AutoCloner

Multiple sequence alignment - TraesCS3A01G373900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G373900	chr3A	100.000	2429	0	0	1	2429	623615318	623617746	0.000000e+00	4486.0
1	TraesCS3A01G373900	chr3A	95.161	682	32	1	1748	2429	623598473	623597793	0.000000e+00	1075.0
2	TraesCS3A01G373900	chr3B	88.074	1568	118	33	2	1514	641665584	641667137	0.000000e+00	1796.0
3	TraesCS3A01G373900	chr3B	88.235	884	88	15	1557	2429	69351790	69350912	0.000000e+00	1042.0
4	TraesCS3A01G373900	chr3B	87.255	102	8	5	351	450	423810131	423810229	7.100000e-21	111.0
5	TraesCS3A01G373900	chr3D	87.732	1076	87	22	456	1514	480849577	480850624	0.000000e+00	1214.0
6	TraesCS3A01G373900	chr3D	87.952	83	10	0	361	443	473746063	473745981	5.530000e-17	99.0
7	TraesCS3A01G373900	chr7A	88.697	867	93	5	1566	2429	732303373	732302509	0.000000e+00	1053.0
8	TraesCS3A01G373900	chr7A	86.747	83	11	0	361	443	538573021	538572939	2.570000e-15	93.5
9	TraesCS3A01G373900	chrUn	88.532	872	95	5	1561	2429	254170852	254169983	0.000000e+00	1051.0
10	TraesCS3A01G373900	chrUn	88.581	867	94	5	1566	2429	275266934	275266070	0.000000e+00	1048.0
11	TraesCS3A01G373900	chrUn	88.417	872	96	5	1561	2429	83808752	83807883	0.000000e+00	1046.0
12	TraesCS3A01G373900	chrUn	88.417	872	96	5	1561	2429	241100692	241099823	0.000000e+00	1046.0
13	TraesCS3A01G373900	chrUn	88.303	872	97	5	1561	2429	83856039	83855170	0.000000e+00	1040.0
14	TraesCS3A01G373900	chr7B	85.860	884	109	16	1557	2429	415179758	415180636	0.000000e+00	926.0
15	TraesCS3A01G373900	chr7B	87.368	95	12	0	349	443	482484942	482485036	2.550000e-20	110.0
16	TraesCS3A01G373900	chr7B	90.541	74	7	0	370	443	724956448	724956375	5.530000e-17	99.0
17	TraesCS3A01G373900	chr5D	82.168	286	38	11	1139	1413	538786126	538786409	1.450000e-57	233.0
18	TraesCS3A01G373900	chr5B	81.818	286	39	11	1139	1413	680356648	680356931	6.760000e-56	228.0
19	TraesCS3A01G373900	chr4A	80.464	302	43	13	1139	1429	629862902	629862606	1.460000e-52	217.0
20	TraesCS3A01G373900	chr2D	80.634	284	46	3	1139	1413	375027172	375027455	6.800000e-51	211.0
21	TraesCS3A01G373900	chr2A	82.143	252	36	3	1139	1381	507376519	507376770	8.800000e-50	207.0
22	TraesCS3A01G373900	chr2B	79.225	284	50	3	1139	1413	445172645	445172928	3.190000e-44	189.0
23	TraesCS3A01G373900	chr1A	89.888	89	9	0	358	446	568391202	568391290	5.490000e-22	115.0
24	TraesCS3A01G373900	chr7D	86.813	91	12	0	357	447	634664785	634664875	4.270000e-18	102.0
25	TraesCS3A01G373900	chr1D	86.170	94	10	2	358	450	59951847	59951938	5.530000e-17	99.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G373900	chr3A	623615318	623617746	2428	False	4486	4486	100.000	1	2429	1	chr3A.!!$F1	2428
1	TraesCS3A01G373900	chr3A	623597793	623598473	680	True	1075	1075	95.161	1748	2429	1	chr3A.!!$R1	681
2	TraesCS3A01G373900	chr3B	641665584	641667137	1553	False	1796	1796	88.074	2	1514	1	chr3B.!!$F2	1512
3	TraesCS3A01G373900	chr3B	69350912	69351790	878	True	1042	1042	88.235	1557	2429	1	chr3B.!!$R1	872
4	TraesCS3A01G373900	chr3D	480849577	480850624	1047	False	1214	1214	87.732	456	1514	1	chr3D.!!$F1	1058
5	TraesCS3A01G373900	chr7A	732302509	732303373	864	True	1053	1053	88.697	1566	2429	1	chr7A.!!$R2	863
6	TraesCS3A01G373900	chrUn	254169983	254170852	869	True	1051	1051	88.532	1561	2429	1	chrUn.!!$R4	868
7	TraesCS3A01G373900	chrUn	275266070	275266934	864	True	1048	1048	88.581	1566	2429	1	chrUn.!!$R5	863
8	TraesCS3A01G373900	chrUn	83807883	83808752	869	True	1046	1046	88.417	1561	2429	1	chrUn.!!$R1	868
9	TraesCS3A01G373900	chrUn	241099823	241100692	869	True	1046	1046	88.417	1561	2429	1	chrUn.!!$R3	868
10	TraesCS3A01G373900	chrUn	83855170	83856039	869	True	1040	1040	88.303	1561	2429	1	chrUn.!!$R2	868
11	TraesCS3A01G373900	chr7B	415179758	415180636	878	False	926	926	85.860	1557	2429	1	chr7B.!!$F1	872

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
655	682	0.178973	TCTGTCCCGTGGAGAGAACA	60.179	55.0	14.66	0.89	46.82	3.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1705	1766	0.179059	ATCGCCAACAGACACACACA	60.179	50.0	0.0	0.0	0.0	3.72	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
95	96	9.719279	AAATTGAAATGCACAAACACATTTTAG	57.281	25.926	0.00	0.00	44.36	1.85
143	147	7.439056	AGGCTTGAACACTTTTCAAAATACATG	59.561	33.333	1.42	0.00	37.89	3.21
211	232	6.870971	ACGCTTATTTAAGTTTCTTGGACA	57.129	33.333	0.00	0.00	35.75	4.02
227	248	5.982516	TCTTGGACATGTTTCAAAAATTCCG	59.017	36.000	0.00	0.00	0.00	4.30
233	254	4.737855	TGTTTCAAAAATTCCGGTGGAA	57.262	36.364	0.00	0.00	46.39	3.53
250	271	7.612244	TCCGGTGGAATTTCTATTTACATGAAA	59.388	33.333	0.00	0.00	34.75	2.69
359	385	8.943594	AGGATGTTTTACCCAAAATACACTAA	57.056	30.769	0.00	0.00	36.10	2.24
366	392	7.519347	TTACCCAAAATACACTAATCCCTCT	57.481	36.000	0.00	0.00	0.00	3.69
369	395	6.160459	ACCCAAAATACACTAATCCCTCTGAT	59.840	38.462	0.00	0.00	34.22	2.90
419	445	5.107607	ACAAAGTTGTACTAAATGAGCGACG	60.108	40.000	0.00	0.00	40.16	5.12
422	448	4.798907	AGTTGTACTAAATGAGCGACGATG	59.201	41.667	0.00	0.00	0.00	3.84
423	449	4.625972	TGTACTAAATGAGCGACGATGA	57.374	40.909	0.00	0.00	0.00	2.92
428	454	8.508875	TGTACTAAATGAGCGACGATGAATATA	58.491	33.333	0.00	0.00	0.00	0.86
513	540	9.383462	CTCGAGTACACTAATATGTATGAACAC	57.617	37.037	3.62	0.00	38.78	3.32
597	624	2.001803	CCAGCCCAATTGAGGAGGA	58.998	57.895	7.12	0.00	0.00	3.71
624	651	2.650163	CGAGGCCGCGCTATAATAC	58.350	57.895	17.99	0.00	0.00	1.89
628	655	1.616865	AGGCCGCGCTATAATACAGAA	59.383	47.619	5.56	0.00	0.00	3.02
644	671	1.216710	GAAGCACTCCTCTGTCCCG	59.783	63.158	0.00	0.00	0.00	5.14
645	672	1.534235	AAGCACTCCTCTGTCCCGT	60.534	57.895	0.00	0.00	0.00	5.28
655	682	0.178973	TCTGTCCCGTGGAGAGAACA	60.179	55.000	14.66	0.89	46.82	3.18
661	688	4.647654	GTGGAGAGAACACGCGAA	57.352	55.556	15.93	0.00	0.00	4.70
662	689	2.435741	GTGGAGAGAACACGCGAAG	58.564	57.895	15.93	7.57	0.00	3.79
664	691	1.068748	GTGGAGAGAACACGCGAAGTA	60.069	52.381	15.93	0.00	0.00	2.24
665	692	1.816835	TGGAGAGAACACGCGAAGTAT	59.183	47.619	15.93	3.39	0.00	2.12
667	694	2.853003	GGAGAGAACACGCGAAGTATTC	59.147	50.000	15.93	11.78	43.09	1.75
669	696	4.167268	GAGAGAACACGCGAAGTATTCTT	58.833	43.478	15.93	5.32	45.76	2.52
670	697	3.921021	AGAGAACACGCGAAGTATTCTTG	59.079	43.478	15.93	0.00	45.76	3.02
681	717	2.069273	AGTATTCTTGCTGCACGACAC	58.931	47.619	8.46	9.62	0.00	3.67
682	718	1.067693	TATTCTTGCTGCACGACACG	58.932	50.000	8.46	0.00	0.00	4.49
699	735	2.503375	GTCGTCACCTGTACGGCG	60.503	66.667	4.80	4.80	40.68	6.46
744	784	4.071423	TCTCTCTCGATGAAGCAGGATAG	58.929	47.826	0.00	0.00	0.00	2.08
753	793	4.679373	TGAAGCAGGATAGGTTCTGATC	57.321	45.455	7.31	0.00	44.18	2.92
754	794	3.068732	TGAAGCAGGATAGGTTCTGATCG	59.931	47.826	7.31	0.00	44.18	3.69
814	854	1.027357	CTTCGATGGCCATTTCCCAG	58.973	55.000	21.84	8.22	35.48	4.45
818	858	0.468771	GATGGCCATTTCCCAGGGAG	60.469	60.000	21.84	0.00	35.48	4.30
858	898	1.781555	CGAAGTTGCTACTGGTGCG	59.218	57.895	0.36	0.57	34.01	5.34
869	909	2.741985	TGGTGCGGCTCAACATCG	60.742	61.111	0.00	0.00	37.50	3.84
882	922	3.913573	CATCGCACGCACGCCTAC	61.914	66.667	0.00	0.00	0.00	3.18
884	924	3.642778	ATCGCACGCACGCCTACTT	62.643	57.895	0.00	0.00	0.00	2.24
894	934	1.008194	CGCCTACTTATACCGCGCA	60.008	57.895	8.75	0.00	36.02	6.09
897	937	1.273455	CCTACTTATACCGCGCACGC	61.273	60.000	8.75	4.64	38.22	5.34
1010	1057	1.745115	GCAACAGCATGCGTCCCTA	60.745	57.895	13.01	0.00	42.53	3.53
1429	1487	3.121929	AGGAAGAGGAGGTGCATTAGA	57.878	47.619	0.00	0.00	0.00	2.10
1443	1503	6.043706	AGGTGCATTAGATTAGCTAGACCAAT	59.956	38.462	0.00	0.00	0.00	3.16
1444	1504	6.370166	GGTGCATTAGATTAGCTAGACCAATC	59.630	42.308	0.00	0.00	0.00	2.67
1464	1524	0.655733	CGTGCCAGAGTTTTCGTGTT	59.344	50.000	0.00	0.00	0.00	3.32
1478	1539	1.814211	CGTGTTGTGTCCGACGGTTC	61.814	60.000	14.79	9.17	0.00	3.62
1489	1550	1.853319	GACGGTTCGTGTCTTGCAG	59.147	57.895	0.00	0.00	41.37	4.41
1495	1556	2.412089	GGTTCGTGTCTTGCAGATGTAC	59.588	50.000	0.00	0.00	0.00	2.90
1510	1571	1.034356	TGTACGGTGCTGTGTAGTGT	58.966	50.000	0.00	0.00	0.00	3.55
1514	1575	1.000607	ACGGTGCTGTGTAGTGTAGTG	60.001	52.381	0.00	0.00	0.00	2.74
1515	1576	1.668919	CGGTGCTGTGTAGTGTAGTGG	60.669	57.143	0.00	0.00	0.00	4.00
1516	1577	1.616865	GGTGCTGTGTAGTGTAGTGGA	59.383	52.381	0.00	0.00	0.00	4.02
1517	1578	2.352814	GGTGCTGTGTAGTGTAGTGGAG	60.353	54.545	0.00	0.00	0.00	3.86
1518	1579	2.296471	GTGCTGTGTAGTGTAGTGGAGT	59.704	50.000	0.00	0.00	0.00	3.85
1519	1580	3.504906	GTGCTGTGTAGTGTAGTGGAGTA	59.495	47.826	0.00	0.00	0.00	2.59
1520	1581	3.756963	TGCTGTGTAGTGTAGTGGAGTAG	59.243	47.826	0.00	0.00	0.00	2.57
1521	1582	3.757493	GCTGTGTAGTGTAGTGGAGTAGT	59.243	47.826	0.00	0.00	0.00	2.73
1522	1583	4.940046	GCTGTGTAGTGTAGTGGAGTAGTA	59.060	45.833	0.00	0.00	0.00	1.82
1523	1584	5.589452	GCTGTGTAGTGTAGTGGAGTAGTAT	59.411	44.000	0.00	0.00	0.00	2.12
1524	1585	6.238429	GCTGTGTAGTGTAGTGGAGTAGTATC	60.238	46.154	0.00	0.00	0.00	2.24
1525	1586	6.955364	TGTGTAGTGTAGTGGAGTAGTATCT	58.045	40.000	0.00	0.00	0.00	1.98
1526	1587	6.822170	TGTGTAGTGTAGTGGAGTAGTATCTG	59.178	42.308	0.00	0.00	0.00	2.90
1527	1588	7.046652	GTGTAGTGTAGTGGAGTAGTATCTGA	58.953	42.308	0.00	0.00	0.00	3.27
1528	1589	7.716123	GTGTAGTGTAGTGGAGTAGTATCTGAT	59.284	40.741	0.00	0.00	0.00	2.90
1529	1590	7.715686	TGTAGTGTAGTGGAGTAGTATCTGATG	59.284	40.741	0.00	0.00	0.00	3.07
1530	1591	6.065374	AGTGTAGTGGAGTAGTATCTGATGG	58.935	44.000	0.00	0.00	0.00	3.51
1531	1592	5.241949	GTGTAGTGGAGTAGTATCTGATGGG	59.758	48.000	0.00	0.00	0.00	4.00
1532	1593	3.235200	AGTGGAGTAGTATCTGATGGGC	58.765	50.000	0.00	0.00	0.00	5.36
1533	1594	3.116939	AGTGGAGTAGTATCTGATGGGCT	60.117	47.826	0.00	0.00	0.00	5.19
1534	1595	4.106502	AGTGGAGTAGTATCTGATGGGCTA	59.893	45.833	0.00	0.00	0.00	3.93
1535	1596	4.833380	GTGGAGTAGTATCTGATGGGCTAA	59.167	45.833	0.00	0.00	0.00	3.09
1536	1597	5.482175	GTGGAGTAGTATCTGATGGGCTAAT	59.518	44.000	0.00	0.14	0.00	1.73
1537	1598	6.663953	GTGGAGTAGTATCTGATGGGCTAATA	59.336	42.308	0.00	0.00	0.00	0.98
1538	1599	7.178628	GTGGAGTAGTATCTGATGGGCTAATAA	59.821	40.741	0.00	0.00	0.00	1.40
1539	1600	7.397476	TGGAGTAGTATCTGATGGGCTAATAAG	59.603	40.741	0.00	0.00	0.00	1.73
1730	1795	1.374252	GTCTGTTGGCGATCCGTGT	60.374	57.895	0.00	0.00	34.14	4.49
1761	1828	0.955428	GTCGCCTGGTTGATGCTCAA	60.955	55.000	0.00	0.00	33.32	3.02
1914	1982	3.487942	TGATCGTTGTAACAGTTGACACG	59.512	43.478	0.00	1.59	0.00	4.49
1929	1997	2.726274	ACGGTCGAGTTCGTGCTT	59.274	55.556	7.45	0.00	38.25	3.91
1947	2016	4.344865	GAGGCAACAAGGGGGCGA	62.345	66.667	0.00	0.00	41.41	5.54
1948	2017	4.351054	AGGCAACAAGGGGGCGAG	62.351	66.667	0.00	0.00	41.41	5.03
1968	2037	2.671963	AGCGCCGGAAAAACCTCC	60.672	61.111	5.05	0.00	36.31	4.30
2074	2147	2.665603	GGAAAGGAGAGCTGCCGT	59.334	61.111	0.00	0.00	0.00	5.68
2149	2222	1.596203	CGGCGATGTCCATCATGCT	60.596	57.895	0.00	0.00	37.69	3.79

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	9.515020	TCATGTAAGTTTGAAAATTGAGTGTTC	57.485	29.630	0.35	0.00	0.00	3.18
68	69	8.983307	AAAATGTGTTTGTGCATTTCAATTTT	57.017	23.077	0.00	0.00	42.39	1.82
211	232	4.946478	TCCACCGGAATTTTTGAAACAT	57.054	36.364	9.46	0.00	0.00	2.71
321	346	9.476202	GGGTAAAACATCCTAATATTTTCATGC	57.524	33.333	0.00	0.00	0.00	4.06
339	365	8.357290	AGGGATTAGTGTATTTTGGGTAAAAC	57.643	34.615	0.00	0.00	38.50	2.43
359	385	7.334090	CGACAATTAATATGGATCAGAGGGAT	58.666	38.462	0.00	0.00	39.53	3.85
366	392	7.984422	AATCAGCGACAATTAATATGGATCA	57.016	32.000	0.00	0.00	0.00	2.92
369	395	7.806690	GCTAAATCAGCGACAATTAATATGGA	58.193	34.615	0.00	0.00	41.37	3.41
412	438	4.034163	TCCGATCTATATTCATCGTCGCTC	59.966	45.833	12.49	0.00	40.28	5.03
414	440	4.274421	TCCGATCTATATTCATCGTCGC	57.726	45.455	12.49	0.00	40.28	5.19
419	445	7.883391	TTACTCCCTCCGATCTATATTCATC	57.117	40.000	0.00	0.00	0.00	2.92
428	454	7.072581	AGGAAAAATTATTACTCCCTCCGATCT	59.927	37.037	0.00	0.00	0.00	2.75
489	516	9.170584	CTGTGTTCATACATATTAGTGTACTCG	57.829	37.037	0.00	0.00	37.40	4.18
547	574	5.437060	AGTAGTGCTGTTTCTTTTCTTCCA	58.563	37.500	0.00	0.00	0.00	3.53
588	615	3.691342	CCCACGCGTCCTCCTCAA	61.691	66.667	9.86	0.00	0.00	3.02
628	655	2.118513	ACGGGACAGAGGAGTGCT	59.881	61.111	0.00	0.00	0.00	4.40
644	671	0.318784	ACTTCGCGTGTTCTCTCCAC	60.319	55.000	5.77	0.00	0.00	4.02
645	672	1.241165	TACTTCGCGTGTTCTCTCCA	58.759	50.000	5.77	0.00	0.00	3.86
652	679	2.157668	CAGCAAGAATACTTCGCGTGTT	59.842	45.455	5.77	0.00	33.70	3.32
655	682	0.721718	GCAGCAAGAATACTTCGCGT	59.278	50.000	5.77	0.00	33.70	6.01
658	685	1.992667	TCGTGCAGCAAGAATACTTCG	59.007	47.619	8.76	0.00	33.70	3.79
659	686	2.736721	TGTCGTGCAGCAAGAATACTTC	59.263	45.455	13.01	0.18	33.70	3.01
660	687	2.480419	GTGTCGTGCAGCAAGAATACTT	59.520	45.455	13.01	0.00	36.73	2.24
661	688	2.069273	GTGTCGTGCAGCAAGAATACT	58.931	47.619	13.01	0.00	0.00	2.12
662	689	1.201812	CGTGTCGTGCAGCAAGAATAC	60.202	52.381	13.01	13.35	0.00	1.89
664	691	0.880278	ACGTGTCGTGCAGCAAGAAT	60.880	50.000	13.01	0.00	39.18	2.40
665	692	1.487452	GACGTGTCGTGCAGCAAGAA	61.487	55.000	13.01	1.23	41.37	2.52
667	694	2.546321	GACGTGTCGTGCAGCAAG	59.454	61.111	0.00	0.00	41.37	4.01
681	717	2.503375	GCCGTACAGGTGACGACG	60.503	66.667	0.00	0.00	42.98	5.12
744	784	3.994392	TGCAAAGTAGAACGATCAGAACC	59.006	43.478	0.00	0.00	0.00	3.62
814	854	2.577593	GTACGTGGCTGGTCTCCC	59.422	66.667	0.00	0.00	0.00	4.30
818	858	2.506438	GAGCGTACGTGGCTGGTC	60.506	66.667	18.91	7.48	41.72	4.02
843	883	2.358737	GCCGCACCAGTAGCAACT	60.359	61.111	0.00	0.00	35.91	3.16
858	898	3.422303	TGCGTGCGATGTTGAGCC	61.422	61.111	0.00	0.00	0.00	4.70
869	909	0.850856	GTATAAGTAGGCGTGCGTGC	59.149	55.000	0.00	0.00	0.00	5.34
897	937	0.644331	CTTGAGAATCGCAGAGCACG	59.356	55.000	0.00	0.00	43.63	5.34
940	984	0.712775	CAGAACTTCGCTTGCGAGAG	59.287	55.000	17.06	17.74	0.00	3.20
941	985	0.032130	ACAGAACTTCGCTTGCGAGA	59.968	50.000	17.06	8.37	0.00	4.04
1147	1196	2.558313	GAGCTTCACCTTGTGCGC	59.442	61.111	0.00	0.00	32.98	6.09
1353	1411	1.801913	GACGCAGGTGAGCACGTAG	60.802	63.158	2.84	0.00	39.16	3.51
1429	1487	2.224305	GGCACGGATTGGTCTAGCTAAT	60.224	50.000	0.00	0.00	0.00	1.73
1443	1503	0.878523	CACGAAAACTCTGGCACGGA	60.879	55.000	0.00	0.00	44.24	4.69
1444	1504	1.157870	ACACGAAAACTCTGGCACGG	61.158	55.000	0.00	0.00	0.00	4.94
1489	1550	2.259618	CACTACACAGCACCGTACATC	58.740	52.381	0.00	0.00	0.00	3.06
1495	1556	1.668919	CCACTACACTACACAGCACCG	60.669	57.143	0.00	0.00	0.00	4.94
1510	1571	4.106502	AGCCCATCAGATACTACTCCACTA	59.893	45.833	0.00	0.00	0.00	2.74
1514	1575	7.631811	GCTTATTAGCCCATCAGATACTACTCC	60.632	44.444	0.00	0.00	41.74	3.85
1515	1576	7.262048	GCTTATTAGCCCATCAGATACTACTC	58.738	42.308	0.00	0.00	41.74	2.59
1516	1577	7.176589	GCTTATTAGCCCATCAGATACTACT	57.823	40.000	0.00	0.00	41.74	2.57
1530	1591	4.511783	TCGTCGCCGTAGCTTATTAGCC	62.512	54.545	0.00	0.00	40.84	3.93
1531	1592	1.334419	TCGTCGCCGTAGCTTATTAGC	60.334	52.381	0.00	0.00	40.52	3.09
1532	1593	2.675767	TCGTCGCCGTAGCTTATTAG	57.324	50.000	0.00	0.00	36.60	1.73
1533	1594	2.990941	CTTCGTCGCCGTAGCTTATTA	58.009	47.619	0.00	0.00	36.60	0.98
1534	1595	1.836383	CTTCGTCGCCGTAGCTTATT	58.164	50.000	0.00	0.00	36.60	1.40
1535	1596	3.546407	CTTCGTCGCCGTAGCTTAT	57.454	52.632	0.00	0.00	36.60	1.73
1545	1606	2.892425	CCCATCAGGCTTCGTCGC	60.892	66.667	0.00	0.00	0.00	5.19
1564	1625	2.800629	GCTTGGTCGCCGTAGCTTATTA	60.801	50.000	0.00	0.00	36.60	0.98
1702	1763	1.804746	CGCCAACAGACACACACACTA	60.805	52.381	0.00	0.00	0.00	2.74
1703	1764	1.089481	CGCCAACAGACACACACACT	61.089	55.000	0.00	0.00	0.00	3.55
1704	1765	1.087202	TCGCCAACAGACACACACAC	61.087	55.000	0.00	0.00	0.00	3.82
1705	1766	0.179059	ATCGCCAACAGACACACACA	60.179	50.000	0.00	0.00	0.00	3.72
1914	1982	1.009389	CCTCAAGCACGAACTCGACC	61.009	60.000	6.05	0.00	43.02	4.79
1929	1997	4.659172	CGCCCCCTTGTTGCCTCA	62.659	66.667	0.00	0.00	0.00	3.86
1947	2016	2.258726	GGTTTTTCCGGCGCTCACT	61.259	57.895	7.64	0.00	0.00	3.41
1948	2017	2.183858	GAGGTTTTTCCGGCGCTCAC	62.184	60.000	7.64	0.00	41.99	3.51
1968	2037	1.292061	TTCAGAAAACGGTGGACACG	58.708	50.000	0.00	0.00	37.36	4.49
2060	2133	2.654079	CCTCACGGCAGCTCTCCTT	61.654	63.158	0.00	0.00	0.00	3.36
2074	2147	2.144078	TGGAACCGCCAACTCCTCA	61.144	57.895	0.00	0.00	45.87	3.86
2193	2266	0.325296	TAGTTCTCCCCCGTGAGCAT	60.325	55.000	0.00	0.00	32.22	3.79
2258	2331	2.040606	ACCACCGCCTCCCATAGT	59.959	61.111	0.00	0.00	0.00	2.12

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.