Multiple sequence alignment - TraesCS3A01G374000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G374000 chr3A 100.000 4492 0 0 1 4492 623774478 623778969 0.000000e+00 8296
1 TraesCS3A01G374000 chr3D 87.381 3455 188 104 1169 4492 480968074 480971411 0.000000e+00 3736
2 TraesCS3A01G374000 chr3D 79.622 687 61 43 308 951 480966947 480967597 1.930000e-113 420
3 TraesCS3A01G374000 chr3D 75.026 965 199 35 2354 3294 349642848 349641902 4.180000e-110 409
4 TraesCS3A01G374000 chr3D 82.661 248 11 5 950 1174 480967636 480967874 1.650000e-44 191
5 TraesCS3A01G374000 chr3B 88.328 2536 167 48 1170 3670 641803357 641805798 0.000000e+00 2924
6 TraesCS3A01G374000 chr3B 85.052 863 52 33 3670 4492 641805829 641806654 0.000000e+00 808
7 TraesCS3A01G374000 chr3B 79.804 1020 105 52 216 1174 641802156 641803135 0.000000e+00 649
8 TraesCS3A01G374000 chr3B 74.767 967 198 36 2354 3294 448577920 448576974 4.210000e-105 392
9 TraesCS3A01G374000 chr1D 80.439 956 164 12 2350 3295 371742505 371741563 0.000000e+00 708
10 TraesCS3A01G374000 chr1D 70.628 732 178 27 2593 3295 37438465 37437742 4.720000e-25 126
11 TraesCS3A01G374000 chr1B 80.335 956 165 13 2350 3295 496505838 496504896 0.000000e+00 702
12 TraesCS3A01G374000 chr1B 76.210 248 57 2 3049 3295 57023668 57023422 3.650000e-26 130
13 TraesCS3A01G374000 chr2A 75.391 959 205 21 2354 3295 507388961 507389905 6.900000e-118 435
14 TraesCS3A01G374000 chr6D 73.962 530 97 30 2778 3279 414000748 414001264 4.620000e-40 176
15 TraesCS3A01G374000 chr4D 78.884 251 51 2 3052 3301 384670929 384671178 7.730000e-38 169
16 TraesCS3A01G374000 chr4B 78.884 251 51 2 3052 3301 471653269 471653518 7.730000e-38 169
17 TraesCS3A01G374000 chr4A 78.884 251 51 2 3052 3301 66339043 66339292 7.730000e-38 169
18 TraesCS3A01G374000 chr6B 73.635 531 97 28 2778 3279 623740364 623740880 1.000000e-36 165
19 TraesCS3A01G374000 chr1A 71.214 733 172 29 2593 3295 31895184 31895907 1.010000e-31 148
20 TraesCS3A01G374000 chr1A 76.923 182 39 3 3116 3295 36620492 36620312 2.860000e-17 100
21 TraesCS3A01G374000 chr7B 78.448 232 42 5 3055 3282 437364375 437364602 1.300000e-30 145
22 TraesCS3A01G374000 chr7D 77.586 232 44 5 3055 3282 421168066 421168293 2.820000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G374000 chr3A 623774478 623778969 4491 False 8296.000000 8296 100.000000 1 4492 1 chr3A.!!$F1 4491
1 TraesCS3A01G374000 chr3D 480966947 480971411 4464 False 1449.000000 3736 83.221333 308 4492 3 chr3D.!!$F1 4184
2 TraesCS3A01G374000 chr3D 349641902 349642848 946 True 409.000000 409 75.026000 2354 3294 1 chr3D.!!$R1 940
3 TraesCS3A01G374000 chr3B 641802156 641806654 4498 False 1460.333333 2924 84.394667 216 4492 3 chr3B.!!$F1 4276
4 TraesCS3A01G374000 chr3B 448576974 448577920 946 True 392.000000 392 74.767000 2354 3294 1 chr3B.!!$R1 940
5 TraesCS3A01G374000 chr1D 371741563 371742505 942 True 708.000000 708 80.439000 2350 3295 1 chr1D.!!$R2 945
6 TraesCS3A01G374000 chr1B 496504896 496505838 942 True 702.000000 702 80.335000 2350 3295 1 chr1B.!!$R2 945
7 TraesCS3A01G374000 chr2A 507388961 507389905 944 False 435.000000 435 75.391000 2354 3295 1 chr2A.!!$F1 941

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.033504 GTGACAAGTTGGAGAGCCGA 59.966 55.0 7.96 0.00 36.79 5.54 F
499 500 0.109504 GACGACAGAGTGCAGGTCTC 60.110 60.0 0.00 0.00 0.00 3.36 F
756 795 0.315568 ACCTGCGTGACTGAGAAGTC 59.684 55.0 0.00 0.00 39.15 3.01 F
1506 1899 0.107752 CCCTCTGCTCTGCTTCCTTC 60.108 60.0 0.00 0.00 0.00 3.46 F
1601 2010 0.179124 CAACCTAGTGGAGCGCTCTC 60.179 60.0 34.46 26.18 38.62 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1286 1638 0.107654 CCCTCGCCTTCCCAAGTTAG 60.108 60.000 0.00 0.0 0.00 2.34 R
1487 1880 0.107752 GAAGGAAGCAGAGCAGAGGG 60.108 60.000 0.00 0.0 0.00 4.30 R
1935 2349 0.179067 TGACGCGGGAAACTTCAAGT 60.179 50.000 12.47 0.0 0.00 3.16 R
3448 3896 1.377202 ACGGGCAATACCAGCAGTG 60.377 57.895 0.00 0.0 42.05 3.66 R
3568 4019 2.279741 CGAATTTCAGAATCTCGGCCA 58.720 47.619 2.24 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.177249 GTGCGTAGAACGGTCGGC 61.177 66.667 7.17 7.17 42.82 5.54
18 19 3.672447 TGCGTAGAACGGTCGGCA 61.672 61.111 11.89 11.89 42.82 5.69
19 20 2.202703 GCGTAGAACGGTCGGCAT 60.203 61.111 8.93 0.00 42.82 4.40
20 21 1.808390 GCGTAGAACGGTCGGCATT 60.808 57.895 8.93 0.00 42.82 3.56
21 22 1.749609 GCGTAGAACGGTCGGCATTC 61.750 60.000 8.93 0.00 42.82 2.67
22 23 1.143969 CGTAGAACGGTCGGCATTCC 61.144 60.000 0.00 0.00 38.08 3.01
23 24 0.808847 GTAGAACGGTCGGCATTCCC 60.809 60.000 0.00 0.00 0.00 3.97
24 25 0.974010 TAGAACGGTCGGCATTCCCT 60.974 55.000 0.00 0.00 0.00 4.20
25 26 1.376812 GAACGGTCGGCATTCCCTT 60.377 57.895 0.00 0.00 0.00 3.95
26 27 1.366854 GAACGGTCGGCATTCCCTTC 61.367 60.000 0.00 0.00 0.00 3.46
27 28 1.838073 AACGGTCGGCATTCCCTTCT 61.838 55.000 0.00 0.00 0.00 2.85
28 29 1.078426 CGGTCGGCATTCCCTTCTT 60.078 57.895 0.00 0.00 0.00 2.52
29 30 0.676782 CGGTCGGCATTCCCTTCTTT 60.677 55.000 0.00 0.00 0.00 2.52
30 31 1.545841 GGTCGGCATTCCCTTCTTTT 58.454 50.000 0.00 0.00 0.00 2.27
31 32 1.893137 GGTCGGCATTCCCTTCTTTTT 59.107 47.619 0.00 0.00 0.00 1.94
53 54 3.684103 TTTTGTCGTGTGATCAACCAC 57.316 42.857 0.00 1.18 37.55 4.16
54 55 2.317530 TTGTCGTGTGATCAACCACA 57.682 45.000 14.69 9.69 43.98 4.17
55 56 1.864565 TGTCGTGTGATCAACCACAG 58.135 50.000 14.69 8.73 46.42 3.66
56 57 0.512952 GTCGTGTGATCAACCACAGC 59.487 55.000 14.69 4.95 46.42 4.40
57 58 0.602638 TCGTGTGATCAACCACAGCC 60.603 55.000 14.69 0.00 46.42 4.85
58 59 1.868997 GTGTGATCAACCACAGCCG 59.131 57.895 10.69 0.00 46.42 5.52
59 60 1.965930 TGTGATCAACCACAGCCGC 60.966 57.895 0.00 0.00 41.63 6.53
60 61 1.965930 GTGATCAACCACAGCCGCA 60.966 57.895 0.00 0.00 37.04 5.69
61 62 1.228094 TGATCAACCACAGCCGCAA 60.228 52.632 0.00 0.00 0.00 4.85
62 63 1.210155 GATCAACCACAGCCGCAAC 59.790 57.895 0.00 0.00 0.00 4.17
63 64 2.200170 GATCAACCACAGCCGCAACC 62.200 60.000 0.00 0.00 0.00 3.77
64 65 2.697147 ATCAACCACAGCCGCAACCT 62.697 55.000 0.00 0.00 0.00 3.50
65 66 2.906897 AACCACAGCCGCAACCTG 60.907 61.111 0.00 0.00 36.41 4.00
66 67 4.954970 ACCACAGCCGCAACCTGG 62.955 66.667 0.00 0.00 34.65 4.45
73 74 2.594303 CCGCAACCTGGCACAAGA 60.594 61.111 0.00 0.00 38.70 3.02
74 75 2.192861 CCGCAACCTGGCACAAGAA 61.193 57.895 0.00 0.00 38.70 2.52
75 76 1.732917 CGCAACCTGGCACAAGAAA 59.267 52.632 0.00 0.00 38.70 2.52
76 77 0.594796 CGCAACCTGGCACAAGAAAC 60.595 55.000 0.00 0.00 38.70 2.78
77 78 0.746659 GCAACCTGGCACAAGAAACT 59.253 50.000 0.00 0.00 38.70 2.66
78 79 1.536709 GCAACCTGGCACAAGAAACTG 60.537 52.381 0.00 0.00 38.70 3.16
79 80 0.746659 AACCTGGCACAAGAAACTGC 59.253 50.000 0.00 0.00 38.70 4.40
80 81 0.395586 ACCTGGCACAAGAAACTGCA 60.396 50.000 0.00 0.00 38.70 4.41
81 82 0.963962 CCTGGCACAAGAAACTGCAT 59.036 50.000 0.00 0.00 38.70 3.96
82 83 1.068055 CCTGGCACAAGAAACTGCATC 60.068 52.381 0.00 0.00 38.70 3.91
83 84 0.592637 TGGCACAAGAAACTGCATCG 59.407 50.000 0.00 0.00 34.90 3.84
84 85 0.874390 GGCACAAGAAACTGCATCGA 59.126 50.000 0.00 0.00 34.90 3.59
85 86 1.135859 GGCACAAGAAACTGCATCGAG 60.136 52.381 0.00 0.00 34.90 4.04
86 87 1.727213 GCACAAGAAACTGCATCGAGC 60.727 52.381 0.00 0.00 45.96 5.03
87 88 1.135859 CACAAGAAACTGCATCGAGCC 60.136 52.381 0.00 0.00 44.83 4.70
88 89 1.271054 ACAAGAAACTGCATCGAGCCT 60.271 47.619 0.00 0.00 44.83 4.58
89 90 1.808945 CAAGAAACTGCATCGAGCCTT 59.191 47.619 0.00 0.00 44.83 4.35
90 91 2.191128 AGAAACTGCATCGAGCCTTT 57.809 45.000 0.00 0.00 44.83 3.11
91 92 1.808945 AGAAACTGCATCGAGCCTTTG 59.191 47.619 0.00 0.00 44.83 2.77
92 93 1.537202 GAAACTGCATCGAGCCTTTGT 59.463 47.619 0.00 0.00 44.83 2.83
93 94 1.160137 AACTGCATCGAGCCTTTGTC 58.840 50.000 0.00 0.00 44.83 3.18
94 95 0.674895 ACTGCATCGAGCCTTTGTCC 60.675 55.000 0.00 0.00 44.83 4.02
95 96 1.372087 CTGCATCGAGCCTTTGTCCC 61.372 60.000 0.00 0.00 44.83 4.46
96 97 2.115291 GCATCGAGCCTTTGTCCCC 61.115 63.158 0.00 0.00 37.23 4.81
97 98 1.299648 CATCGAGCCTTTGTCCCCA 59.700 57.895 0.00 0.00 0.00 4.96
98 99 1.026718 CATCGAGCCTTTGTCCCCAC 61.027 60.000 0.00 0.00 0.00 4.61
99 100 1.488705 ATCGAGCCTTTGTCCCCACA 61.489 55.000 0.00 0.00 0.00 4.17
100 101 1.002134 CGAGCCTTTGTCCCCACAT 60.002 57.895 0.00 0.00 30.55 3.21
101 102 0.609131 CGAGCCTTTGTCCCCACATT 60.609 55.000 0.00 0.00 30.55 2.71
102 103 0.890683 GAGCCTTTGTCCCCACATTG 59.109 55.000 0.00 0.00 30.55 2.82
103 104 0.542702 AGCCTTTGTCCCCACATTGG 60.543 55.000 0.00 0.00 37.25 3.16
104 105 0.541764 GCCTTTGTCCCCACATTGGA 60.542 55.000 0.00 0.00 40.96 3.53
105 106 2.008242 CCTTTGTCCCCACATTGGAA 57.992 50.000 0.00 0.00 40.96 3.53
106 107 1.895131 CCTTTGTCCCCACATTGGAAG 59.105 52.381 0.00 0.00 40.96 3.46
107 108 2.597455 CTTTGTCCCCACATTGGAAGT 58.403 47.619 0.00 0.00 40.96 3.01
108 109 1.993956 TTGTCCCCACATTGGAAGTG 58.006 50.000 0.00 0.00 40.96 3.16
109 110 1.144691 TGTCCCCACATTGGAAGTGA 58.855 50.000 0.00 0.00 40.96 3.41
110 111 1.202879 TGTCCCCACATTGGAAGTGAC 60.203 52.381 0.00 0.00 40.96 3.67
111 112 1.144691 TCCCCACATTGGAAGTGACA 58.855 50.000 0.00 0.00 40.96 3.58
112 113 1.496857 TCCCCACATTGGAAGTGACAA 59.503 47.619 0.00 0.00 40.96 3.18
113 114 1.888512 CCCCACATTGGAAGTGACAAG 59.111 52.381 0.00 0.00 40.96 3.16
114 115 2.586425 CCCACATTGGAAGTGACAAGT 58.414 47.619 0.00 0.00 40.96 3.16
115 116 2.958355 CCCACATTGGAAGTGACAAGTT 59.042 45.455 0.00 0.00 40.96 2.66
116 117 3.243501 CCCACATTGGAAGTGACAAGTTG 60.244 47.826 0.00 0.00 40.96 3.16
117 118 3.243501 CCACATTGGAAGTGACAAGTTGG 60.244 47.826 7.96 0.00 40.96 3.77
118 119 3.631686 CACATTGGAAGTGACAAGTTGGA 59.368 43.478 7.96 0.00 39.30 3.53
119 120 3.885297 ACATTGGAAGTGACAAGTTGGAG 59.115 43.478 7.96 0.00 0.00 3.86
120 121 3.924114 TTGGAAGTGACAAGTTGGAGA 57.076 42.857 7.96 0.00 0.00 3.71
121 122 3.475566 TGGAAGTGACAAGTTGGAGAG 57.524 47.619 7.96 0.00 0.00 3.20
122 123 2.147150 GGAAGTGACAAGTTGGAGAGC 58.853 52.381 7.96 0.00 0.00 4.09
123 124 2.147150 GAAGTGACAAGTTGGAGAGCC 58.853 52.381 7.96 0.00 0.00 4.70
124 125 0.034059 AGTGACAAGTTGGAGAGCCG 59.966 55.000 7.96 0.00 36.79 5.52
125 126 0.033504 GTGACAAGTTGGAGAGCCGA 59.966 55.000 7.96 0.00 36.79 5.54
126 127 0.976641 TGACAAGTTGGAGAGCCGAT 59.023 50.000 7.96 0.00 36.79 4.18
127 128 2.094182 GTGACAAGTTGGAGAGCCGATA 60.094 50.000 7.96 0.00 36.79 2.92
128 129 2.766263 TGACAAGTTGGAGAGCCGATAT 59.234 45.455 7.96 0.00 36.79 1.63
129 130 3.126831 GACAAGTTGGAGAGCCGATATG 58.873 50.000 7.96 0.00 36.79 1.78
130 131 1.869767 CAAGTTGGAGAGCCGATATGC 59.130 52.381 0.00 0.00 36.79 3.14
131 132 1.123077 AGTTGGAGAGCCGATATGCA 58.877 50.000 0.00 0.00 36.79 3.96
132 133 1.202580 AGTTGGAGAGCCGATATGCAC 60.203 52.381 0.00 0.00 36.79 4.57
133 134 0.829990 TTGGAGAGCCGATATGCACA 59.170 50.000 0.00 0.00 36.79 4.57
134 135 0.829990 TGGAGAGCCGATATGCACAA 59.170 50.000 0.00 0.00 36.79 3.33
135 136 1.221414 GGAGAGCCGATATGCACAAC 58.779 55.000 0.00 0.00 0.00 3.32
136 137 1.473257 GGAGAGCCGATATGCACAACA 60.473 52.381 0.00 0.00 0.00 3.33
137 138 1.863454 GAGAGCCGATATGCACAACAG 59.137 52.381 0.00 0.00 0.00 3.16
138 139 0.305922 GAGCCGATATGCACAACAGC 59.694 55.000 0.00 0.00 0.00 4.40
145 146 4.653893 TGCACAACAGCACAAGGA 57.346 50.000 0.00 0.00 40.11 3.36
146 147 2.879372 TGCACAACAGCACAAGGAA 58.121 47.368 0.00 0.00 40.11 3.36
147 148 1.401761 TGCACAACAGCACAAGGAAT 58.598 45.000 0.00 0.00 40.11 3.01
148 149 1.337703 TGCACAACAGCACAAGGAATC 59.662 47.619 0.00 0.00 40.11 2.52
149 150 1.337703 GCACAACAGCACAAGGAATCA 59.662 47.619 0.00 0.00 0.00 2.57
150 151 2.223782 GCACAACAGCACAAGGAATCAA 60.224 45.455 0.00 0.00 0.00 2.57
151 152 3.553508 GCACAACAGCACAAGGAATCAAT 60.554 43.478 0.00 0.00 0.00 2.57
152 153 4.232221 CACAACAGCACAAGGAATCAATC 58.768 43.478 0.00 0.00 0.00 2.67
153 154 4.022589 CACAACAGCACAAGGAATCAATCT 60.023 41.667 0.00 0.00 0.00 2.40
154 155 4.217118 ACAACAGCACAAGGAATCAATCTC 59.783 41.667 0.00 0.00 0.00 2.75
155 156 4.298103 ACAGCACAAGGAATCAATCTCT 57.702 40.909 0.00 0.00 0.00 3.10
156 157 4.008330 ACAGCACAAGGAATCAATCTCTG 58.992 43.478 0.00 0.00 0.00 3.35
157 158 4.008330 CAGCACAAGGAATCAATCTCTGT 58.992 43.478 0.00 0.00 0.00 3.41
158 159 4.458295 CAGCACAAGGAATCAATCTCTGTT 59.542 41.667 0.00 0.00 0.00 3.16
159 160 5.048224 CAGCACAAGGAATCAATCTCTGTTT 60.048 40.000 0.00 0.00 0.00 2.83
160 161 5.048224 AGCACAAGGAATCAATCTCTGTTTG 60.048 40.000 0.00 0.00 0.00 2.93
161 162 5.278660 GCACAAGGAATCAATCTCTGTTTGT 60.279 40.000 0.00 0.00 0.00 2.83
162 163 6.147581 CACAAGGAATCAATCTCTGTTTGTG 58.852 40.000 0.00 0.00 0.00 3.33
163 164 5.829924 ACAAGGAATCAATCTCTGTTTGTGT 59.170 36.000 0.00 0.00 0.00 3.72
164 165 5.954296 AGGAATCAATCTCTGTTTGTGTG 57.046 39.130 0.00 0.00 0.00 3.82
165 166 5.624159 AGGAATCAATCTCTGTTTGTGTGA 58.376 37.500 0.00 0.00 0.00 3.58
166 167 6.064060 AGGAATCAATCTCTGTTTGTGTGAA 58.936 36.000 0.00 0.00 0.00 3.18
167 168 6.547141 AGGAATCAATCTCTGTTTGTGTGAAA 59.453 34.615 0.00 0.00 0.00 2.69
168 169 7.232127 AGGAATCAATCTCTGTTTGTGTGAAAT 59.768 33.333 0.00 0.00 0.00 2.17
169 170 8.514594 GGAATCAATCTCTGTTTGTGTGAAATA 58.485 33.333 0.00 0.00 0.00 1.40
174 175 9.229784 CAATCTCTGTTTGTGTGAAATATATGC 57.770 33.333 0.00 0.00 0.00 3.14
175 176 7.003939 TCTCTGTTTGTGTGAAATATATGCG 57.996 36.000 0.00 0.00 0.00 4.73
176 177 5.568482 TCTGTTTGTGTGAAATATATGCGC 58.432 37.500 0.00 0.00 0.00 6.09
177 178 5.353956 TCTGTTTGTGTGAAATATATGCGCT 59.646 36.000 9.73 0.00 0.00 5.92
178 179 5.568482 TGTTTGTGTGAAATATATGCGCTC 58.432 37.500 9.73 0.00 0.00 5.03
179 180 5.353956 TGTTTGTGTGAAATATATGCGCTCT 59.646 36.000 9.73 0.00 0.00 4.09
180 181 5.408204 TTGTGTGAAATATATGCGCTCTG 57.592 39.130 9.73 0.00 0.00 3.35
181 182 4.441792 TGTGTGAAATATATGCGCTCTGT 58.558 39.130 9.73 0.00 0.00 3.41
182 183 5.596845 TGTGTGAAATATATGCGCTCTGTA 58.403 37.500 9.73 0.00 0.00 2.74
183 184 6.223120 TGTGTGAAATATATGCGCTCTGTAT 58.777 36.000 9.73 4.78 0.00 2.29
184 185 6.366061 TGTGTGAAATATATGCGCTCTGTATC 59.634 38.462 9.73 0.00 0.00 2.24
185 186 6.587990 GTGTGAAATATATGCGCTCTGTATCT 59.412 38.462 9.73 0.00 0.00 1.98
186 187 7.116948 GTGTGAAATATATGCGCTCTGTATCTT 59.883 37.037 9.73 0.00 0.00 2.40
187 188 7.329471 TGTGAAATATATGCGCTCTGTATCTTC 59.671 37.037 9.73 10.52 0.00 2.87
188 189 7.543868 GTGAAATATATGCGCTCTGTATCTTCT 59.456 37.037 9.73 0.00 0.00 2.85
189 190 8.090831 TGAAATATATGCGCTCTGTATCTTCTT 58.909 33.333 9.73 0.00 0.00 2.52
190 191 8.839310 AAATATATGCGCTCTGTATCTTCTTT 57.161 30.769 9.73 0.00 0.00 2.52
191 192 8.472683 AATATATGCGCTCTGTATCTTCTTTC 57.527 34.615 9.73 0.00 0.00 2.62
192 193 2.893637 TGCGCTCTGTATCTTCTTTCC 58.106 47.619 9.73 0.00 0.00 3.13
193 194 1.855360 GCGCTCTGTATCTTCTTTCCG 59.145 52.381 0.00 0.00 0.00 4.30
194 195 2.479730 GCGCTCTGTATCTTCTTTCCGA 60.480 50.000 0.00 0.00 0.00 4.55
195 196 3.367607 CGCTCTGTATCTTCTTTCCGAG 58.632 50.000 0.00 0.00 0.00 4.63
196 197 3.065510 CGCTCTGTATCTTCTTTCCGAGA 59.934 47.826 0.00 0.00 0.00 4.04
197 198 4.606961 GCTCTGTATCTTCTTTCCGAGAG 58.393 47.826 0.00 0.00 35.37 3.20
198 199 4.336993 GCTCTGTATCTTCTTTCCGAGAGA 59.663 45.833 0.00 0.00 35.37 3.10
199 200 5.732247 GCTCTGTATCTTCTTTCCGAGAGAC 60.732 48.000 0.00 0.00 35.37 3.36
200 201 4.333095 TCTGTATCTTCTTTCCGAGAGACG 59.667 45.833 0.00 0.00 42.18 4.18
201 202 4.259356 TGTATCTTCTTTCCGAGAGACGA 58.741 43.478 0.00 0.00 45.77 4.20
202 203 4.698780 TGTATCTTCTTTCCGAGAGACGAA 59.301 41.667 0.01 0.00 45.77 3.85
203 204 4.785511 ATCTTCTTTCCGAGAGACGAAA 57.214 40.909 0.01 0.00 45.77 3.46
204 205 4.579454 TCTTCTTTCCGAGAGACGAAAA 57.421 40.909 0.00 0.00 45.77 2.29
205 206 4.296690 TCTTCTTTCCGAGAGACGAAAAC 58.703 43.478 0.00 0.00 45.77 2.43
206 207 3.022607 TCTTTCCGAGAGACGAAAACC 57.977 47.619 0.00 0.00 45.77 3.27
207 208 2.067013 CTTTCCGAGAGACGAAAACCC 58.933 52.381 0.00 0.00 45.77 4.11
208 209 1.042229 TTCCGAGAGACGAAAACCCA 58.958 50.000 0.00 0.00 45.77 4.51
209 210 1.263356 TCCGAGAGACGAAAACCCAT 58.737 50.000 0.00 0.00 45.77 4.00
210 211 1.621814 TCCGAGAGACGAAAACCCATT 59.378 47.619 0.00 0.00 45.77 3.16
211 212 2.827322 TCCGAGAGACGAAAACCCATTA 59.173 45.455 0.00 0.00 45.77 1.90
212 213 2.928116 CCGAGAGACGAAAACCCATTAC 59.072 50.000 0.00 0.00 45.77 1.89
213 214 3.368116 CCGAGAGACGAAAACCCATTACT 60.368 47.826 0.00 0.00 45.77 2.24
214 215 4.142315 CCGAGAGACGAAAACCCATTACTA 60.142 45.833 0.00 0.00 45.77 1.82
215 216 5.035443 CGAGAGACGAAAACCCATTACTAG 58.965 45.833 0.00 0.00 45.77 2.57
216 217 5.392811 CGAGAGACGAAAACCCATTACTAGT 60.393 44.000 0.00 0.00 45.77 2.57
217 218 5.721232 AGAGACGAAAACCCATTACTAGTG 58.279 41.667 5.39 0.00 0.00 2.74
218 219 4.251268 AGACGAAAACCCATTACTAGTGC 58.749 43.478 5.39 0.00 0.00 4.40
219 220 2.997986 ACGAAAACCCATTACTAGTGCG 59.002 45.455 5.39 0.00 0.00 5.34
220 221 2.350498 CGAAAACCCATTACTAGTGCGG 59.650 50.000 5.39 2.83 0.00 5.69
226 227 2.223829 CCCATTACTAGTGCGGAGTGAG 60.224 54.545 5.39 0.00 0.00 3.51
229 230 4.495422 CATTACTAGTGCGGAGTGAGTTT 58.505 43.478 5.39 0.00 0.00 2.66
251 252 0.302589 ACGCGTCCGAAAAGACAAAC 59.697 50.000 5.58 0.00 36.52 2.93
258 259 4.563061 GTCCGAAAAGACAAACCTAGCTA 58.437 43.478 0.00 0.00 36.73 3.32
259 260 4.626172 GTCCGAAAAGACAAACCTAGCTAG 59.374 45.833 14.20 14.20 36.73 3.42
260 261 3.371285 CCGAAAAGACAAACCTAGCTAGC 59.629 47.826 15.74 6.62 0.00 3.42
261 262 4.246458 CGAAAAGACAAACCTAGCTAGCT 58.754 43.478 23.12 23.12 0.00 3.32
262 263 4.092091 CGAAAAGACAAACCTAGCTAGCTG 59.908 45.833 27.68 13.96 0.00 4.24
263 264 4.625607 AAAGACAAACCTAGCTAGCTGT 57.374 40.909 27.68 15.89 0.00 4.40
264 265 3.601443 AGACAAACCTAGCTAGCTGTG 57.399 47.619 27.68 19.10 0.00 3.66
265 266 2.003301 GACAAACCTAGCTAGCTGTGC 58.997 52.381 27.68 0.00 0.00 4.57
278 279 4.034975 GCTAGCTGTGCATAAAAAGAGAGG 59.965 45.833 7.70 0.00 0.00 3.69
304 305 1.305219 CGGGCATTCACATTCACCGT 61.305 55.000 0.00 0.00 35.47 4.83
305 306 0.451783 GGGCATTCACATTCACCGTC 59.548 55.000 0.00 0.00 0.00 4.79
321 322 2.623889 ACCGTCCTCTGTATCTGTATGC 59.376 50.000 0.00 0.00 0.00 3.14
332 333 5.299949 TGTATCTGTATGCATGACACATCC 58.700 41.667 10.16 0.00 0.00 3.51
343 344 1.134848 TGACACATCCATCGATCGCAA 60.135 47.619 11.09 0.00 0.00 4.85
383 384 2.119801 AAATCATTGCTGGCGAGAGT 57.880 45.000 0.00 0.00 0.00 3.24
384 385 1.376543 AATCATTGCTGGCGAGAGTG 58.623 50.000 0.00 0.00 0.00 3.51
396 397 2.062519 GCGAGAGTGAGGAGTTGAAAC 58.937 52.381 0.00 0.00 0.00 2.78
471 472 2.425773 GCTTGCGCACACTCAACG 60.426 61.111 11.12 0.00 35.78 4.10
480 481 0.852777 CACACTCAACGGTCAGTTCG 59.147 55.000 0.00 0.00 42.02 3.95
497 498 1.442857 CGACGACAGAGTGCAGGTC 60.443 63.158 0.00 0.00 0.00 3.85
499 500 0.109504 GACGACAGAGTGCAGGTCTC 60.110 60.000 0.00 0.00 0.00 3.36
503 504 3.386237 AGAGTGCAGGTCTCGGGC 61.386 66.667 0.00 0.00 37.07 6.13
504 505 3.386237 GAGTGCAGGTCTCGGGCT 61.386 66.667 0.00 0.00 0.00 5.19
505 506 3.363844 GAGTGCAGGTCTCGGGCTC 62.364 68.421 0.00 0.00 0.00 4.70
509 510 3.522731 CAGGTCTCGGGCTCCTCG 61.523 72.222 0.00 0.00 0.00 4.63
516 517 2.513204 CGGGCTCCTCGTCGTCTA 60.513 66.667 0.00 0.00 0.00 2.59
543 544 3.267483 ACTGATTATTTTCACCCGGACG 58.733 45.455 0.73 0.00 0.00 4.79
545 546 2.236644 TGATTATTTTCACCCGGACGGA 59.763 45.455 13.13 0.00 37.50 4.69
546 547 2.389962 TTATTTTCACCCGGACGGAG 57.610 50.000 13.13 5.04 37.50 4.63
548 549 1.486145 ATTTTCACCCGGACGGAGGT 61.486 55.000 13.13 0.00 37.50 3.85
556 557 2.110213 GGACGGAGGTGCACACAA 59.890 61.111 20.43 0.00 34.18 3.33
598 612 2.278596 CGTATGACGCAGGGGACG 60.279 66.667 0.00 0.00 33.65 4.79
625 641 1.425031 CGGTGCAATCATGTCACGG 59.575 57.895 0.00 0.00 35.65 4.94
646 662 1.227147 GATTGATCGGCCCGTTCGA 60.227 57.895 1.63 4.56 41.04 3.71
657 673 3.320078 CGTTCGACCGCCGCATAG 61.320 66.667 0.00 0.00 38.37 2.23
658 674 2.202703 GTTCGACCGCCGCATAGT 60.203 61.111 0.00 0.00 38.37 2.12
659 675 2.103538 TTCGACCGCCGCATAGTC 59.896 61.111 0.00 0.00 38.37 2.59
663 679 3.792053 GACCGCCGCATAGTCCAGG 62.792 68.421 0.00 0.00 0.00 4.45
665 681 2.186903 CGCCGCATAGTCCAGGTT 59.813 61.111 0.00 0.00 0.00 3.50
668 684 1.883084 CCGCATAGTCCAGGTTCGC 60.883 63.158 0.00 0.00 0.00 4.70
669 685 1.141881 CGCATAGTCCAGGTTCGCT 59.858 57.895 0.00 0.00 0.00 4.93
756 795 0.315568 ACCTGCGTGACTGAGAAGTC 59.684 55.000 0.00 0.00 39.15 3.01
757 796 0.730834 CCTGCGTGACTGAGAAGTCG 60.731 60.000 1.74 0.00 41.43 4.18
839 891 3.760035 GCCGACTTCCGCCTGAGA 61.760 66.667 0.00 0.00 36.84 3.27
855 907 6.422400 CCGCCTGAGAAGATATTTCTTTAGTC 59.578 42.308 0.00 0.00 42.34 2.59
875 927 2.637382 TCTACCTTGTCTGCCATGTTGA 59.363 45.455 0.00 0.00 0.00 3.18
877 929 2.165167 ACCTTGTCTGCCATGTTGATG 58.835 47.619 0.00 0.00 0.00 3.07
878 930 2.165167 CCTTGTCTGCCATGTTGATGT 58.835 47.619 0.00 0.00 0.00 3.06
880 932 3.571571 CTTGTCTGCCATGTTGATGTTG 58.428 45.455 0.00 0.00 0.00 3.33
881 933 1.887854 TGTCTGCCATGTTGATGTTGG 59.112 47.619 0.00 0.00 0.00 3.77
882 934 1.888512 GTCTGCCATGTTGATGTTGGT 59.111 47.619 0.00 0.00 32.90 3.67
883 935 1.887854 TCTGCCATGTTGATGTTGGTG 59.112 47.619 0.00 0.00 32.90 4.17
884 936 0.317799 TGCCATGTTGATGTTGGTGC 59.682 50.000 0.00 0.00 32.90 5.01
885 937 0.390209 GCCATGTTGATGTTGGTGCC 60.390 55.000 0.00 0.00 32.90 5.01
904 956 2.572290 CCCCGGCTCCTATAAAAACTG 58.428 52.381 0.00 0.00 0.00 3.16
906 958 2.639065 CCGGCTCCTATAAAAACTGCA 58.361 47.619 0.00 0.00 0.00 4.41
924 976 1.021390 CAAAGTCGGGAAGCGCTCAT 61.021 55.000 12.06 0.00 0.00 2.90
946 1010 0.741221 GGAAGGAGCCGCTGTACTTG 60.741 60.000 0.00 0.00 0.00 3.16
948 1012 0.685097 AAGGAGCCGCTGTACTTGAA 59.315 50.000 0.00 0.00 0.00 2.69
951 1043 1.352156 GAGCCGCTGTACTTGAACCG 61.352 60.000 0.00 0.00 0.00 4.44
1021 1134 1.069978 TGACTCGACCAACAATGCTCA 59.930 47.619 0.00 0.00 0.00 4.26
1077 1190 2.932194 TGCTCTGCCCTGCTTCCT 60.932 61.111 0.00 0.00 0.00 3.36
1078 1191 2.124778 GCTCTGCCCTGCTTCCTC 60.125 66.667 0.00 0.00 0.00 3.71
1079 1192 2.588989 CTCTGCCCTGCTTCCTCC 59.411 66.667 0.00 0.00 0.00 4.30
1080 1193 1.994507 CTCTGCCCTGCTTCCTCCT 60.995 63.158 0.00 0.00 0.00 3.69
1081 1194 1.970352 CTCTGCCCTGCTTCCTCCTC 61.970 65.000 0.00 0.00 0.00 3.71
1082 1195 3.011517 TGCCCTGCTTCCTCCTCC 61.012 66.667 0.00 0.00 0.00 4.30
1090 1203 0.759060 GCTTCCTCCTCCTCCTCCTC 60.759 65.000 0.00 0.00 0.00 3.71
1106 1219 1.202302 TCCTCGCTTCGTTCTGCTATG 60.202 52.381 0.00 0.00 0.00 2.23
1248 1600 0.594602 CACATTGGTGTCTGTGGCTG 59.405 55.000 0.00 0.00 39.24 4.85
1256 1608 2.842462 TCTGTGGCTGGACACGGT 60.842 61.111 14.20 0.00 45.68 4.83
1258 1610 2.842462 TGTGGCTGGACACGGTCT 60.842 61.111 1.97 0.00 44.21 3.85
1260 1612 3.311110 TGGCTGGACACGGTCTCC 61.311 66.667 0.00 0.00 32.47 3.71
1286 1638 5.493809 TGGTGCTACCACTCCTATAAAAAC 58.506 41.667 4.16 0.00 44.79 2.43
1287 1639 5.249852 TGGTGCTACCACTCCTATAAAAACT 59.750 40.000 4.16 0.00 44.79 2.66
1333 1685 0.385751 CGAATGAAGGAGCCGCTCTA 59.614 55.000 19.68 5.19 0.00 2.43
1334 1686 1.859383 GAATGAAGGAGCCGCTCTAC 58.141 55.000 19.68 11.54 0.00 2.59
1335 1687 1.410882 GAATGAAGGAGCCGCTCTACT 59.589 52.381 19.68 6.83 37.68 2.57
1340 1697 3.259876 TGAAGGAGCCGCTCTACTTTAAA 59.740 43.478 19.68 4.01 45.91 1.52
1344 1701 2.344025 AGCCGCTCTACTTTAAAACGG 58.656 47.619 0.00 0.00 41.97 4.44
1374 1732 4.715130 CGGACCCTCCCCCAGACA 62.715 72.222 0.00 0.00 31.13 3.41
1392 1750 3.198635 AGACATCATATATCGGCCAAGGG 59.801 47.826 2.24 0.00 0.00 3.95
1418 1798 1.889891 CAGACGAGAGAAAGAGACGC 58.110 55.000 0.00 0.00 0.00 5.19
1429 1810 0.674895 AAGAGACGCCAATGGAGCAC 60.675 55.000 2.05 0.00 0.00 4.40
1432 1813 3.950794 GACGCCAATGGAGCACCGA 62.951 63.158 2.05 0.00 39.42 4.69
1434 1815 3.512516 GCCAATGGAGCACCGAGC 61.513 66.667 2.05 0.00 46.19 5.03
1462 1855 2.509916 CTCCTGCCCTGCATCCTC 59.490 66.667 0.00 0.00 38.13 3.71
1470 1863 1.633915 CCCTGCATCCTCCTGCTCTT 61.634 60.000 0.00 0.00 42.75 2.85
1485 1878 1.724429 CTCTTGCTCTTCTCAGGTGC 58.276 55.000 0.00 0.00 0.00 5.01
1487 1880 1.633852 CTTGCTCTTCTCAGGTGCGC 61.634 60.000 0.00 0.00 0.00 6.09
1488 1881 2.817396 GCTCTTCTCAGGTGCGCC 60.817 66.667 8.71 8.71 0.00 6.53
1501 1894 4.774503 GCGCCCTCTGCTCTGCTT 62.775 66.667 0.00 0.00 38.05 3.91
1502 1895 2.511145 CGCCCTCTGCTCTGCTTC 60.511 66.667 0.00 0.00 38.05 3.86
1504 1897 2.668120 GCCCTCTGCTCTGCTTCCT 61.668 63.158 0.00 0.00 36.87 3.36
1506 1899 0.107752 CCCTCTGCTCTGCTTCCTTC 60.108 60.000 0.00 0.00 0.00 3.46
1507 1900 0.612229 CCTCTGCTCTGCTTCCTTCA 59.388 55.000 0.00 0.00 0.00 3.02
1508 1901 1.209990 CCTCTGCTCTGCTTCCTTCAT 59.790 52.381 0.00 0.00 0.00 2.57
1509 1902 2.553086 CTCTGCTCTGCTTCCTTCATC 58.447 52.381 0.00 0.00 0.00 2.92
1512 1905 1.209019 TGCTCTGCTTCCTTCATCTCC 59.791 52.381 0.00 0.00 0.00 3.71
1513 1906 1.474855 GCTCTGCTTCCTTCATCTCCC 60.475 57.143 0.00 0.00 0.00 4.30
1514 1907 0.826715 TCTGCTTCCTTCATCTCCCG 59.173 55.000 0.00 0.00 0.00 5.14
1515 1908 0.826715 CTGCTTCCTTCATCTCCCGA 59.173 55.000 0.00 0.00 0.00 5.14
1516 1909 0.826715 TGCTTCCTTCATCTCCCGAG 59.173 55.000 0.00 0.00 0.00 4.63
1520 1913 1.573108 TCCTTCATCTCCCGAGCTTT 58.427 50.000 0.00 0.00 0.00 3.51
1532 1941 2.095516 CCCGAGCTTTTCTTCTTGCTTC 60.096 50.000 0.00 0.00 35.76 3.86
1556 1965 2.841988 ATCTCCGCCTCCAGCCTC 60.842 66.667 0.00 0.00 38.78 4.70
1557 1966 3.387609 ATCTCCGCCTCCAGCCTCT 62.388 63.158 0.00 0.00 38.78 3.69
1574 1983 4.673298 TGCCGACGTCGCCATTGT 62.673 61.111 31.73 0.00 38.18 2.71
1601 2010 0.179124 CAACCTAGTGGAGCGCTCTC 60.179 60.000 34.46 26.18 38.62 3.20
1602 2011 0.323908 AACCTAGTGGAGCGCTCTCT 60.324 55.000 34.46 30.49 39.31 3.10
1632 2041 1.712977 GCGCTTCTGCCATCTCCAAG 61.713 60.000 0.00 0.00 35.36 3.61
1642 2051 2.300967 ATCTCCAAGGCTTGCCCGA 61.301 57.895 21.77 15.95 39.21 5.14
1650 2059 2.761195 GGCTTGCCCGACGAATTCC 61.761 63.158 0.00 0.00 0.00 3.01
1673 2082 3.112075 CGATGTGCCGTTCGTGCT 61.112 61.111 7.06 0.00 0.00 4.40
1703 2113 3.353836 CCGTGGTGCCGTTTCCAG 61.354 66.667 0.00 0.00 34.16 3.86
1714 2124 1.880027 CCGTTTCCAGGAGTTTCAAGG 59.120 52.381 0.00 0.00 0.00 3.61
1740 2154 1.887707 CGCTACAATTCCGGGGCTC 60.888 63.158 0.00 0.00 0.00 4.70
1744 2158 1.558167 TACAATTCCGGGGCTCTGCA 61.558 55.000 0.00 0.00 0.00 4.41
1750 2164 4.785453 CGGGGCTCTGCAGTTCCC 62.785 72.222 27.14 27.14 38.03 3.97
1760 2174 0.687920 TGCAGTTCCCGTACATGGAA 59.312 50.000 9.26 9.26 39.54 3.53
1765 2179 3.684788 CAGTTCCCGTACATGGAAAGAAG 59.315 47.826 13.81 3.41 43.24 2.85
1769 2183 2.355756 CCCGTACATGGAAAGAAGCATG 59.644 50.000 0.00 0.00 0.00 4.06
1771 2185 3.310774 CCGTACATGGAAAGAAGCATGAG 59.689 47.826 0.00 0.00 0.00 2.90
1772 2186 3.310774 CGTACATGGAAAGAAGCATGAGG 59.689 47.826 0.00 0.00 0.00 3.86
1778 2192 2.092699 GGAAAGAAGCATGAGGGCTACT 60.093 50.000 0.00 0.00 45.07 2.57
1779 2193 2.998316 AAGAAGCATGAGGGCTACTC 57.002 50.000 0.00 2.56 45.07 2.59
1789 2203 2.024846 TGAGGGCTACTCTCAAGCTACT 60.025 50.000 9.71 0.00 46.72 2.57
1935 2349 2.725699 CGCGCGCATGTGACTACAA 61.726 57.895 32.61 0.00 40.84 2.41
1955 2369 0.234884 CTTGAAGTTTCCCGCGTCAC 59.765 55.000 4.92 0.00 0.00 3.67
1957 2371 2.663852 AAGTTTCCCGCGTCACCG 60.664 61.111 4.92 0.00 37.07 4.94
1989 2404 5.712217 TTTATTCATAGCTCGAACCAACG 57.288 39.130 0.00 0.00 0.00 4.10
2009 2424 1.006079 GCACTTTTTCTTTGCGCACAC 60.006 47.619 11.12 0.00 0.00 3.82
2010 2425 2.529151 CACTTTTTCTTTGCGCACACT 58.471 42.857 11.12 0.00 0.00 3.55
2011 2426 2.279659 CACTTTTTCTTTGCGCACACTG 59.720 45.455 11.12 0.00 0.00 3.66
2012 2427 2.163412 ACTTTTTCTTTGCGCACACTGA 59.837 40.909 11.12 2.78 0.00 3.41
2013 2428 2.929531 TTTTCTTTGCGCACACTGAA 57.070 40.000 11.12 9.53 0.00 3.02
2014 2429 2.929531 TTTCTTTGCGCACACTGAAA 57.070 40.000 11.12 15.09 0.00 2.69
2015 2430 2.473530 TTCTTTGCGCACACTGAAAG 57.526 45.000 11.12 10.61 42.29 2.62
2030 2445 4.590400 CTGAAAGTCTGAAGCCAATACG 57.410 45.455 0.00 0.00 0.00 3.06
2060 2475 2.180276 TCACCCTTCTTCTCTGCTACC 58.820 52.381 0.00 0.00 0.00 3.18
2062 2477 2.093764 CACCCTTCTTCTCTGCTACCAG 60.094 54.545 0.00 0.00 40.54 4.00
2069 2493 3.628032 TCTTCTCTGCTACCAGTATGTCG 59.372 47.826 0.00 0.00 40.09 4.35
2088 2512 0.741221 GATCTCACCTGACCGCAACC 60.741 60.000 0.00 0.00 0.00 3.77
2121 2545 3.464907 CAGCTGGATATCAGTTGGAGTG 58.535 50.000 5.57 0.00 46.64 3.51
2145 2569 2.693267 AGGCTGTCTATTTTCGACCC 57.307 50.000 0.00 0.00 0.00 4.46
2152 2576 6.039382 GGCTGTCTATTTTCGACCCATTATTT 59.961 38.462 0.00 0.00 0.00 1.40
2155 2579 9.503427 CTGTCTATTTTCGACCCATTATTTTTC 57.497 33.333 0.00 0.00 0.00 2.29
2169 2593 6.808212 CCATTATTTTTCTGCAAGTTGATCGT 59.192 34.615 7.16 0.00 33.76 3.73
2179 2603 3.120511 GCAAGTTGATCGTGAAAGAGACC 60.121 47.826 7.16 0.00 0.00 3.85
2220 2644 5.584649 CGGTGGCTATATCTGAAAAGTGAAA 59.415 40.000 0.00 0.00 0.00 2.69
2279 2704 8.863049 CAAAGAAGATATTTTTGAAACGATGGG 58.137 33.333 0.00 0.00 34.55 4.00
2280 2705 7.100458 AGAAGATATTTTTGAAACGATGGGG 57.900 36.000 0.00 0.00 0.00 4.96
3425 3873 3.080647 GTCCAGATTGGGCGTAAGG 57.919 57.895 0.00 0.00 38.32 2.69
3501 3949 5.170021 TGTTGGCATGCTGATTGATTAAAC 58.830 37.500 18.92 7.34 0.00 2.01
3541 3989 6.223120 TCATCACCATTCATTGTATACGGAG 58.777 40.000 0.00 0.00 0.00 4.63
3542 3990 5.862678 TCACCATTCATTGTATACGGAGA 57.137 39.130 0.00 0.00 0.00 3.71
3543 3991 6.228616 TCACCATTCATTGTATACGGAGAA 57.771 37.500 0.00 2.64 0.00 2.87
3544 3992 6.046593 TCACCATTCATTGTATACGGAGAAC 58.953 40.000 0.00 0.00 0.00 3.01
3545 3993 5.815222 CACCATTCATTGTATACGGAGAACA 59.185 40.000 0.00 0.00 0.00 3.18
3546 3994 6.483307 CACCATTCATTGTATACGGAGAACAT 59.517 38.462 0.00 0.00 0.00 2.71
3547 3995 6.483307 ACCATTCATTGTATACGGAGAACATG 59.517 38.462 0.00 0.00 0.00 3.21
3548 3996 6.483307 CCATTCATTGTATACGGAGAACATGT 59.517 38.462 0.00 0.00 0.00 3.21
3557 4008 4.921470 ACGGAGAACATGTTGTAAATCG 57.079 40.909 17.58 15.33 0.00 3.34
3568 4019 3.284617 GTTGTAAATCGGTTATGGGGCT 58.715 45.455 0.00 0.00 0.00 5.19
3580 4031 3.483869 GGGGCTGGCCGAGATTCT 61.484 66.667 14.63 0.00 36.85 2.40
3620 4071 2.249844 TGTCTGTCCCGGAAAGTTTC 57.750 50.000 0.73 7.09 0.00 2.78
3653 4108 0.404040 TATTCCCGCCCCAATGATCC 59.596 55.000 0.00 0.00 0.00 3.36
3660 4115 1.072159 CCCCAATGATCCCGAGAGC 59.928 63.158 0.00 0.00 0.00 4.09
3689 4175 2.106683 CAAAGGGACGGCGATGGAC 61.107 63.158 16.62 0.00 0.00 4.02
3728 4217 0.179163 GAAAGCGCGGGAAATTCCTG 60.179 55.000 16.30 16.30 45.82 3.86
3769 4266 1.261938 TGCTAGCACTTAGGCGGGAA 61.262 55.000 14.93 0.00 39.27 3.97
3770 4267 0.107848 GCTAGCACTTAGGCGGGAAA 60.108 55.000 10.63 0.00 39.27 3.13
3771 4268 1.941325 CTAGCACTTAGGCGGGAAAG 58.059 55.000 0.00 0.00 39.27 2.62
3772 4269 1.480954 CTAGCACTTAGGCGGGAAAGA 59.519 52.381 0.00 0.00 39.27 2.52
3816 4313 2.010817 GCGTCAAAGTGGCAAAGCG 61.011 57.895 0.00 0.00 0.00 4.68
3835 4332 1.794437 CGATTCAACGTCGAGGTCTCC 60.794 57.143 11.73 0.00 41.40 3.71
3836 4333 0.170561 ATTCAACGTCGAGGTCTCCG 59.829 55.000 11.73 0.00 0.00 4.63
3844 4342 3.063084 GAGGTCTCCGGTGTCGCT 61.063 66.667 0.00 0.00 34.56 4.93
3850 4348 1.734477 CTCCGGTGTCGCTGAACAG 60.734 63.158 0.00 0.00 34.56 3.16
3879 4389 4.026145 GCTCGTGCTAATCTGAATGAACTC 60.026 45.833 1.41 0.00 36.03 3.01
3890 4400 1.060698 GAATGAACTCGCACGCCTAAC 59.939 52.381 0.00 0.00 0.00 2.34
3910 4429 0.598065 CTTGGGCTTTTTCTCCGGTG 59.402 55.000 0.00 0.00 0.00 4.94
3933 4452 1.004927 GCTTGCAGATAACGTTAGCGG 60.005 52.381 17.59 17.59 43.45 5.52
3966 4485 4.217035 TGCTCGCCGCATTATTGT 57.783 50.000 0.00 0.00 45.47 2.71
3967 4486 2.476772 TGCTCGCCGCATTATTGTT 58.523 47.368 0.00 0.00 45.47 2.83
3973 4492 0.668535 GCCGCATTATTGTTCCTCCC 59.331 55.000 0.00 0.00 0.00 4.30
4002 4521 2.356553 CACGTACCACCACCACCG 60.357 66.667 0.00 0.00 0.00 4.94
4154 4678 6.188407 AGAGGTACATAAACTCACTAGCTCA 58.812 40.000 0.00 0.00 35.38 4.26
4155 4679 6.095720 AGAGGTACATAAACTCACTAGCTCAC 59.904 42.308 0.00 0.00 35.38 3.51
4156 4680 5.127356 AGGTACATAAACTCACTAGCTCACC 59.873 44.000 0.00 0.00 0.00 4.02
4157 4681 5.127356 GGTACATAAACTCACTAGCTCACCT 59.873 44.000 0.00 0.00 0.00 4.00
4158 4682 5.331876 ACATAAACTCACTAGCTCACCTC 57.668 43.478 0.00 0.00 0.00 3.85
4159 4683 4.142359 ACATAAACTCACTAGCTCACCTCG 60.142 45.833 0.00 0.00 0.00 4.63
4160 4684 1.912417 AACTCACTAGCTCACCTCGT 58.088 50.000 0.00 0.00 0.00 4.18
4201 4725 2.029290 ACACGGTAGTCTAAGCTTGGTG 60.029 50.000 9.86 0.84 0.00 4.17
4233 4774 1.004918 AGAAAGTGGCCGGACGAAG 60.005 57.895 5.05 0.00 0.00 3.79
4280 4821 3.353029 CGTGTTGCGCCCATGTCA 61.353 61.111 4.18 0.00 0.00 3.58
4309 4850 2.108157 AGGTCACGCAACGCAAGA 59.892 55.556 0.00 0.00 43.62 3.02
4311 4852 1.082756 GGTCACGCAACGCAAGAAG 60.083 57.895 0.00 0.00 43.62 2.85
4389 4939 4.840005 GCTACAGGGACCGCTGGC 62.840 72.222 16.65 8.74 0.00 4.85
4401 4951 3.334054 GCTGGCTCCCTCCCTGTT 61.334 66.667 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.143969 GGAATGCCGACCGTTCTACG 61.144 60.000 7.58 0.00 42.11 3.51
5 6 0.974010 AGGGAATGCCGACCGTTCTA 60.974 55.000 7.58 0.00 39.07 2.10
6 7 1.838073 AAGGGAATGCCGACCGTTCT 61.838 55.000 7.58 0.00 39.07 3.01
7 8 1.366854 GAAGGGAATGCCGACCGTTC 61.367 60.000 0.00 0.00 41.47 3.95
8 9 1.376812 GAAGGGAATGCCGACCGTT 60.377 57.895 0.00 0.00 37.05 4.44
9 10 1.838073 AAGAAGGGAATGCCGACCGT 61.838 55.000 0.00 0.00 33.83 4.83
10 11 0.676782 AAAGAAGGGAATGCCGACCG 60.677 55.000 0.00 0.00 33.83 4.79
11 12 1.545841 AAAAGAAGGGAATGCCGACC 58.454 50.000 0.00 0.00 33.83 4.79
32 33 3.440522 TGTGGTTGATCACACGACAAAAA 59.559 39.130 17.07 2.34 42.05 1.94
33 34 3.010420 TGTGGTTGATCACACGACAAAA 58.990 40.909 17.07 0.00 42.05 2.44
34 35 2.611751 CTGTGGTTGATCACACGACAAA 59.388 45.455 18.68 5.73 42.05 2.83
35 36 2.209273 CTGTGGTTGATCACACGACAA 58.791 47.619 18.68 0.00 42.05 3.18
36 37 1.864565 CTGTGGTTGATCACACGACA 58.135 50.000 17.79 17.79 42.05 4.35
37 38 0.512952 GCTGTGGTTGATCACACGAC 59.487 55.000 10.79 11.85 42.05 4.34
38 39 0.602638 GGCTGTGGTTGATCACACGA 60.603 55.000 10.79 1.54 42.05 4.35
39 40 1.868997 GGCTGTGGTTGATCACACG 59.131 57.895 10.79 7.56 42.05 4.49
40 41 1.868997 CGGCTGTGGTTGATCACAC 59.131 57.895 9.04 9.04 42.05 3.82
41 42 1.965930 GCGGCTGTGGTTGATCACA 60.966 57.895 0.00 0.00 44.36 3.58
42 43 1.514678 TTGCGGCTGTGGTTGATCAC 61.515 55.000 0.00 0.00 38.09 3.06
43 44 1.228094 TTGCGGCTGTGGTTGATCA 60.228 52.632 0.00 0.00 0.00 2.92
44 45 1.210155 GTTGCGGCTGTGGTTGATC 59.790 57.895 0.00 0.00 0.00 2.92
45 46 2.268076 GGTTGCGGCTGTGGTTGAT 61.268 57.895 0.00 0.00 0.00 2.57
46 47 2.904866 GGTTGCGGCTGTGGTTGA 60.905 61.111 0.00 0.00 0.00 3.18
47 48 2.906897 AGGTTGCGGCTGTGGTTG 60.907 61.111 0.00 0.00 0.00 3.77
48 49 2.906897 CAGGTTGCGGCTGTGGTT 60.907 61.111 0.00 0.00 0.00 3.67
49 50 4.954970 CCAGGTTGCGGCTGTGGT 62.955 66.667 0.00 0.00 0.00 4.16
56 57 1.733402 TTTCTTGTGCCAGGTTGCGG 61.733 55.000 0.00 0.00 0.00 5.69
57 58 0.594796 GTTTCTTGTGCCAGGTTGCG 60.595 55.000 0.00 0.00 0.00 4.85
58 59 0.746659 AGTTTCTTGTGCCAGGTTGC 59.253 50.000 0.00 0.00 0.00 4.17
59 60 1.536709 GCAGTTTCTTGTGCCAGGTTG 60.537 52.381 0.00 0.00 33.29 3.77
60 61 0.746659 GCAGTTTCTTGTGCCAGGTT 59.253 50.000 0.00 0.00 33.29 3.50
61 62 0.395586 TGCAGTTTCTTGTGCCAGGT 60.396 50.000 0.00 0.00 39.04 4.00
62 63 0.963962 ATGCAGTTTCTTGTGCCAGG 59.036 50.000 0.00 0.00 39.04 4.45
63 64 1.400629 CGATGCAGTTTCTTGTGCCAG 60.401 52.381 0.00 0.00 39.04 4.85
64 65 0.592637 CGATGCAGTTTCTTGTGCCA 59.407 50.000 0.00 0.00 39.04 4.92
65 66 0.874390 TCGATGCAGTTTCTTGTGCC 59.126 50.000 0.00 0.00 39.04 5.01
66 67 1.727213 GCTCGATGCAGTTTCTTGTGC 60.727 52.381 0.00 0.00 42.31 4.57
67 68 1.135859 GGCTCGATGCAGTTTCTTGTG 60.136 52.381 8.71 0.00 45.15 3.33
68 69 1.160137 GGCTCGATGCAGTTTCTTGT 58.840 50.000 8.71 0.00 45.15 3.16
69 70 1.446907 AGGCTCGATGCAGTTTCTTG 58.553 50.000 8.71 0.00 45.15 3.02
70 71 2.191128 AAGGCTCGATGCAGTTTCTT 57.809 45.000 8.71 1.09 45.15 2.52
71 72 1.808945 CAAAGGCTCGATGCAGTTTCT 59.191 47.619 8.71 0.00 45.15 2.52
72 73 1.537202 ACAAAGGCTCGATGCAGTTTC 59.463 47.619 8.71 0.00 45.15 2.78
73 74 1.537202 GACAAAGGCTCGATGCAGTTT 59.463 47.619 8.71 5.37 45.15 2.66
74 75 1.160137 GACAAAGGCTCGATGCAGTT 58.840 50.000 8.71 0.29 45.15 3.16
75 76 0.674895 GGACAAAGGCTCGATGCAGT 60.675 55.000 8.71 2.57 45.15 4.40
76 77 1.372087 GGGACAAAGGCTCGATGCAG 61.372 60.000 8.71 0.00 45.15 4.41
77 78 1.377202 GGGACAAAGGCTCGATGCA 60.377 57.895 8.71 0.00 45.15 3.96
78 79 2.115291 GGGGACAAAGGCTCGATGC 61.115 63.158 0.00 0.00 41.94 3.91
79 80 1.026718 GTGGGGACAAAGGCTCGATG 61.027 60.000 0.00 0.00 46.06 3.84
80 81 1.299976 GTGGGGACAAAGGCTCGAT 59.700 57.895 0.00 0.00 46.06 3.59
81 82 1.488705 ATGTGGGGACAAAGGCTCGA 61.489 55.000 0.00 0.00 46.06 4.04
82 83 0.609131 AATGTGGGGACAAAGGCTCG 60.609 55.000 0.00 0.00 46.06 5.03
83 84 0.890683 CAATGTGGGGACAAAGGCTC 59.109 55.000 0.00 0.00 46.06 4.70
84 85 0.542702 CCAATGTGGGGACAAAGGCT 60.543 55.000 0.00 0.00 46.06 4.58
85 86 0.541764 TCCAATGTGGGGACAAAGGC 60.542 55.000 0.00 0.00 46.06 4.35
86 87 1.895131 CTTCCAATGTGGGGACAAAGG 59.105 52.381 0.00 0.00 46.06 3.11
87 88 2.297033 CACTTCCAATGTGGGGACAAAG 59.703 50.000 0.00 0.00 46.06 2.77
88 89 2.091610 TCACTTCCAATGTGGGGACAAA 60.092 45.455 0.00 0.00 46.06 2.83
89 90 1.496857 TCACTTCCAATGTGGGGACAA 59.503 47.619 0.00 0.00 46.06 3.18
90 91 1.144691 TCACTTCCAATGTGGGGACA 58.855 50.000 0.00 0.00 38.32 4.02
91 92 1.202879 TGTCACTTCCAATGTGGGGAC 60.203 52.381 0.00 0.00 38.32 4.46
92 93 1.144691 TGTCACTTCCAATGTGGGGA 58.855 50.000 0.00 0.00 38.32 4.81
93 94 1.888512 CTTGTCACTTCCAATGTGGGG 59.111 52.381 0.00 0.00 38.32 4.96
94 95 2.586425 ACTTGTCACTTCCAATGTGGG 58.414 47.619 0.00 0.00 38.32 4.61
95 96 3.243501 CCAACTTGTCACTTCCAATGTGG 60.244 47.826 0.00 0.00 39.43 4.17
96 97 3.631686 TCCAACTTGTCACTTCCAATGTG 59.368 43.478 0.00 0.00 36.82 3.21
97 98 3.885297 CTCCAACTTGTCACTTCCAATGT 59.115 43.478 0.00 0.00 0.00 2.71
98 99 4.136796 TCTCCAACTTGTCACTTCCAATG 58.863 43.478 0.00 0.00 0.00 2.82
99 100 4.392940 CTCTCCAACTTGTCACTTCCAAT 58.607 43.478 0.00 0.00 0.00 3.16
100 101 3.808728 CTCTCCAACTTGTCACTTCCAA 58.191 45.455 0.00 0.00 0.00 3.53
101 102 2.485479 GCTCTCCAACTTGTCACTTCCA 60.485 50.000 0.00 0.00 0.00 3.53
102 103 2.147150 GCTCTCCAACTTGTCACTTCC 58.853 52.381 0.00 0.00 0.00 3.46
103 104 2.147150 GGCTCTCCAACTTGTCACTTC 58.853 52.381 0.00 0.00 0.00 3.01
104 105 1.541233 CGGCTCTCCAACTTGTCACTT 60.541 52.381 0.00 0.00 0.00 3.16
105 106 0.034059 CGGCTCTCCAACTTGTCACT 59.966 55.000 0.00 0.00 0.00 3.41
106 107 0.033504 TCGGCTCTCCAACTTGTCAC 59.966 55.000 0.00 0.00 0.00 3.67
107 108 0.976641 ATCGGCTCTCCAACTTGTCA 59.023 50.000 0.00 0.00 0.00 3.58
108 109 2.961526 TATCGGCTCTCCAACTTGTC 57.038 50.000 0.00 0.00 0.00 3.18
109 110 2.743183 GCATATCGGCTCTCCAACTTGT 60.743 50.000 0.00 0.00 0.00 3.16
110 111 1.869767 GCATATCGGCTCTCCAACTTG 59.130 52.381 0.00 0.00 0.00 3.16
111 112 1.486310 TGCATATCGGCTCTCCAACTT 59.514 47.619 0.00 0.00 34.04 2.66
112 113 1.123077 TGCATATCGGCTCTCCAACT 58.877 50.000 0.00 0.00 34.04 3.16
113 114 1.221414 GTGCATATCGGCTCTCCAAC 58.779 55.000 0.00 0.00 34.04 3.77
114 115 0.829990 TGTGCATATCGGCTCTCCAA 59.170 50.000 0.00 0.00 34.04 3.53
115 116 0.829990 TTGTGCATATCGGCTCTCCA 59.170 50.000 0.00 0.00 34.04 3.86
116 117 1.221414 GTTGTGCATATCGGCTCTCC 58.779 55.000 0.00 0.00 34.04 3.71
117 118 1.863454 CTGTTGTGCATATCGGCTCTC 59.137 52.381 0.00 0.00 34.04 3.20
118 119 1.945387 CTGTTGTGCATATCGGCTCT 58.055 50.000 0.00 0.00 34.04 4.09
119 120 0.305922 GCTGTTGTGCATATCGGCTC 59.694 55.000 15.77 0.00 34.04 4.70
120 121 0.392863 TGCTGTTGTGCATATCGGCT 60.393 50.000 21.42 0.00 38.12 5.52
121 122 0.248215 GTGCTGTTGTGCATATCGGC 60.248 55.000 16.09 16.09 45.23 5.54
122 123 1.085893 TGTGCTGTTGTGCATATCGG 58.914 50.000 0.00 0.00 45.23 4.18
123 124 2.476686 CCTTGTGCTGTTGTGCATATCG 60.477 50.000 0.00 0.00 45.23 2.92
124 125 2.749076 TCCTTGTGCTGTTGTGCATATC 59.251 45.455 0.00 0.00 45.23 1.63
125 126 2.794103 TCCTTGTGCTGTTGTGCATAT 58.206 42.857 0.00 0.00 45.23 1.78
126 127 2.268762 TCCTTGTGCTGTTGTGCATA 57.731 45.000 0.00 0.00 45.23 3.14
127 128 1.401761 TTCCTTGTGCTGTTGTGCAT 58.598 45.000 0.00 0.00 45.23 3.96
128 129 1.337703 GATTCCTTGTGCTGTTGTGCA 59.662 47.619 0.00 0.00 41.05 4.57
129 130 1.337703 TGATTCCTTGTGCTGTTGTGC 59.662 47.619 0.00 0.00 0.00 4.57
130 131 3.713858 TTGATTCCTTGTGCTGTTGTG 57.286 42.857 0.00 0.00 0.00 3.33
131 132 4.147321 AGATTGATTCCTTGTGCTGTTGT 58.853 39.130 0.00 0.00 0.00 3.32
132 133 4.458295 AGAGATTGATTCCTTGTGCTGTTG 59.542 41.667 0.00 0.00 0.00 3.33
133 134 4.458295 CAGAGATTGATTCCTTGTGCTGTT 59.542 41.667 0.00 0.00 0.00 3.16
134 135 4.008330 CAGAGATTGATTCCTTGTGCTGT 58.992 43.478 0.00 0.00 0.00 4.40
135 136 4.008330 ACAGAGATTGATTCCTTGTGCTG 58.992 43.478 0.00 0.00 0.00 4.41
136 137 4.298103 ACAGAGATTGATTCCTTGTGCT 57.702 40.909 0.00 0.00 0.00 4.40
137 138 5.159209 CAAACAGAGATTGATTCCTTGTGC 58.841 41.667 0.00 0.00 0.00 4.57
138 139 6.147581 CACAAACAGAGATTGATTCCTTGTG 58.852 40.000 0.00 0.00 0.00 3.33
139 140 5.829924 ACACAAACAGAGATTGATTCCTTGT 59.170 36.000 0.00 0.00 0.00 3.16
140 141 6.016860 TCACACAAACAGAGATTGATTCCTTG 60.017 38.462 0.00 0.00 0.00 3.61
141 142 6.064060 TCACACAAACAGAGATTGATTCCTT 58.936 36.000 0.00 0.00 0.00 3.36
142 143 5.624159 TCACACAAACAGAGATTGATTCCT 58.376 37.500 0.00 0.00 0.00 3.36
143 144 5.947228 TCACACAAACAGAGATTGATTCC 57.053 39.130 0.00 0.00 0.00 3.01
148 149 9.229784 GCATATATTTCACACAAACAGAGATTG 57.770 33.333 0.00 0.00 0.00 2.67
149 150 8.124823 CGCATATATTTCACACAAACAGAGATT 58.875 33.333 0.00 0.00 0.00 2.40
150 151 7.633621 CGCATATATTTCACACAAACAGAGAT 58.366 34.615 0.00 0.00 0.00 2.75
151 152 6.456853 GCGCATATATTTCACACAAACAGAGA 60.457 38.462 0.30 0.00 0.00 3.10
152 153 5.678483 GCGCATATATTTCACACAAACAGAG 59.322 40.000 0.30 0.00 0.00 3.35
153 154 5.353956 AGCGCATATATTTCACACAAACAGA 59.646 36.000 11.47 0.00 0.00 3.41
154 155 5.572211 AGCGCATATATTTCACACAAACAG 58.428 37.500 11.47 0.00 0.00 3.16
155 156 5.353956 AGAGCGCATATATTTCACACAAACA 59.646 36.000 11.47 0.00 0.00 2.83
156 157 5.678483 CAGAGCGCATATATTTCACACAAAC 59.322 40.000 11.47 0.00 0.00 2.93
157 158 5.353956 ACAGAGCGCATATATTTCACACAAA 59.646 36.000 11.47 0.00 0.00 2.83
158 159 4.875536 ACAGAGCGCATATATTTCACACAA 59.124 37.500 11.47 0.00 0.00 3.33
159 160 4.441792 ACAGAGCGCATATATTTCACACA 58.558 39.130 11.47 0.00 0.00 3.72
160 161 6.587990 AGATACAGAGCGCATATATTTCACAC 59.412 38.462 11.47 0.00 0.00 3.82
161 162 6.691508 AGATACAGAGCGCATATATTTCACA 58.308 36.000 11.47 0.00 0.00 3.58
162 163 7.543868 AGAAGATACAGAGCGCATATATTTCAC 59.456 37.037 11.47 0.00 0.00 3.18
163 164 7.606349 AGAAGATACAGAGCGCATATATTTCA 58.394 34.615 11.47 0.00 0.00 2.69
164 165 8.472683 AAGAAGATACAGAGCGCATATATTTC 57.527 34.615 11.47 9.18 0.00 2.17
165 166 8.839310 AAAGAAGATACAGAGCGCATATATTT 57.161 30.769 11.47 0.73 0.00 1.40
166 167 7.547370 GGAAAGAAGATACAGAGCGCATATATT 59.453 37.037 11.47 5.39 0.00 1.28
167 168 7.038659 GGAAAGAAGATACAGAGCGCATATAT 58.961 38.462 11.47 1.20 0.00 0.86
168 169 6.390721 GGAAAGAAGATACAGAGCGCATATA 58.609 40.000 11.47 0.00 0.00 0.86
169 170 5.233988 GGAAAGAAGATACAGAGCGCATAT 58.766 41.667 11.47 1.21 0.00 1.78
170 171 4.621991 GGAAAGAAGATACAGAGCGCATA 58.378 43.478 11.47 0.00 0.00 3.14
171 172 3.462021 GGAAAGAAGATACAGAGCGCAT 58.538 45.455 11.47 0.00 0.00 4.73
172 173 2.735444 CGGAAAGAAGATACAGAGCGCA 60.735 50.000 11.47 0.00 0.00 6.09
173 174 1.855360 CGGAAAGAAGATACAGAGCGC 59.145 52.381 0.00 0.00 0.00 5.92
174 175 3.065510 TCTCGGAAAGAAGATACAGAGCG 59.934 47.826 0.00 0.00 0.00 5.03
175 176 4.336993 TCTCTCGGAAAGAAGATACAGAGC 59.663 45.833 0.00 0.00 32.23 4.09
176 177 5.503357 CGTCTCTCGGAAAGAAGATACAGAG 60.503 48.000 0.00 0.00 32.23 3.35
177 178 4.333095 CGTCTCTCGGAAAGAAGATACAGA 59.667 45.833 0.00 0.00 32.23 3.41
178 179 4.333095 TCGTCTCTCGGAAAGAAGATACAG 59.667 45.833 0.00 0.00 40.32 2.74
179 180 4.259356 TCGTCTCTCGGAAAGAAGATACA 58.741 43.478 0.00 0.00 40.32 2.29
180 181 4.879104 TCGTCTCTCGGAAAGAAGATAC 57.121 45.455 0.00 0.00 40.32 2.24
181 182 5.892160 TTTCGTCTCTCGGAAAGAAGATA 57.108 39.130 0.00 0.00 40.32 1.98
182 183 4.785511 TTTCGTCTCTCGGAAAGAAGAT 57.214 40.909 0.00 0.00 40.32 2.40
183 184 4.296690 GTTTTCGTCTCTCGGAAAGAAGA 58.703 43.478 0.00 0.00 45.97 2.87
184 185 3.429207 GGTTTTCGTCTCTCGGAAAGAAG 59.571 47.826 0.00 0.00 45.97 2.85
185 186 3.387397 GGTTTTCGTCTCTCGGAAAGAA 58.613 45.455 0.00 0.00 45.97 2.52
186 187 2.288640 GGGTTTTCGTCTCTCGGAAAGA 60.289 50.000 0.00 0.00 45.97 2.52
187 188 2.067013 GGGTTTTCGTCTCTCGGAAAG 58.933 52.381 0.00 0.00 45.97 2.62
188 189 1.413445 TGGGTTTTCGTCTCTCGGAAA 59.587 47.619 0.00 0.00 43.64 3.13
189 190 1.042229 TGGGTTTTCGTCTCTCGGAA 58.958 50.000 0.00 0.00 40.32 4.30
190 191 1.263356 ATGGGTTTTCGTCTCTCGGA 58.737 50.000 0.00 0.00 40.32 4.55
191 192 2.094762 AATGGGTTTTCGTCTCTCGG 57.905 50.000 0.00 0.00 40.32 4.63
192 193 3.846360 AGTAATGGGTTTTCGTCTCTCG 58.154 45.455 0.00 0.00 41.41 4.04
193 194 5.805994 CACTAGTAATGGGTTTTCGTCTCTC 59.194 44.000 0.00 0.00 0.00 3.20
194 195 5.721232 CACTAGTAATGGGTTTTCGTCTCT 58.279 41.667 0.00 0.00 0.00 3.10
195 196 4.329256 GCACTAGTAATGGGTTTTCGTCTC 59.671 45.833 0.00 0.00 0.00 3.36
196 197 4.251268 GCACTAGTAATGGGTTTTCGTCT 58.749 43.478 0.00 0.00 0.00 4.18
197 198 3.061697 CGCACTAGTAATGGGTTTTCGTC 59.938 47.826 0.00 0.00 0.00 4.20
198 199 2.997986 CGCACTAGTAATGGGTTTTCGT 59.002 45.455 0.00 0.00 0.00 3.85
199 200 2.350498 CCGCACTAGTAATGGGTTTTCG 59.650 50.000 0.00 0.00 0.00 3.46
200 201 3.602483 TCCGCACTAGTAATGGGTTTTC 58.398 45.455 0.00 0.00 0.00 2.29
201 202 3.008704 ACTCCGCACTAGTAATGGGTTTT 59.991 43.478 0.00 0.00 0.00 2.43
202 203 2.570302 ACTCCGCACTAGTAATGGGTTT 59.430 45.455 0.00 0.00 0.00 3.27
203 204 2.093658 CACTCCGCACTAGTAATGGGTT 60.094 50.000 0.00 0.00 0.00 4.11
204 205 1.480954 CACTCCGCACTAGTAATGGGT 59.519 52.381 0.00 0.00 0.00 4.51
205 206 1.754803 TCACTCCGCACTAGTAATGGG 59.245 52.381 0.00 0.00 0.00 4.00
206 207 2.427453 ACTCACTCCGCACTAGTAATGG 59.573 50.000 0.00 0.00 0.00 3.16
207 208 3.784701 ACTCACTCCGCACTAGTAATG 57.215 47.619 0.00 0.00 0.00 1.90
208 209 4.803098 AAACTCACTCCGCACTAGTAAT 57.197 40.909 0.00 0.00 0.00 1.89
209 210 4.038282 TGAAAACTCACTCCGCACTAGTAA 59.962 41.667 0.00 0.00 0.00 2.24
210 211 3.570975 TGAAAACTCACTCCGCACTAGTA 59.429 43.478 0.00 0.00 0.00 1.82
211 212 2.364324 TGAAAACTCACTCCGCACTAGT 59.636 45.455 0.00 0.00 0.00 2.57
212 213 2.731976 GTGAAAACTCACTCCGCACTAG 59.268 50.000 0.00 0.00 37.62 2.57
213 214 2.750948 GTGAAAACTCACTCCGCACTA 58.249 47.619 0.00 0.00 37.62 2.74
214 215 1.583054 GTGAAAACTCACTCCGCACT 58.417 50.000 0.00 0.00 37.62 4.40
215 216 0.232303 CGTGAAAACTCACTCCGCAC 59.768 55.000 3.95 0.00 38.40 5.34
216 217 1.495584 GCGTGAAAACTCACTCCGCA 61.496 55.000 3.95 0.00 38.40 5.69
217 218 1.204312 GCGTGAAAACTCACTCCGC 59.796 57.895 3.95 0.00 38.40 5.54
218 219 1.213094 ACGCGTGAAAACTCACTCCG 61.213 55.000 12.93 11.21 38.40 4.63
219 220 0.507358 GACGCGTGAAAACTCACTCC 59.493 55.000 20.70 0.00 38.40 3.85
220 221 0.507358 GGACGCGTGAAAACTCACTC 59.493 55.000 20.70 0.00 38.40 3.51
226 227 1.004715 TCTTTTCGGACGCGTGAAAAC 60.005 47.619 24.98 9.44 38.70 2.43
229 230 0.528033 TGTCTTTTCGGACGCGTGAA 60.528 50.000 20.70 12.92 38.91 3.18
233 234 0.383860 GGTTTGTCTTTTCGGACGCG 60.384 55.000 3.53 3.53 38.91 6.01
236 237 3.400255 AGCTAGGTTTGTCTTTTCGGAC 58.600 45.455 0.00 0.00 36.81 4.79
251 252 5.118990 TCTTTTTATGCACAGCTAGCTAGG 58.881 41.667 18.86 13.53 0.00 3.02
258 259 3.350833 CCCTCTCTTTTTATGCACAGCT 58.649 45.455 0.00 0.00 0.00 4.24
259 260 2.424956 CCCCTCTCTTTTTATGCACAGC 59.575 50.000 0.00 0.00 0.00 4.40
260 261 2.424956 GCCCCTCTCTTTTTATGCACAG 59.575 50.000 0.00 0.00 0.00 3.66
261 262 2.224992 TGCCCCTCTCTTTTTATGCACA 60.225 45.455 0.00 0.00 0.00 4.57
262 263 2.446435 TGCCCCTCTCTTTTTATGCAC 58.554 47.619 0.00 0.00 0.00 4.57
263 264 2.825532 GTTGCCCCTCTCTTTTTATGCA 59.174 45.455 0.00 0.00 0.00 3.96
264 265 2.166459 GGTTGCCCCTCTCTTTTTATGC 59.834 50.000 0.00 0.00 0.00 3.14
265 266 2.423538 CGGTTGCCCCTCTCTTTTTATG 59.576 50.000 0.00 0.00 0.00 1.90
278 279 3.758931 GTGAATGCCCGGTTGCCC 61.759 66.667 0.00 0.00 0.00 5.36
285 286 1.305219 ACGGTGAATGTGAATGCCCG 61.305 55.000 0.00 0.00 39.75 6.13
304 305 4.895297 TGTCATGCATACAGATACAGAGGA 59.105 41.667 0.00 0.00 0.00 3.71
305 306 4.987285 GTGTCATGCATACAGATACAGAGG 59.013 45.833 0.00 0.00 0.00 3.69
321 322 1.458445 GCGATCGATGGATGTGTCATG 59.542 52.381 21.57 0.00 31.51 3.07
332 333 3.728221 TGTTTGTTTGTTTGCGATCGATG 59.272 39.130 21.57 0.00 0.00 3.84
343 344 8.184192 TGATTTTGTGTTGTTTGTTTGTTTGTT 58.816 25.926 0.00 0.00 0.00 2.83
396 397 2.362889 GGGGGTGCATGAGTTGGG 60.363 66.667 0.00 0.00 0.00 4.12
403 404 4.864334 GCGAGGAGGGGGTGCATG 62.864 72.222 0.00 0.00 0.00 4.06
421 422 2.101582 GTCCCGCATTGTCTAGTCTGAT 59.898 50.000 0.00 0.00 0.00 2.90
471 472 0.592148 ACTCTGTCGTCGAACTGACC 59.408 55.000 0.00 0.00 45.23 4.02
480 481 0.109504 GAGACCTGCACTCTGTCGTC 60.110 60.000 0.00 0.00 34.24 4.20
497 498 2.919960 TAGACGACGAGGAGCCCGAG 62.920 65.000 0.00 2.03 0.00 4.63
499 500 1.445716 AATAGACGACGAGGAGCCCG 61.446 60.000 0.00 0.00 0.00 6.13
503 504 3.001838 CAGTCAGAATAGACGACGAGGAG 59.998 52.174 0.00 0.00 43.24 3.69
504 505 2.937149 CAGTCAGAATAGACGACGAGGA 59.063 50.000 0.00 0.00 43.24 3.71
505 506 2.937149 TCAGTCAGAATAGACGACGAGG 59.063 50.000 0.00 0.00 43.24 4.63
509 510 9.302345 TGAAAATAATCAGTCAGAATAGACGAC 57.698 33.333 0.00 0.00 43.24 4.34
516 517 5.590259 CCGGGTGAAAATAATCAGTCAGAAT 59.410 40.000 0.00 0.00 0.00 2.40
568 569 3.605765 CGTCATACGTCTCGTCTCGAGT 61.606 54.545 13.13 3.97 42.66 4.18
579 580 1.226888 GTCCCCTGCGTCATACGTC 60.227 63.158 0.00 0.00 44.73 4.34
580 581 2.890371 GTCCCCTGCGTCATACGT 59.110 61.111 0.00 0.00 44.73 3.57
581 582 2.278596 CGTCCCCTGCGTCATACG 60.279 66.667 0.00 0.00 45.88 3.06
583 584 3.845259 GCCGTCCCCTGCGTCATA 61.845 66.667 0.00 0.00 0.00 2.15
625 641 0.868406 GAACGGGCCGATCAATCATC 59.132 55.000 35.78 12.64 0.00 2.92
646 662 3.849951 CCTGGACTATGCGGCGGT 61.850 66.667 9.78 0.00 0.00 5.68
649 665 1.883084 CGAACCTGGACTATGCGGC 60.883 63.158 0.00 0.00 0.00 6.53
652 668 0.872021 CGAGCGAACCTGGACTATGC 60.872 60.000 0.00 0.00 0.00 3.14
653 669 0.249073 CCGAGCGAACCTGGACTATG 60.249 60.000 0.00 0.00 0.00 2.23
655 671 0.609957 TTCCGAGCGAACCTGGACTA 60.610 55.000 0.00 0.00 0.00 2.59
657 673 0.806492 GATTCCGAGCGAACCTGGAC 60.806 60.000 0.00 0.00 31.79 4.02
658 674 1.515954 GATTCCGAGCGAACCTGGA 59.484 57.895 0.00 0.00 31.79 3.86
659 675 1.878522 CGATTCCGAGCGAACCTGG 60.879 63.158 0.00 0.00 36.65 4.45
663 679 0.315382 CAATGCGATTCCGAGCGAAC 60.315 55.000 0.00 0.00 36.65 3.95
665 681 2.525248 GCAATGCGATTCCGAGCGA 61.525 57.895 0.00 0.00 36.65 4.93
668 684 1.645455 CAGGCAATGCGATTCCGAG 59.355 57.895 0.00 0.00 38.22 4.63
669 685 1.819208 CCAGGCAATGCGATTCCGA 60.819 57.895 0.00 0.00 38.22 4.55
699 738 1.903404 CCTCCACACCTTGTTGGCC 60.903 63.158 0.00 0.00 40.22 5.36
748 787 4.319249 CACGTGTGCGACTTCTCA 57.681 55.556 7.58 0.00 42.00 3.27
832 884 9.471084 GTAGACTAAAGAAATATCTTCTCAGGC 57.529 37.037 0.00 4.80 45.19 4.85
855 907 3.057969 TCAACATGGCAGACAAGGTAG 57.942 47.619 0.00 0.00 0.00 3.18
881 933 0.181824 TTTTATAGGAGCCGGGGCAC 59.818 55.000 12.97 5.43 44.88 5.01
882 934 0.920438 TTTTTATAGGAGCCGGGGCA 59.080 50.000 12.97 0.00 44.88 5.36
883 935 1.133884 AGTTTTTATAGGAGCCGGGGC 60.134 52.381 2.18 0.18 42.33 5.80
884 936 2.572290 CAGTTTTTATAGGAGCCGGGG 58.428 52.381 2.18 0.00 0.00 5.73
885 937 1.947456 GCAGTTTTTATAGGAGCCGGG 59.053 52.381 2.18 0.00 0.00 5.73
904 956 3.028366 GAGCGCTTCCCGACTTTGC 62.028 63.158 13.26 0.00 40.02 3.68
906 958 0.535335 TATGAGCGCTTCCCGACTTT 59.465 50.000 13.26 0.00 40.02 2.66
924 976 0.822164 GTACAGCGGCTCCTTCCTTA 59.178 55.000 0.00 0.00 0.00 2.69
951 1043 1.091537 CTCTCTGTCTGTCCGTCCTC 58.908 60.000 0.00 0.00 0.00 3.71
1021 1134 4.172512 CAGCAGGAGGCCGAGCAT 62.173 66.667 12.90 0.00 46.50 3.79
1077 1190 1.076632 GAAGCGAGGAGGAGGAGGA 60.077 63.158 0.00 0.00 0.00 3.71
1078 1191 2.485795 CGAAGCGAGGAGGAGGAGG 61.486 68.421 0.00 0.00 0.00 4.30
1079 1192 1.316706 AACGAAGCGAGGAGGAGGAG 61.317 60.000 0.00 0.00 0.00 3.69
1080 1193 1.304217 AACGAAGCGAGGAGGAGGA 60.304 57.895 0.00 0.00 0.00 3.71
1081 1194 1.139947 GAACGAAGCGAGGAGGAGG 59.860 63.158 0.00 0.00 0.00 4.30
1082 1195 0.179150 CAGAACGAAGCGAGGAGGAG 60.179 60.000 0.00 0.00 0.00 3.69
1090 1203 3.435566 TCTTACATAGCAGAACGAAGCG 58.564 45.455 0.00 0.00 35.48 4.68
1238 1590 2.357517 CCGTGTCCAGCCACAGAC 60.358 66.667 0.00 0.00 34.98 3.51
1246 1598 2.989824 ACCGGAGACCGTGTCCAG 60.990 66.667 9.46 5.98 46.80 3.86
1248 1600 4.065281 CCACCGGAGACCGTGTCC 62.065 72.222 9.46 4.56 46.80 4.02
1256 1608 2.118732 TGGTAGCACCACCGGAGA 59.881 61.111 9.46 0.00 44.79 3.71
1264 1616 5.742063 AGTTTTTATAGGAGTGGTAGCACC 58.258 41.667 20.99 12.38 39.22 5.01
1265 1617 8.039538 AGTTAGTTTTTATAGGAGTGGTAGCAC 58.960 37.037 17.29 17.29 0.00 4.40
1266 1618 8.142485 AGTTAGTTTTTATAGGAGTGGTAGCA 57.858 34.615 0.00 0.00 0.00 3.49
1267 1619 8.880750 CAAGTTAGTTTTTATAGGAGTGGTAGC 58.119 37.037 0.00 0.00 0.00 3.58
1269 1621 8.323567 CCCAAGTTAGTTTTTATAGGAGTGGTA 58.676 37.037 0.00 0.00 0.00 3.25
1273 1625 8.107729 CCTTCCCAAGTTAGTTTTTATAGGAGT 58.892 37.037 0.00 0.00 0.00 3.85
1286 1638 0.107654 CCCTCGCCTTCCCAAGTTAG 60.108 60.000 0.00 0.00 0.00 2.34
1287 1639 1.559065 CCCCTCGCCTTCCCAAGTTA 61.559 60.000 0.00 0.00 0.00 2.24
1318 1670 1.267121 AAAGTAGAGCGGCTCCTTCA 58.733 50.000 25.49 6.73 0.00 3.02
1357 1714 4.715130 TGTCTGGGGGAGGGTCCG 62.715 72.222 0.00 0.00 37.43 4.79
1359 1716 0.695803 ATGATGTCTGGGGGAGGGTC 60.696 60.000 0.00 0.00 0.00 4.46
1360 1717 0.647738 TATGATGTCTGGGGGAGGGT 59.352 55.000 0.00 0.00 0.00 4.34
1362 1719 3.386078 CGATATATGATGTCTGGGGGAGG 59.614 52.174 0.00 0.00 0.00 4.30
1363 1720 3.386078 CCGATATATGATGTCTGGGGGAG 59.614 52.174 0.00 0.00 0.00 4.30
1364 1721 3.374764 CCGATATATGATGTCTGGGGGA 58.625 50.000 0.00 0.00 0.00 4.81
1365 1722 2.158900 GCCGATATATGATGTCTGGGGG 60.159 54.545 0.00 0.00 0.00 5.40
1374 1732 2.717639 GCCCTTGGCCGATATATGAT 57.282 50.000 0.00 0.00 44.06 2.45
1392 1750 0.169230 TTTCTCTCGTCTGCTCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
1403 1776 1.923204 CATTGGCGTCTCTTTCTCTCG 59.077 52.381 0.00 0.00 0.00 4.04
1404 1777 2.093973 TCCATTGGCGTCTCTTTCTCTC 60.094 50.000 0.00 0.00 0.00 3.20
1411 1791 1.078848 GTGCTCCATTGGCGTCTCT 60.079 57.895 0.00 0.00 0.00 3.10
1418 1798 2.825836 GGCTCGGTGCTCCATTGG 60.826 66.667 5.52 0.00 42.39 3.16
1429 1810 3.815569 GAGCGACGATGAGGCTCGG 62.816 68.421 10.42 4.26 43.10 4.63
1432 1813 2.441164 AGGAGCGACGATGAGGCT 60.441 61.111 0.00 0.00 40.29 4.58
1434 1815 2.279120 GCAGGAGCGACGATGAGG 60.279 66.667 0.00 0.00 0.00 3.86
1462 1855 1.405797 CCTGAGAAGAGCAAGAGCAGG 60.406 57.143 0.00 0.00 45.49 4.85
1470 1863 2.047844 GCGCACCTGAGAAGAGCA 60.048 61.111 0.30 0.00 0.00 4.26
1487 1880 0.107752 GAAGGAAGCAGAGCAGAGGG 60.108 60.000 0.00 0.00 0.00 4.30
1488 1881 0.612229 TGAAGGAAGCAGAGCAGAGG 59.388 55.000 0.00 0.00 0.00 3.69
1497 1890 0.826715 CTCGGGAGATGAAGGAAGCA 59.173 55.000 0.00 0.00 38.80 3.91
1498 1891 0.531753 GCTCGGGAGATGAAGGAAGC 60.532 60.000 0.00 0.00 38.80 3.86
1500 1893 1.573108 AAGCTCGGGAGATGAAGGAA 58.427 50.000 0.00 0.00 38.80 3.36
1501 1894 1.573108 AAAGCTCGGGAGATGAAGGA 58.427 50.000 0.00 0.00 38.80 3.36
1502 1895 2.093235 AGAAAAGCTCGGGAGATGAAGG 60.093 50.000 0.00 0.00 38.80 3.46
1504 1897 3.261897 AGAAGAAAAGCTCGGGAGATGAA 59.738 43.478 0.00 0.00 38.80 2.57
1506 1899 3.258971 AGAAGAAAAGCTCGGGAGATG 57.741 47.619 0.00 0.00 38.80 2.90
1507 1900 3.604582 CAAGAAGAAAAGCTCGGGAGAT 58.395 45.455 0.00 0.00 38.80 2.75
1508 1901 2.872038 GCAAGAAGAAAAGCTCGGGAGA 60.872 50.000 0.00 0.00 37.31 3.71
1509 1902 1.466558 GCAAGAAGAAAAGCTCGGGAG 59.533 52.381 0.00 0.00 0.00 4.30
1512 1905 2.810852 AGAAGCAAGAAGAAAAGCTCGG 59.189 45.455 0.00 0.00 36.07 4.63
1513 1906 3.808095 CAGAAGCAAGAAGAAAAGCTCG 58.192 45.455 0.00 0.00 36.07 5.03
1514 1907 3.252944 AGCAGAAGCAAGAAGAAAAGCTC 59.747 43.478 0.00 0.00 45.49 4.09
1515 1908 3.004524 CAGCAGAAGCAAGAAGAAAAGCT 59.995 43.478 0.00 0.00 45.49 3.74
1516 1909 3.306818 CAGCAGAAGCAAGAAGAAAAGC 58.693 45.455 0.00 0.00 45.49 3.51
1520 1913 1.971481 TGCAGCAGAAGCAAGAAGAA 58.029 45.000 0.00 0.00 45.49 2.52
1532 1941 2.588314 GAGGCGGAGATGCAGCAG 60.588 66.667 4.07 0.00 39.65 4.24
1574 1983 2.094182 GCTCCACTAGGTTGATCGACAA 60.094 50.000 15.11 1.64 35.89 3.18
1585 1994 1.681538 TAAGAGAGCGCTCCACTAGG 58.318 55.000 32.94 0.00 42.30 3.02
1588 1997 2.360801 GAGAATAAGAGAGCGCTCCACT 59.639 50.000 32.94 27.35 42.30 4.00
1601 2010 2.123342 CAGAAGCGCGGAGAGAATAAG 58.877 52.381 8.83 0.00 0.00 1.73
1602 2011 1.802880 GCAGAAGCGCGGAGAGAATAA 60.803 52.381 8.83 0.00 0.00 1.40
1632 2041 2.761195 GGAATTCGTCGGGCAAGCC 61.761 63.158 1.52 1.52 0.00 4.35
1642 2051 2.163818 ACATCGTGTGTGGAATTCGT 57.836 45.000 0.00 0.00 40.28 3.85
1703 2113 2.858646 GCGAAAACAGCCTTGAAACTCC 60.859 50.000 0.00 0.00 0.00 3.85
1714 2124 2.505866 CGGAATTGTAGCGAAAACAGC 58.494 47.619 0.00 0.00 0.00 4.40
1740 2154 0.249120 TCCATGTACGGGAACTGCAG 59.751 55.000 13.48 13.48 39.14 4.41
1744 2158 3.868754 GCTTCTTTCCATGTACGGGAACT 60.869 47.826 16.03 0.00 43.81 3.01
1750 2164 3.310774 CCTCATGCTTCTTTCCATGTACG 59.689 47.826 0.00 0.00 39.74 3.67
1760 2174 2.433970 GAGAGTAGCCCTCATGCTTCTT 59.566 50.000 4.03 0.00 43.12 2.52
1765 2179 1.809651 GCTTGAGAGTAGCCCTCATGC 60.810 57.143 12.83 12.83 46.79 4.06
1769 2183 2.661718 AGTAGCTTGAGAGTAGCCCTC 58.338 52.381 0.00 0.00 39.47 4.30
1771 2185 4.145807 TCATAGTAGCTTGAGAGTAGCCC 58.854 47.826 0.00 0.00 39.47 5.19
1772 2186 5.768317 CTTCATAGTAGCTTGAGAGTAGCC 58.232 45.833 0.00 0.00 39.47 3.93
1778 2192 5.196695 TCTCTGCTTCATAGTAGCTTGAGA 58.803 41.667 0.00 13.03 41.59 3.27
1779 2193 5.512753 TCTCTGCTTCATAGTAGCTTGAG 57.487 43.478 0.00 0.00 39.38 3.02
1789 2203 3.303049 TCTCCATGCTCTCTGCTTCATA 58.697 45.455 0.00 0.00 43.37 2.15
1930 2344 2.096417 CGCGGGAAACTTCAAGTTGTAG 60.096 50.000 2.78 7.87 38.66 2.74
1932 2346 0.661020 CGCGGGAAACTTCAAGTTGT 59.339 50.000 2.78 0.00 38.66 3.32
1935 2349 0.179067 TGACGCGGGAAACTTCAAGT 60.179 50.000 12.47 0.00 0.00 3.16
1955 2369 7.426929 AGCTATGAATAAATAAGTCTTGCGG 57.573 36.000 0.00 0.00 0.00 5.69
1957 2371 8.299262 TCGAGCTATGAATAAATAAGTCTTGC 57.701 34.615 0.00 0.00 0.00 4.01
1989 2404 1.006079 GTGTGCGCAAAGAAAAAGTGC 60.006 47.619 14.00 0.00 39.12 4.40
2009 2424 3.181516 GCGTATTGGCTTCAGACTTTCAG 60.182 47.826 0.00 0.00 0.00 3.02
2010 2425 2.742053 GCGTATTGGCTTCAGACTTTCA 59.258 45.455 0.00 0.00 0.00 2.69
2011 2426 3.003480 AGCGTATTGGCTTCAGACTTTC 58.997 45.455 0.00 0.00 41.39 2.62
2012 2427 3.059352 AGCGTATTGGCTTCAGACTTT 57.941 42.857 0.00 0.00 41.39 2.66
2013 2428 2.770164 AGCGTATTGGCTTCAGACTT 57.230 45.000 0.00 0.00 41.39 3.01
2030 2445 1.168714 AGAAGGGTGAATTCGCAAGC 58.831 50.000 20.06 3.28 37.18 4.01
2060 2475 3.243234 GGTCAGGTGAGATCGACATACTG 60.243 52.174 16.25 16.25 0.00 2.74
2062 2477 2.287069 CGGTCAGGTGAGATCGACATAC 60.287 54.545 0.00 0.00 44.61 2.39
2069 2493 0.741221 GGTTGCGGTCAGGTGAGATC 60.741 60.000 0.00 0.00 0.00 2.75
2088 2512 1.164041 TCCAGCTGATGATGCATGCG 61.164 55.000 17.39 0.00 0.00 4.73
2121 2545 5.280164 GGTCGAAAATAGACAGCCTACTAC 58.720 45.833 0.00 0.00 40.20 2.73
2145 2569 7.538334 TCACGATCAACTTGCAGAAAAATAATG 59.462 33.333 0.00 0.00 0.00 1.90
2152 2576 4.574421 TCTTTCACGATCAACTTGCAGAAA 59.426 37.500 0.00 0.00 0.00 2.52
2155 2579 3.742882 TCTCTTTCACGATCAACTTGCAG 59.257 43.478 0.00 0.00 0.00 4.41
2169 2593 0.609957 TAGGTCGGCGGTCTCTTTCA 60.610 55.000 7.21 0.00 0.00 2.69
2179 2603 1.636340 CGAATGCTTTAGGTCGGCG 59.364 57.895 0.00 0.00 0.00 6.46
2268 2693 2.166829 CAATCAACCCCCATCGTTTCA 58.833 47.619 0.00 0.00 0.00 2.69
2274 2699 0.259938 AGGAGCAATCAACCCCCATC 59.740 55.000 0.00 0.00 0.00 3.51
2301 2734 1.359459 GAAAGGCACGGCGAGGTTAG 61.359 60.000 16.62 0.00 0.00 2.34
3448 3896 1.377202 ACGGGCAATACCAGCAGTG 60.377 57.895 0.00 0.00 42.05 3.66
3501 3949 6.504398 TGGTGATGAATCGCTACTAGTTTAG 58.496 40.000 0.00 0.00 37.46 1.85
3513 3961 7.229530 CGTATACAATGAATGGTGATGAATCG 58.770 38.462 3.32 0.00 0.00 3.34
3541 3989 6.262601 CCCATAACCGATTTACAACATGTTC 58.737 40.000 8.48 0.00 0.00 3.18
3542 3990 5.126384 CCCCATAACCGATTTACAACATGTT 59.874 40.000 4.92 4.92 0.00 2.71
3543 3991 4.642885 CCCCATAACCGATTTACAACATGT 59.357 41.667 0.00 0.00 0.00 3.21
3544 3992 4.499019 GCCCCATAACCGATTTACAACATG 60.499 45.833 0.00 0.00 0.00 3.21
3545 3993 3.634910 GCCCCATAACCGATTTACAACAT 59.365 43.478 0.00 0.00 0.00 2.71
3546 3994 3.018149 GCCCCATAACCGATTTACAACA 58.982 45.455 0.00 0.00 0.00 3.33
3547 3995 3.066203 CAGCCCCATAACCGATTTACAAC 59.934 47.826 0.00 0.00 0.00 3.32
3548 3996 3.283751 CAGCCCCATAACCGATTTACAA 58.716 45.455 0.00 0.00 0.00 2.41
3557 4008 3.774599 CTCGGCCAGCCCCATAACC 62.775 68.421 2.24 0.00 0.00 2.85
3568 4019 2.279741 CGAATTTCAGAATCTCGGCCA 58.720 47.619 2.24 0.00 0.00 5.36
3580 4031 2.673114 GCCGTCGTGCCGAATTTCA 61.673 57.895 0.00 0.00 37.72 2.69
3620 4071 4.061596 GCGGGAATAATCAGAGAAAGGAG 58.938 47.826 0.00 0.00 0.00 3.69
3653 4108 2.335712 GGGTGCCTTTTGCTCTCGG 61.336 63.158 0.00 0.00 42.00 4.63
3660 4115 0.392706 GTCCCTTTGGGTGCCTTTTG 59.607 55.000 2.25 0.00 44.74 2.44
3719 4208 4.022849 CCAGTCAAACACTCCAGGAATTTC 60.023 45.833 0.00 0.00 30.26 2.17
3720 4209 3.891366 CCAGTCAAACACTCCAGGAATTT 59.109 43.478 0.00 0.00 30.26 1.82
3728 4217 3.541632 TGTTTCTCCAGTCAAACACTCC 58.458 45.455 0.00 0.00 37.54 3.85
3769 4266 4.351874 TCCCTGACACGATTTCTTTCTT 57.648 40.909 0.00 0.00 0.00 2.52
3770 4267 4.351874 TTCCCTGACACGATTTCTTTCT 57.648 40.909 0.00 0.00 0.00 2.52
3771 4268 4.455877 ACATTCCCTGACACGATTTCTTTC 59.544 41.667 0.00 0.00 0.00 2.62
3772 4269 4.398319 ACATTCCCTGACACGATTTCTTT 58.602 39.130 0.00 0.00 0.00 2.52
3816 4313 1.794437 CGGAGACCTCGACGTTGAATC 60.794 57.143 6.99 7.69 0.00 2.52
3835 4332 2.661537 TGCTGTTCAGCGACACCG 60.662 61.111 17.95 0.00 37.69 4.94
3836 4333 2.939022 GTGCTGTTCAGCGACACC 59.061 61.111 17.95 2.46 37.69 4.16
3857 4355 4.205996 CGAGTTCATTCAGATTAGCACGAG 59.794 45.833 0.00 0.00 0.00 4.18
3858 4356 4.105486 CGAGTTCATTCAGATTAGCACGA 58.895 43.478 0.00 0.00 0.00 4.35
3859 4357 3.302092 GCGAGTTCATTCAGATTAGCACG 60.302 47.826 0.00 0.00 0.00 5.34
3860 4358 3.618594 TGCGAGTTCATTCAGATTAGCAC 59.381 43.478 0.00 0.00 0.00 4.40
3861 4359 3.618594 GTGCGAGTTCATTCAGATTAGCA 59.381 43.478 0.00 0.00 0.00 3.49
3879 4389 3.124921 CCCAAGGTTAGGCGTGCG 61.125 66.667 0.00 0.00 0.00 5.34
3890 4400 0.539669 ACCGGAGAAAAAGCCCAAGG 60.540 55.000 9.46 0.00 0.00 3.61
3910 4429 2.223044 GCTAACGTTATCTGCAAGCCAC 60.223 50.000 8.76 0.00 0.00 5.01
3965 4484 1.201429 TGGAGGAAGCTGGGAGGAAC 61.201 60.000 0.00 0.00 0.00 3.62
3966 4485 1.160870 TGGAGGAAGCTGGGAGGAA 59.839 57.895 0.00 0.00 0.00 3.36
3967 4486 1.613630 GTGGAGGAAGCTGGGAGGA 60.614 63.158 0.00 0.00 0.00 3.71
3973 4492 0.389948 GGTACGTGTGGAGGAAGCTG 60.390 60.000 0.00 0.00 0.00 4.24
4008 4527 2.408835 CCCAATCATTCGTGCGGC 59.591 61.111 0.00 0.00 0.00 6.53
4063 4582 2.810400 GCTAGTGGCCAAGACAACTCAA 60.810 50.000 7.24 0.00 34.27 3.02
4154 4678 2.752238 CGAGCCTGAGGACGAGGT 60.752 66.667 0.65 0.00 32.60 3.85
4155 4679 2.752238 ACGAGCCTGAGGACGAGG 60.752 66.667 21.07 0.58 0.00 4.63
4156 4680 2.487428 CACGAGCCTGAGGACGAG 59.513 66.667 21.07 12.02 0.00 4.18
4157 4681 3.749064 GCACGAGCCTGAGGACGA 61.749 66.667 21.07 0.00 33.58 4.20
4176 4700 1.473278 AGCTTAGACTACCGTGTCAGC 59.527 52.381 0.00 0.00 39.27 4.26
4190 4714 1.812571 ACGATTTGGCACCAAGCTTAG 59.187 47.619 0.00 0.00 44.79 2.18
4280 4821 1.274447 GCGTGACCTGTTACCTAACCT 59.726 52.381 0.00 0.00 35.37 3.50
4389 4939 2.362077 CAACAAACAAACAGGGAGGGAG 59.638 50.000 0.00 0.00 0.00 4.30
4398 4948 3.066064 CGATGGGTCTCAACAAACAAACA 59.934 43.478 0.00 0.00 0.00 2.83
4399 4949 3.628017 CGATGGGTCTCAACAAACAAAC 58.372 45.455 0.00 0.00 0.00 2.93
4400 4950 2.034053 GCGATGGGTCTCAACAAACAAA 59.966 45.455 0.00 0.00 0.00 2.83
4401 4951 1.606668 GCGATGGGTCTCAACAAACAA 59.393 47.619 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.