Multiple sequence alignment - TraesCS3A01G374100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G374100 chr3A 100.000 2843 0 0 1 2843 623819720 623816878 0.000000e+00 5251.0
1 TraesCS3A01G374100 chr3D 90.008 2492 115 54 1 2452 481067156 481064759 0.000000e+00 3099.0
2 TraesCS3A01G374100 chr3B 89.163 2390 127 62 1 2323 641985022 641982698 0.000000e+00 2857.0
3 TraesCS3A01G374100 chr3B 96.717 396 8 2 2449 2843 434311007 434310616 0.000000e+00 654.0
4 TraesCS3A01G374100 chr5B 98.969 388 4 0 2456 2843 448803142 448802755 0.000000e+00 695.0
5 TraesCS3A01G374100 chr5B 85.388 219 18 10 2457 2668 429832877 429833088 6.170000e-52 215.0
6 TraesCS3A01G374100 chr5B 92.035 113 8 1 2731 2843 429833101 429833212 1.050000e-34 158.0
7 TraesCS3A01G374100 chr4B 97.674 387 9 0 2457 2843 33815854 33816240 0.000000e+00 665.0
8 TraesCS3A01G374100 chr2B 96.392 388 10 1 2456 2843 180560257 180560640 1.110000e-178 636.0
9 TraesCS3A01G374100 chr7A 94.643 392 18 2 2452 2843 493458750 493458362 3.130000e-169 604.0
10 TraesCS3A01G374100 chr4A 96.172 209 8 0 2635 2843 695742462 695742254 2.710000e-90 342.0
11 TraesCS3A01G374100 chr4A 88.785 107 10 2 2452 2557 726562328 726562433 2.300000e-26 130.0
12 TraesCS3A01G374100 chrUn 93.506 154 5 2 2449 2601 475790828 475790977 1.020000e-54 224.0
13 TraesCS3A01G374100 chr6B 82.222 225 33 7 2449 2668 651433365 651433143 1.340000e-43 187.0
14 TraesCS3A01G374100 chr6B 100.000 29 0 0 2382 2410 178011964 178011992 1.000000e-03 54.7
15 TraesCS3A01G374100 chr1A 84.459 148 15 6 2521 2664 518956074 518956217 3.820000e-29 139.0
16 TraesCS3A01G374100 chr1A 88.496 113 11 2 2731 2843 518956234 518956344 4.940000e-28 135.0
17 TraesCS3A01G374100 chr7B 89.320 103 8 3 2449 2549 582694322 582694423 2.970000e-25 126.0
18 TraesCS3A01G374100 chr6A 86.207 87 6 6 2351 2435 83063498 83063580 3.900000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G374100 chr3A 623816878 623819720 2842 True 5251 5251 100.000 1 2843 1 chr3A.!!$R1 2842
1 TraesCS3A01G374100 chr3D 481064759 481067156 2397 True 3099 3099 90.008 1 2452 1 chr3D.!!$R1 2451
2 TraesCS3A01G374100 chr3B 641982698 641985022 2324 True 2857 2857 89.163 1 2323 1 chr3B.!!$R2 2322

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 585 0.037160 TGTGCTCACTCATGCCATGT 59.963 50.0 4.31 0.0 0.0 3.21 F
543 588 0.107312 GCTCACTCATGCCATGTCCT 60.107 55.0 4.31 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1640 1711 0.041135 CTCCTCGTCGTATTCGCTCC 60.041 60.0 0.0 0.0 36.96 4.70 R
2109 2208 0.109873 GGATACGACGATACGGCTGG 60.110 60.0 0.0 0.0 37.61 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 106 1.274703 ATGACCTCATTCCCCGCAGT 61.275 55.000 0.00 0.00 31.37 4.40
156 158 6.826741 TCTCGGTAAAAAGGGAAAGATAATGG 59.173 38.462 0.00 0.00 0.00 3.16
157 159 6.486941 TCGGTAAAAAGGGAAAGATAATGGT 58.513 36.000 0.00 0.00 0.00 3.55
158 160 6.949463 TCGGTAAAAAGGGAAAGATAATGGTT 59.051 34.615 0.00 0.00 0.00 3.67
159 161 7.033185 CGGTAAAAAGGGAAAGATAATGGTTG 58.967 38.462 0.00 0.00 0.00 3.77
160 162 7.327975 GGTAAAAAGGGAAAGATAATGGTTGG 58.672 38.462 0.00 0.00 0.00 3.77
161 163 7.038587 GGTAAAAAGGGAAAGATAATGGTTGGT 60.039 37.037 0.00 0.00 0.00 3.67
162 164 7.387265 AAAAAGGGAAAGATAATGGTTGGTT 57.613 32.000 0.00 0.00 0.00 3.67
166 168 5.843969 AGGGAAAGATAATGGTTGGTTGTTT 59.156 36.000 0.00 0.00 0.00 2.83
210 216 5.182950 CCTATCTGTCTAGTGCAGGAGTATG 59.817 48.000 13.99 0.00 34.89 2.39
211 217 3.969553 TCTGTCTAGTGCAGGAGTATGT 58.030 45.455 13.99 0.00 34.89 2.29
212 218 5.112129 TCTGTCTAGTGCAGGAGTATGTA 57.888 43.478 13.99 0.00 34.89 2.29
213 219 5.696030 TCTGTCTAGTGCAGGAGTATGTAT 58.304 41.667 13.99 0.00 34.89 2.29
214 220 6.838382 TCTGTCTAGTGCAGGAGTATGTATA 58.162 40.000 13.99 0.00 34.89 1.47
215 221 7.462590 TCTGTCTAGTGCAGGAGTATGTATAT 58.537 38.462 13.99 0.00 34.89 0.86
216 222 7.391833 TCTGTCTAGTGCAGGAGTATGTATATG 59.608 40.741 13.99 0.00 34.89 1.78
217 223 6.434340 TGTCTAGTGCAGGAGTATGTATATGG 59.566 42.308 0.00 0.00 0.00 2.74
218 224 6.434652 GTCTAGTGCAGGAGTATGTATATGGT 59.565 42.308 0.00 0.00 0.00 3.55
219 225 7.010771 TCTAGTGCAGGAGTATGTATATGGTT 58.989 38.462 0.00 0.00 0.00 3.67
220 226 6.500589 AGTGCAGGAGTATGTATATGGTTT 57.499 37.500 0.00 0.00 0.00 3.27
221 227 6.525629 AGTGCAGGAGTATGTATATGGTTTC 58.474 40.000 0.00 0.00 0.00 2.78
222 228 6.099701 AGTGCAGGAGTATGTATATGGTTTCA 59.900 38.462 0.00 0.00 0.00 2.69
223 229 6.936900 GTGCAGGAGTATGTATATGGTTTCAT 59.063 38.462 0.00 0.00 37.40 2.57
224 230 6.936335 TGCAGGAGTATGTATATGGTTTCATG 59.064 38.462 0.00 0.00 34.96 3.07
225 231 6.128172 GCAGGAGTATGTATATGGTTTCATGC 60.128 42.308 0.00 0.00 34.66 4.06
226 232 7.164122 CAGGAGTATGTATATGGTTTCATGCT 58.836 38.462 0.00 0.00 36.34 3.79
227 233 7.118825 CAGGAGTATGTATATGGTTTCATGCTG 59.881 40.741 0.00 0.00 34.49 4.41
228 234 6.936900 GGAGTATGTATATGGTTTCATGCTGT 59.063 38.462 0.00 0.00 34.49 4.40
234 240 7.334858 TGTATATGGTTTCATGCTGTAACTGA 58.665 34.615 0.00 0.00 34.96 3.41
247 253 4.383118 GCTGTAACTGATCCCATGTACTGT 60.383 45.833 0.00 0.00 0.00 3.55
249 255 6.463049 GCTGTAACTGATCCCATGTACTGTAT 60.463 42.308 0.00 0.00 0.00 2.29
250 256 6.816136 TGTAACTGATCCCATGTACTGTATG 58.184 40.000 0.00 0.00 0.00 2.39
251 257 4.342862 ACTGATCCCATGTACTGTATGC 57.657 45.455 0.00 0.00 0.00 3.14
253 259 5.147767 ACTGATCCCATGTACTGTATGCTA 58.852 41.667 0.00 0.00 0.00 3.49
254 260 5.011125 ACTGATCCCATGTACTGTATGCTAC 59.989 44.000 0.00 0.00 0.00 3.58
255 261 5.147767 TGATCCCATGTACTGTATGCTACT 58.852 41.667 0.00 0.00 0.00 2.57
256 262 4.937201 TCCCATGTACTGTATGCTACTG 57.063 45.455 0.00 0.00 0.00 2.74
257 263 3.069586 TCCCATGTACTGTATGCTACTGC 59.930 47.826 0.00 0.00 40.20 4.40
258 264 3.393800 CCATGTACTGTATGCTACTGCC 58.606 50.000 0.00 0.00 38.71 4.85
259 265 3.070159 CCATGTACTGTATGCTACTGCCT 59.930 47.826 0.00 0.00 38.71 4.75
260 266 3.801114 TGTACTGTATGCTACTGCCTG 57.199 47.619 0.00 0.00 38.71 4.85
262 268 1.198713 ACTGTATGCTACTGCCTGCT 58.801 50.000 0.00 0.00 38.71 4.24
264 270 1.938577 CTGTATGCTACTGCCTGCTTG 59.061 52.381 0.00 0.00 38.71 4.01
265 271 1.554617 TGTATGCTACTGCCTGCTTGA 59.445 47.619 0.00 0.00 38.71 3.02
266 272 2.027285 TGTATGCTACTGCCTGCTTGAA 60.027 45.455 0.00 0.00 38.71 2.69
267 273 1.457346 ATGCTACTGCCTGCTTGAAC 58.543 50.000 0.00 0.00 38.71 3.18
272 301 2.877043 ACTGCCTGCTTGAACTTTTG 57.123 45.000 0.00 0.00 0.00 2.44
320 349 3.673484 CTGCAGGCCCAACCGTTG 61.673 66.667 5.57 4.12 46.52 4.10
395 439 4.098196 GGCTTAACTAGAAGACAGATCGGT 59.902 45.833 0.00 0.00 34.29 4.69
490 534 1.201429 AAATGGGCTCTGTCGGAGGT 61.201 55.000 10.75 0.00 42.08 3.85
491 535 1.617947 AATGGGCTCTGTCGGAGGTC 61.618 60.000 10.75 0.00 42.08 3.85
492 536 2.363147 GGGCTCTGTCGGAGGTCT 60.363 66.667 10.75 0.00 42.08 3.85
537 582 1.673337 GCTGTGCTCACTCATGCCA 60.673 57.895 1.47 0.00 0.00 4.92
538 583 1.030488 GCTGTGCTCACTCATGCCAT 61.030 55.000 1.47 0.00 0.00 4.40
539 584 0.733150 CTGTGCTCACTCATGCCATG 59.267 55.000 0.00 0.00 0.00 3.66
540 585 0.037160 TGTGCTCACTCATGCCATGT 59.963 50.000 4.31 0.00 0.00 3.21
543 588 0.107312 GCTCACTCATGCCATGTCCT 60.107 55.000 4.31 0.00 0.00 3.85
544 589 1.664873 CTCACTCATGCCATGTCCTG 58.335 55.000 4.31 0.00 0.00 3.86
545 590 1.208776 CTCACTCATGCCATGTCCTGA 59.791 52.381 4.31 3.53 0.00 3.86
547 592 1.741706 CACTCATGCCATGTCCTGAAC 59.258 52.381 4.31 0.00 0.00 3.18
548 593 1.632409 ACTCATGCCATGTCCTGAACT 59.368 47.619 4.31 0.00 0.00 3.01
549 594 2.286872 CTCATGCCATGTCCTGAACTC 58.713 52.381 4.31 0.00 0.00 3.01
550 595 1.065199 TCATGCCATGTCCTGAACTCC 60.065 52.381 4.31 0.00 0.00 3.85
551 596 1.064906 CATGCCATGTCCTGAACTCCT 60.065 52.381 0.00 0.00 0.00 3.69
552 597 0.325933 TGCCATGTCCTGAACTCCTG 59.674 55.000 0.00 0.00 0.00 3.86
627 672 4.579340 AGGAGATTTTACAGCGATCGTCTA 59.421 41.667 17.81 0.75 0.00 2.59
642 687 5.969435 CGATCGTCTACTGCACTGTTAATAA 59.031 40.000 7.03 0.00 0.00 1.40
649 694 7.009723 GTCTACTGCACTGTTAATAAGCTTCTC 59.990 40.741 0.00 0.00 0.00 2.87
659 704 9.553064 CTGTTAATAAGCTTCTCATGGAGTATT 57.447 33.333 0.00 0.00 0.00 1.89
761 809 2.206750 TGGAGTTCGTTTCGTTTCAGG 58.793 47.619 0.00 0.00 0.00 3.86
849 903 2.758423 CCACCTCCGAATTTTTAAGGGG 59.242 50.000 0.00 0.00 0.00 4.79
987 1058 1.135575 GTGCGTACTACGTAGCTGGTT 60.136 52.381 22.40 5.20 44.73 3.67
988 1059 1.541147 TGCGTACTACGTAGCTGGTTT 59.459 47.619 22.40 4.46 44.73 3.27
989 1060 1.916000 GCGTACTACGTAGCTGGTTTG 59.084 52.381 22.40 6.82 44.73 2.93
991 1062 2.265683 GTACTACGTAGCTGGTTTGGC 58.734 52.381 22.40 0.00 0.00 4.52
992 1063 0.682852 ACTACGTAGCTGGTTTGGCA 59.317 50.000 22.40 0.00 0.00 4.92
993 1064 1.071071 ACTACGTAGCTGGTTTGGCAA 59.929 47.619 22.40 0.00 0.00 4.52
994 1065 1.463444 CTACGTAGCTGGTTTGGCAAC 59.537 52.381 10.14 0.00 0.00 4.17
1635 1706 1.153168 GGGCAAGAAGATGGCGCTA 60.153 57.895 7.64 0.00 46.12 4.26
1640 1711 0.755686 AAGAAGATGGCGCTAGAGGG 59.244 55.000 7.64 0.00 0.00 4.30
1677 1748 2.202676 GAGAAGGAGGCGAGCGTG 60.203 66.667 0.00 0.00 0.00 5.34
1803 1874 1.134175 GAGGAGAAGAAGCACGAGAGG 59.866 57.143 0.00 0.00 0.00 3.69
1810 1881 3.288308 AAGCACGAGAGGCACGAGG 62.288 63.158 0.00 0.00 34.70 4.63
1948 2046 4.147449 CTCGAGCCGTGCCCATGA 62.147 66.667 0.00 0.00 0.00 3.07
1949 2047 3.451556 CTCGAGCCGTGCCCATGAT 62.452 63.158 0.00 0.00 0.00 2.45
2026 2125 2.666022 GCGGGTTTTGGAATGAATTTCG 59.334 45.455 0.00 0.00 34.98 3.46
2073 2172 1.811266 CTTGGGATCGTGGTGCTCG 60.811 63.158 0.00 0.00 0.00 5.03
2077 2176 2.579787 GATCGTGGTGCTCGACGG 60.580 66.667 20.46 5.26 43.84 4.79
2095 2194 1.474879 CGGACCCAACTTGTTGTGTTT 59.525 47.619 11.82 0.00 0.00 2.83
2098 2197 3.930229 GGACCCAACTTGTTGTGTTTTTC 59.070 43.478 11.82 0.00 0.00 2.29
2109 2208 2.243407 TGTGTTTTTCGTTGCGTGTTC 58.757 42.857 0.00 0.00 0.00 3.18
2121 2220 1.153901 CGTGTTCCAGCCGTATCGT 60.154 57.895 0.00 0.00 0.00 3.73
2122 2221 1.138047 CGTGTTCCAGCCGTATCGTC 61.138 60.000 0.00 0.00 0.00 4.20
2124 2223 1.138247 GTTCCAGCCGTATCGTCGT 59.862 57.895 0.00 0.00 0.00 4.34
2127 2226 0.870393 TCCAGCCGTATCGTCGTATC 59.130 55.000 0.00 0.00 0.00 2.24
2128 2227 0.109873 CCAGCCGTATCGTCGTATCC 60.110 60.000 0.00 0.00 0.00 2.59
2132 2231 1.614385 CCGTATCGTCGTATCCATGC 58.386 55.000 0.00 0.00 0.00 4.06
2151 2250 3.354089 GCATGGGCAATGTACATGTAC 57.646 47.619 25.99 25.99 42.89 2.90
2152 2251 2.687425 GCATGGGCAATGTACATGTACA 59.313 45.455 34.35 34.35 43.99 2.90
2210 2309 2.021722 CACACAAGGTGTCCCGTTG 58.978 57.895 0.00 0.00 43.92 4.10
2254 2357 0.729116 CAAGGTCCATGTGATGCGTC 59.271 55.000 0.00 0.00 0.00 5.19
2323 2426 5.363580 CCATATGCCATGGTTTAGGAGTTTT 59.636 40.000 14.67 0.00 34.56 2.43
2324 2427 6.549364 CCATATGCCATGGTTTAGGAGTTTTA 59.451 38.462 14.67 0.00 34.56 1.52
2325 2428 7.233348 CCATATGCCATGGTTTAGGAGTTTTAT 59.767 37.037 14.67 0.00 34.56 1.40
2326 2429 5.913137 TGCCATGGTTTAGGAGTTTTATG 57.087 39.130 14.67 0.00 0.00 1.90
2327 2430 5.575157 TGCCATGGTTTAGGAGTTTTATGA 58.425 37.500 14.67 0.00 0.00 2.15
2328 2431 5.652014 TGCCATGGTTTAGGAGTTTTATGAG 59.348 40.000 14.67 0.00 0.00 2.90
2329 2432 5.652452 GCCATGGTTTAGGAGTTTTATGAGT 59.348 40.000 14.67 0.00 0.00 3.41
2330 2433 6.152831 GCCATGGTTTAGGAGTTTTATGAGTT 59.847 38.462 14.67 0.00 0.00 3.01
2331 2434 7.309805 GCCATGGTTTAGGAGTTTTATGAGTTT 60.310 37.037 14.67 0.00 0.00 2.66
2343 2446 6.204108 AGTTTTATGAGTTTCGGACGTGATTT 59.796 34.615 0.00 0.00 0.00 2.17
2349 2452 0.899720 TTCGGACGTGATTTAGGGCT 59.100 50.000 0.00 0.00 0.00 5.19
2356 2459 4.879545 GGACGTGATTTAGGGCTATTCAAA 59.120 41.667 0.00 0.00 0.00 2.69
2367 2470 9.762381 TTTAGGGCTATTCAAAAGGAATTCTAA 57.238 29.630 5.23 0.00 43.76 2.10
2417 2520 7.060421 TCTTAGGAATTTTTCTGTGTTGGTCT 58.940 34.615 0.00 0.00 0.00 3.85
2426 2529 6.522625 TTTCTGTGTTGGTCTTTTGATTCA 57.477 33.333 0.00 0.00 0.00 2.57
2436 2539 6.493166 TGGTCTTTTGATTCATAGGATTGGT 58.507 36.000 0.00 0.00 0.00 3.67
2441 2544 5.464588 TTGATTCATAGGATTGGTTCCCA 57.535 39.130 0.00 0.00 46.81 4.37
2443 2546 6.778542 TGATTCATAGGATTGGTTCCCATA 57.221 37.500 0.00 0.00 46.81 2.74
2444 2547 7.347319 TGATTCATAGGATTGGTTCCCATAT 57.653 36.000 0.00 0.00 46.81 1.78
2445 2548 7.177184 TGATTCATAGGATTGGTTCCCATATG 58.823 38.462 0.00 0.00 46.81 1.78
2447 2550 6.778542 TCATAGGATTGGTTCCCATATGAA 57.221 37.500 3.65 0.00 46.81 2.57
2451 2554 8.873144 CATAGGATTGGTTCCCATATGAATTTT 58.127 33.333 3.65 0.00 46.81 1.82
2452 2555 7.754091 AGGATTGGTTCCCATATGAATTTTT 57.246 32.000 3.65 0.00 46.81 1.94
2476 2579 9.847224 TTTTTAGGGATTGTCTATTCTACATCC 57.153 33.333 0.00 0.00 0.00 3.51
2477 2580 5.730296 AGGGATTGTCTATTCTACATCCG 57.270 43.478 0.00 0.00 31.11 4.18
2478 2581 4.528596 AGGGATTGTCTATTCTACATCCGG 59.471 45.833 0.00 0.00 31.11 5.14
2479 2582 4.527038 GGGATTGTCTATTCTACATCCGGA 59.473 45.833 6.61 6.61 31.11 5.14
2480 2583 5.187967 GGGATTGTCTATTCTACATCCGGAT 59.812 44.000 12.38 12.38 31.11 4.18
2481 2584 6.102663 GGATTGTCTATTCTACATCCGGATG 58.897 44.000 37.23 37.23 44.15 3.51
2482 2585 6.071334 GGATTGTCTATTCTACATCCGGATGA 60.071 42.308 43.42 27.52 41.20 2.92
2483 2586 6.724893 TTGTCTATTCTACATCCGGATGAA 57.275 37.500 43.42 29.80 41.20 2.57
2484 2587 6.724893 TGTCTATTCTACATCCGGATGAAA 57.275 37.500 43.42 32.20 41.20 2.69
2485 2588 7.303182 TGTCTATTCTACATCCGGATGAAAT 57.697 36.000 43.42 34.87 41.20 2.17
2486 2589 7.378966 TGTCTATTCTACATCCGGATGAAATC 58.621 38.462 43.42 25.80 44.55 2.17
2487 2590 7.233553 TGTCTATTCTACATCCGGATGAAATCT 59.766 37.037 43.42 26.54 44.71 2.40
2488 2591 8.740906 GTCTATTCTACATCCGGATGAAATCTA 58.259 37.037 43.42 26.26 44.71 1.98
2489 2592 9.309224 TCTATTCTACATCCGGATGAAATCTAA 57.691 33.333 43.42 27.58 44.71 2.10
2493 2596 9.929180 TTCTACATCCGGATGAAATCTAATTAG 57.071 33.333 43.42 29.94 44.71 1.73
2494 2597 8.035394 TCTACATCCGGATGAAATCTAATTAGC 58.965 37.037 43.42 0.00 44.71 3.09
2495 2598 6.773638 ACATCCGGATGAAATCTAATTAGCT 58.226 36.000 43.42 18.41 44.71 3.32
2496 2599 7.227156 ACATCCGGATGAAATCTAATTAGCTT 58.773 34.615 43.42 17.78 44.71 3.74
2497 2600 7.721399 ACATCCGGATGAAATCTAATTAGCTTT 59.279 33.333 43.42 17.42 44.71 3.51
2498 2601 7.730364 TCCGGATGAAATCTAATTAGCTTTC 57.270 36.000 24.94 24.94 44.71 2.62
2499 2602 7.279615 TCCGGATGAAATCTAATTAGCTTTCA 58.720 34.615 31.40 31.40 46.18 2.69
2530 2633 5.860941 TTTTAGCCAACCAAAGAATGACA 57.139 34.783 0.00 0.00 0.00 3.58
2531 2634 5.860941 TTTAGCCAACCAAAGAATGACAA 57.139 34.783 0.00 0.00 0.00 3.18
2532 2635 5.452078 TTAGCCAACCAAAGAATGACAAG 57.548 39.130 0.00 0.00 0.00 3.16
2533 2636 3.299503 AGCCAACCAAAGAATGACAAGT 58.700 40.909 0.00 0.00 0.00 3.16
2534 2637 3.068590 AGCCAACCAAAGAATGACAAGTG 59.931 43.478 0.00 0.00 0.00 3.16
2535 2638 3.181476 GCCAACCAAAGAATGACAAGTGT 60.181 43.478 0.00 0.00 0.00 3.55
2536 2639 4.610945 CCAACCAAAGAATGACAAGTGTC 58.389 43.478 4.43 4.43 44.97 3.67
2537 2640 4.339247 CCAACCAAAGAATGACAAGTGTCT 59.661 41.667 12.43 0.00 44.99 3.41
2538 2641 5.506317 CCAACCAAAGAATGACAAGTGTCTC 60.506 44.000 12.43 3.23 44.99 3.36
2539 2642 4.137543 ACCAAAGAATGACAAGTGTCTCC 58.862 43.478 12.43 2.46 44.99 3.71
2540 2643 4.141390 ACCAAAGAATGACAAGTGTCTCCT 60.141 41.667 12.43 4.48 44.99 3.69
2541 2644 4.214971 CCAAAGAATGACAAGTGTCTCCTG 59.785 45.833 12.43 4.05 44.99 3.86
2542 2645 4.696479 AAGAATGACAAGTGTCTCCTGT 57.304 40.909 12.43 0.00 44.99 4.00
2543 2646 4.264460 AGAATGACAAGTGTCTCCTGTC 57.736 45.455 12.43 0.00 44.99 3.51
2544 2647 3.007398 AGAATGACAAGTGTCTCCTGTCC 59.993 47.826 12.43 0.00 44.99 4.02
2545 2648 1.048601 TGACAAGTGTCTCCTGTCCC 58.951 55.000 12.43 0.00 44.99 4.46
2546 2649 0.038159 GACAAGTGTCTCCTGTCCCG 60.038 60.000 4.15 0.00 41.65 5.14
2547 2650 0.759436 ACAAGTGTCTCCTGTCCCGT 60.759 55.000 0.00 0.00 0.00 5.28
2548 2651 0.319900 CAAGTGTCTCCTGTCCCGTG 60.320 60.000 0.00 0.00 0.00 4.94
2549 2652 0.759436 AAGTGTCTCCTGTCCCGTGT 60.759 55.000 0.00 0.00 0.00 4.49
2550 2653 1.179814 AGTGTCTCCTGTCCCGTGTC 61.180 60.000 0.00 0.00 0.00 3.67
2551 2654 1.153061 TGTCTCCTGTCCCGTGTCT 59.847 57.895 0.00 0.00 0.00 3.41
2552 2655 0.894184 TGTCTCCTGTCCCGTGTCTC 60.894 60.000 0.00 0.00 0.00 3.36
2553 2656 0.609681 GTCTCCTGTCCCGTGTCTCT 60.610 60.000 0.00 0.00 0.00 3.10
2554 2657 0.112606 TCTCCTGTCCCGTGTCTCTT 59.887 55.000 0.00 0.00 0.00 2.85
2555 2658 0.244994 CTCCTGTCCCGTGTCTCTTG 59.755 60.000 0.00 0.00 0.00 3.02
2556 2659 0.469331 TCCTGTCCCGTGTCTCTTGT 60.469 55.000 0.00 0.00 0.00 3.16
2557 2660 0.393077 CCTGTCCCGTGTCTCTTGTT 59.607 55.000 0.00 0.00 0.00 2.83
2558 2661 1.202651 CCTGTCCCGTGTCTCTTGTTT 60.203 52.381 0.00 0.00 0.00 2.83
2559 2662 1.867233 CTGTCCCGTGTCTCTTGTTTG 59.133 52.381 0.00 0.00 0.00 2.93
2560 2663 0.586802 GTCCCGTGTCTCTTGTTTGC 59.413 55.000 0.00 0.00 0.00 3.68
2561 2664 0.468226 TCCCGTGTCTCTTGTTTGCT 59.532 50.000 0.00 0.00 0.00 3.91
2562 2665 1.134220 TCCCGTGTCTCTTGTTTGCTT 60.134 47.619 0.00 0.00 0.00 3.91
2563 2666 1.676006 CCCGTGTCTCTTGTTTGCTTT 59.324 47.619 0.00 0.00 0.00 3.51
2564 2667 2.099098 CCCGTGTCTCTTGTTTGCTTTT 59.901 45.455 0.00 0.00 0.00 2.27
2565 2668 3.363178 CCGTGTCTCTTGTTTGCTTTTC 58.637 45.455 0.00 0.00 0.00 2.29
2566 2669 3.065371 CCGTGTCTCTTGTTTGCTTTTCT 59.935 43.478 0.00 0.00 0.00 2.52
2567 2670 4.031028 CGTGTCTCTTGTTTGCTTTTCTG 58.969 43.478 0.00 0.00 0.00 3.02
2568 2671 4.437390 CGTGTCTCTTGTTTGCTTTTCTGT 60.437 41.667 0.00 0.00 0.00 3.41
2569 2672 5.030936 GTGTCTCTTGTTTGCTTTTCTGTC 58.969 41.667 0.00 0.00 0.00 3.51
2570 2673 4.096382 TGTCTCTTGTTTGCTTTTCTGTCC 59.904 41.667 0.00 0.00 0.00 4.02
2571 2674 3.632145 TCTCTTGTTTGCTTTTCTGTCCC 59.368 43.478 0.00 0.00 0.00 4.46
2572 2675 2.357637 TCTTGTTTGCTTTTCTGTCCCG 59.642 45.455 0.00 0.00 0.00 5.14
2573 2676 0.383949 TGTTTGCTTTTCTGTCCCGC 59.616 50.000 0.00 0.00 0.00 6.13
2574 2677 0.668535 GTTTGCTTTTCTGTCCCGCT 59.331 50.000 0.00 0.00 0.00 5.52
2575 2678 1.067060 GTTTGCTTTTCTGTCCCGCTT 59.933 47.619 0.00 0.00 0.00 4.68
2576 2679 1.398692 TTGCTTTTCTGTCCCGCTTT 58.601 45.000 0.00 0.00 0.00 3.51
2577 2680 1.398692 TGCTTTTCTGTCCCGCTTTT 58.601 45.000 0.00 0.00 0.00 2.27
2578 2681 2.577700 TGCTTTTCTGTCCCGCTTTTA 58.422 42.857 0.00 0.00 0.00 1.52
2579 2682 3.153919 TGCTTTTCTGTCCCGCTTTTAT 58.846 40.909 0.00 0.00 0.00 1.40
2580 2683 4.328536 TGCTTTTCTGTCCCGCTTTTATA 58.671 39.130 0.00 0.00 0.00 0.98
2581 2684 4.762765 TGCTTTTCTGTCCCGCTTTTATAA 59.237 37.500 0.00 0.00 0.00 0.98
2582 2685 5.241949 TGCTTTTCTGTCCCGCTTTTATAAA 59.758 36.000 0.00 0.00 0.00 1.40
2583 2686 6.071616 TGCTTTTCTGTCCCGCTTTTATAAAT 60.072 34.615 0.00 0.00 0.00 1.40
2584 2687 7.121463 TGCTTTTCTGTCCCGCTTTTATAAATA 59.879 33.333 0.00 0.00 0.00 1.40
2585 2688 7.644157 GCTTTTCTGTCCCGCTTTTATAAATAG 59.356 37.037 0.00 1.59 0.00 1.73
2586 2689 8.795842 TTTTCTGTCCCGCTTTTATAAATAGA 57.204 30.769 0.00 0.00 0.00 1.98
2587 2690 7.781548 TTCTGTCCCGCTTTTATAAATAGAC 57.218 36.000 0.00 3.40 0.00 2.59
2588 2691 7.120923 TCTGTCCCGCTTTTATAAATAGACT 57.879 36.000 0.00 0.00 0.00 3.24
2589 2692 8.241497 TCTGTCCCGCTTTTATAAATAGACTA 57.759 34.615 0.00 0.00 0.00 2.59
2590 2693 8.698210 TCTGTCCCGCTTTTATAAATAGACTAA 58.302 33.333 0.00 0.00 0.00 2.24
2591 2694 8.652810 TGTCCCGCTTTTATAAATAGACTAAC 57.347 34.615 0.00 0.00 0.00 2.34
2592 2695 7.436080 TGTCCCGCTTTTATAAATAGACTAACG 59.564 37.037 0.00 0.00 0.00 3.18
2593 2696 6.925165 TCCCGCTTTTATAAATAGACTAACGG 59.075 38.462 0.00 0.04 0.00 4.44
2594 2697 6.146673 CCCGCTTTTATAAATAGACTAACGGG 59.853 42.308 10.30 10.30 46.73 5.28
2595 2698 6.703165 CCGCTTTTATAAATAGACTAACGGGT 59.297 38.462 0.00 0.00 0.00 5.28
2596 2699 7.095899 CCGCTTTTATAAATAGACTAACGGGTC 60.096 40.741 0.00 0.00 36.56 4.46
2597 2700 7.650903 CGCTTTTATAAATAGACTAACGGGTCT 59.349 37.037 11.47 11.47 46.68 3.85
2613 2716 3.606595 GGTCTACACCCCAACTTCTAC 57.393 52.381 0.00 0.00 36.54 2.59
2614 2717 2.901839 GGTCTACACCCCAACTTCTACA 59.098 50.000 0.00 0.00 36.54 2.74
2615 2718 3.325716 GGTCTACACCCCAACTTCTACAA 59.674 47.826 0.00 0.00 36.54 2.41
2616 2719 4.313282 GTCTACACCCCAACTTCTACAAC 58.687 47.826 0.00 0.00 0.00 3.32
2617 2720 2.651382 ACACCCCAACTTCTACAACC 57.349 50.000 0.00 0.00 0.00 3.77
2618 2721 1.144298 ACACCCCAACTTCTACAACCC 59.856 52.381 0.00 0.00 0.00 4.11
2619 2722 0.399075 ACCCCAACTTCTACAACCCG 59.601 55.000 0.00 0.00 0.00 5.28
2620 2723 0.322187 CCCCAACTTCTACAACCCGG 60.322 60.000 0.00 0.00 0.00 5.73
2621 2724 0.688487 CCCAACTTCTACAACCCGGA 59.312 55.000 0.73 0.00 0.00 5.14
2622 2725 1.609841 CCCAACTTCTACAACCCGGAC 60.610 57.143 0.73 0.00 0.00 4.79
2623 2726 1.071071 CCAACTTCTACAACCCGGACA 59.929 52.381 0.73 0.00 0.00 4.02
2624 2727 2.413837 CAACTTCTACAACCCGGACAG 58.586 52.381 0.73 0.00 0.00 3.51
2625 2728 2.005370 ACTTCTACAACCCGGACAGA 57.995 50.000 0.73 0.00 0.00 3.41
2626 2729 2.322658 ACTTCTACAACCCGGACAGAA 58.677 47.619 0.73 3.05 0.00 3.02
2627 2730 2.299297 ACTTCTACAACCCGGACAGAAG 59.701 50.000 19.80 19.80 44.96 2.85
2628 2731 2.297698 TCTACAACCCGGACAGAAGA 57.702 50.000 0.73 0.00 0.00 2.87
2629 2732 2.168496 TCTACAACCCGGACAGAAGAG 58.832 52.381 0.73 0.00 0.00 2.85
2630 2733 0.606604 TACAACCCGGACAGAAGAGC 59.393 55.000 0.73 0.00 0.00 4.09
2631 2734 1.371183 CAACCCGGACAGAAGAGCA 59.629 57.895 0.73 0.00 0.00 4.26
2632 2735 0.671781 CAACCCGGACAGAAGAGCAG 60.672 60.000 0.73 0.00 0.00 4.24
2633 2736 2.125350 CCCGGACAGAAGAGCAGC 60.125 66.667 0.73 0.00 0.00 5.25
2634 2737 2.654079 CCCGGACAGAAGAGCAGCT 61.654 63.158 0.73 0.00 0.00 4.24
2635 2738 1.323271 CCCGGACAGAAGAGCAGCTA 61.323 60.000 0.73 0.00 0.00 3.32
2636 2739 0.532573 CCGGACAGAAGAGCAGCTAA 59.467 55.000 0.00 0.00 0.00 3.09
2637 2740 1.066858 CCGGACAGAAGAGCAGCTAAA 60.067 52.381 0.00 0.00 0.00 1.85
2638 2741 2.612972 CCGGACAGAAGAGCAGCTAAAA 60.613 50.000 0.00 0.00 0.00 1.52
2639 2742 3.067106 CGGACAGAAGAGCAGCTAAAAA 58.933 45.455 0.00 0.00 0.00 1.94
2659 2762 6.729690 AAAAATGGAGATCAAAGAACCACA 57.270 33.333 0.00 0.00 33.38 4.17
2660 2763 6.729690 AAAATGGAGATCAAAGAACCACAA 57.270 33.333 0.00 0.00 33.38 3.33
2661 2764 5.712152 AATGGAGATCAAAGAACCACAAC 57.288 39.130 0.00 0.00 33.38 3.32
2662 2765 3.138304 TGGAGATCAAAGAACCACAACG 58.862 45.455 0.00 0.00 0.00 4.10
2663 2766 3.181459 TGGAGATCAAAGAACCACAACGA 60.181 43.478 0.00 0.00 0.00 3.85
2664 2767 4.003648 GGAGATCAAAGAACCACAACGAT 58.996 43.478 0.00 0.00 0.00 3.73
2665 2768 5.175859 GGAGATCAAAGAACCACAACGATA 58.824 41.667 0.00 0.00 0.00 2.92
2666 2769 5.063564 GGAGATCAAAGAACCACAACGATAC 59.936 44.000 0.00 0.00 0.00 2.24
2667 2770 5.547465 AGATCAAAGAACCACAACGATACA 58.453 37.500 0.00 0.00 0.00 2.29
2668 2771 5.995282 AGATCAAAGAACCACAACGATACAA 59.005 36.000 0.00 0.00 0.00 2.41
2669 2772 5.412526 TCAAAGAACCACAACGATACAAC 57.587 39.130 0.00 0.00 0.00 3.32
2670 2773 4.025563 TCAAAGAACCACAACGATACAACG 60.026 41.667 0.00 0.00 39.31 4.10
2671 2774 3.374220 AGAACCACAACGATACAACGA 57.626 42.857 0.00 0.00 37.03 3.85
2672 2775 3.921677 AGAACCACAACGATACAACGAT 58.078 40.909 0.00 0.00 37.03 3.73
2673 2776 5.063180 AGAACCACAACGATACAACGATA 57.937 39.130 0.00 0.00 37.03 2.92
2674 2777 4.860907 AGAACCACAACGATACAACGATAC 59.139 41.667 0.00 0.00 37.03 2.24
2675 2778 4.177165 ACCACAACGATACAACGATACA 57.823 40.909 0.00 0.00 37.03 2.29
2676 2779 4.171005 ACCACAACGATACAACGATACAG 58.829 43.478 0.00 0.00 37.03 2.74
2677 2780 3.000078 CCACAACGATACAACGATACAGC 60.000 47.826 0.00 0.00 37.03 4.40
2678 2781 3.000078 CACAACGATACAACGATACAGCC 60.000 47.826 0.00 0.00 37.03 4.85
2679 2782 3.183754 CAACGATACAACGATACAGCCA 58.816 45.455 0.00 0.00 37.03 4.75
2680 2783 3.513680 ACGATACAACGATACAGCCAA 57.486 42.857 0.00 0.00 37.03 4.52
2681 2784 3.852286 ACGATACAACGATACAGCCAAA 58.148 40.909 0.00 0.00 37.03 3.28
2682 2785 3.863424 ACGATACAACGATACAGCCAAAG 59.137 43.478 0.00 0.00 37.03 2.77
2683 2786 3.302480 CGATACAACGATACAGCCAAAGC 60.302 47.826 0.00 0.00 35.63 3.51
2684 2787 5.497519 CGATACAACGATACAGCCAAAGCT 61.498 45.833 0.00 0.00 42.64 3.74
2685 2788 6.918800 CGATACAACGATACAGCCAAAGCTT 61.919 44.000 0.00 0.00 40.91 3.74
2686 2789 8.308585 CGATACAACGATACAGCCAAAGCTTT 62.309 42.308 5.69 5.69 40.91 3.51
2687 2790 9.670279 CGATACAACGATACAGCCAAAGCTTTT 62.670 40.741 9.53 0.00 40.91 2.27
2696 2799 3.658757 GCCAAAGCTTTTCCATGTACA 57.341 42.857 9.53 0.00 35.50 2.90
2697 2800 3.317150 GCCAAAGCTTTTCCATGTACAC 58.683 45.455 9.53 0.00 35.50 2.90
2698 2801 3.005791 GCCAAAGCTTTTCCATGTACACT 59.994 43.478 9.53 0.00 35.50 3.55
2699 2802 4.217550 GCCAAAGCTTTTCCATGTACACTA 59.782 41.667 9.53 0.00 35.50 2.74
2700 2803 5.278758 GCCAAAGCTTTTCCATGTACACTAA 60.279 40.000 9.53 0.00 35.50 2.24
2701 2804 6.381801 CCAAAGCTTTTCCATGTACACTAAG 58.618 40.000 9.53 0.00 0.00 2.18
2702 2805 5.629079 AAGCTTTTCCATGTACACTAAGC 57.371 39.130 15.68 15.68 37.40 3.09
2703 2806 4.911390 AGCTTTTCCATGTACACTAAGCT 58.089 39.130 18.38 18.38 41.25 3.74
2704 2807 6.049955 AGCTTTTCCATGTACACTAAGCTA 57.950 37.500 20.78 0.00 43.41 3.32
2705 2808 6.472887 AGCTTTTCCATGTACACTAAGCTAA 58.527 36.000 20.78 3.52 43.41 3.09
2706 2809 6.940298 AGCTTTTCCATGTACACTAAGCTAAA 59.060 34.615 20.78 7.56 43.41 1.85
2707 2810 7.119846 AGCTTTTCCATGTACACTAAGCTAAAG 59.880 37.037 20.78 14.54 43.41 1.85
2708 2811 7.119262 GCTTTTCCATGTACACTAAGCTAAAGA 59.881 37.037 15.97 0.00 35.04 2.52
2709 2812 8.911918 TTTTCCATGTACACTAAGCTAAAGAA 57.088 30.769 0.00 0.00 0.00 2.52
2710 2813 8.911918 TTTCCATGTACACTAAGCTAAAGAAA 57.088 30.769 0.00 0.00 0.00 2.52
2711 2814 7.900782 TCCATGTACACTAAGCTAAAGAAAC 57.099 36.000 0.00 0.00 0.00 2.78
2712 2815 7.446769 TCCATGTACACTAAGCTAAAGAAACA 58.553 34.615 0.00 4.76 0.00 2.83
2713 2816 7.934665 TCCATGTACACTAAGCTAAAGAAACAA 59.065 33.333 0.00 0.00 0.00 2.83
2714 2817 8.564574 CCATGTACACTAAGCTAAAGAAACAAA 58.435 33.333 0.00 0.00 0.00 2.83
2715 2818 9.599322 CATGTACACTAAGCTAAAGAAACAAAG 57.401 33.333 0.00 0.21 0.00 2.77
2716 2819 8.149973 TGTACACTAAGCTAAAGAAACAAAGG 57.850 34.615 3.13 0.00 0.00 3.11
2717 2820 6.635030 ACACTAAGCTAAAGAAACAAAGGG 57.365 37.500 3.13 0.00 0.00 3.95
2718 2821 6.362248 ACACTAAGCTAAAGAAACAAAGGGA 58.638 36.000 3.13 0.00 0.00 4.20
2719 2822 7.004691 ACACTAAGCTAAAGAAACAAAGGGAT 58.995 34.615 3.13 0.00 0.00 3.85
2720 2823 7.040409 ACACTAAGCTAAAGAAACAAAGGGATG 60.040 37.037 3.13 0.00 0.00 3.51
2721 2824 7.174946 CACTAAGCTAAAGAAACAAAGGGATGA 59.825 37.037 3.13 0.00 0.00 2.92
2722 2825 6.581171 AAGCTAAAGAAACAAAGGGATGAG 57.419 37.500 0.00 0.00 0.00 2.90
2723 2826 5.012893 AGCTAAAGAAACAAAGGGATGAGG 58.987 41.667 0.00 0.00 0.00 3.86
2724 2827 5.010282 GCTAAAGAAACAAAGGGATGAGGA 58.990 41.667 0.00 0.00 0.00 3.71
2725 2828 5.476945 GCTAAAGAAACAAAGGGATGAGGAA 59.523 40.000 0.00 0.00 0.00 3.36
2726 2829 6.015434 GCTAAAGAAACAAAGGGATGAGGAAA 60.015 38.462 0.00 0.00 0.00 3.13
2727 2830 6.410942 AAAGAAACAAAGGGATGAGGAAAG 57.589 37.500 0.00 0.00 0.00 2.62
2728 2831 4.411013 AGAAACAAAGGGATGAGGAAAGG 58.589 43.478 0.00 0.00 0.00 3.11
2729 2832 4.106341 AGAAACAAAGGGATGAGGAAAGGA 59.894 41.667 0.00 0.00 0.00 3.36
2730 2833 3.441500 ACAAAGGGATGAGGAAAGGAC 57.558 47.619 0.00 0.00 0.00 3.85
2731 2834 2.041755 ACAAAGGGATGAGGAAAGGACC 59.958 50.000 0.00 0.00 0.00 4.46
2732 2835 2.041620 CAAAGGGATGAGGAAAGGACCA 59.958 50.000 0.00 0.00 0.00 4.02
2733 2836 2.059756 AGGGATGAGGAAAGGACCAA 57.940 50.000 0.00 0.00 0.00 3.67
2734 2837 1.918957 AGGGATGAGGAAAGGACCAAG 59.081 52.381 0.00 0.00 0.00 3.61
2735 2838 1.916181 GGGATGAGGAAAGGACCAAGA 59.084 52.381 0.00 0.00 0.00 3.02
2736 2839 2.511637 GGGATGAGGAAAGGACCAAGAT 59.488 50.000 0.00 0.00 0.00 2.40
2737 2840 3.549794 GGATGAGGAAAGGACCAAGATG 58.450 50.000 0.00 0.00 0.00 2.90
2738 2841 3.200825 GGATGAGGAAAGGACCAAGATGA 59.799 47.826 0.00 0.00 0.00 2.92
2739 2842 4.141298 GGATGAGGAAAGGACCAAGATGAT 60.141 45.833 0.00 0.00 0.00 2.45
2740 2843 4.226427 TGAGGAAAGGACCAAGATGATG 57.774 45.455 0.00 0.00 0.00 3.07
2741 2844 3.588842 TGAGGAAAGGACCAAGATGATGT 59.411 43.478 0.00 0.00 0.00 3.06
2742 2845 4.195416 GAGGAAAGGACCAAGATGATGTC 58.805 47.826 0.00 0.00 0.00 3.06
2743 2846 3.588842 AGGAAAGGACCAAGATGATGTCA 59.411 43.478 0.00 0.00 0.00 3.58
2744 2847 3.691609 GGAAAGGACCAAGATGATGTCAC 59.308 47.826 0.00 0.00 0.00 3.67
2745 2848 3.356529 AAGGACCAAGATGATGTCACC 57.643 47.619 0.00 0.00 0.00 4.02
2746 2849 2.555664 AGGACCAAGATGATGTCACCT 58.444 47.619 0.00 0.00 0.00 4.00
2747 2850 3.724478 AGGACCAAGATGATGTCACCTA 58.276 45.455 0.00 0.00 0.00 3.08
2748 2851 4.104086 AGGACCAAGATGATGTCACCTAA 58.896 43.478 0.00 0.00 0.00 2.69
2749 2852 4.536090 AGGACCAAGATGATGTCACCTAAA 59.464 41.667 0.00 0.00 0.00 1.85
2750 2853 5.014123 AGGACCAAGATGATGTCACCTAAAA 59.986 40.000 0.00 0.00 0.00 1.52
2751 2854 5.710099 GGACCAAGATGATGTCACCTAAAAA 59.290 40.000 0.00 0.00 0.00 1.94
2752 2855 6.378280 GGACCAAGATGATGTCACCTAAAAAT 59.622 38.462 0.00 0.00 0.00 1.82
2753 2856 7.093771 GGACCAAGATGATGTCACCTAAAAATT 60.094 37.037 0.00 0.00 0.00 1.82
2754 2857 8.877864 ACCAAGATGATGTCACCTAAAAATTA 57.122 30.769 0.00 0.00 0.00 1.40
2755 2858 8.739972 ACCAAGATGATGTCACCTAAAAATTAC 58.260 33.333 0.00 0.00 0.00 1.89
2756 2859 8.739039 CCAAGATGATGTCACCTAAAAATTACA 58.261 33.333 0.00 0.00 0.00 2.41
2762 2865 9.072375 TGATGTCACCTAAAAATTACATTGACA 57.928 29.630 3.76 3.76 44.43 3.58
2763 2866 9.906660 GATGTCACCTAAAAATTACATTGACAA 57.093 29.630 5.29 0.00 43.76 3.18
2765 2868 9.743057 TGTCACCTAAAAATTACATTGACAAAG 57.257 29.630 0.00 0.00 39.22 2.77
2766 2869 9.959749 GTCACCTAAAAATTACATTGACAAAGA 57.040 29.630 0.00 0.00 33.77 2.52
2806 2909 5.806654 ATTACCACCAAGAAATTTGCTGT 57.193 34.783 0.00 0.00 0.00 4.40
2807 2910 6.909550 ATTACCACCAAGAAATTTGCTGTA 57.090 33.333 0.00 0.00 0.00 2.74
2808 2911 6.716934 TTACCACCAAGAAATTTGCTGTAA 57.283 33.333 0.00 0.00 0.00 2.41
2809 2912 5.606348 ACCACCAAGAAATTTGCTGTAAA 57.394 34.783 0.00 0.00 0.00 2.01
2810 2913 5.983540 ACCACCAAGAAATTTGCTGTAAAA 58.016 33.333 0.00 0.00 0.00 1.52
2811 2914 6.591001 ACCACCAAGAAATTTGCTGTAAAAT 58.409 32.000 0.00 0.00 0.00 1.82
2812 2915 6.705825 ACCACCAAGAAATTTGCTGTAAAATC 59.294 34.615 0.00 0.00 0.00 2.17
2813 2916 6.147656 CCACCAAGAAATTTGCTGTAAAATCC 59.852 38.462 0.00 0.00 0.00 3.01
2814 2917 6.705381 CACCAAGAAATTTGCTGTAAAATCCA 59.295 34.615 0.00 0.00 0.00 3.41
2815 2918 6.705825 ACCAAGAAATTTGCTGTAAAATCCAC 59.294 34.615 0.00 0.00 0.00 4.02
2816 2919 6.930722 CCAAGAAATTTGCTGTAAAATCCACT 59.069 34.615 0.00 0.00 0.00 4.00
2817 2920 8.087750 CCAAGAAATTTGCTGTAAAATCCACTA 58.912 33.333 0.00 0.00 0.00 2.74
2818 2921 9.474920 CAAGAAATTTGCTGTAAAATCCACTAA 57.525 29.630 0.00 0.00 0.00 2.24
2823 2926 8.687824 ATTTGCTGTAAAATCCACTAAAATCG 57.312 30.769 0.00 0.00 0.00 3.34
2824 2927 7.441890 TTGCTGTAAAATCCACTAAAATCGA 57.558 32.000 0.00 0.00 0.00 3.59
2825 2928 6.837992 TGCTGTAAAATCCACTAAAATCGAC 58.162 36.000 0.00 0.00 0.00 4.20
2826 2929 6.428465 TGCTGTAAAATCCACTAAAATCGACA 59.572 34.615 0.00 0.00 0.00 4.35
2827 2930 7.041030 TGCTGTAAAATCCACTAAAATCGACAA 60.041 33.333 0.00 0.00 0.00 3.18
2828 2931 7.968405 GCTGTAAAATCCACTAAAATCGACAAT 59.032 33.333 0.00 0.00 0.00 2.71
2835 2938 9.449719 AATCCACTAAAATCGACAATACTTTCT 57.550 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.089920 CGGAATCAAGGGCAGTTCTG 58.910 55.000 0.00 0.00 0.00 3.02
104 106 4.914177 AGTACGATTTGAGGGGGTAAAA 57.086 40.909 0.00 0.00 0.00 1.52
171 173 6.013379 AGACAGATAGGTTGTGAAATTCTCCA 60.013 38.462 0.00 0.00 0.00 3.86
178 180 5.011635 TGCACTAGACAGATAGGTTGTGAAA 59.988 40.000 0.00 0.00 0.00 2.69
210 216 7.786178 TCAGTTACAGCATGAAACCATATAC 57.214 36.000 0.00 0.00 39.69 1.47
211 217 7.661437 GGATCAGTTACAGCATGAAACCATATA 59.339 37.037 0.00 0.00 39.69 0.86
212 218 6.488006 GGATCAGTTACAGCATGAAACCATAT 59.512 38.462 0.00 0.00 39.69 1.78
213 219 5.822519 GGATCAGTTACAGCATGAAACCATA 59.177 40.000 0.00 0.00 39.69 2.74
214 220 4.641989 GGATCAGTTACAGCATGAAACCAT 59.358 41.667 0.00 0.00 39.69 3.55
215 221 4.009675 GGATCAGTTACAGCATGAAACCA 58.990 43.478 0.00 0.00 39.69 3.67
216 222 3.378427 GGGATCAGTTACAGCATGAAACC 59.622 47.826 0.00 0.00 39.69 3.27
217 223 4.009675 TGGGATCAGTTACAGCATGAAAC 58.990 43.478 0.00 0.00 39.69 2.78
218 224 4.299586 TGGGATCAGTTACAGCATGAAA 57.700 40.909 0.00 0.00 39.69 2.69
219 225 3.998913 TGGGATCAGTTACAGCATGAA 57.001 42.857 0.00 0.00 39.69 2.57
220 226 3.200605 ACATGGGATCAGTTACAGCATGA 59.799 43.478 0.00 0.00 39.69 3.07
221 227 3.548770 ACATGGGATCAGTTACAGCATG 58.451 45.455 0.00 0.00 46.00 4.06
222 228 3.939740 ACATGGGATCAGTTACAGCAT 57.060 42.857 0.00 0.00 0.00 3.79
223 229 3.774766 AGTACATGGGATCAGTTACAGCA 59.225 43.478 0.00 0.00 0.00 4.41
224 230 4.122776 CAGTACATGGGATCAGTTACAGC 58.877 47.826 0.00 0.00 0.00 4.40
225 231 5.344743 ACAGTACATGGGATCAGTTACAG 57.655 43.478 0.00 0.00 0.00 2.74
226 232 6.685368 GCATACAGTACATGGGATCAGTTACA 60.685 42.308 0.00 0.00 0.00 2.41
227 233 5.696724 GCATACAGTACATGGGATCAGTTAC 59.303 44.000 0.00 0.00 0.00 2.50
228 234 5.602561 AGCATACAGTACATGGGATCAGTTA 59.397 40.000 0.00 0.00 0.00 2.24
234 240 4.262635 GCAGTAGCATACAGTACATGGGAT 60.263 45.833 0.00 0.00 46.26 3.85
247 253 2.237143 AGTTCAAGCAGGCAGTAGCATA 59.763 45.455 0.00 0.00 44.61 3.14
249 255 0.397941 AGTTCAAGCAGGCAGTAGCA 59.602 50.000 0.00 0.00 44.61 3.49
250 256 1.528129 AAGTTCAAGCAGGCAGTAGC 58.472 50.000 0.00 0.00 41.10 3.58
251 257 3.565482 TCAAAAGTTCAAGCAGGCAGTAG 59.435 43.478 0.00 0.00 0.00 2.57
253 259 2.378038 TCAAAAGTTCAAGCAGGCAGT 58.622 42.857 0.00 0.00 0.00 4.40
254 260 3.118542 GTTCAAAAGTTCAAGCAGGCAG 58.881 45.455 0.00 0.00 0.00 4.85
255 261 2.760092 AGTTCAAAAGTTCAAGCAGGCA 59.240 40.909 0.00 0.00 0.00 4.75
256 262 3.118542 CAGTTCAAAAGTTCAAGCAGGC 58.881 45.455 0.00 0.00 0.00 4.85
257 263 4.637483 TCAGTTCAAAAGTTCAAGCAGG 57.363 40.909 0.00 0.00 0.00 4.85
258 264 6.949578 TTTTCAGTTCAAAAGTTCAAGCAG 57.050 33.333 0.00 0.00 0.00 4.24
259 265 6.703607 TGTTTTTCAGTTCAAAAGTTCAAGCA 59.296 30.769 0.00 0.00 0.00 3.91
260 266 7.116061 TGTTTTTCAGTTCAAAAGTTCAAGC 57.884 32.000 0.00 0.00 0.00 4.01
320 349 7.525854 CGGTGCTTCAAATTTCGAAAATTAAAC 59.474 33.333 15.66 7.13 0.00 2.01
395 439 2.725312 GCCACTGATCCGCCTCAGA 61.725 63.158 16.53 0.00 44.48 3.27
490 534 0.105964 CCGATCTGGAGGGGAGAAGA 60.106 60.000 0.00 0.00 42.00 2.87
491 535 1.753368 GCCGATCTGGAGGGGAGAAG 61.753 65.000 7.64 0.00 42.00 2.85
492 536 1.762460 GCCGATCTGGAGGGGAGAA 60.762 63.158 7.64 0.00 42.00 2.87
537 582 6.380079 AGTTTTATCAGGAGTTCAGGACAT 57.620 37.500 0.00 0.00 0.00 3.06
538 583 5.825593 AGTTTTATCAGGAGTTCAGGACA 57.174 39.130 0.00 0.00 0.00 4.02
539 584 7.222999 CGAATAGTTTTATCAGGAGTTCAGGAC 59.777 40.741 0.00 0.00 0.00 3.85
540 585 7.265673 CGAATAGTTTTATCAGGAGTTCAGGA 58.734 38.462 0.00 0.00 0.00 3.86
543 588 6.535150 CAGCGAATAGTTTTATCAGGAGTTCA 59.465 38.462 0.00 0.00 0.00 3.18
544 589 6.510317 GCAGCGAATAGTTTTATCAGGAGTTC 60.510 42.308 0.00 0.00 0.00 3.01
545 590 5.294552 GCAGCGAATAGTTTTATCAGGAGTT 59.705 40.000 0.00 0.00 0.00 3.01
547 592 4.811024 TGCAGCGAATAGTTTTATCAGGAG 59.189 41.667 0.00 0.00 0.00 3.69
548 593 4.570772 GTGCAGCGAATAGTTTTATCAGGA 59.429 41.667 0.00 0.00 0.00 3.86
549 594 4.332543 TGTGCAGCGAATAGTTTTATCAGG 59.667 41.667 0.00 0.00 0.00 3.86
550 595 5.469373 TGTGCAGCGAATAGTTTTATCAG 57.531 39.130 0.00 0.00 0.00 2.90
551 596 5.871465 TTGTGCAGCGAATAGTTTTATCA 57.129 34.783 0.00 0.00 0.00 2.15
552 597 6.291269 GCATTTGTGCAGCGAATAGTTTTATC 60.291 38.462 0.00 0.00 30.27 1.75
590 635 6.679327 AAAATCTCCTACGATTTGGCTAAC 57.321 37.500 0.00 0.00 41.42 2.34
627 672 5.551233 TGAGAAGCTTATTAACAGTGCAGT 58.449 37.500 0.00 0.00 0.00 4.40
687 732 5.064441 ACAGCGTTATTTACCGAGTAACT 57.936 39.130 0.00 0.00 0.00 2.24
961 1027 2.406401 CGTAGTACGCACCTCCCG 59.594 66.667 10.19 0.00 33.65 5.14
975 1041 1.515081 GTTGCCAAACCAGCTACGTA 58.485 50.000 0.00 0.00 0.00 3.57
976 1042 2.327228 GTTGCCAAACCAGCTACGT 58.673 52.632 0.00 0.00 0.00 3.57
1615 1686 3.880846 CGCCATCTTCTTGCCCGC 61.881 66.667 0.00 0.00 0.00 6.13
1616 1687 2.923426 TAGCGCCATCTTCTTGCCCG 62.923 60.000 2.29 0.00 0.00 6.13
1617 1688 1.153168 TAGCGCCATCTTCTTGCCC 60.153 57.895 2.29 0.00 0.00 5.36
1635 1706 1.445716 CGTCGTATTCGCTCCCCTCT 61.446 60.000 0.00 0.00 36.96 3.69
1640 1711 0.041135 CTCCTCGTCGTATTCGCTCC 60.041 60.000 0.00 0.00 36.96 4.70
1677 1748 3.683587 GAACTTCCGCATTGCCGCC 62.684 63.158 2.41 0.00 0.00 6.13
1782 1853 0.805614 TCTCGTGCTTCTTCTCCTCG 59.194 55.000 0.00 0.00 0.00 4.63
1836 1907 1.153549 CCTCTGCCACGGCTAACTC 60.154 63.158 9.92 0.00 42.51 3.01
1947 2045 1.151877 CCCTACCCCCTACCCCATC 60.152 68.421 0.00 0.00 0.00 3.51
1948 2046 2.744784 CCCCTACCCCCTACCCCAT 61.745 68.421 0.00 0.00 0.00 4.00
1949 2047 3.379240 CCCCTACCCCCTACCCCA 61.379 72.222 0.00 0.00 0.00 4.96
2026 2125 1.806247 GCCAAACAGCAAAAGACCACC 60.806 52.381 0.00 0.00 0.00 4.61
2073 2172 0.661020 CACAACAAGTTGGGTCCGTC 59.339 55.000 16.45 0.00 44.45 4.79
2095 2194 1.353804 GCTGGAACACGCAACGAAA 59.646 52.632 0.00 0.00 33.80 3.46
2098 2197 4.368808 CGGCTGGAACACGCAACG 62.369 66.667 0.00 0.00 34.94 4.10
2109 2208 0.109873 GGATACGACGATACGGCTGG 60.110 60.000 0.00 0.00 37.61 4.85
2127 2226 7.732976 GTACATGTACATTGCCCATGCATGG 62.733 48.000 34.82 34.82 40.45 3.66
2128 2227 4.793678 GTACATGTACATTGCCCATGCATG 60.794 45.833 27.37 20.19 40.45 4.06
2142 2241 4.186159 GTGGTGGTGGTATGTACATGTAC 58.814 47.826 25.99 25.99 36.63 2.90
2143 2242 3.198200 GGTGGTGGTGGTATGTACATGTA 59.802 47.826 18.81 0.08 0.00 2.29
2144 2243 2.026636 GGTGGTGGTGGTATGTACATGT 60.027 50.000 18.81 2.69 0.00 3.21
2145 2244 2.026729 TGGTGGTGGTGGTATGTACATG 60.027 50.000 18.81 0.00 0.00 3.21
2146 2245 2.026636 GTGGTGGTGGTGGTATGTACAT 60.027 50.000 13.93 13.93 0.00 2.29
2147 2246 1.348366 GTGGTGGTGGTGGTATGTACA 59.652 52.381 0.00 0.00 0.00 2.90
2148 2247 1.339342 GGTGGTGGTGGTGGTATGTAC 60.339 57.143 0.00 0.00 0.00 2.90
2149 2248 0.985760 GGTGGTGGTGGTGGTATGTA 59.014 55.000 0.00 0.00 0.00 2.29
2150 2249 1.765074 GGTGGTGGTGGTGGTATGT 59.235 57.895 0.00 0.00 0.00 2.29
2151 2250 1.001393 GGGTGGTGGTGGTGGTATG 60.001 63.158 0.00 0.00 0.00 2.39
2152 2251 2.235761 GGGGTGGTGGTGGTGGTAT 61.236 63.158 0.00 0.00 0.00 2.73
2153 2252 2.855014 GGGGTGGTGGTGGTGGTA 60.855 66.667 0.00 0.00 0.00 3.25
2154 2253 4.855230 AGGGGTGGTGGTGGTGGT 62.855 66.667 0.00 0.00 0.00 4.16
2155 2254 4.284550 CAGGGGTGGTGGTGGTGG 62.285 72.222 0.00 0.00 0.00 4.61
2156 2255 2.291402 TTTCAGGGGTGGTGGTGGTG 62.291 60.000 0.00 0.00 0.00 4.17
2157 2256 1.368268 ATTTCAGGGGTGGTGGTGGT 61.368 55.000 0.00 0.00 0.00 4.16
2158 2257 0.701731 TATTTCAGGGGTGGTGGTGG 59.298 55.000 0.00 0.00 0.00 4.61
2159 2258 2.595750 TTATTTCAGGGGTGGTGGTG 57.404 50.000 0.00 0.00 0.00 4.17
2210 2309 5.277047 CAAGAAGCAAAAGAGAGAAACACC 58.723 41.667 0.00 0.00 0.00 4.16
2254 2357 5.008911 TCAACAGTCATTTGTCTGTTCCATG 59.991 40.000 16.66 9.45 46.13 3.66
2298 2401 2.821969 CTCCTAAACCATGGCATATGGC 59.178 50.000 21.76 21.76 42.82 4.40
2311 2414 7.516481 GTCCGAAACTCATAAAACTCCTAAAC 58.484 38.462 0.00 0.00 0.00 2.01
2323 2426 5.345702 CCTAAATCACGTCCGAAACTCATA 58.654 41.667 0.00 0.00 0.00 2.15
2324 2427 4.181578 CCTAAATCACGTCCGAAACTCAT 58.818 43.478 0.00 0.00 0.00 2.90
2325 2428 3.581755 CCTAAATCACGTCCGAAACTCA 58.418 45.455 0.00 0.00 0.00 3.41
2326 2429 2.928116 CCCTAAATCACGTCCGAAACTC 59.072 50.000 0.00 0.00 0.00 3.01
2327 2430 2.933928 GCCCTAAATCACGTCCGAAACT 60.934 50.000 0.00 0.00 0.00 2.66
2328 2431 1.395954 GCCCTAAATCACGTCCGAAAC 59.604 52.381 0.00 0.00 0.00 2.78
2329 2432 1.276989 AGCCCTAAATCACGTCCGAAA 59.723 47.619 0.00 0.00 0.00 3.46
2330 2433 0.899720 AGCCCTAAATCACGTCCGAA 59.100 50.000 0.00 0.00 0.00 4.30
2331 2434 1.766494 TAGCCCTAAATCACGTCCGA 58.234 50.000 0.00 0.00 0.00 4.55
2343 2446 9.408648 CTTTAGAATTCCTTTTGAATAGCCCTA 57.591 33.333 0.65 0.00 42.97 3.53
2392 2495 7.060421 AGACCAACACAGAAAAATTCCTAAGA 58.940 34.615 0.00 0.00 0.00 2.10
2397 2500 6.816140 TCAAAAGACCAACACAGAAAAATTCC 59.184 34.615 0.00 0.00 0.00 3.01
2398 2501 7.826260 TCAAAAGACCAACACAGAAAAATTC 57.174 32.000 0.00 0.00 0.00 2.17
2401 2504 7.382110 TGAATCAAAAGACCAACACAGAAAAA 58.618 30.769 0.00 0.00 0.00 1.94
2403 2506 6.522625 TGAATCAAAAGACCAACACAGAAA 57.477 33.333 0.00 0.00 0.00 2.52
2404 2507 6.713762 ATGAATCAAAAGACCAACACAGAA 57.286 33.333 0.00 0.00 0.00 3.02
2405 2508 6.430925 CCTATGAATCAAAAGACCAACACAGA 59.569 38.462 0.00 0.00 0.00 3.41
2406 2509 6.430925 TCCTATGAATCAAAAGACCAACACAG 59.569 38.462 0.00 0.00 0.00 3.66
2410 2513 7.093771 ACCAATCCTATGAATCAAAAGACCAAC 60.094 37.037 0.00 0.00 0.00 3.77
2451 2554 8.148351 CGGATGTAGAATAGACAATCCCTAAAA 58.852 37.037 0.00 0.00 0.00 1.52
2452 2555 7.256190 CCGGATGTAGAATAGACAATCCCTAAA 60.256 40.741 0.00 0.00 0.00 1.85
2453 2556 6.210784 CCGGATGTAGAATAGACAATCCCTAA 59.789 42.308 0.00 0.00 0.00 2.69
2454 2557 5.715279 CCGGATGTAGAATAGACAATCCCTA 59.285 44.000 0.00 0.00 0.00 3.53
2455 2558 4.528596 CCGGATGTAGAATAGACAATCCCT 59.471 45.833 0.00 0.00 0.00 4.20
2456 2559 4.527038 TCCGGATGTAGAATAGACAATCCC 59.473 45.833 0.00 0.00 0.00 3.85
2457 2560 5.723672 TCCGGATGTAGAATAGACAATCC 57.276 43.478 0.00 0.00 0.00 3.01
2458 2561 6.925211 TCATCCGGATGTAGAATAGACAATC 58.075 40.000 36.95 0.00 39.72 2.67
2459 2562 6.918067 TCATCCGGATGTAGAATAGACAAT 57.082 37.500 36.95 0.37 39.72 2.71
2460 2563 6.724893 TTCATCCGGATGTAGAATAGACAA 57.275 37.500 36.95 20.66 39.72 3.18
2461 2564 6.724893 TTTCATCCGGATGTAGAATAGACA 57.275 37.500 36.95 16.29 39.72 3.41
2462 2565 7.607250 AGATTTCATCCGGATGTAGAATAGAC 58.393 38.462 36.95 22.82 39.72 2.59
2463 2566 7.782897 AGATTTCATCCGGATGTAGAATAGA 57.217 36.000 36.95 17.68 39.72 1.98
2467 2570 9.929180 CTAATTAGATTTCATCCGGATGTAGAA 57.071 33.333 36.95 29.02 39.72 2.10
2468 2571 8.035394 GCTAATTAGATTTCATCCGGATGTAGA 58.965 37.037 36.95 25.57 39.72 2.59
2469 2572 8.037758 AGCTAATTAGATTTCATCCGGATGTAG 58.962 37.037 36.95 27.69 39.72 2.74
2470 2573 7.907389 AGCTAATTAGATTTCATCCGGATGTA 58.093 34.615 36.95 28.55 39.72 2.29
2471 2574 6.773638 AGCTAATTAGATTTCATCCGGATGT 58.226 36.000 36.95 22.85 39.72 3.06
2472 2575 7.678947 AAGCTAATTAGATTTCATCCGGATG 57.321 36.000 34.42 34.42 40.09 3.51
2507 2610 6.227298 TGTCATTCTTTGGTTGGCTAAAAA 57.773 33.333 0.00 0.00 0.00 1.94
2508 2611 5.860941 TGTCATTCTTTGGTTGGCTAAAA 57.139 34.783 0.00 0.00 0.00 1.52
2509 2612 5.362430 ACTTGTCATTCTTTGGTTGGCTAAA 59.638 36.000 0.00 0.00 0.00 1.85
2510 2613 4.892934 ACTTGTCATTCTTTGGTTGGCTAA 59.107 37.500 0.00 0.00 0.00 3.09
2511 2614 4.278170 CACTTGTCATTCTTTGGTTGGCTA 59.722 41.667 0.00 0.00 0.00 3.93
2512 2615 3.068590 CACTTGTCATTCTTTGGTTGGCT 59.931 43.478 0.00 0.00 0.00 4.75
2513 2616 3.181476 ACACTTGTCATTCTTTGGTTGGC 60.181 43.478 0.00 0.00 0.00 4.52
2514 2617 4.610945 GACACTTGTCATTCTTTGGTTGG 58.389 43.478 4.43 0.00 44.18 3.77
2528 2631 0.759436 ACGGGACAGGAGACACTTGT 60.759 55.000 0.00 0.00 41.46 3.16
2529 2632 0.319900 CACGGGACAGGAGACACTTG 60.320 60.000 0.00 0.00 0.00 3.16
2530 2633 0.759436 ACACGGGACAGGAGACACTT 60.759 55.000 0.00 0.00 0.00 3.16
2531 2634 1.152525 ACACGGGACAGGAGACACT 60.153 57.895 0.00 0.00 0.00 3.55
2532 2635 1.179814 AGACACGGGACAGGAGACAC 61.180 60.000 0.00 0.00 0.00 3.67
2533 2636 0.894184 GAGACACGGGACAGGAGACA 60.894 60.000 0.00 0.00 0.00 3.41
2534 2637 0.609681 AGAGACACGGGACAGGAGAC 60.610 60.000 0.00 0.00 0.00 3.36
2535 2638 0.112606 AAGAGACACGGGACAGGAGA 59.887 55.000 0.00 0.00 0.00 3.71
2536 2639 0.244994 CAAGAGACACGGGACAGGAG 59.755 60.000 0.00 0.00 0.00 3.69
2537 2640 0.469331 ACAAGAGACACGGGACAGGA 60.469 55.000 0.00 0.00 0.00 3.86
2538 2641 0.393077 AACAAGAGACACGGGACAGG 59.607 55.000 0.00 0.00 0.00 4.00
2539 2642 1.867233 CAAACAAGAGACACGGGACAG 59.133 52.381 0.00 0.00 0.00 3.51
2540 2643 1.948104 CAAACAAGAGACACGGGACA 58.052 50.000 0.00 0.00 0.00 4.02
2541 2644 0.586802 GCAAACAAGAGACACGGGAC 59.413 55.000 0.00 0.00 0.00 4.46
2542 2645 0.468226 AGCAAACAAGAGACACGGGA 59.532 50.000 0.00 0.00 0.00 5.14
2543 2646 1.308998 AAGCAAACAAGAGACACGGG 58.691 50.000 0.00 0.00 0.00 5.28
2544 2647 3.065371 AGAAAAGCAAACAAGAGACACGG 59.935 43.478 0.00 0.00 0.00 4.94
2545 2648 4.031028 CAGAAAAGCAAACAAGAGACACG 58.969 43.478 0.00 0.00 0.00 4.49
2546 2649 4.986622 ACAGAAAAGCAAACAAGAGACAC 58.013 39.130 0.00 0.00 0.00 3.67
2547 2650 4.096382 GGACAGAAAAGCAAACAAGAGACA 59.904 41.667 0.00 0.00 0.00 3.41
2548 2651 4.498177 GGGACAGAAAAGCAAACAAGAGAC 60.498 45.833 0.00 0.00 0.00 3.36
2549 2652 3.632145 GGGACAGAAAAGCAAACAAGAGA 59.368 43.478 0.00 0.00 0.00 3.10
2550 2653 3.548818 CGGGACAGAAAAGCAAACAAGAG 60.549 47.826 0.00 0.00 0.00 2.85
2551 2654 2.357637 CGGGACAGAAAAGCAAACAAGA 59.642 45.455 0.00 0.00 0.00 3.02
2552 2655 2.731217 CGGGACAGAAAAGCAAACAAG 58.269 47.619 0.00 0.00 0.00 3.16
2553 2656 1.202359 GCGGGACAGAAAAGCAAACAA 60.202 47.619 0.00 0.00 0.00 2.83
2554 2657 0.383949 GCGGGACAGAAAAGCAAACA 59.616 50.000 0.00 0.00 0.00 2.83
2555 2658 0.668535 AGCGGGACAGAAAAGCAAAC 59.331 50.000 0.00 0.00 0.00 2.93
2556 2659 1.398692 AAGCGGGACAGAAAAGCAAA 58.601 45.000 0.00 0.00 0.00 3.68
2557 2660 1.398692 AAAGCGGGACAGAAAAGCAA 58.601 45.000 0.00 0.00 0.00 3.91
2558 2661 1.398692 AAAAGCGGGACAGAAAAGCA 58.601 45.000 0.00 0.00 0.00 3.91
2559 2662 3.850122 ATAAAAGCGGGACAGAAAAGC 57.150 42.857 0.00 0.00 0.00 3.51
2560 2663 8.889717 TCTATTTATAAAAGCGGGACAGAAAAG 58.110 33.333 1.21 0.00 0.00 2.27
2561 2664 8.671028 GTCTATTTATAAAAGCGGGACAGAAAA 58.329 33.333 1.21 0.00 0.00 2.29
2562 2665 8.044908 AGTCTATTTATAAAAGCGGGACAGAAA 58.955 33.333 1.21 0.00 0.00 2.52
2563 2666 7.562135 AGTCTATTTATAAAAGCGGGACAGAA 58.438 34.615 1.21 0.00 0.00 3.02
2564 2667 7.120923 AGTCTATTTATAAAAGCGGGACAGA 57.879 36.000 1.21 0.00 0.00 3.41
2565 2668 8.762426 GTTAGTCTATTTATAAAAGCGGGACAG 58.238 37.037 1.21 0.00 0.00 3.51
2566 2669 7.436080 CGTTAGTCTATTTATAAAAGCGGGACA 59.564 37.037 1.21 0.00 0.00 4.02
2567 2670 7.095899 CCGTTAGTCTATTTATAAAAGCGGGAC 60.096 40.741 10.87 10.05 0.00 4.46
2568 2671 6.925165 CCGTTAGTCTATTTATAAAAGCGGGA 59.075 38.462 10.87 0.99 0.00 5.14
2569 2672 6.146673 CCCGTTAGTCTATTTATAAAAGCGGG 59.853 42.308 18.94 18.94 44.97 6.13
2570 2673 6.703165 ACCCGTTAGTCTATTTATAAAAGCGG 59.297 38.462 11.47 11.47 0.00 5.52
2571 2674 7.650903 AGACCCGTTAGTCTATTTATAAAAGCG 59.349 37.037 1.21 0.00 45.31 4.68
2572 2675 8.883954 AGACCCGTTAGTCTATTTATAAAAGC 57.116 34.615 1.21 0.00 45.31 3.51
2593 2696 2.901839 TGTAGAAGTTGGGGTGTAGACC 59.098 50.000 0.00 0.00 42.27 3.85
2594 2697 4.313282 GTTGTAGAAGTTGGGGTGTAGAC 58.687 47.826 0.00 0.00 0.00 2.59
2595 2698 3.325716 GGTTGTAGAAGTTGGGGTGTAGA 59.674 47.826 0.00 0.00 0.00 2.59
2596 2699 3.558533 GGGTTGTAGAAGTTGGGGTGTAG 60.559 52.174 0.00 0.00 0.00 2.74
2597 2700 2.372837 GGGTTGTAGAAGTTGGGGTGTA 59.627 50.000 0.00 0.00 0.00 2.90
2598 2701 1.144298 GGGTTGTAGAAGTTGGGGTGT 59.856 52.381 0.00 0.00 0.00 4.16
2599 2702 1.880646 CGGGTTGTAGAAGTTGGGGTG 60.881 57.143 0.00 0.00 0.00 4.61
2600 2703 0.399075 CGGGTTGTAGAAGTTGGGGT 59.601 55.000 0.00 0.00 0.00 4.95
2601 2704 0.322187 CCGGGTTGTAGAAGTTGGGG 60.322 60.000 0.00 0.00 0.00 4.96
2602 2705 0.688487 TCCGGGTTGTAGAAGTTGGG 59.312 55.000 0.00 0.00 0.00 4.12
2603 2706 1.071071 TGTCCGGGTTGTAGAAGTTGG 59.929 52.381 0.00 0.00 0.00 3.77
2604 2707 2.036733 TCTGTCCGGGTTGTAGAAGTTG 59.963 50.000 0.00 0.00 0.00 3.16
2605 2708 2.322658 TCTGTCCGGGTTGTAGAAGTT 58.677 47.619 0.00 0.00 0.00 2.66
2606 2709 2.005370 TCTGTCCGGGTTGTAGAAGT 57.995 50.000 0.00 0.00 0.00 3.01
2607 2710 2.561419 TCTTCTGTCCGGGTTGTAGAAG 59.439 50.000 19.07 19.07 43.43 2.85
2608 2711 2.561419 CTCTTCTGTCCGGGTTGTAGAA 59.439 50.000 0.00 4.26 0.00 2.10
2609 2712 2.168496 CTCTTCTGTCCGGGTTGTAGA 58.832 52.381 0.00 0.00 0.00 2.59
2610 2713 1.404315 GCTCTTCTGTCCGGGTTGTAG 60.404 57.143 0.00 0.00 0.00 2.74
2611 2714 0.606604 GCTCTTCTGTCCGGGTTGTA 59.393 55.000 0.00 0.00 0.00 2.41
2612 2715 1.371558 GCTCTTCTGTCCGGGTTGT 59.628 57.895 0.00 0.00 0.00 3.32
2613 2716 0.671781 CTGCTCTTCTGTCCGGGTTG 60.672 60.000 0.00 0.00 0.00 3.77
2614 2717 1.674057 CTGCTCTTCTGTCCGGGTT 59.326 57.895 0.00 0.00 0.00 4.11
2615 2718 2.948720 GCTGCTCTTCTGTCCGGGT 61.949 63.158 0.00 0.00 0.00 5.28
2616 2719 1.323271 TAGCTGCTCTTCTGTCCGGG 61.323 60.000 4.91 0.00 0.00 5.73
2617 2720 0.532573 TTAGCTGCTCTTCTGTCCGG 59.467 55.000 4.91 0.00 0.00 5.14
2618 2721 2.370281 TTTAGCTGCTCTTCTGTCCG 57.630 50.000 4.91 0.00 0.00 4.79
2636 2739 6.729690 TGTGGTTCTTTGATCTCCATTTTT 57.270 33.333 0.00 0.00 0.00 1.94
2637 2740 6.515832 GTTGTGGTTCTTTGATCTCCATTTT 58.484 36.000 0.00 0.00 0.00 1.82
2638 2741 5.278463 CGTTGTGGTTCTTTGATCTCCATTT 60.278 40.000 0.00 0.00 0.00 2.32
2639 2742 4.216257 CGTTGTGGTTCTTTGATCTCCATT 59.784 41.667 0.00 0.00 0.00 3.16
2640 2743 3.753272 CGTTGTGGTTCTTTGATCTCCAT 59.247 43.478 0.00 0.00 0.00 3.41
2641 2744 3.138304 CGTTGTGGTTCTTTGATCTCCA 58.862 45.455 0.00 0.00 0.00 3.86
2642 2745 3.399330 TCGTTGTGGTTCTTTGATCTCC 58.601 45.455 0.00 0.00 0.00 3.71
2643 2746 5.637810 TGTATCGTTGTGGTTCTTTGATCTC 59.362 40.000 0.00 0.00 0.00 2.75
2644 2747 5.547465 TGTATCGTTGTGGTTCTTTGATCT 58.453 37.500 0.00 0.00 0.00 2.75
2645 2748 5.856126 TGTATCGTTGTGGTTCTTTGATC 57.144 39.130 0.00 0.00 0.00 2.92
2646 2749 5.333798 CGTTGTATCGTTGTGGTTCTTTGAT 60.334 40.000 0.00 0.00 0.00 2.57
2647 2750 4.025563 CGTTGTATCGTTGTGGTTCTTTGA 60.026 41.667 0.00 0.00 0.00 2.69
2648 2751 4.025563 TCGTTGTATCGTTGTGGTTCTTTG 60.026 41.667 0.00 0.00 0.00 2.77
2649 2752 4.121317 TCGTTGTATCGTTGTGGTTCTTT 58.879 39.130 0.00 0.00 0.00 2.52
2650 2753 3.719924 TCGTTGTATCGTTGTGGTTCTT 58.280 40.909 0.00 0.00 0.00 2.52
2651 2754 3.374220 TCGTTGTATCGTTGTGGTTCT 57.626 42.857 0.00 0.00 0.00 3.01
2652 2755 4.622313 TGTATCGTTGTATCGTTGTGGTTC 59.378 41.667 0.00 0.00 0.00 3.62
2653 2756 4.558178 TGTATCGTTGTATCGTTGTGGTT 58.442 39.130 0.00 0.00 0.00 3.67
2654 2757 4.171005 CTGTATCGTTGTATCGTTGTGGT 58.829 43.478 0.00 0.00 0.00 4.16
2655 2758 3.000078 GCTGTATCGTTGTATCGTTGTGG 60.000 47.826 0.00 0.00 0.00 4.17
2656 2759 3.000078 GGCTGTATCGTTGTATCGTTGTG 60.000 47.826 0.00 0.00 0.00 3.33
2657 2760 3.184541 GGCTGTATCGTTGTATCGTTGT 58.815 45.455 0.00 0.00 0.00 3.32
2658 2761 3.183754 TGGCTGTATCGTTGTATCGTTG 58.816 45.455 0.00 0.00 0.00 4.10
2659 2762 3.513680 TGGCTGTATCGTTGTATCGTT 57.486 42.857 0.00 0.00 0.00 3.85
2660 2763 3.513680 TTGGCTGTATCGTTGTATCGT 57.486 42.857 0.00 0.00 0.00 3.73
2661 2764 3.302480 GCTTTGGCTGTATCGTTGTATCG 60.302 47.826 0.00 0.00 35.22 2.92
2662 2765 4.197107 GCTTTGGCTGTATCGTTGTATC 57.803 45.455 0.00 0.00 35.22 2.24
2676 2779 3.005791 AGTGTACATGGAAAAGCTTTGGC 59.994 43.478 13.54 8.09 39.06 4.52
2677 2780 4.853924 AGTGTACATGGAAAAGCTTTGG 57.146 40.909 13.54 3.22 0.00 3.28
2678 2781 5.858581 GCTTAGTGTACATGGAAAAGCTTTG 59.141 40.000 13.54 2.66 35.98 2.77
2679 2782 5.770162 AGCTTAGTGTACATGGAAAAGCTTT 59.230 36.000 19.02 5.69 44.12 3.51
2680 2783 5.316987 AGCTTAGTGTACATGGAAAAGCTT 58.683 37.500 19.02 0.00 44.12 3.74
2681 2784 4.911390 AGCTTAGTGTACATGGAAAAGCT 58.089 39.130 19.02 19.02 42.35 3.74
2682 2785 6.737254 TTAGCTTAGTGTACATGGAAAAGC 57.263 37.500 16.37 16.37 38.46 3.51
2683 2786 8.547967 TCTTTAGCTTAGTGTACATGGAAAAG 57.452 34.615 0.00 4.12 0.00 2.27
2684 2787 8.911918 TTCTTTAGCTTAGTGTACATGGAAAA 57.088 30.769 0.00 0.00 0.00 2.29
2685 2788 8.780249 GTTTCTTTAGCTTAGTGTACATGGAAA 58.220 33.333 0.00 0.00 0.00 3.13
2686 2789 7.934665 TGTTTCTTTAGCTTAGTGTACATGGAA 59.065 33.333 0.00 0.00 0.00 3.53
2687 2790 7.446769 TGTTTCTTTAGCTTAGTGTACATGGA 58.553 34.615 0.00 0.00 0.00 3.41
2688 2791 7.667043 TGTTTCTTTAGCTTAGTGTACATGG 57.333 36.000 0.00 0.00 0.00 3.66
2689 2792 9.599322 CTTTGTTTCTTTAGCTTAGTGTACATG 57.401 33.333 0.00 0.00 0.00 3.21
2690 2793 8.784043 CCTTTGTTTCTTTAGCTTAGTGTACAT 58.216 33.333 0.00 0.00 0.00 2.29
2691 2794 7.227910 CCCTTTGTTTCTTTAGCTTAGTGTACA 59.772 37.037 0.00 0.00 0.00 2.90
2692 2795 7.443272 TCCCTTTGTTTCTTTAGCTTAGTGTAC 59.557 37.037 0.00 0.00 0.00 2.90
2693 2796 7.511268 TCCCTTTGTTTCTTTAGCTTAGTGTA 58.489 34.615 0.00 0.00 0.00 2.90
2694 2797 6.362248 TCCCTTTGTTTCTTTAGCTTAGTGT 58.638 36.000 0.00 0.00 0.00 3.55
2695 2798 6.877611 TCCCTTTGTTTCTTTAGCTTAGTG 57.122 37.500 0.00 0.00 0.00 2.74
2696 2799 7.231467 TCATCCCTTTGTTTCTTTAGCTTAGT 58.769 34.615 0.00 0.00 0.00 2.24
2697 2800 7.148171 CCTCATCCCTTTGTTTCTTTAGCTTAG 60.148 40.741 0.00 0.00 0.00 2.18
2698 2801 6.659242 CCTCATCCCTTTGTTTCTTTAGCTTA 59.341 38.462 0.00 0.00 0.00 3.09
2699 2802 5.478332 CCTCATCCCTTTGTTTCTTTAGCTT 59.522 40.000 0.00 0.00 0.00 3.74
2700 2803 5.012893 CCTCATCCCTTTGTTTCTTTAGCT 58.987 41.667 0.00 0.00 0.00 3.32
2701 2804 5.010282 TCCTCATCCCTTTGTTTCTTTAGC 58.990 41.667 0.00 0.00 0.00 3.09
2702 2805 7.309438 CCTTTCCTCATCCCTTTGTTTCTTTAG 60.309 40.741 0.00 0.00 0.00 1.85
2703 2806 6.493458 CCTTTCCTCATCCCTTTGTTTCTTTA 59.507 38.462 0.00 0.00 0.00 1.85
2704 2807 5.305386 CCTTTCCTCATCCCTTTGTTTCTTT 59.695 40.000 0.00 0.00 0.00 2.52
2705 2808 4.835056 CCTTTCCTCATCCCTTTGTTTCTT 59.165 41.667 0.00 0.00 0.00 2.52
2706 2809 4.106341 TCCTTTCCTCATCCCTTTGTTTCT 59.894 41.667 0.00 0.00 0.00 2.52
2707 2810 4.218635 GTCCTTTCCTCATCCCTTTGTTTC 59.781 45.833 0.00 0.00 0.00 2.78
2708 2811 4.152647 GTCCTTTCCTCATCCCTTTGTTT 58.847 43.478 0.00 0.00 0.00 2.83
2709 2812 3.500471 GGTCCTTTCCTCATCCCTTTGTT 60.500 47.826 0.00 0.00 0.00 2.83
2710 2813 2.041755 GGTCCTTTCCTCATCCCTTTGT 59.958 50.000 0.00 0.00 0.00 2.83
2711 2814 2.041620 TGGTCCTTTCCTCATCCCTTTG 59.958 50.000 0.00 0.00 0.00 2.77
2712 2815 2.358258 TGGTCCTTTCCTCATCCCTTT 58.642 47.619 0.00 0.00 0.00 3.11
2713 2816 2.059756 TGGTCCTTTCCTCATCCCTT 57.940 50.000 0.00 0.00 0.00 3.95
2714 2817 1.918957 CTTGGTCCTTTCCTCATCCCT 59.081 52.381 0.00 0.00 0.00 4.20
2715 2818 1.916181 TCTTGGTCCTTTCCTCATCCC 59.084 52.381 0.00 0.00 0.00 3.85
2716 2819 3.200825 TCATCTTGGTCCTTTCCTCATCC 59.799 47.826 0.00 0.00 0.00 3.51
2717 2820 4.494091 TCATCTTGGTCCTTTCCTCATC 57.506 45.455 0.00 0.00 0.00 2.92
2718 2821 4.229123 ACATCATCTTGGTCCTTTCCTCAT 59.771 41.667 0.00 0.00 0.00 2.90
2719 2822 3.588842 ACATCATCTTGGTCCTTTCCTCA 59.411 43.478 0.00 0.00 0.00 3.86
2720 2823 4.195416 GACATCATCTTGGTCCTTTCCTC 58.805 47.826 0.00 0.00 0.00 3.71
2721 2824 3.588842 TGACATCATCTTGGTCCTTTCCT 59.411 43.478 0.00 0.00 0.00 3.36
2722 2825 3.691609 GTGACATCATCTTGGTCCTTTCC 59.308 47.826 0.00 0.00 0.00 3.13
2723 2826 3.691609 GGTGACATCATCTTGGTCCTTTC 59.308 47.826 0.00 0.00 0.00 2.62
2724 2827 3.331889 AGGTGACATCATCTTGGTCCTTT 59.668 43.478 0.00 0.00 32.38 3.11
2725 2828 2.915604 AGGTGACATCATCTTGGTCCTT 59.084 45.455 0.00 0.00 32.38 3.36
2726 2829 2.555664 AGGTGACATCATCTTGGTCCT 58.444 47.619 0.00 0.00 32.38 3.85
2727 2830 4.487714 TTAGGTGACATCATCTTGGTCC 57.512 45.455 0.00 0.00 38.47 4.46
2728 2831 6.817765 TTTTTAGGTGACATCATCTTGGTC 57.182 37.500 0.00 0.00 38.47 4.02
2729 2832 7.781324 AATTTTTAGGTGACATCATCTTGGT 57.219 32.000 0.00 0.00 38.47 3.67
2730 2833 8.739039 TGTAATTTTTAGGTGACATCATCTTGG 58.261 33.333 0.00 0.00 38.47 3.61
2736 2839 9.072375 TGTCAATGTAATTTTTAGGTGACATCA 57.928 29.630 0.00 0.00 39.23 3.07
2737 2840 9.906660 TTGTCAATGTAATTTTTAGGTGACATC 57.093 29.630 4.20 0.00 42.49 3.06
2739 2842 9.743057 CTTTGTCAATGTAATTTTTAGGTGACA 57.257 29.630 0.00 0.00 41.59 3.58
2740 2843 9.959749 TCTTTGTCAATGTAATTTTTAGGTGAC 57.040 29.630 0.00 0.00 31.22 3.67
2790 2893 6.705825 GTGGATTTTACAGCAAATTTCTTGGT 59.294 34.615 0.00 0.00 0.00 3.67
2791 2894 6.930722 AGTGGATTTTACAGCAAATTTCTTGG 59.069 34.615 0.00 0.00 0.00 3.61
2792 2895 7.951530 AGTGGATTTTACAGCAAATTTCTTG 57.048 32.000 0.00 0.00 0.00 3.02
2797 2900 9.139174 CGATTTTAGTGGATTTTACAGCAAATT 57.861 29.630 0.00 0.00 0.00 1.82
2798 2901 8.519526 TCGATTTTAGTGGATTTTACAGCAAAT 58.480 29.630 0.00 0.00 0.00 2.32
2799 2902 7.806014 GTCGATTTTAGTGGATTTTACAGCAAA 59.194 33.333 0.00 0.00 0.00 3.68
2800 2903 7.041030 TGTCGATTTTAGTGGATTTTACAGCAA 60.041 33.333 0.00 0.00 0.00 3.91
2801 2904 6.428465 TGTCGATTTTAGTGGATTTTACAGCA 59.572 34.615 0.00 0.00 0.00 4.41
2802 2905 6.837992 TGTCGATTTTAGTGGATTTTACAGC 58.162 36.000 0.00 0.00 0.00 4.40
2809 2912 9.449719 AGAAAGTATTGTCGATTTTAGTGGATT 57.550 29.630 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.