617 ACTTGATGCTAGATACATCCATTTGAG 59.339 37.037 0.00 0.00 42.68 3.02
3552 3973 7.307131 TGATGCTAGATACATCCATTTGAGA 57.693 36.000 0.00 0.00 42.68 3.27
3553 3974 7.384477 TGATGCTAGATACATCCATTTGAGAG 58.616 38.462 0.00 0.00 42.68 3.20
3554 3975 6.983906 TGCTAGATACATCCATTTGAGAGA 57.016 37.500 0.00 0.00 0.00 3.10
3555 3976 6.753180 TGCTAGATACATCCATTTGAGAGAC 58.247 40.000 0.00 0.00 0.00 3.36
3556 3977 6.324770 TGCTAGATACATCCATTTGAGAGACA 59.675 38.462 0.00 0.00 0.00 3.41
3557 3978 7.147672 TGCTAGATACATCCATTTGAGAGACAA 60.148 37.037 0.00 0.00 36.65 3.18
3558 3979 7.384660 GCTAGATACATCCATTTGAGAGACAAG 59.615 40.741 0.00 0.00 39.77 3.16
3559 3980 6.054295 AGATACATCCATTTGAGAGACAAGC 58.946 40.000 0.00 0.00 39.77 4.01
3560 3981 4.298103 ACATCCATTTGAGAGACAAGCT 57.702 40.909 0.00 0.00 39.77 3.74
3561 3982 4.660168 ACATCCATTTGAGAGACAAGCTT 58.340 39.130 0.00 0.00 39.77 3.74
3562 3983 5.075493 ACATCCATTTGAGAGACAAGCTTT 58.925 37.500 0.00 0.00 39.77 3.51
3563 3984 5.537674 ACATCCATTTGAGAGACAAGCTTTT 59.462 36.000 0.00 0.00 39.77 2.27
3564 3985 6.041296 ACATCCATTTGAGAGACAAGCTTTTT 59.959 34.615 0.00 0.00 39.77 1.94
3565 3986 6.076981 TCCATTTGAGAGACAAGCTTTTTC 57.923 37.500 0.00 0.00 39.77 2.29
3566 3987 4.913924 CCATTTGAGAGACAAGCTTTTTCG 59.086 41.667 0.00 0.00 39.77 3.46
3567 3988 4.552166 TTTGAGAGACAAGCTTTTTCGG 57.448 40.909 0.00 0.00 39.77 4.30
3568 3989 3.469008 TGAGAGACAAGCTTTTTCGGA 57.531 42.857 0.00 0.00 0.00 4.55
3569 3990 3.804036 TGAGAGACAAGCTTTTTCGGAA 58.196 40.909 0.00 0.00 0.00 4.30
3570 3991 3.809832 TGAGAGACAAGCTTTTTCGGAAG 59.190 43.478 0.00 0.00 0.00 3.46
3571 3992 3.142174 AGAGACAAGCTTTTTCGGAAGG 58.858 45.455 0.00 0.00 0.00 3.46
3572 3993 3.139077 GAGACAAGCTTTTTCGGAAGGA 58.861 45.455 0.00 0.00 0.00 3.36
3573 3994 3.142174 AGACAAGCTTTTTCGGAAGGAG 58.858 45.455 0.00 0.00 0.00 3.69
3574 3995 2.226674 GACAAGCTTTTTCGGAAGGAGG 59.773 50.000 0.00 0.00 0.00 4.30
3575 3996 1.541588 CAAGCTTTTTCGGAAGGAGGG 59.458 52.381 0.00 0.00 0.00 4.30
3576 3997 1.064825 AGCTTTTTCGGAAGGAGGGA 58.935 50.000 0.00 0.00 0.00 4.20
3577 3998 1.003696 AGCTTTTTCGGAAGGAGGGAG 59.996 52.381 0.00 0.00 0.00 4.30
3578 3999 1.271434 GCTTTTTCGGAAGGAGGGAGT 60.271 52.381 0.00 0.00 0.00 3.85
3579 4000 2.027469 GCTTTTTCGGAAGGAGGGAGTA 60.027 50.000 0.00 0.00 0.00 2.59
3580 4001 3.863041 CTTTTTCGGAAGGAGGGAGTAG 58.137 50.000 0.00 0.00 0.00 2.57
3581 4002 2.617840 TTTCGGAAGGAGGGAGTAGT 57.382 50.000 0.00 0.00 0.00 2.73
3966 4390 1.129917 ATCTGGTCTCCATGCTCAGG 58.870 55.000 0.00 0.00 30.82 3.86
4064 4488 7.342026 CCTACTTGTAAAATCCCCATAAGCTTT 59.658 37.037 3.20 0.00 0.00 3.51
4067 4491 8.113462 ACTTGTAAAATCCCCATAAGCTTTAGA 58.887 33.333 3.20 0.00 0.00 2.10
4251 4683 0.107508 AGTGATAGCAATGGCAGCGT 60.108 50.000 0.00 0.00 44.61 5.07
4252 4684 0.734889 GTGATAGCAATGGCAGCGTT 59.265 50.000 0.00 0.00 44.61 4.84
4253 4685 1.133025 GTGATAGCAATGGCAGCGTTT 59.867 47.619 0.00 0.00 44.61 3.60
4254 4686 1.818060 TGATAGCAATGGCAGCGTTTT 59.182 42.857 0.00 0.00 44.61 2.43
4338 4771 3.348236 CGCAAGGCCATGGCTATC 58.652 61.111 34.70 19.40 37.50 2.08
4405 4838 5.413309 TTGGGTTGACAAGTTCATTTTGT 57.587 34.783 0.00 0.00 41.21 2.83
4414 4847 9.462174 TTGACAAGTTCATTTTGTTGATATGAC 57.538 29.630 0.00 0.00 38.78 3.06
4474 4908 7.201679 CCAGTTTGACAGATCATCAGTTTATCC 60.202 40.741 0.00 0.00 33.85 2.59
4532 5028 8.822805 TGAGTTTATGGTAAGATTAGTTCTGGT 58.177 33.333 0.00 0.00 33.93 4.00
4572 5068 5.394333 GGACCACTTAGTAATCTCACCAGTC 60.394 48.000 0.00 0.00 0.00 3.51
4658 5154 8.847196 AGGAGTTAAAAAGAACATGAACCTAAC 58.153 33.333 0.00 0.00 0.00 2.34
4665 5161 6.619801 AAGAACATGAACCTAACACACTTC 57.380 37.500 0.00 0.00 0.00 3.01
4670 5166 8.514330 AACATGAACCTAACACACTTCTAAAA 57.486 30.769 0.00 0.00 0.00 1.52
4672 5168 9.787435 ACATGAACCTAACACACTTCTAAAATA 57.213 29.630 0.00 0.00 0.00 1.40
4719 5218 8.070034 TCTTTTTGGCATTCATCATTGACTAT 57.930 30.769 0.00 0.00 0.00 2.12
4738 5237 5.103000 ACTATAAGCGTGCAACTTCACTAG 58.897 41.667 6.52 8.95 34.92 2.57
4743 5242 2.286833 GCGTGCAACTTCACTAGTTCAA 59.713 45.455 0.00 0.00 45.29 2.69
4748 5247 5.739161 GTGCAACTTCACTAGTTCAAACAAG 59.261 40.000 0.00 0.00 45.29 3.16
4750 5249 5.965918 GCAACTTCACTAGTTCAAACAAGAC 59.034 40.000 0.00 0.00 45.29 3.01
4752 5251 7.679638 GCAACTTCACTAGTTCAAACAAGACAT 60.680 37.037 0.00 0.00 45.29 3.06
4753 5252 7.865706 ACTTCACTAGTTCAAACAAGACATT 57.134 32.000 0.00 0.00 31.29 2.71
4755 5254 9.391006 ACTTCACTAGTTCAAACAAGACATTTA 57.609 29.630 0.00 0.00 31.29 1.40
4792 7177 4.277174 TGCTCTGCTTCAGCTATCTACTAC 59.723 45.833 0.00 0.00 42.66 2.73
4793 7178 4.518970 GCTCTGCTTCAGCTATCTACTACT 59.481 45.833 0.00 0.00 42.66 2.57
4798 7183 4.830600 GCTTCAGCTATCTACTACTCCCTT 59.169 45.833 0.00 0.00 38.21 3.95
4802 7187 4.453136 CAGCTATCTACTACTCCCTTCGTC 59.547 50.000 0.00 0.00 0.00 4.20
4803 7188 3.752747 GCTATCTACTACTCCCTTCGTCC 59.247 52.174 0.00 0.00 0.00 4.79
4814 7199 7.731688 ACTACTCCCTTCGTCCCATAATATAAA 59.268 37.037 0.00 0.00 0.00 1.40
4823 7208 7.987649 TCGTCCCATAATATAAAAGCGTTTTT 58.012 30.769 14.50 14.50 39.69 1.94
4824 7209 9.107177 TCGTCCCATAATATAAAAGCGTTTTTA 57.893 29.630 17.75 17.75 41.56 1.52
4825 7210 9.719279 CGTCCCATAATATAAAAGCGTTTTTAA 57.281 29.630 19.04 10.34 40.91 1.52
4833 7218 8.736751 ATATAAAAGCGTTTTTAACACCAGTG 57.263 30.769 19.04 0.00 40.91 3.66
4834 7219 5.952033 TAAAAGCGTTTTTAACACCAGTGT 58.048 33.333 13.88 0.00 40.16 3.55
4835 7220 5.564048 AAAGCGTTTTTAACACCAGTGTA 57.436 34.783 3.43 0.00 44.13 2.90
4836 7221 5.564048 AAGCGTTTTTAACACCAGTGTAA 57.436 34.783 3.43 0.00 44.13 2.41
4837 7222 5.761165 AGCGTTTTTAACACCAGTGTAAT 57.239 34.783 3.43 0.00 44.13 1.89
4838 7223 5.516090 AGCGTTTTTAACACCAGTGTAATG 58.484 37.500 3.43 1.90 44.13 1.90
4839 7224 5.066764 AGCGTTTTTAACACCAGTGTAATGT 59.933 36.000 3.43 0.00 44.13 2.71
4840 7225 5.397240 GCGTTTTTAACACCAGTGTAATGTC 59.603 40.000 3.43 0.00 44.13 3.06
4841 7226 6.487960 CGTTTTTAACACCAGTGTAATGTCA 58.512 36.000 3.43 0.00 44.13 3.58
4842 7227 6.967767 CGTTTTTAACACCAGTGTAATGTCAA 59.032 34.615 3.43 0.00 44.13 3.18
4843 7228 7.485277 CGTTTTTAACACCAGTGTAATGTCAAA 59.515 33.333 3.43 0.00 44.13 2.69
4844 7229 9.141400 GTTTTTAACACCAGTGTAATGTCAAAA 57.859 29.630 3.43 2.67 44.13 2.44
4845 7230 9.706691 TTTTTAACACCAGTGTAATGTCAAAAA 57.293 25.926 3.43 8.22 44.13 1.94
4846 7231 8.690680 TTTAACACCAGTGTAATGTCAAAAAC 57.309 30.769 3.43 0.00 44.13 2.43
4847 7232 4.915704 ACACCAGTGTAATGTCAAAAACG 58.084 39.130 0.54 0.00 42.90 3.60
4848 7233 3.728718 CACCAGTGTAATGTCAAAAACGC 59.271 43.478 0.00 0.00 0.00 4.84
4849 7234 3.630312 ACCAGTGTAATGTCAAAAACGCT 59.370 39.130 0.00 0.00 33.15 5.07
4850 7235 4.219033 CCAGTGTAATGTCAAAAACGCTC 58.781 43.478 0.00 0.00 30.61 5.03
4851 7236 4.024048 CCAGTGTAATGTCAAAAACGCTCT 60.024 41.667 0.00 0.00 30.61 4.09
4852 7237 5.505654 CCAGTGTAATGTCAAAAACGCTCTT 60.506 40.000 0.00 0.00 30.61 2.85
4853 7238 6.293190 CCAGTGTAATGTCAAAAACGCTCTTA 60.293 38.462 0.00 0.00 30.61 2.10
4854 7239 7.298122 CAGTGTAATGTCAAAAACGCTCTTAT 58.702 34.615 0.00 0.00 30.61 1.73
4872 7257 5.891451 TCTTATATTATGATGAGACGGCGG 58.109 41.667 13.24 0.00 0.00 6.13
4873 7258 3.526931 ATATTATGATGAGACGGCGGG 57.473 47.619 13.24 0.00 0.00 6.13
4874 7259 0.321671 ATTATGATGAGACGGCGGGG 59.678 55.000 13.24 0.00 0.00 5.73
4927 7313 5.179452 AGCAACTATTGATTGGTAGTGGT 57.821 39.130 0.00 0.00 36.07 4.16
4930 7316 5.878116 GCAACTATTGATTGGTAGTGGTACA 59.122 40.000 0.00 0.00 31.83 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.568423 GCTGTCAAGAAGAAGAGGATGAAGA 60.568 44.000 0.00 0.00 0.00 2.87
5 6 3.055530 GGCTGTCAAGAAGAAGAGGATGA 60.056 47.826 0.00 0.00 0.00 2.92
8 9 1.625818 GGGCTGTCAAGAAGAAGAGGA 59.374 52.381 0.00 0.00 0.00 3.71
9 10 1.627834 AGGGCTGTCAAGAAGAAGAGG 59.372 52.381 0.00 0.00 0.00 3.69
10 11 2.354604 GGAGGGCTGTCAAGAAGAAGAG 60.355 54.545 0.00 0.00 0.00 2.85
11 12 1.625818 GGAGGGCTGTCAAGAAGAAGA 59.374 52.381 0.00 0.00 0.00 2.87
12 13 1.339535 GGGAGGGCTGTCAAGAAGAAG 60.340 57.143 0.00 0.00 0.00 2.85
13 14 0.693049 GGGAGGGCTGTCAAGAAGAA 59.307 55.000 0.00 0.00 0.00 2.52
14 15 0.178891 AGGGAGGGCTGTCAAGAAGA 60.179 55.000 0.00 0.00 0.00 2.87
15 16 0.251634 GAGGGAGGGCTGTCAAGAAG 59.748 60.000 0.00 0.00 0.00 2.85
16 17 1.201429 GGAGGGAGGGCTGTCAAGAA 61.201 60.000 0.00 0.00 0.00 2.52
17 18 1.613630 GGAGGGAGGGCTGTCAAGA 60.614 63.158 0.00 0.00 0.00 3.02
18 19 2.674220 GGGAGGGAGGGCTGTCAAG 61.674 68.421 0.00 0.00 0.00 3.02
19 20 2.610859 GGGAGGGAGGGCTGTCAA 60.611 66.667 0.00 0.00 0.00 3.18
20 21 4.741239 GGGGAGGGAGGGCTGTCA 62.741 72.222 0.00 0.00 0.00 3.58
21 22 4.741239 TGGGGAGGGAGGGCTGTC 62.741 72.222 0.00 0.00 0.00 3.51
22 23 4.044390 ATGGGGAGGGAGGGCTGT 62.044 66.667 0.00 0.00 0.00 4.40
23 24 3.174265 GATGGGGAGGGAGGGCTG 61.174 72.222 0.00 0.00 0.00 4.85
24 25 4.888325 CGATGGGGAGGGAGGGCT 62.888 72.222 0.00 0.00 0.00 5.19
27 28 2.210144 TTTTGCGATGGGGAGGGAGG 62.210 60.000 0.00 0.00 0.00 4.30
28 29 1.032114 GTTTTGCGATGGGGAGGGAG 61.032 60.000 0.00 0.00 0.00 4.30
29 30 1.001393 GTTTTGCGATGGGGAGGGA 60.001 57.895 0.00 0.00 0.00 4.20
30 31 2.052104 GGTTTTGCGATGGGGAGGG 61.052 63.158 0.00 0.00 0.00 4.30
31 32 2.052104 GGGTTTTGCGATGGGGAGG 61.052 63.158 0.00 0.00 0.00 4.30
32 33 1.304052 TGGGTTTTGCGATGGGGAG 60.304 57.895 0.00 0.00 0.00 4.30
33 34 1.304052 CTGGGTTTTGCGATGGGGA 60.304 57.895 0.00 0.00 0.00 4.81
34 35 1.304052 TCTGGGTTTTGCGATGGGG 60.304 57.895 0.00 0.00 0.00 4.96
35 36 0.893270 TGTCTGGGTTTTGCGATGGG 60.893 55.000 0.00 0.00 0.00 4.00
723 746 4.849329 CAGCCGTCGGAGCCGTAC 62.849 72.222 17.49 5.30 40.74 3.67
765 788 3.804193 GCCTTGTACAGCAGCGCC 61.804 66.667 2.29 0.00 0.00 6.53
1143 1166 3.475774 GCGTCGCCGTACCACTTG 61.476 66.667 5.75 0.00 36.15 3.16
1200 1223 2.047274 ATGTCGGGGAACAGCACG 60.047 61.111 0.00 0.00 31.50 5.34
1266 1289 3.565482 AGAAGCTGAAATGCTGAAACGAA 59.435 39.130 0.00 0.00 43.24 3.85
1283 1306 6.071840 TCCTGAAGTTAGAGTAACAGAGAAGC 60.072 42.308 0.00 0.00 41.07 3.86
1284 1307 7.455641 TCCTGAAGTTAGAGTAACAGAGAAG 57.544 40.000 0.00 0.00 41.07 2.85
1286 1309 8.423906 AAATCCTGAAGTTAGAGTAACAGAGA 57.576 34.615 0.00 0.00 41.07 3.10
1287 1310 8.527810 AGAAATCCTGAAGTTAGAGTAACAGAG 58.472 37.037 0.00 0.00 41.07 3.35
1288 1311 8.307483 CAGAAATCCTGAAGTTAGAGTAACAGA 58.693 37.037 0.00 0.00 45.78 3.41
1289 1312 8.472683 CAGAAATCCTGAAGTTAGAGTAACAG 57.527 38.462 0.00 0.00 45.78 3.16
1304 1327 2.744202 CGTCAAACCCTCAGAAATCCTG 59.256 50.000 0.00 0.00 44.27 3.86
1318 1343 6.657836 AATGCACCTTATAGTACGTCAAAC 57.342 37.500 0.00 0.00 0.00 2.93
1320 1345 5.813672 GGAAATGCACCTTATAGTACGTCAA 59.186 40.000 0.00 0.00 0.00 3.18
1321 1346 5.105269 TGGAAATGCACCTTATAGTACGTCA 60.105 40.000 0.00 0.00 0.00 4.35
1322 1347 5.353938 TGGAAATGCACCTTATAGTACGTC 58.646 41.667 0.00 0.00 0.00 4.34
1323 1348 5.347620 TGGAAATGCACCTTATAGTACGT 57.652 39.130 0.00 0.00 0.00 3.57
1324 1349 6.861065 ATTGGAAATGCACCTTATAGTACG 57.139 37.500 0.00 0.00 0.00 3.67
1326 1351 6.549364 CCCAATTGGAAATGCACCTTATAGTA 59.451 38.462 26.60 0.00 37.39 1.82
1327 1352 5.363580 CCCAATTGGAAATGCACCTTATAGT 59.636 40.000 26.60 0.00 37.39 2.12
1328 1353 5.739935 GCCCAATTGGAAATGCACCTTATAG 60.740 44.000 26.60 4.04 37.39 1.31
1357 1382 0.389166 GCAGAAGACGACACTGAGGG 60.389 60.000 13.61 0.00 34.07 4.30
1363 1388 1.464997 GGGAAATGCAGAAGACGACAC 59.535 52.381 0.00 0.00 0.00 3.67
1435 1460 5.558273 CGCAAAGCAATTTATAGTAGGGACG 60.558 44.000 0.00 0.00 0.00 4.79
1480 1505 5.830000 TCTGCAAATCCATGAGAATTCAG 57.170 39.130 8.44 0.00 36.61 3.02
1535 1560 4.281182 ACAGTAGAGAAAGGAAAAGAGCGA 59.719 41.667 0.00 0.00 0.00 4.93
1588 1617 2.552315 TGTGCAGCTACAAAGGTAAAGC 59.448 45.455 0.00 0.00 0.00 3.51
1639 1668 5.064325 ACTGTCTTTTGTTACCTTGTTCGTC 59.936 40.000 0.00 0.00 0.00 4.20
1688 1717 5.183713 TGACAAGGGCATTTTTCTATCAGTG 59.816 40.000 0.00 0.00 0.00 3.66
1703 1732 2.247358 TGGAAGGAAAATGACAAGGGC 58.753 47.619 0.00 0.00 0.00 5.19
1738 1767 2.324330 GCAACGCCCCCATTTTTGC 61.324 57.895 0.00 0.00 36.14 3.68
1739 1768 2.026520 CGCAACGCCCCCATTTTTG 61.027 57.895 0.00 0.00 0.00 2.44
1828 1862 4.762289 AATTAAGCTCTTGGATCGAGGT 57.238 40.909 0.00 0.00 40.64 3.85
1854 1888 4.944317 TCATATGGGCGTGATTAAACAACA 59.056 37.500 2.13 0.00 0.00 3.33
2123 2159 2.028748 AGATGAAACAGCCACCAAATGC 60.029 45.455 0.00 0.00 0.00 3.56
2159 2195 5.467063 GCAGAGTACAGAACAGTAAAGCTTT 59.533 40.000 17.30 17.30 0.00 3.51
2161 2197 4.039245 TGCAGAGTACAGAACAGTAAAGCT 59.961 41.667 0.00 0.00 0.00 3.74
2162 2198 4.307432 TGCAGAGTACAGAACAGTAAAGC 58.693 43.478 0.00 0.00 0.00 3.51
2163 2199 6.619446 GCAATGCAGAGTACAGAACAGTAAAG 60.619 42.308 0.00 0.00 0.00 1.85
2164 2200 5.179368 GCAATGCAGAGTACAGAACAGTAAA 59.821 40.000 0.00 0.00 0.00 2.01
2247 2289 4.641396 CCACCTGCATATTCTTTCCGATA 58.359 43.478 0.00 0.00 0.00 2.92
2248 2290 3.480470 CCACCTGCATATTCTTTCCGAT 58.520 45.455 0.00 0.00 0.00 4.18
2249 2291 2.917933 CCACCTGCATATTCTTTCCGA 58.082 47.619 0.00 0.00 0.00 4.55
2262 2304 0.681175 ACAATTCCAAAGCCACCTGC 59.319 50.000 0.00 0.00 41.71 4.85
2425 2468 2.176045 TCTCTTGTCGGGTCATTAGCA 58.824 47.619 0.00 0.00 0.00 3.49
2462 2505 4.247267 TGTACCTCACTTTCGGTTACTG 57.753 45.455 0.00 0.00 34.76 2.74
2478 2521 5.091261 AGGTGAACTCTCATCATTGTACC 57.909 43.478 0.00 0.00 34.86 3.34
2696 2743 0.392998 GCCATGGTAGTGGGTCTGTG 60.393 60.000 14.67 0.00 39.73 3.66
2857 2904 3.814842 TCTCGAAGTTACGACACTAACCA 59.185 43.478 0.00 0.00 37.37 3.67
3058 3113 3.206150 CTTGGTAGGCACATGTGGATAC 58.794 50.000 26.55 10.11 0.00 2.24
3177 3235 5.009631 ACAACTTAATGCCAAGATACTGCA 58.990 37.500 0.00 0.00 39.68 4.41
3198 3256 0.871722 GCCGTTGTTGTCTGCATACA 59.128 50.000 0.00 0.00 0.00 2.29
3217 3275 3.914312 TCTAAGTTGGTTCTGAGCGAAG 58.086 45.455 0.00 0.00 30.85 3.79
3244 3302 7.507672 AACGAATAGATTGTAGAAGTTGTCG 57.492 36.000 0.00 0.00 0.00 4.35
3328 3749 5.836024 AACATTAACAACTACTCCCTCCA 57.164 39.130 0.00 0.00 0.00 3.86
3386 3807 7.504926 ACTCCATATTTAGGTACACCTTTCA 57.495 36.000 6.17 0.00 46.09 2.69
3392 3813 9.841295 TTCCAAATACTCCATATTTAGGTACAC 57.159 33.333 0.00 0.00 40.82 2.90
3403 3824 8.159447 CAGGAGATCATTTCCAAATACTCCATA 58.841 37.037 21.15 0.00 40.57 2.74
3404 3825 7.002879 CAGGAGATCATTTCCAAATACTCCAT 58.997 38.462 21.15 11.71 40.57 3.41
3405 3826 6.069440 ACAGGAGATCATTTCCAAATACTCCA 60.069 38.462 21.15 0.00 40.57 3.86
3406 3827 6.261826 CACAGGAGATCATTTCCAAATACTCC 59.738 42.308 16.24 16.24 39.65 3.85
3407 3828 7.050377 TCACAGGAGATCATTTCCAAATACTC 58.950 38.462 0.00 0.00 37.18 2.59
3408 3829 6.962182 TCACAGGAGATCATTTCCAAATACT 58.038 36.000 0.00 0.00 37.18 2.12
3409 3830 7.814264 ATCACAGGAGATCATTTCCAAATAC 57.186 36.000 0.00 0.00 37.18 1.89
3464 3885 3.778954 AGTTTTTCCAGACAGAGGGAG 57.221 47.619 0.00 0.00 34.02 4.30
3466 3887 3.555966 ACAAGTTTTTCCAGACAGAGGG 58.444 45.455 0.00 0.00 0.00 4.30
3467 3888 3.565902 GGACAAGTTTTTCCAGACAGAGG 59.434 47.826 0.00 0.00 0.00 3.69
3468 3889 3.565902 GGGACAAGTTTTTCCAGACAGAG 59.434 47.826 3.22 0.00 33.01 3.35
3469 3890 3.053991 TGGGACAAGTTTTTCCAGACAGA 60.054 43.478 3.22 0.00 31.92 3.41
3470 3891 3.287222 TGGGACAAGTTTTTCCAGACAG 58.713 45.455 3.22 0.00 31.92 3.51
3471 3892 3.374042 TGGGACAAGTTTTTCCAGACA 57.626 42.857 3.22 0.00 31.92 3.41
3479 3900 9.359853 TTGAGAAACAAGCTTGGGACAAGTTTT 62.360 37.037 29.18 17.36 37.48 2.43
3480 3901 7.976078 TTGAGAAACAAGCTTGGGACAAGTTT 61.976 38.462 29.18 18.04 37.48 2.66
3481 3902 6.561626 TTGAGAAACAAGCTTGGGACAAGTT 61.562 40.000 29.18 10.62 37.48 2.66
3482 3903 5.112668 TTGAGAAACAAGCTTGGGACAAGT 61.113 41.667 29.18 4.47 37.48 3.16
3483 3904 3.381272 TTGAGAAACAAGCTTGGGACAAG 59.619 43.478 29.18 3.71 37.48 3.16
3484 3905 3.360867 TTGAGAAACAAGCTTGGGACAA 58.639 40.909 29.18 21.59 37.48 3.18
3485 3906 2.727123 TGAGAAACAAGCTTGGGACA 57.273 45.000 29.18 17.71 0.00 4.02
3486 3907 4.301628 CATTTGAGAAACAAGCTTGGGAC 58.698 43.478 29.18 18.46 39.77 4.46
3487 3908 3.321682 CCATTTGAGAAACAAGCTTGGGA 59.678 43.478 29.18 7.03 39.77 4.37
3488 3909 3.321682 TCCATTTGAGAAACAAGCTTGGG 59.678 43.478 29.18 16.37 39.77 4.12
3489 3910 4.589216 TCCATTTGAGAAACAAGCTTGG 57.411 40.909 29.18 12.28 39.77 3.61
3490 3911 5.535333 ACATCCATTTGAGAAACAAGCTTG 58.465 37.500 24.84 24.84 39.77 4.01
3491 3912 5.796424 ACATCCATTTGAGAAACAAGCTT 57.204 34.783 0.00 0.00 39.77 3.74
3492 3913 6.888632 AGATACATCCATTTGAGAAACAAGCT 59.111 34.615 0.00 0.00 39.77 3.74
3493 3914 7.093322 AGATACATCCATTTGAGAAACAAGC 57.907 36.000 0.00 0.00 39.77 4.01
3494 3915 8.341173 GCTAGATACATCCATTTGAGAAACAAG 58.659 37.037 0.00 0.00 39.77 3.16
3495 3916 7.828717 TGCTAGATACATCCATTTGAGAAACAA 59.171 33.333 0.00 0.00 36.65 2.83
3496 3917 7.280876 GTGCTAGATACATCCATTTGAGAAACA 59.719 37.037 0.00 0.00 0.00 2.83
3497 3918 7.497249 AGTGCTAGATACATCCATTTGAGAAAC 59.503 37.037 0.00 0.00 0.00 2.78
3498 3919 7.568349 AGTGCTAGATACATCCATTTGAGAAA 58.432 34.615 0.00 0.00 0.00 2.52
3499 3920 7.129457 AGTGCTAGATACATCCATTTGAGAA 57.871 36.000 0.00 0.00 0.00 2.87
3500 3921 6.737720 AGTGCTAGATACATCCATTTGAGA 57.262 37.500 0.00 0.00 0.00 3.27
3501 3922 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
3502 3923 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
3503 3924 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
3504 3925 8.486210 TCAAGTTAGTGCTAGATACATCCATTT 58.514 33.333 0.00 0.00 0.00 2.32
3505 3926 8.023021 TCAAGTTAGTGCTAGATACATCCATT 57.977 34.615 0.00 0.00 0.00 3.16
3506 3927 7.603180 TCAAGTTAGTGCTAGATACATCCAT 57.397 36.000 0.00 0.00 0.00 3.41
3507 3928 7.436933 CATCAAGTTAGTGCTAGATACATCCA 58.563 38.462 0.00 0.00 0.00 3.41
3508 3929 6.367422 GCATCAAGTTAGTGCTAGATACATCC 59.633 42.308 0.00 0.00 36.02 3.51
3509 3930 7.151308 AGCATCAAGTTAGTGCTAGATACATC 58.849 38.462 11.30 0.00 46.54 3.06
3510 3931 7.060383 AGCATCAAGTTAGTGCTAGATACAT 57.940 36.000 11.30 0.00 46.54 2.29
3511 3932 6.471233 AGCATCAAGTTAGTGCTAGATACA 57.529 37.500 11.30 0.00 46.54 2.29
3517 3938 7.582667 TGTATCTAGCATCAAGTTAGTGCTA 57.417 36.000 16.22 16.22 46.54 3.49
3519 3940 6.367422 GGATGTATCTAGCATCAAGTTAGTGC 59.633 42.308 9.99 4.02 43.17 4.40
3520 3941 7.436933 TGGATGTATCTAGCATCAAGTTAGTG 58.563 38.462 9.99 0.00 43.17 2.74
3521 3942 7.603180 TGGATGTATCTAGCATCAAGTTAGT 57.397 36.000 9.99 0.00 43.17 2.24
3522 3943 9.499479 AAATGGATGTATCTAGCATCAAGTTAG 57.501 33.333 9.99 0.00 43.17 2.34
3523 3944 9.276590 CAAATGGATGTATCTAGCATCAAGTTA 57.723 33.333 9.99 0.00 43.17 2.24
3524 3945 7.994911 TCAAATGGATGTATCTAGCATCAAGTT 59.005 33.333 9.99 3.16 43.17 2.66
3525 3946 7.512130 TCAAATGGATGTATCTAGCATCAAGT 58.488 34.615 9.99 0.00 43.17 3.16
3526 3947 7.876582 TCTCAAATGGATGTATCTAGCATCAAG 59.123 37.037 9.99 0.77 43.17 3.02
3527 3948 7.738847 TCTCAAATGGATGTATCTAGCATCAA 58.261 34.615 9.99 0.98 43.17 2.57
3528 3949 7.234166 TCTCTCAAATGGATGTATCTAGCATCA 59.766 37.037 9.99 0.00 43.17 3.07
3529 3950 7.545265 GTCTCTCAAATGGATGTATCTAGCATC 59.455 40.741 1.37 1.37 41.30 3.91
3530 3951 7.015974 TGTCTCTCAAATGGATGTATCTAGCAT 59.984 37.037 0.00 0.00 0.00 3.79
3531 3952 6.324770 TGTCTCTCAAATGGATGTATCTAGCA 59.675 38.462 0.00 0.00 0.00 3.49
3532 3953 6.753180 TGTCTCTCAAATGGATGTATCTAGC 58.247 40.000 0.00 0.00 0.00 3.42
3533 3954 7.384660 GCTTGTCTCTCAAATGGATGTATCTAG 59.615 40.741 0.00 0.00 35.48 2.43
3534 3955 7.070447 AGCTTGTCTCTCAAATGGATGTATCTA 59.930 37.037 0.00 0.00 35.48 1.98
3535 3956 6.054295 GCTTGTCTCTCAAATGGATGTATCT 58.946 40.000 0.00 0.00 35.48 1.98
3536 3957 6.054295 AGCTTGTCTCTCAAATGGATGTATC 58.946 40.000 0.00 0.00 35.48 2.24
3537 3958 5.999044 AGCTTGTCTCTCAAATGGATGTAT 58.001 37.500 0.00 0.00 35.48 2.29
3538 3959 5.426689 AGCTTGTCTCTCAAATGGATGTA 57.573 39.130 0.00 0.00 35.48 2.29
3539 3960 4.298103 AGCTTGTCTCTCAAATGGATGT 57.702 40.909 0.00 0.00 35.48 3.06
3540 3961 5.640189 AAAGCTTGTCTCTCAAATGGATG 57.360 39.130 0.00 0.00 35.48 3.51
3541 3962 6.569226 CGAAAAAGCTTGTCTCTCAAATGGAT 60.569 38.462 0.00 0.00 35.48 3.41
3542 3963 5.277974 CGAAAAAGCTTGTCTCTCAAATGGA 60.278 40.000 0.00 0.00 35.48 3.41
3543 3964 4.913924 CGAAAAAGCTTGTCTCTCAAATGG 59.086 41.667 0.00 0.00 35.48 3.16
3544 3965 4.913924 CCGAAAAAGCTTGTCTCTCAAATG 59.086 41.667 0.00 0.00 35.48 2.32
3545 3966 4.821805 TCCGAAAAAGCTTGTCTCTCAAAT 59.178 37.500 0.00 0.00 35.48 2.32
3546 3967 4.196193 TCCGAAAAAGCTTGTCTCTCAAA 58.804 39.130 0.00 0.00 35.48 2.69
3547 3968 3.804036 TCCGAAAAAGCTTGTCTCTCAA 58.196 40.909 0.00 0.00 34.61 3.02
3548 3969 3.469008 TCCGAAAAAGCTTGTCTCTCA 57.531 42.857 0.00 0.00 0.00 3.27
3549 3970 3.187432 CCTTCCGAAAAAGCTTGTCTCTC 59.813 47.826 0.00 0.00 0.00 3.20
3550 3971 3.142174 CCTTCCGAAAAAGCTTGTCTCT 58.858 45.455 0.00 0.00 0.00 3.10
3551 3972 3.139077 TCCTTCCGAAAAAGCTTGTCTC 58.861 45.455 0.00 0.00 0.00 3.36
3552 3973 3.142174 CTCCTTCCGAAAAAGCTTGTCT 58.858 45.455 0.00 0.00 0.00 3.41
3553 3974 2.226674 CCTCCTTCCGAAAAAGCTTGTC 59.773 50.000 0.00 0.00 0.00 3.18
3554 3975 2.230660 CCTCCTTCCGAAAAAGCTTGT 58.769 47.619 0.00 0.00 0.00 3.16
3555 3976 1.541588 CCCTCCTTCCGAAAAAGCTTG 59.458 52.381 0.00 0.00 0.00 4.01
3556 3977 1.423921 TCCCTCCTTCCGAAAAAGCTT 59.576 47.619 0.00 0.00 0.00 3.74
3557 3978 1.003696 CTCCCTCCTTCCGAAAAAGCT 59.996 52.381 0.00 0.00 0.00 3.74
3558 3979 1.271434 ACTCCCTCCTTCCGAAAAAGC 60.271 52.381 0.00 0.00 0.00 3.51
3559 3980 2.861147 ACTCCCTCCTTCCGAAAAAG 57.139 50.000 0.00 0.00 0.00 2.27
3560 3981 3.245441 ACTACTCCCTCCTTCCGAAAAA 58.755 45.455 0.00 0.00 0.00 1.94
3561 3982 2.898662 ACTACTCCCTCCTTCCGAAAA 58.101 47.619 0.00 0.00 0.00 2.29
3562 3983 2.617840 ACTACTCCCTCCTTCCGAAA 57.382 50.000 0.00 0.00 0.00 3.46
3563 3984 3.011032 AGTTACTACTCCCTCCTTCCGAA 59.989 47.826 0.00 0.00 0.00 4.30
3564 3985 2.579860 AGTTACTACTCCCTCCTTCCGA 59.420 50.000 0.00 0.00 0.00 4.55
3565 3986 3.015675 AGTTACTACTCCCTCCTTCCG 57.984 52.381 0.00 0.00 0.00 4.30
3566 3987 4.095211 ACAAGTTACTACTCCCTCCTTCC 58.905 47.826 0.00 0.00 31.99 3.46
3567 3988 6.847421 TTACAAGTTACTACTCCCTCCTTC 57.153 41.667 0.00 0.00 31.99 3.46
3568 3989 7.809880 ATTTACAAGTTACTACTCCCTCCTT 57.190 36.000 0.00 0.00 31.99 3.36
3569 3990 9.503369 AATATTTACAAGTTACTACTCCCTCCT 57.497 33.333 0.00 0.00 31.99 3.69
3891 4315 2.283604 TACTGCACGGCCTCCTGA 60.284 61.111 0.00 0.00 0.00 3.86
3981 4405 3.379445 GGGTTCGCGTCCTCCAGA 61.379 66.667 18.58 0.00 0.00 3.86
4262 4695 6.893958 ACAGTGATTAAACTAAGCAGATCG 57.106 37.500 0.00 0.00 34.38 3.69
4265 4698 7.173218 CCAGAAACAGTGATTAAACTAAGCAGA 59.827 37.037 0.00 0.00 34.38 4.26
4405 4838 7.677041 GCATCAGTCAAAATCGTGTCATATCAA 60.677 37.037 0.00 0.00 0.00 2.57
4414 4847 3.425359 GGTCTGCATCAGTCAAAATCGTG 60.425 47.826 0.00 0.00 32.61 4.35
4474 4908 1.443407 CTGCCCTAGTCCATCACCG 59.557 63.158 0.00 0.00 0.00 4.94
4513 5009 6.686632 GCTGCTACCAGAACTAATCTTACCAT 60.687 42.308 0.00 0.00 41.77 3.55
4532 5028 2.373836 TGGTCCCTTTGTTTAGCTGCTA 59.626 45.455 5.02 5.02 0.00 3.49
4583 5079 8.822652 ATTTGATGAATGAAAAAGACAGGTTC 57.177 30.769 0.00 0.00 0.00 3.62
4624 5120 9.748708 CATGTTCTTTTTAACTCCTCAAATTCA 57.251 29.630 0.00 0.00 0.00 2.57
4625 5121 9.965824 TCATGTTCTTTTTAACTCCTCAAATTC 57.034 29.630 0.00 0.00 0.00 2.17
4628 5124 8.194769 GGTTCATGTTCTTTTTAACTCCTCAAA 58.805 33.333 0.00 0.00 0.00 2.69
4644 5140 7.724305 TTAGAAGTGTGTTAGGTTCATGTTC 57.276 36.000 0.00 0.00 0.00 3.18
4691 5188 7.172019 AGTCAATGATGAATGCCAAAAAGAAAC 59.828 33.333 0.00 0.00 37.30 2.78
4719 5218 3.380479 ACTAGTGAAGTTGCACGCTTA 57.620 42.857 0.00 0.00 43.42 3.09
4748 5247 8.239998 AGAGCAAAAGCAGAGTTAATAAATGTC 58.760 33.333 0.00 0.00 0.00 3.06
4750 5249 7.008992 GCAGAGCAAAAGCAGAGTTAATAAATG 59.991 37.037 0.00 0.00 0.00 2.32
4752 5251 6.207417 AGCAGAGCAAAAGCAGAGTTAATAAA 59.793 34.615 0.00 0.00 0.00 1.40
4753 5252 5.707298 AGCAGAGCAAAAGCAGAGTTAATAA 59.293 36.000 0.00 0.00 0.00 1.40
4755 5254 4.077822 AGCAGAGCAAAAGCAGAGTTAAT 58.922 39.130 0.00 0.00 0.00 1.40
4756 5255 3.480470 AGCAGAGCAAAAGCAGAGTTAA 58.520 40.909 0.00 0.00 0.00 2.01
4762 7147 1.666311 GCTGAAGCAGAGCAAAAGCAG 60.666 52.381 0.00 0.00 41.59 4.24
4773 7158 4.217550 GGGAGTAGTAGATAGCTGAAGCAG 59.782 50.000 4.90 0.00 45.16 4.24
4792 7177 6.371825 GCTTTTATATTATGGGACGAAGGGAG 59.628 42.308 0.00 0.00 0.00 4.30
4793 7178 6.235664 GCTTTTATATTATGGGACGAAGGGA 58.764 40.000 0.00 0.00 0.00 4.20
4798 7183 7.556733 AAAACGCTTTTATATTATGGGACGA 57.443 32.000 0.00 0.00 0.00 4.20
4814 7199 5.564048 TTACACTGGTGTTAAAAACGCTT 57.436 34.783 11.69 0.00 41.83 4.68
4823 7208 6.487960 CGTTTTTGACATTACACTGGTGTTA 58.512 36.000 11.69 3.38 41.83 2.41
4824 7209 5.336744 CGTTTTTGACATTACACTGGTGTT 58.663 37.500 11.69 0.00 41.83 3.32
4825 7210 4.732355 GCGTTTTTGACATTACACTGGTGT 60.732 41.667 11.20 11.20 46.87 4.16
4826 7211 3.728718 GCGTTTTTGACATTACACTGGTG 59.271 43.478 0.00 0.00 0.00 4.17
4827 7212 3.630312 AGCGTTTTTGACATTACACTGGT 59.370 39.130 0.00 0.00 0.00 4.00
4828 7213 4.024048 AGAGCGTTTTTGACATTACACTGG 60.024 41.667 0.00 0.00 0.00 4.00
4829 7214 5.095691 AGAGCGTTTTTGACATTACACTG 57.904 39.130 0.00 0.00 0.00 3.66
4830 7215 5.751243 AAGAGCGTTTTTGACATTACACT 57.249 34.783 0.00 0.00 0.00 3.55
4831 7216 9.769093 AATATAAGAGCGTTTTTGACATTACAC 57.231 29.630 0.00 0.00 0.00 2.90
4842 7227 8.916654 CGTCTCATCATAATATAAGAGCGTTTT 58.083 33.333 0.00 0.00 0.00 2.43
4843 7228 7.542477 CCGTCTCATCATAATATAAGAGCGTTT 59.458 37.037 0.00 0.00 0.00 3.60
4844 7229 7.030165 CCGTCTCATCATAATATAAGAGCGTT 58.970 38.462 0.00 0.00 0.00 4.84
4845 7230 6.556212 CCGTCTCATCATAATATAAGAGCGT 58.444 40.000 0.00 0.00 0.00 5.07
4846 7231 5.457148 GCCGTCTCATCATAATATAAGAGCG 59.543 44.000 0.00 0.00 0.00 5.03
4847 7232 5.457148 CGCCGTCTCATCATAATATAAGAGC 59.543 44.000 0.00 0.00 0.00 4.09
4848 7233 5.974158 CCGCCGTCTCATCATAATATAAGAG 59.026 44.000 0.00 0.00 0.00 2.85
4849 7234 5.163550 CCCGCCGTCTCATCATAATATAAGA 60.164 44.000 0.00 0.00 0.00 2.10
4850 7235 5.043903 CCCGCCGTCTCATCATAATATAAG 58.956 45.833 0.00 0.00 0.00 1.73
4851 7236 4.142026 CCCCGCCGTCTCATCATAATATAA 60.142 45.833 0.00 0.00 0.00 0.98
4852 7237 3.383505 CCCCGCCGTCTCATCATAATATA 59.616 47.826 0.00 0.00 0.00 0.86
4853 7238 2.168521 CCCCGCCGTCTCATCATAATAT 59.831 50.000 0.00 0.00 0.00 1.28
4854 7239 1.548719 CCCCGCCGTCTCATCATAATA 59.451 52.381 0.00 0.00 0.00 0.98
4872 7257 4.302559 AAACACTCTAATCAACTCCCCC 57.697 45.455 0.00 0.00 0.00 5.40
4912 7298 6.437162 AGCAAATTGTACCACTACCAATCAAT 59.563 34.615 0.00 0.00 0.00 2.57
4913 7299 5.772672 AGCAAATTGTACCACTACCAATCAA 59.227 36.000 0.00 0.00 0.00 2.57
4927 7313 4.724399 TCAAGGGTCAGAAGCAAATTGTA 58.276 39.130 0.00 0.00 0.00 2.41
4930 7316 4.405358 TGTTTCAAGGGTCAGAAGCAAATT 59.595 37.500 0.00 0.00 33.09 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.