Multiple sequence alignment - TraesCS3A01G373600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G373600 chr3A 100.000 3293 0 0 1 3293 623604029 623607321 0.000000e+00 6082.0
1 TraesCS3A01G373600 chr3A 83.381 704 90 21 887 1583 623389445 623390128 7.760000e-176 627.0
2 TraesCS3A01G373600 chr3A 85.714 546 67 8 1680 2219 623390131 623390671 1.720000e-157 566.0
3 TraesCS3A01G373600 chr3A 86.535 505 68 0 1079 1583 623340348 623340852 1.030000e-154 556.0
4 TraesCS3A01G373600 chr3A 88.089 403 48 0 1680 2082 623354997 623355399 2.300000e-131 479.0
5 TraesCS3A01G373600 chr3A 87.841 403 49 0 1680 2082 623230095 623230497 1.070000e-129 473.0
6 TraesCS3A01G373600 chr3B 91.890 2725 186 17 583 3293 641653480 641656183 0.000000e+00 3775.0
7 TraesCS3A01G373600 chr3B 85.180 695 80 18 887 1573 640832064 640832743 0.000000e+00 691.0
8 TraesCS3A01G373600 chr3B 83.498 709 90 16 887 1583 640700507 640701200 1.290000e-178 636.0
9 TraesCS3A01G373600 chr3B 89.082 403 44 0 1680 2082 640701203 640701605 4.910000e-138 501.0
10 TraesCS3A01G373600 chr3B 84.833 389 58 1 1698 2085 640665087 640665475 1.110000e-104 390.0
11 TraesCS3A01G373600 chr3D 93.377 2431 135 12 583 3005 480836520 480838932 0.000000e+00 3574.0
12 TraesCS3A01G373600 chr3D 84.375 704 90 14 887 1583 480357809 480358499 0.000000e+00 673.0
13 TraesCS3A01G373600 chr3D 83.757 708 89 16 887 1583 480375618 480376310 0.000000e+00 647.0
14 TraesCS3A01G373600 chr3D 86.680 503 66 1 1081 1583 480157917 480158418 1.030000e-154 556.0
15 TraesCS3A01G373600 chr3D 88.586 403 46 0 1680 2082 480158421 480158823 1.060000e-134 490.0
16 TraesCS3A01G373600 chr3D 87.768 327 25 9 17 328 427229253 427228927 5.190000e-98 368.0
17 TraesCS3A01G373600 chr4D 87.791 344 22 8 8 333 396622450 396622109 5.150000e-103 385.0
18 TraesCS3A01G373600 chr4D 87.390 341 24 9 8 330 22556973 22556634 1.120000e-99 374.0
19 TraesCS3A01G373600 chr4D 86.567 335 30 9 8 333 6801965 6801637 4.040000e-94 355.0
20 TraesCS3A01G373600 chr4D 79.167 168 20 4 2947 3099 43080410 43080577 5.810000e-18 102.0
21 TraesCS3A01G373600 chr4D 96.296 54 0 2 3185 3236 43138661 43138714 1.630000e-13 87.9
22 TraesCS3A01G373600 chr6D 86.919 344 25 6 5 328 6552328 6552671 5.190000e-98 368.0
23 TraesCS3A01G373600 chr6D 83.000 100 14 3 3182 3279 343634443 343634345 1.630000e-13 87.9
24 TraesCS3A01G373600 chr1D 86.880 343 28 8 8 334 433297640 433297299 5.190000e-98 368.0
25 TraesCS3A01G373600 chr1D 82.456 114 16 4 3182 3292 457935112 457935224 2.700000e-16 97.1
26 TraesCS3A01G373600 chr1D 77.193 114 18 6 426 536 288541504 288541396 3.550000e-05 60.2
27 TraesCS3A01G373600 chr5D 89.347 291 26 2 7 292 482289896 482289606 8.690000e-96 361.0
28 TraesCS3A01G373600 chr7D 86.377 345 28 12 5 330 71621012 71621356 3.120000e-95 359.0
29 TraesCS3A01G373600 chr7D 85.882 170 21 3 2661 2827 401112860 401113029 9.390000e-41 178.0
30 TraesCS3A01G373600 chr6A 86.250 320 38 4 14 327 535136731 535137050 3.150000e-90 342.0
31 TraesCS3A01G373600 chr6A 79.200 375 51 11 2822 3170 549621722 549621349 5.490000e-58 235.0
32 TraesCS3A01G373600 chr6A 85.161 155 20 3 2661 2814 1980075 1979923 4.400000e-34 156.0
33 TraesCS3A01G373600 chr6A 83.186 113 10 8 3178 3287 549620783 549620677 9.730000e-16 95.3
34 TraesCS3A01G373600 chr2D 84.150 347 37 8 2826 3171 119846132 119846461 1.470000e-83 320.0
35 TraesCS3A01G373600 chr2A 82.044 362 47 6 2826 3171 122155887 122156246 3.210000e-75 292.0
36 TraesCS3A01G373600 chr2B 82.471 348 40 12 2826 3171 172228180 172228508 5.380000e-73 285.0
37 TraesCS3A01G373600 chr2B 89.474 57 4 2 3182 3236 595093939 595093995 1.640000e-08 71.3
38 TraesCS3A01G373600 chr7A 81.337 359 55 5 2826 3174 57202113 57201757 6.960000e-72 281.0
39 TraesCS3A01G373600 chr7A 83.240 179 19 10 2658 2827 145494651 145494827 1.580000e-33 154.0
40 TraesCS3A01G373600 chr4B 80.793 328 47 7 2862 3174 148127967 148127641 3.280000e-60 243.0
41 TraesCS3A01G373600 chr4B 80.556 324 47 7 2862 3170 148161033 148160711 5.490000e-58 235.0
42 TraesCS3A01G373600 chr4B 82.576 132 22 1 3043 3173 139947956 139948087 7.470000e-22 115.0
43 TraesCS3A01G373600 chr6B 79.379 354 46 10 2843 3170 604705506 604705858 1.190000e-54 224.0
44 TraesCS3A01G373600 chr1B 85.897 156 18 4 2661 2812 673888670 673888515 2.630000e-36 163.0
45 TraesCS3A01G373600 chr1B 78.070 114 17 6 426 536 389944388 389944280 7.630000e-07 65.8
46 TraesCS3A01G373600 chr7B 85.443 158 19 3 2658 2813 107650306 107650461 9.460000e-36 161.0
47 TraesCS3A01G373600 chr7B 84.431 167 19 5 2661 2822 410630400 410630564 1.220000e-34 158.0
48 TraesCS3A01G373600 chr5A 83.908 174 19 6 2661 2827 566293312 566293141 1.220000e-34 158.0
49 TraesCS3A01G373600 chr5A 92.308 52 3 1 3185 3235 17055029 17054978 4.560000e-09 73.1
50 TraesCS3A01G373600 chr4A 78.926 242 35 4 2949 3174 556802463 556802222 2.050000e-32 150.0
51 TraesCS3A01G373600 chr4A 82.653 98 15 2 3185 3280 556801864 556801767 5.850000e-13 86.1
52 TraesCS3A01G373600 chrUn 89.091 55 5 1 3183 3236 232790977 232791031 2.120000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G373600 chr3A 623604029 623607321 3292 False 6082.0 6082 100.0000 1 3293 1 chr3A.!!$F4 3292
1 TraesCS3A01G373600 chr3A 623389445 623390671 1226 False 596.5 627 84.5475 887 2219 2 chr3A.!!$F5 1332
2 TraesCS3A01G373600 chr3A 623340348 623340852 504 False 556.0 556 86.5350 1079 1583 1 chr3A.!!$F2 504
3 TraesCS3A01G373600 chr3B 641653480 641656183 2703 False 3775.0 3775 91.8900 583 3293 1 chr3B.!!$F3 2710
4 TraesCS3A01G373600 chr3B 640832064 640832743 679 False 691.0 691 85.1800 887 1573 1 chr3B.!!$F2 686
5 TraesCS3A01G373600 chr3B 640700507 640701605 1098 False 568.5 636 86.2900 887 2082 2 chr3B.!!$F4 1195
6 TraesCS3A01G373600 chr3D 480836520 480838932 2412 False 3574.0 3574 93.3770 583 3005 1 chr3D.!!$F3 2422
7 TraesCS3A01G373600 chr3D 480357809 480358499 690 False 673.0 673 84.3750 887 1583 1 chr3D.!!$F1 696
8 TraesCS3A01G373600 chr3D 480375618 480376310 692 False 647.0 647 83.7570 887 1583 1 chr3D.!!$F2 696
9 TraesCS3A01G373600 chr3D 480157917 480158823 906 False 523.0 556 87.6330 1081 2082 2 chr3D.!!$F4 1001

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 842 0.028902 GAAACATATCGGCCGCAACC 59.971 55.0 23.51 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2654 2687 0.032267 GATCGGCTAGGTGCACCTAC 59.968 60.0 36.63 30.07 46.48 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.270205 ACAATGAGCGGGGCAGAG 59.730 61.111 0.00 0.00 0.00 3.35
18 19 2.270205 CAATGAGCGGGGCAGAGT 59.730 61.111 0.00 0.00 0.00 3.24
19 20 2.110967 CAATGAGCGGGGCAGAGTG 61.111 63.158 0.00 0.00 0.00 3.51
20 21 2.596851 AATGAGCGGGGCAGAGTGT 61.597 57.895 0.00 0.00 0.00 3.55
21 22 2.809861 AATGAGCGGGGCAGAGTGTG 62.810 60.000 0.00 0.00 0.00 3.82
22 23 4.767255 GAGCGGGGCAGAGTGTGG 62.767 72.222 0.00 0.00 0.00 4.17
24 25 4.767255 GCGGGGCAGAGTGTGGAG 62.767 72.222 0.00 0.00 0.00 3.86
25 26 4.087892 CGGGGCAGAGTGTGGAGG 62.088 72.222 0.00 0.00 0.00 4.30
26 27 3.721706 GGGGCAGAGTGTGGAGGG 61.722 72.222 0.00 0.00 0.00 4.30
27 28 2.607750 GGGCAGAGTGTGGAGGGA 60.608 66.667 0.00 0.00 0.00 4.20
28 29 2.664081 GGGCAGAGTGTGGAGGGAG 61.664 68.421 0.00 0.00 0.00 4.30
29 30 2.664081 GGCAGAGTGTGGAGGGAGG 61.664 68.421 0.00 0.00 0.00 4.30
30 31 2.985456 CAGAGTGTGGAGGGAGGC 59.015 66.667 0.00 0.00 0.00 4.70
31 32 2.284995 AGAGTGTGGAGGGAGGCC 60.285 66.667 0.00 0.00 0.00 5.19
32 33 2.284995 GAGTGTGGAGGGAGGCCT 60.285 66.667 3.86 3.86 0.00 5.19
33 34 1.920835 GAGTGTGGAGGGAGGCCTT 60.921 63.158 6.77 0.00 0.00 4.35
34 35 1.904990 GAGTGTGGAGGGAGGCCTTC 61.905 65.000 6.77 3.67 0.00 3.46
35 36 1.920835 GTGTGGAGGGAGGCCTTCT 60.921 63.158 11.94 10.28 29.89 2.85
36 37 1.151810 TGTGGAGGGAGGCCTTCTT 60.152 57.895 11.94 1.88 29.89 2.52
37 38 0.118346 TGTGGAGGGAGGCCTTCTTA 59.882 55.000 11.94 1.40 29.89 2.10
38 39 1.274416 TGTGGAGGGAGGCCTTCTTAT 60.274 52.381 11.94 0.00 29.89 1.73
39 40 2.022428 TGTGGAGGGAGGCCTTCTTATA 60.022 50.000 11.94 0.00 29.89 0.98
40 41 3.046374 GTGGAGGGAGGCCTTCTTATAA 58.954 50.000 11.94 0.00 29.89 0.98
41 42 3.046374 TGGAGGGAGGCCTTCTTATAAC 58.954 50.000 11.94 0.00 29.89 1.89
42 43 2.037381 GGAGGGAGGCCTTCTTATAACG 59.963 54.545 11.94 0.00 29.89 3.18
43 44 2.963782 GAGGGAGGCCTTCTTATAACGA 59.036 50.000 11.94 0.00 0.00 3.85
44 45 2.966516 AGGGAGGCCTTCTTATAACGAG 59.033 50.000 11.94 0.00 0.00 4.18
45 46 2.548280 GGGAGGCCTTCTTATAACGAGC 60.548 54.545 11.94 0.00 0.00 5.03
46 47 2.395654 GAGGCCTTCTTATAACGAGCG 58.604 52.381 6.77 0.00 0.00 5.03
47 48 0.859882 GGCCTTCTTATAACGAGCGC 59.140 55.000 0.00 0.00 0.00 5.92
48 49 0.859882 GCCTTCTTATAACGAGCGCC 59.140 55.000 2.29 0.00 0.00 6.53
49 50 1.129326 CCTTCTTATAACGAGCGCCG 58.871 55.000 15.25 15.25 45.44 6.46
50 51 1.129326 CTTCTTATAACGAGCGCCGG 58.871 55.000 19.73 0.00 43.93 6.13
51 52 0.872881 TTCTTATAACGAGCGCCGGC 60.873 55.000 19.07 19.07 43.93 6.13
52 53 2.279650 TTATAACGAGCGCCGGCC 60.280 61.111 23.46 14.23 43.93 6.13
53 54 4.634133 TATAACGAGCGCCGGCCG 62.634 66.667 23.46 21.04 43.93 6.13
71 72 4.575245 CGGCGCGCGAATCTTTCC 62.575 66.667 37.18 21.98 0.00 3.13
72 73 4.237809 GGCGCGCGAATCTTTCCC 62.238 66.667 37.18 18.99 0.00 3.97
73 74 4.575245 GCGCGCGAATCTTTCCCG 62.575 66.667 37.18 0.41 34.29 5.14
77 78 4.575245 GCGAATCTTTCCCGCGCG 62.575 66.667 25.67 25.67 39.54 6.86
78 79 4.575245 CGAATCTTTCCCGCGCGC 62.575 66.667 27.36 23.91 0.00 6.86
79 80 3.195698 GAATCTTTCCCGCGCGCT 61.196 61.111 30.48 6.44 0.00 5.92
80 81 3.440356 GAATCTTTCCCGCGCGCTG 62.440 63.158 30.48 23.42 0.00 5.18
94 95 3.353836 GCTGGAGCGCGAAAACCA 61.354 61.111 12.10 11.95 0.00 3.67
95 96 2.863153 CTGGAGCGCGAAAACCAG 59.137 61.111 12.10 17.65 42.71 4.00
96 97 3.314388 CTGGAGCGCGAAAACCAGC 62.314 63.158 12.10 0.00 42.30 4.85
118 119 4.877619 GCTAGGCCGCTTTCCCCC 62.878 72.222 0.00 0.00 0.00 5.40
119 120 4.547367 CTAGGCCGCTTTCCCCCG 62.547 72.222 0.00 0.00 0.00 5.73
133 134 4.084888 CCCGCGCGTGAACCTTTC 62.085 66.667 29.95 0.00 0.00 2.62
134 135 4.084888 CCGCGCGTGAACCTTTCC 62.085 66.667 29.95 0.00 0.00 3.13
135 136 4.084888 CGCGCGTGAACCTTTCCC 62.085 66.667 24.19 0.00 0.00 3.97
136 137 4.084888 GCGCGTGAACCTTTCCCG 62.085 66.667 8.43 0.00 33.59 5.14
138 139 4.084888 GCGTGAACCTTTCCCGCG 62.085 66.667 0.00 0.00 45.62 6.46
139 140 4.084888 CGTGAACCTTTCCCGCGC 62.085 66.667 0.00 0.00 0.00 6.86
140 141 4.084888 GTGAACCTTTCCCGCGCG 62.085 66.667 25.67 25.67 0.00 6.86
157 158 3.294493 GCTGGAGCGCCAAAACCA 61.294 61.111 11.38 5.74 45.41 3.67
158 159 2.956987 CTGGAGCGCCAAAACCAG 59.043 61.111 11.38 11.97 45.41 4.00
159 160 2.597217 TGGAGCGCCAAAACCAGG 60.597 61.111 6.75 0.00 42.49 4.45
160 161 3.373565 GGAGCGCCAAAACCAGGG 61.374 66.667 2.29 0.00 0.00 4.45
161 162 4.056125 GAGCGCCAAAACCAGGGC 62.056 66.667 2.29 0.00 46.80 5.19
165 166 4.038080 GCCAAAACCAGGGCGACG 62.038 66.667 0.00 0.00 40.93 5.12
166 167 3.361977 CCAAAACCAGGGCGACGG 61.362 66.667 0.00 0.00 0.00 4.79
167 168 4.038080 CAAAACCAGGGCGACGGC 62.038 66.667 13.84 13.84 38.90 5.68
168 169 4.572571 AAAACCAGGGCGACGGCA 62.573 61.111 23.66 0.00 42.47 5.69
169 170 3.860930 AAAACCAGGGCGACGGCAT 62.861 57.895 23.66 14.13 42.47 4.40
182 183 3.896133 GGCATGACCGCTGGCATG 61.896 66.667 18.87 18.87 38.91 4.06
183 184 2.825387 GCATGACCGCTGGCATGA 60.825 61.111 26.33 0.00 38.51 3.07
184 185 2.191513 GCATGACCGCTGGCATGAT 61.192 57.895 26.33 0.00 38.51 2.45
185 186 1.947013 CATGACCGCTGGCATGATC 59.053 57.895 18.43 0.00 38.51 2.92
186 187 0.534427 CATGACCGCTGGCATGATCT 60.534 55.000 18.43 0.00 38.51 2.75
187 188 1.051008 ATGACCGCTGGCATGATCTA 58.949 50.000 0.00 0.00 0.00 1.98
188 189 0.829990 TGACCGCTGGCATGATCTAA 59.170 50.000 0.00 0.00 0.00 2.10
189 190 1.209261 TGACCGCTGGCATGATCTAAA 59.791 47.619 0.00 0.00 0.00 1.85
190 191 2.288666 GACCGCTGGCATGATCTAAAA 58.711 47.619 0.00 0.00 0.00 1.52
191 192 2.017049 ACCGCTGGCATGATCTAAAAC 58.983 47.619 0.00 0.00 0.00 2.43
192 193 1.003545 CCGCTGGCATGATCTAAAACG 60.004 52.381 0.00 0.00 0.00 3.60
193 194 1.595489 CGCTGGCATGATCTAAAACGC 60.595 52.381 0.00 0.00 0.00 4.84
194 195 1.401552 GCTGGCATGATCTAAAACGCA 59.598 47.619 0.00 0.00 0.00 5.24
195 196 2.792542 GCTGGCATGATCTAAAACGCAC 60.793 50.000 0.00 0.00 0.00 5.34
196 197 2.419673 CTGGCATGATCTAAAACGCACA 59.580 45.455 0.00 0.00 0.00 4.57
197 198 2.161410 TGGCATGATCTAAAACGCACAC 59.839 45.455 0.00 0.00 0.00 3.82
199 200 2.787723 GCATGATCTAAAACGCACACGG 60.788 50.000 0.00 0.00 46.04 4.94
200 201 2.157834 TGATCTAAAACGCACACGGT 57.842 45.000 0.00 0.00 45.01 4.83
212 213 6.913873 AACGCACACGGTTATAAAATAGAT 57.086 33.333 0.00 0.00 46.04 1.98
213 214 6.520792 ACGCACACGGTTATAAAATAGATC 57.479 37.500 0.00 0.00 46.04 2.75
214 215 5.174398 ACGCACACGGTTATAAAATAGATCG 59.826 40.000 0.00 0.00 46.04 3.69
215 216 5.388061 CGCACACGGTTATAAAATAGATCGG 60.388 44.000 0.00 0.00 34.97 4.18
216 217 5.614013 GCACACGGTTATAAAATAGATCGGC 60.614 44.000 0.00 0.00 0.00 5.54
217 218 4.992951 ACACGGTTATAAAATAGATCGGCC 59.007 41.667 0.00 0.00 0.00 6.13
218 219 5.221581 ACACGGTTATAAAATAGATCGGCCT 60.222 40.000 0.00 0.00 0.00 5.19
219 220 5.120208 CACGGTTATAAAATAGATCGGCCTG 59.880 44.000 0.00 0.00 0.00 4.85
220 221 5.221581 ACGGTTATAAAATAGATCGGCCTGT 60.222 40.000 0.00 0.00 0.00 4.00
221 222 5.699458 CGGTTATAAAATAGATCGGCCTGTT 59.301 40.000 0.00 0.00 0.00 3.16
222 223 6.869913 CGGTTATAAAATAGATCGGCCTGTTA 59.130 38.462 0.00 0.00 0.00 2.41
223 224 7.063074 CGGTTATAAAATAGATCGGCCTGTTAG 59.937 40.741 0.00 0.00 0.00 2.34
224 225 7.333672 GGTTATAAAATAGATCGGCCTGTTAGG 59.666 40.741 0.00 0.00 38.80 2.69
241 242 2.560861 GCGCACTGCCGATTCAAA 59.439 55.556 0.30 0.00 37.76 2.69
242 243 1.081509 GCGCACTGCCGATTCAAAA 60.082 52.632 0.30 0.00 37.76 2.44
243 244 1.337110 GCGCACTGCCGATTCAAAAC 61.337 55.000 0.30 0.00 37.76 2.43
244 245 0.238289 CGCACTGCCGATTCAAAACT 59.762 50.000 0.00 0.00 0.00 2.66
245 246 1.463056 CGCACTGCCGATTCAAAACTA 59.537 47.619 0.00 0.00 0.00 2.24
246 247 2.095969 CGCACTGCCGATTCAAAACTAA 60.096 45.455 0.00 0.00 0.00 2.24
247 248 3.608241 CGCACTGCCGATTCAAAACTAAA 60.608 43.478 0.00 0.00 0.00 1.85
248 249 4.295051 GCACTGCCGATTCAAAACTAAAA 58.705 39.130 0.00 0.00 0.00 1.52
249 250 4.382754 GCACTGCCGATTCAAAACTAAAAG 59.617 41.667 0.00 0.00 0.00 2.27
250 251 5.757886 CACTGCCGATTCAAAACTAAAAGA 58.242 37.500 0.00 0.00 0.00 2.52
251 252 5.853282 CACTGCCGATTCAAAACTAAAAGAG 59.147 40.000 0.00 0.00 0.00 2.85
252 253 5.048713 ACTGCCGATTCAAAACTAAAAGAGG 60.049 40.000 0.00 0.00 0.00 3.69
253 254 4.217550 TGCCGATTCAAAACTAAAAGAGGG 59.782 41.667 0.00 0.00 0.00 4.30
254 255 4.733850 CCGATTCAAAACTAAAAGAGGGC 58.266 43.478 0.00 0.00 0.00 5.19
255 256 4.403453 CGATTCAAAACTAAAAGAGGGCG 58.597 43.478 0.00 0.00 0.00 6.13
256 257 4.153475 CGATTCAAAACTAAAAGAGGGCGA 59.847 41.667 0.00 0.00 0.00 5.54
257 258 5.334569 CGATTCAAAACTAAAAGAGGGCGAA 60.335 40.000 0.00 0.00 0.00 4.70
258 259 4.823790 TCAAAACTAAAAGAGGGCGAAC 57.176 40.909 0.00 0.00 0.00 3.95
259 260 3.249080 TCAAAACTAAAAGAGGGCGAACG 59.751 43.478 0.00 0.00 0.00 3.95
260 261 1.804601 AACTAAAAGAGGGCGAACGG 58.195 50.000 0.00 0.00 0.00 4.44
261 262 0.672711 ACTAAAAGAGGGCGAACGGC 60.673 55.000 12.10 12.10 42.51 5.68
262 263 1.693083 CTAAAAGAGGGCGAACGGCG 61.693 60.000 4.80 4.80 44.92 6.46
295 296 1.015868 TCCGAACGGACAAAAACACC 58.984 50.000 12.04 0.00 39.76 4.16
300 301 3.136800 CGGACAAAAACACCGTTCG 57.863 52.632 0.00 0.00 41.47 3.95
301 302 0.374410 CGGACAAAAACACCGTTCGT 59.626 50.000 0.00 0.00 41.47 3.85
302 303 1.202054 CGGACAAAAACACCGTTCGTT 60.202 47.619 0.00 0.00 41.47 3.85
303 304 2.728535 CGGACAAAAACACCGTTCGTTT 60.729 45.455 0.00 0.00 41.47 3.60
304 305 2.595095 GGACAAAAACACCGTTCGTTTG 59.405 45.455 0.00 0.00 36.71 2.93
305 306 3.236005 GACAAAAACACCGTTCGTTTGT 58.764 40.909 8.60 8.60 43.23 2.83
306 307 2.981140 ACAAAAACACCGTTCGTTTGTG 59.019 40.909 8.22 9.14 44.00 3.33
307 308 2.981140 CAAAAACACCGTTCGTTTGTGT 59.019 40.909 0.00 0.00 44.63 3.72
308 309 2.530832 AAACACCGTTCGTTTGTGTC 57.469 45.000 6.29 0.00 42.08 3.67
309 310 0.370958 AACACCGTTCGTTTGTGTCG 59.629 50.000 6.29 0.00 42.08 4.35
310 311 1.274476 CACCGTTCGTTTGTGTCGG 59.726 57.895 0.00 0.00 45.53 4.79
311 312 3.708741 CCGTTCGTTTGTGTCGGT 58.291 55.556 0.00 0.00 36.99 4.69
312 313 1.561250 CCGTTCGTTTGTGTCGGTC 59.439 57.895 0.00 0.00 36.99 4.79
313 314 1.561250 CGTTCGTTTGTGTCGGTCC 59.439 57.895 0.00 0.00 0.00 4.46
314 315 1.561250 GTTCGTTTGTGTCGGTCCG 59.439 57.895 4.39 4.39 0.00 4.79
315 316 1.141449 TTCGTTTGTGTCGGTCCGT 59.859 52.632 11.88 0.00 0.00 4.69
316 317 0.459934 TTCGTTTGTGTCGGTCCGTT 60.460 50.000 11.88 0.00 0.00 4.44
317 318 1.146957 TCGTTTGTGTCGGTCCGTTG 61.147 55.000 11.88 0.00 0.00 4.10
318 319 1.644913 GTTTGTGTCGGTCCGTTGG 59.355 57.895 11.88 0.00 0.00 3.77
319 320 0.810823 GTTTGTGTCGGTCCGTTGGA 60.811 55.000 11.88 0.00 0.00 3.53
320 321 0.531090 TTTGTGTCGGTCCGTTGGAG 60.531 55.000 11.88 0.00 29.39 3.86
321 322 1.678598 TTGTGTCGGTCCGTTGGAGT 61.679 55.000 11.88 0.00 29.39 3.85
322 323 1.068585 GTGTCGGTCCGTTGGAGTT 59.931 57.895 11.88 0.00 29.39 3.01
323 324 1.068417 TGTCGGTCCGTTGGAGTTG 59.932 57.895 11.88 0.00 29.39 3.16
324 325 2.029964 TCGGTCCGTTGGAGTTGC 59.970 61.111 11.88 0.00 29.39 4.17
325 326 2.030562 CGGTCCGTTGGAGTTGCT 59.969 61.111 2.08 0.00 29.39 3.91
326 327 2.027625 CGGTCCGTTGGAGTTGCTC 61.028 63.158 2.08 0.00 29.39 4.26
327 328 1.371558 GGTCCGTTGGAGTTGCTCT 59.628 57.895 0.00 0.00 29.39 4.09
328 329 0.250338 GGTCCGTTGGAGTTGCTCTT 60.250 55.000 0.00 0.00 29.39 2.85
329 330 1.001633 GGTCCGTTGGAGTTGCTCTTA 59.998 52.381 0.00 0.00 29.39 2.10
330 331 2.549349 GGTCCGTTGGAGTTGCTCTTAA 60.549 50.000 0.00 0.00 29.39 1.85
331 332 3.335579 GTCCGTTGGAGTTGCTCTTAAT 58.664 45.455 0.00 0.00 29.39 1.40
332 333 4.501071 GTCCGTTGGAGTTGCTCTTAATA 58.499 43.478 0.00 0.00 29.39 0.98
333 334 4.329256 GTCCGTTGGAGTTGCTCTTAATAC 59.671 45.833 0.00 0.00 29.39 1.89
334 335 3.621715 CCGTTGGAGTTGCTCTTAATACC 59.378 47.826 0.00 0.00 0.00 2.73
335 336 4.504858 CGTTGGAGTTGCTCTTAATACCT 58.495 43.478 0.00 0.00 0.00 3.08
336 337 4.330074 CGTTGGAGTTGCTCTTAATACCTG 59.670 45.833 0.00 0.00 0.00 4.00
337 338 5.246307 GTTGGAGTTGCTCTTAATACCTGT 58.754 41.667 0.00 0.00 0.00 4.00
338 339 5.499004 TGGAGTTGCTCTTAATACCTGTT 57.501 39.130 0.00 0.00 0.00 3.16
339 340 5.876357 TGGAGTTGCTCTTAATACCTGTTT 58.124 37.500 0.00 0.00 0.00 2.83
340 341 6.303839 TGGAGTTGCTCTTAATACCTGTTTT 58.696 36.000 0.00 0.00 0.00 2.43
341 342 6.206634 TGGAGTTGCTCTTAATACCTGTTTTG 59.793 38.462 0.00 0.00 0.00 2.44
342 343 6.013842 AGTTGCTCTTAATACCTGTTTTGC 57.986 37.500 0.00 0.00 0.00 3.68
343 344 5.770162 AGTTGCTCTTAATACCTGTTTTGCT 59.230 36.000 0.00 0.00 0.00 3.91
344 345 5.880054 TGCTCTTAATACCTGTTTTGCTC 57.120 39.130 0.00 0.00 0.00 4.26
345 346 5.560724 TGCTCTTAATACCTGTTTTGCTCT 58.439 37.500 0.00 0.00 0.00 4.09
346 347 5.643777 TGCTCTTAATACCTGTTTTGCTCTC 59.356 40.000 0.00 0.00 0.00 3.20
347 348 5.220491 GCTCTTAATACCTGTTTTGCTCTCG 60.220 44.000 0.00 0.00 0.00 4.04
348 349 5.175859 TCTTAATACCTGTTTTGCTCTCGG 58.824 41.667 0.00 0.00 0.00 4.63
349 350 1.739067 ATACCTGTTTTGCTCTCGGC 58.261 50.000 0.00 0.00 42.22 5.54
350 351 0.669318 TACCTGTTTTGCTCTCGGCG 60.669 55.000 0.00 0.00 45.43 6.46
351 352 2.174349 CTGTTTTGCTCTCGGCGC 59.826 61.111 0.00 0.00 45.43 6.53
352 353 3.314388 CTGTTTTGCTCTCGGCGCC 62.314 63.158 19.07 19.07 45.43 6.53
353 354 4.445545 GTTTTGCTCTCGGCGCCG 62.446 66.667 42.13 42.13 45.43 6.46
370 371 3.643978 GCCGCGCTGGTGATCATC 61.644 66.667 17.38 0.00 41.21 2.92
371 372 2.107750 CCGCGCTGGTGATCATCT 59.892 61.111 7.64 0.00 0.00 2.90
372 373 1.522355 CCGCGCTGGTGATCATCTT 60.522 57.895 7.64 0.00 0.00 2.40
373 374 0.249447 CCGCGCTGGTGATCATCTTA 60.249 55.000 7.64 0.00 0.00 2.10
374 375 1.570813 CGCGCTGGTGATCATCTTAA 58.429 50.000 7.64 0.00 0.00 1.85
375 376 2.138320 CGCGCTGGTGATCATCTTAAT 58.862 47.619 7.64 0.00 0.00 1.40
376 377 2.545526 CGCGCTGGTGATCATCTTAATT 59.454 45.455 7.64 0.00 0.00 1.40
377 378 3.363378 CGCGCTGGTGATCATCTTAATTC 60.363 47.826 7.64 0.00 0.00 2.17
378 379 3.363378 GCGCTGGTGATCATCTTAATTCG 60.363 47.826 7.64 3.17 0.00 3.34
379 380 3.363378 CGCTGGTGATCATCTTAATTCGC 60.363 47.826 7.64 0.00 0.00 4.70
380 381 3.812053 GCTGGTGATCATCTTAATTCGCT 59.188 43.478 7.64 0.00 0.00 4.93
381 382 4.084118 GCTGGTGATCATCTTAATTCGCTC 60.084 45.833 7.64 0.00 0.00 5.03
382 383 4.380531 TGGTGATCATCTTAATTCGCTCC 58.619 43.478 7.64 0.00 0.00 4.70
383 384 3.430218 GGTGATCATCTTAATTCGCTCCG 59.570 47.826 0.00 0.00 0.00 4.63
384 385 4.051922 GTGATCATCTTAATTCGCTCCGT 58.948 43.478 0.00 0.00 0.00 4.69
385 386 4.508124 GTGATCATCTTAATTCGCTCCGTT 59.492 41.667 0.00 0.00 0.00 4.44
386 387 4.507756 TGATCATCTTAATTCGCTCCGTTG 59.492 41.667 0.00 0.00 0.00 4.10
387 388 3.857052 TCATCTTAATTCGCTCCGTTGT 58.143 40.909 0.00 0.00 0.00 3.32
388 389 5.001237 TCATCTTAATTCGCTCCGTTGTA 57.999 39.130 0.00 0.00 0.00 2.41
389 390 5.041287 TCATCTTAATTCGCTCCGTTGTAG 58.959 41.667 0.00 0.00 0.00 2.74
390 391 4.445452 TCTTAATTCGCTCCGTTGTAGT 57.555 40.909 0.00 0.00 0.00 2.73
391 392 4.171005 TCTTAATTCGCTCCGTTGTAGTG 58.829 43.478 0.00 0.00 0.00 2.74
392 393 1.722011 AATTCGCTCCGTTGTAGTGG 58.278 50.000 0.00 0.00 0.00 4.00
393 394 0.606604 ATTCGCTCCGTTGTAGTGGT 59.393 50.000 0.00 0.00 0.00 4.16
394 395 0.390124 TTCGCTCCGTTGTAGTGGTT 59.610 50.000 0.00 0.00 0.00 3.67
395 396 0.038892 TCGCTCCGTTGTAGTGGTTC 60.039 55.000 0.00 0.00 0.00 3.62
396 397 1.012486 CGCTCCGTTGTAGTGGTTCC 61.012 60.000 0.00 0.00 0.00 3.62
397 398 0.672711 GCTCCGTTGTAGTGGTTCCC 60.673 60.000 0.00 0.00 0.00 3.97
398 399 0.389426 CTCCGTTGTAGTGGTTCCCG 60.389 60.000 0.00 0.00 0.00 5.14
399 400 1.114722 TCCGTTGTAGTGGTTCCCGT 61.115 55.000 0.00 0.00 0.00 5.28
400 401 0.947180 CCGTTGTAGTGGTTCCCGTG 60.947 60.000 0.00 0.00 0.00 4.94
401 402 0.249573 CGTTGTAGTGGTTCCCGTGT 60.250 55.000 0.00 0.00 0.00 4.49
402 403 1.807377 CGTTGTAGTGGTTCCCGTGTT 60.807 52.381 0.00 0.00 0.00 3.32
403 404 1.869132 GTTGTAGTGGTTCCCGTGTTC 59.131 52.381 0.00 0.00 0.00 3.18
404 405 0.393820 TGTAGTGGTTCCCGTGTTCC 59.606 55.000 0.00 0.00 0.00 3.62
405 406 0.393820 GTAGTGGTTCCCGTGTTCCA 59.606 55.000 0.00 0.00 0.00 3.53
406 407 0.682852 TAGTGGTTCCCGTGTTCCAG 59.317 55.000 0.00 0.00 0.00 3.86
407 408 1.147600 GTGGTTCCCGTGTTCCAGT 59.852 57.895 0.00 0.00 0.00 4.00
408 409 1.147376 TGGTTCCCGTGTTCCAGTG 59.853 57.895 0.00 0.00 0.00 3.66
409 410 2.258726 GGTTCCCGTGTTCCAGTGC 61.259 63.158 0.00 0.00 0.00 4.40
410 411 2.280524 TTCCCGTGTTCCAGTGCG 60.281 61.111 0.00 0.00 0.00 5.34
411 412 4.980805 TCCCGTGTTCCAGTGCGC 62.981 66.667 0.00 0.00 0.00 6.09
413 414 3.049674 CCGTGTTCCAGTGCGCAT 61.050 61.111 15.91 0.00 0.00 4.73
414 415 2.174107 CGTGTTCCAGTGCGCATG 59.826 61.111 15.91 13.03 0.00 4.06
415 416 2.562912 GTGTTCCAGTGCGCATGG 59.437 61.111 24.38 24.38 39.33 3.66
416 417 2.112928 TGTTCCAGTGCGCATGGT 59.887 55.556 27.09 10.55 39.01 3.55
417 418 1.965930 TGTTCCAGTGCGCATGGTC 60.966 57.895 27.09 22.38 39.01 4.02
418 419 2.741985 TTCCAGTGCGCATGGTCG 60.742 61.111 27.09 11.50 39.01 4.79
419 420 3.529341 TTCCAGTGCGCATGGTCGT 62.529 57.895 27.09 4.62 39.01 4.34
420 421 3.490759 CCAGTGCGCATGGTCGTC 61.491 66.667 15.91 0.00 32.85 4.20
421 422 2.433145 CAGTGCGCATGGTCGTCT 60.433 61.111 15.91 0.00 0.00 4.18
422 423 2.433145 AGTGCGCATGGTCGTCTG 60.433 61.111 15.91 0.00 0.00 3.51
423 424 4.152625 GTGCGCATGGTCGTCTGC 62.153 66.667 15.91 0.00 35.02 4.26
424 425 4.377708 TGCGCATGGTCGTCTGCT 62.378 61.111 5.66 0.00 36.23 4.24
425 426 3.121030 GCGCATGGTCGTCTGCTT 61.121 61.111 0.30 0.00 36.23 3.91
426 427 2.680913 GCGCATGGTCGTCTGCTTT 61.681 57.895 0.30 0.00 36.23 3.51
427 428 1.133253 CGCATGGTCGTCTGCTTTG 59.867 57.895 0.00 0.00 36.23 2.77
428 429 1.568612 CGCATGGTCGTCTGCTTTGT 61.569 55.000 0.00 0.00 36.23 2.83
429 430 0.593128 GCATGGTCGTCTGCTTTGTT 59.407 50.000 0.00 0.00 35.49 2.83
430 431 1.001378 GCATGGTCGTCTGCTTTGTTT 60.001 47.619 0.00 0.00 35.49 2.83
431 432 2.225491 GCATGGTCGTCTGCTTTGTTTA 59.775 45.455 0.00 0.00 35.49 2.01
432 433 3.304391 GCATGGTCGTCTGCTTTGTTTAA 60.304 43.478 0.00 0.00 35.49 1.52
433 434 4.791411 GCATGGTCGTCTGCTTTGTTTAAA 60.791 41.667 0.00 0.00 35.49 1.52
434 435 5.460646 CATGGTCGTCTGCTTTGTTTAAAT 58.539 37.500 0.00 0.00 0.00 1.40
435 436 6.607689 CATGGTCGTCTGCTTTGTTTAAATA 58.392 36.000 0.00 0.00 0.00 1.40
436 437 6.811253 TGGTCGTCTGCTTTGTTTAAATAT 57.189 33.333 0.00 0.00 0.00 1.28
437 438 6.607689 TGGTCGTCTGCTTTGTTTAAATATG 58.392 36.000 0.00 0.00 0.00 1.78
438 439 6.205853 TGGTCGTCTGCTTTGTTTAAATATGT 59.794 34.615 0.00 0.00 0.00 2.29
439 440 7.388224 TGGTCGTCTGCTTTGTTTAAATATGTA 59.612 33.333 0.00 0.00 0.00 2.29
440 441 8.395633 GGTCGTCTGCTTTGTTTAAATATGTAT 58.604 33.333 0.00 0.00 0.00 2.29
441 442 9.769093 GTCGTCTGCTTTGTTTAAATATGTATT 57.231 29.630 0.00 0.00 0.00 1.89
512 513 5.720371 TGTGGATAGTTTTGGATGTTTGG 57.280 39.130 0.00 0.00 0.00 3.28
513 514 4.021544 TGTGGATAGTTTTGGATGTTTGGC 60.022 41.667 0.00 0.00 0.00 4.52
514 515 4.220602 GTGGATAGTTTTGGATGTTTGGCT 59.779 41.667 0.00 0.00 0.00 4.75
515 516 4.462483 TGGATAGTTTTGGATGTTTGGCTC 59.538 41.667 0.00 0.00 0.00 4.70
516 517 4.706962 GGATAGTTTTGGATGTTTGGCTCT 59.293 41.667 0.00 0.00 0.00 4.09
517 518 5.163612 GGATAGTTTTGGATGTTTGGCTCTC 60.164 44.000 0.00 0.00 0.00 3.20
518 519 3.837355 AGTTTTGGATGTTTGGCTCTCT 58.163 40.909 0.00 0.00 0.00 3.10
519 520 3.823304 AGTTTTGGATGTTTGGCTCTCTC 59.177 43.478 0.00 0.00 0.00 3.20
520 521 2.099141 TTGGATGTTTGGCTCTCTCG 57.901 50.000 0.00 0.00 0.00 4.04
521 522 0.976641 TGGATGTTTGGCTCTCTCGT 59.023 50.000 0.00 0.00 0.00 4.18
522 523 1.066858 TGGATGTTTGGCTCTCTCGTC 60.067 52.381 0.00 0.00 0.00 4.20
523 524 1.646189 GATGTTTGGCTCTCTCGTCC 58.354 55.000 0.00 0.00 0.00 4.79
524 525 0.108615 ATGTTTGGCTCTCTCGTCCG 60.109 55.000 0.00 0.00 0.00 4.79
525 526 1.289380 GTTTGGCTCTCTCGTCCGT 59.711 57.895 0.00 0.00 0.00 4.69
526 527 0.524862 GTTTGGCTCTCTCGTCCGTA 59.475 55.000 0.00 0.00 0.00 4.02
527 528 1.134560 GTTTGGCTCTCTCGTCCGTAT 59.865 52.381 0.00 0.00 0.00 3.06
528 529 1.022735 TTGGCTCTCTCGTCCGTATC 58.977 55.000 0.00 0.00 0.00 2.24
529 530 0.818445 TGGCTCTCTCGTCCGTATCC 60.818 60.000 0.00 0.00 0.00 2.59
530 531 1.570475 GCTCTCTCGTCCGTATCCG 59.430 63.158 0.00 0.00 0.00 4.18
531 532 1.570475 CTCTCTCGTCCGTATCCGC 59.430 63.158 0.00 0.00 0.00 5.54
532 533 1.153309 TCTCTCGTCCGTATCCGCA 60.153 57.895 0.00 0.00 0.00 5.69
533 534 1.158484 TCTCTCGTCCGTATCCGCAG 61.158 60.000 0.00 0.00 0.00 5.18
534 535 1.153309 TCTCGTCCGTATCCGCAGA 60.153 57.895 0.00 0.00 0.00 4.26
535 536 1.009900 CTCGTCCGTATCCGCAGAC 60.010 63.158 0.00 0.00 0.00 3.51
536 537 1.712018 CTCGTCCGTATCCGCAGACA 61.712 60.000 0.00 0.00 0.00 3.41
537 538 1.099295 TCGTCCGTATCCGCAGACAT 61.099 55.000 0.00 0.00 0.00 3.06
538 539 0.589708 CGTCCGTATCCGCAGACATA 59.410 55.000 0.00 0.00 0.00 2.29
539 540 1.199327 CGTCCGTATCCGCAGACATAT 59.801 52.381 0.00 0.00 0.00 1.78
540 541 2.596452 GTCCGTATCCGCAGACATATG 58.404 52.381 0.00 0.00 0.00 1.78
541 542 1.067846 TCCGTATCCGCAGACATATGC 60.068 52.381 1.58 0.00 42.95 3.14
548 549 2.311294 GCAGACATATGCGGTGTCC 58.689 57.895 1.58 0.00 45.47 4.02
566 567 3.869866 CGATTTAAGGTCGGCGTTG 57.130 52.632 6.85 0.00 35.55 4.10
567 568 0.372334 CGATTTAAGGTCGGCGTTGG 59.628 55.000 6.85 0.00 35.55 3.77
568 569 1.729284 GATTTAAGGTCGGCGTTGGA 58.271 50.000 6.85 0.00 0.00 3.53
569 570 1.664151 GATTTAAGGTCGGCGTTGGAG 59.336 52.381 6.85 0.00 0.00 3.86
570 571 0.680618 TTTAAGGTCGGCGTTGGAGA 59.319 50.000 6.85 0.00 0.00 3.71
571 572 0.899720 TTAAGGTCGGCGTTGGAGAT 59.100 50.000 6.85 0.00 0.00 2.75
572 573 0.174845 TAAGGTCGGCGTTGGAGATG 59.825 55.000 6.85 0.00 0.00 2.90
573 574 2.511600 GGTCGGCGTTGGAGATGG 60.512 66.667 6.85 0.00 0.00 3.51
574 575 3.195698 GTCGGCGTTGGAGATGGC 61.196 66.667 6.85 0.00 36.52 4.40
575 576 4.467084 TCGGCGTTGGAGATGGCC 62.467 66.667 6.85 0.00 42.14 5.36
576 577 4.473520 CGGCGTTGGAGATGGCCT 62.474 66.667 3.32 0.00 43.38 5.19
577 578 2.044946 GGCGTTGGAGATGGCCTT 60.045 61.111 3.32 0.00 42.29 4.35
578 579 1.223487 GGCGTTGGAGATGGCCTTA 59.777 57.895 3.32 0.00 42.29 2.69
579 580 0.393808 GGCGTTGGAGATGGCCTTAA 60.394 55.000 3.32 0.00 42.29 1.85
580 581 1.017387 GCGTTGGAGATGGCCTTAAG 58.983 55.000 3.32 0.00 0.00 1.85
581 582 1.017387 CGTTGGAGATGGCCTTAAGC 58.983 55.000 3.32 0.00 42.60 3.09
582 583 1.678728 CGTTGGAGATGGCCTTAAGCA 60.679 52.381 3.32 0.00 46.50 3.91
583 584 1.745653 GTTGGAGATGGCCTTAAGCAC 59.254 52.381 3.32 0.00 46.50 4.40
584 585 1.289160 TGGAGATGGCCTTAAGCACT 58.711 50.000 3.32 0.00 46.50 4.40
585 586 1.635487 TGGAGATGGCCTTAAGCACTT 59.365 47.619 3.32 0.00 46.50 3.16
586 587 2.293170 GGAGATGGCCTTAAGCACTTC 58.707 52.381 3.32 0.32 46.50 3.01
587 588 1.936547 GAGATGGCCTTAAGCACTTCG 59.063 52.381 3.32 0.00 46.50 3.79
588 589 0.378610 GATGGCCTTAAGCACTTCGC 59.621 55.000 3.32 0.00 46.50 4.70
589 590 1.032114 ATGGCCTTAAGCACTTCGCC 61.032 55.000 3.32 10.30 46.50 5.54
590 591 1.377333 GGCCTTAAGCACTTCGCCT 60.377 57.895 10.03 0.00 46.50 5.52
591 592 1.369839 GGCCTTAAGCACTTCGCCTC 61.370 60.000 10.03 0.00 46.50 4.70
592 593 0.673644 GCCTTAAGCACTTCGCCTCA 60.674 55.000 0.00 0.00 44.04 3.86
637 638 7.168804 GTCCATAAACTAAAGTGCCGTCTATAC 59.831 40.741 0.00 0.00 0.00 1.47
653 654 6.929049 CCGTCTATACAAGGCTTTGAATATGA 59.071 38.462 16.36 4.10 37.73 2.15
665 666 5.565592 TTTGAATATGAATGCGCTCTGTT 57.434 34.783 9.73 0.00 0.00 3.16
669 670 0.813184 ATGAATGCGCTCTGTTTGGG 59.187 50.000 9.73 0.00 0.00 4.12
840 842 0.028902 GAAACATATCGGCCGCAACC 59.971 55.000 23.51 0.00 0.00 3.77
845 847 1.876799 CATATCGGCCGCAACCAAATA 59.123 47.619 23.51 11.80 0.00 1.40
866 868 9.403110 CAAATATTTCTGCATATCAGCTTTACC 57.597 33.333 0.00 0.00 42.56 2.85
1048 1053 2.096248 CTACCTCACCAGTCTCCACTC 58.904 57.143 0.00 0.00 0.00 3.51
1128 1143 1.194781 TCACTCCCTTCCAGCTCACC 61.195 60.000 0.00 0.00 0.00 4.02
1249 1264 1.069022 CGTCCGGAAACTACGAGTTCA 60.069 52.381 5.23 0.00 37.47 3.18
1326 1341 2.925170 AGCCACTGCGACCCTTCT 60.925 61.111 0.00 0.00 44.33 2.85
1595 1610 1.608717 CTCGCCAGGTAAGCTGGAGT 61.609 60.000 0.00 0.00 44.39 3.85
1602 1617 4.024670 CCAGGTAAGCTGGAGTAACTAGT 58.975 47.826 0.00 0.00 44.39 2.57
1637 1660 3.841643 CCGTTCCAACTAGTCGTGTATT 58.158 45.455 0.00 0.00 0.00 1.89
1643 1666 3.850273 CCAACTAGTCGTGTATTGACGTC 59.150 47.826 9.11 9.11 41.24 4.34
1706 1729 0.250081 GGATTTGGGCAAAAACGGCA 60.250 50.000 0.00 0.00 33.56 5.69
1786 1809 0.391130 GTGCGATCAACACAGGGCTA 60.391 55.000 10.25 0.00 37.96 3.93
1810 1833 2.416701 CGACTTTGTTTGGGTGCAGTTT 60.417 45.455 0.00 0.00 0.00 2.66
1873 1896 0.034198 TCATGGACGCGTGGAAGAAA 59.966 50.000 20.70 0.00 0.00 2.52
2044 2067 3.376546 GGTCTAAGTTCTATGACGACCGT 59.623 47.826 0.00 0.00 31.35 4.83
2096 2119 3.670523 CGTGTGATTCTCGTGGCTATATG 59.329 47.826 0.00 0.00 0.00 1.78
2113 2138 0.756294 ATGTGTTCATCCCGGCGATA 59.244 50.000 9.30 0.00 0.00 2.92
2126 2151 1.081906 GCGATATTGCATGTGGGCG 60.082 57.895 10.24 0.00 36.28 6.13
2127 2152 1.785041 GCGATATTGCATGTGGGCGT 61.785 55.000 10.24 0.00 36.28 5.68
2250 2279 2.187958 AGTTGGCACTAGATGGTAGCA 58.812 47.619 0.00 0.00 0.00 3.49
2279 2308 7.749126 GTGTACCAGTATTTCAGCACAATAAAC 59.251 37.037 0.00 0.00 0.00 2.01
2298 2327 3.878086 ACATCACGCAACAGTTTGTAG 57.122 42.857 0.00 0.00 34.90 2.74
2357 2386 4.392940 TGGCTCTTCTTTCTTTCTTCCTG 58.607 43.478 0.00 0.00 0.00 3.86
2378 2407 5.303747 TGTTTGCGAAAAGAGAAAACTCA 57.696 34.783 0.00 0.00 33.07 3.41
2382 2411 5.749596 TGCGAAAAGAGAAAACTCATTGA 57.250 34.783 0.00 0.00 0.00 2.57
2570 2599 7.703621 CAGATGCTTCGAATATTCCACAAAAAT 59.296 33.333 9.87 0.00 0.00 1.82
2586 2615 5.032170 ACAAAAATCAGGCTATCCCCAATT 58.968 37.500 0.00 0.00 0.00 2.32
2592 2621 0.954452 GGCTATCCCCAATTGCGAAG 59.046 55.000 0.00 0.62 37.03 3.79
2624 2653 1.221840 CGCCAACCACCTCTATGCT 59.778 57.895 0.00 0.00 0.00 3.79
2630 2659 1.141881 CCACCTCTATGCTCGCGTT 59.858 57.895 5.77 0.00 0.00 4.84
2654 2687 4.586334 CGGGCAAAATGTTTTTCTGTTTG 58.414 39.130 0.00 0.00 33.35 2.93
2739 2772 5.769662 TCCTACTTGCATGAACTTCAAACAT 59.230 36.000 6.60 0.00 0.00 2.71
2799 2834 7.594714 ACATGCATAACATAACCGTTAACAAA 58.405 30.769 0.00 0.00 36.64 2.83
2837 2872 5.299279 ACGAGTTTCAAATTGATGTCACCTT 59.701 36.000 0.00 0.00 0.00 3.50
2847 2882 5.545063 TTGATGTCACCTTCACAGAGTTA 57.455 39.130 0.00 0.00 0.00 2.24
2858 2893 8.088981 CACCTTCACAGAGTTATTGTAGTAGTT 58.911 37.037 0.00 0.00 0.00 2.24
2870 2905 8.533153 GTTATTGTAGTAGTTCGCAATTCTCTC 58.467 37.037 0.00 0.00 34.05 3.20
2883 2918 4.158394 GCAATTCTCTCCCAAAACATAGCA 59.842 41.667 0.00 0.00 0.00 3.49
2914 2949 1.127766 TCGTTTCAATCGTTGCATCCG 59.872 47.619 0.00 0.00 0.00 4.18
2964 2999 4.458295 AGAGCAACATCCTCAAGTTGATTG 59.542 41.667 5.91 8.72 43.53 2.67
2995 3030 1.080705 CGTGACCTTGACGACCTCC 60.081 63.158 0.00 0.00 39.21 4.30
2996 3031 1.292541 GTGACCTTGACGACCTCCC 59.707 63.158 0.00 0.00 0.00 4.30
3005 3040 1.534235 ACGACCTCCCACTTGCTCT 60.534 57.895 0.00 0.00 0.00 4.09
3023 3058 0.984230 CTGGCCACCTCCTCAACTTA 59.016 55.000 0.00 0.00 0.00 2.24
3030 3065 3.165875 CACCTCCTCAACTTAGTCTCCA 58.834 50.000 0.00 0.00 0.00 3.86
3033 3068 3.067461 CCTCCTCAACTTAGTCTCCATCG 59.933 52.174 0.00 0.00 0.00 3.84
3048 3083 2.427245 ATCGGCCACCTCCTCTTCG 61.427 63.158 2.24 0.00 0.00 3.79
3092 3127 6.603201 TCCCAAATTGAATCATAACTGAGACC 59.397 38.462 0.00 0.00 34.12 3.85
3095 3130 8.133627 CCAAATTGAATCATAACTGAGACCATC 58.866 37.037 0.00 0.00 34.12 3.51
3105 3140 1.271934 CTGAGACCATCTAGCCCATCG 59.728 57.143 0.00 0.00 0.00 3.84
3108 3143 3.093057 GAGACCATCTAGCCCATCGTAT 58.907 50.000 0.00 0.00 0.00 3.06
3134 3169 5.107065 CGAGGACTTCAAAGACGCTAAAAAT 60.107 40.000 0.00 0.00 0.00 1.82
3140 3175 5.025986 TCAAAGACGCTAAAAATTCGGTC 57.974 39.130 0.00 0.00 0.00 4.79
3151 3186 5.432885 AAAAATTCGGTCGTGTTCATCTT 57.567 34.783 0.00 0.00 0.00 2.40
3170 3205 3.000523 TCTTCACGCTACGACAACAAAAC 59.999 43.478 0.00 0.00 0.00 2.43
3171 3206 2.269172 TCACGCTACGACAACAAAACA 58.731 42.857 0.00 0.00 0.00 2.83
3177 3212 4.375698 CGCTACGACAACAAAACAAATGAG 59.624 41.667 0.00 0.00 0.00 2.90
3181 3216 3.486841 CGACAACAAAACAAATGAGCCAG 59.513 43.478 0.00 0.00 0.00 4.85
3183 3218 2.138596 ACAAAACAAATGAGCCAGCG 57.861 45.000 0.00 0.00 0.00 5.18
3247 3283 2.108566 TTTTTCCCACGCGGACGA 59.891 55.556 12.47 0.00 41.83 4.20
3252 3288 3.829044 CCCACGCGGACGATGGTA 61.829 66.667 12.47 0.00 43.93 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.270205 CACTCTGCCCCGCTCATT 59.730 61.111 0.00 0.00 0.00 2.57
4 5 4.007644 CACACTCTGCCCCGCTCA 62.008 66.667 0.00 0.00 0.00 4.26
7 8 4.767255 CTCCACACTCTGCCCCGC 62.767 72.222 0.00 0.00 0.00 6.13
8 9 4.087892 CCTCCACACTCTGCCCCG 62.088 72.222 0.00 0.00 0.00 5.73
9 10 3.721706 CCCTCCACACTCTGCCCC 61.722 72.222 0.00 0.00 0.00 5.80
11 12 2.664081 CCTCCCTCCACACTCTGCC 61.664 68.421 0.00 0.00 0.00 4.85
12 13 2.985456 CCTCCCTCCACACTCTGC 59.015 66.667 0.00 0.00 0.00 4.26
13 14 2.664081 GGCCTCCCTCCACACTCTG 61.664 68.421 0.00 0.00 0.00 3.35
14 15 2.284995 GGCCTCCCTCCACACTCT 60.285 66.667 0.00 0.00 0.00 3.24
15 16 1.904990 GAAGGCCTCCCTCCACACTC 61.905 65.000 5.23 0.00 41.90 3.51
16 17 1.920835 GAAGGCCTCCCTCCACACT 60.921 63.158 5.23 0.00 41.90 3.55
17 18 1.492993 AAGAAGGCCTCCCTCCACAC 61.493 60.000 5.23 0.00 41.90 3.82
18 19 0.118346 TAAGAAGGCCTCCCTCCACA 59.882 55.000 5.23 0.00 41.90 4.17
19 20 1.512735 ATAAGAAGGCCTCCCTCCAC 58.487 55.000 5.23 0.00 41.90 4.02
20 21 3.046374 GTTATAAGAAGGCCTCCCTCCA 58.954 50.000 5.23 0.00 41.90 3.86
21 22 2.037381 CGTTATAAGAAGGCCTCCCTCC 59.963 54.545 5.23 0.00 41.90 4.30
22 23 2.963782 TCGTTATAAGAAGGCCTCCCTC 59.036 50.000 5.23 0.00 41.90 4.30
23 24 2.966516 CTCGTTATAAGAAGGCCTCCCT 59.033 50.000 5.23 3.23 45.77 4.20
24 25 2.548280 GCTCGTTATAAGAAGGCCTCCC 60.548 54.545 5.23 0.23 0.00 4.30
25 26 2.756829 GCTCGTTATAAGAAGGCCTCC 58.243 52.381 5.23 0.00 0.00 4.30
26 27 2.395654 CGCTCGTTATAAGAAGGCCTC 58.604 52.381 5.23 0.00 0.00 4.70
27 28 1.538419 GCGCTCGTTATAAGAAGGCCT 60.538 52.381 0.00 0.00 0.00 5.19
28 29 0.859882 GCGCTCGTTATAAGAAGGCC 59.140 55.000 0.00 0.00 0.00 5.19
29 30 0.859882 GGCGCTCGTTATAAGAAGGC 59.140 55.000 7.64 0.00 0.00 4.35
30 31 1.129326 CGGCGCTCGTTATAAGAAGG 58.871 55.000 7.64 0.00 0.00 3.46
31 32 1.129326 CCGGCGCTCGTTATAAGAAG 58.871 55.000 7.64 0.00 37.11 2.85
32 33 0.872881 GCCGGCGCTCGTTATAAGAA 60.873 55.000 12.58 0.00 37.11 2.52
33 34 1.299620 GCCGGCGCTCGTTATAAGA 60.300 57.895 12.58 0.00 37.11 2.10
34 35 2.308039 GGCCGGCGCTCGTTATAAG 61.308 63.158 22.54 0.00 37.11 1.73
35 36 2.279650 GGCCGGCGCTCGTTATAA 60.280 61.111 22.54 0.00 37.11 0.98
36 37 4.634133 CGGCCGGCGCTCGTTATA 62.634 66.667 22.54 0.00 37.11 0.98
54 55 4.575245 GGAAAGATTCGCGCGCCG 62.575 66.667 27.95 20.60 38.61 6.46
55 56 4.237809 GGGAAAGATTCGCGCGCC 62.238 66.667 27.95 18.52 32.80 6.53
60 61 4.575245 CGCGCGGGAAAGATTCGC 62.575 66.667 24.84 0.00 45.15 4.70
61 62 4.575245 GCGCGCGGGAAAGATTCG 62.575 66.667 33.06 10.10 0.00 3.34
62 63 3.195698 AGCGCGCGGGAAAGATTC 61.196 61.111 33.06 11.27 0.00 2.52
63 64 3.499737 CAGCGCGCGGGAAAGATT 61.500 61.111 33.06 0.57 0.00 2.40
77 78 3.314388 CTGGTTTTCGCGCTCCAGC 62.314 63.158 19.28 7.45 40.43 4.85
78 79 2.863153 CTGGTTTTCGCGCTCCAG 59.137 61.111 18.32 18.32 40.83 3.86
79 80 3.353836 GCTGGTTTTCGCGCTCCA 61.354 61.111 5.56 6.23 0.00 3.86
80 81 4.445545 CGCTGGTTTTCGCGCTCC 62.446 66.667 5.56 1.17 43.01 4.70
101 102 4.877619 GGGGGAAAGCGGCCTAGC 62.878 72.222 0.00 0.00 37.41 3.42
102 103 4.547367 CGGGGGAAAGCGGCCTAG 62.547 72.222 0.00 0.00 0.00 3.02
116 117 4.084888 GAAAGGTTCACGCGCGGG 62.085 66.667 35.22 32.60 0.00 6.13
117 118 4.084888 GGAAAGGTTCACGCGCGG 62.085 66.667 35.22 22.52 0.00 6.46
118 119 4.084888 GGGAAAGGTTCACGCGCG 62.085 66.667 30.96 30.96 0.00 6.86
123 124 4.084888 CGCGCGGGAAAGGTTCAC 62.085 66.667 24.84 0.00 0.00 3.18
140 141 3.273080 CTGGTTTTGGCGCTCCAGC 62.273 63.158 7.64 0.00 44.53 4.85
141 142 2.629656 CCTGGTTTTGGCGCTCCAG 61.630 63.158 20.13 20.13 44.53 3.86
142 143 2.597217 CCTGGTTTTGGCGCTCCA 60.597 61.111 7.64 7.90 41.55 3.86
143 144 3.373565 CCCTGGTTTTGGCGCTCC 61.374 66.667 7.64 3.30 0.00 4.70
144 145 4.056125 GCCCTGGTTTTGGCGCTC 62.056 66.667 7.64 0.00 38.00 5.03
148 149 4.038080 CGTCGCCCTGGTTTTGGC 62.038 66.667 0.00 0.00 44.41 4.52
149 150 3.361977 CCGTCGCCCTGGTTTTGG 61.362 66.667 0.00 0.00 0.00 3.28
150 151 4.038080 GCCGTCGCCCTGGTTTTG 62.038 66.667 0.00 0.00 0.00 2.44
151 152 3.860930 ATGCCGTCGCCCTGGTTTT 62.861 57.895 0.00 0.00 0.00 2.43
152 153 4.344865 ATGCCGTCGCCCTGGTTT 62.345 61.111 0.00 0.00 0.00 3.27
165 166 3.896133 CATGCCAGCGGTCATGCC 61.896 66.667 3.70 0.00 33.32 4.40
166 167 2.126417 GATCATGCCAGCGGTCATGC 62.126 60.000 10.51 2.89 37.24 4.06
167 168 0.534427 AGATCATGCCAGCGGTCATG 60.534 55.000 9.38 9.38 38.01 3.07
168 169 1.051008 TAGATCATGCCAGCGGTCAT 58.949 50.000 0.00 0.00 0.00 3.06
169 170 0.829990 TTAGATCATGCCAGCGGTCA 59.170 50.000 0.00 0.00 0.00 4.02
170 171 1.953559 TTTAGATCATGCCAGCGGTC 58.046 50.000 0.00 0.00 0.00 4.79
171 172 2.017049 GTTTTAGATCATGCCAGCGGT 58.983 47.619 0.00 0.00 0.00 5.68
172 173 1.003545 CGTTTTAGATCATGCCAGCGG 60.004 52.381 0.00 0.00 0.00 5.52
173 174 1.595489 GCGTTTTAGATCATGCCAGCG 60.595 52.381 0.00 0.00 0.00 5.18
174 175 1.401552 TGCGTTTTAGATCATGCCAGC 59.598 47.619 0.00 0.00 0.00 4.85
175 176 2.419673 TGTGCGTTTTAGATCATGCCAG 59.580 45.455 0.00 0.00 0.00 4.85
176 177 2.161410 GTGTGCGTTTTAGATCATGCCA 59.839 45.455 0.00 0.00 0.00 4.92
177 178 2.785679 GTGTGCGTTTTAGATCATGCC 58.214 47.619 0.00 0.00 0.00 4.40
178 179 2.430956 CGTGTGCGTTTTAGATCATGC 58.569 47.619 0.00 0.00 0.00 4.06
179 180 2.415168 ACCGTGTGCGTTTTAGATCATG 59.585 45.455 0.00 0.00 36.15 3.07
180 181 2.695359 ACCGTGTGCGTTTTAGATCAT 58.305 42.857 0.00 0.00 36.15 2.45
181 182 2.157834 ACCGTGTGCGTTTTAGATCA 57.842 45.000 0.00 0.00 36.15 2.92
182 183 4.852609 ATAACCGTGTGCGTTTTAGATC 57.147 40.909 0.00 0.00 36.15 2.75
183 184 6.724694 TTTATAACCGTGTGCGTTTTAGAT 57.275 33.333 0.00 0.00 36.15 1.98
184 185 6.536731 TTTTATAACCGTGTGCGTTTTAGA 57.463 33.333 0.00 0.00 36.15 2.10
185 186 8.382130 TCTATTTTATAACCGTGTGCGTTTTAG 58.618 33.333 0.00 0.00 36.15 1.85
186 187 8.249327 TCTATTTTATAACCGTGTGCGTTTTA 57.751 30.769 0.00 0.00 36.15 1.52
187 188 7.131498 TCTATTTTATAACCGTGTGCGTTTT 57.869 32.000 0.00 0.00 36.15 2.43
188 189 6.724694 TCTATTTTATAACCGTGTGCGTTT 57.275 33.333 0.00 0.00 36.15 3.60
189 190 6.291955 CGATCTATTTTATAACCGTGTGCGTT 60.292 38.462 0.00 0.00 36.15 4.84
190 191 5.174398 CGATCTATTTTATAACCGTGTGCGT 59.826 40.000 0.00 0.00 36.15 5.24
191 192 5.388061 CCGATCTATTTTATAACCGTGTGCG 60.388 44.000 0.00 0.00 37.95 5.34
192 193 5.614013 GCCGATCTATTTTATAACCGTGTGC 60.614 44.000 0.00 0.00 0.00 4.57
193 194 5.107220 GGCCGATCTATTTTATAACCGTGTG 60.107 44.000 0.00 0.00 0.00 3.82
194 195 4.992951 GGCCGATCTATTTTATAACCGTGT 59.007 41.667 0.00 0.00 0.00 4.49
195 196 5.120208 CAGGCCGATCTATTTTATAACCGTG 59.880 44.000 0.00 0.00 0.00 4.94
196 197 5.221581 ACAGGCCGATCTATTTTATAACCGT 60.222 40.000 0.00 0.00 0.00 4.83
197 198 5.235516 ACAGGCCGATCTATTTTATAACCG 58.764 41.667 0.00 0.00 0.00 4.44
198 199 7.333672 CCTAACAGGCCGATCTATTTTATAACC 59.666 40.741 0.00 0.00 0.00 2.85
199 200 8.252964 CCTAACAGGCCGATCTATTTTATAAC 57.747 38.462 0.00 0.00 0.00 1.89
224 225 1.081509 TTTTGAATCGGCAGTGCGC 60.082 52.632 9.45 0.00 41.28 6.09
225 226 0.238289 AGTTTTGAATCGGCAGTGCG 59.762 50.000 9.45 4.79 0.00 5.34
226 227 3.552604 TTAGTTTTGAATCGGCAGTGC 57.447 42.857 6.55 6.55 0.00 4.40
227 228 5.757886 TCTTTTAGTTTTGAATCGGCAGTG 58.242 37.500 0.00 0.00 0.00 3.66
228 229 5.048713 CCTCTTTTAGTTTTGAATCGGCAGT 60.049 40.000 0.00 0.00 0.00 4.40
229 230 5.393962 CCTCTTTTAGTTTTGAATCGGCAG 58.606 41.667 0.00 0.00 0.00 4.85
230 231 4.217550 CCCTCTTTTAGTTTTGAATCGGCA 59.782 41.667 0.00 0.00 0.00 5.69
231 232 4.733850 CCCTCTTTTAGTTTTGAATCGGC 58.266 43.478 0.00 0.00 0.00 5.54
232 233 4.671766 CGCCCTCTTTTAGTTTTGAATCGG 60.672 45.833 0.00 0.00 0.00 4.18
233 234 4.153475 TCGCCCTCTTTTAGTTTTGAATCG 59.847 41.667 0.00 0.00 0.00 3.34
234 235 5.622770 TCGCCCTCTTTTAGTTTTGAATC 57.377 39.130 0.00 0.00 0.00 2.52
235 236 5.562113 CGTTCGCCCTCTTTTAGTTTTGAAT 60.562 40.000 0.00 0.00 0.00 2.57
236 237 4.260866 CGTTCGCCCTCTTTTAGTTTTGAA 60.261 41.667 0.00 0.00 0.00 2.69
237 238 3.249080 CGTTCGCCCTCTTTTAGTTTTGA 59.751 43.478 0.00 0.00 0.00 2.69
238 239 3.551551 CGTTCGCCCTCTTTTAGTTTTG 58.448 45.455 0.00 0.00 0.00 2.44
239 240 2.551032 CCGTTCGCCCTCTTTTAGTTTT 59.449 45.455 0.00 0.00 0.00 2.43
240 241 2.148768 CCGTTCGCCCTCTTTTAGTTT 58.851 47.619 0.00 0.00 0.00 2.66
241 242 1.804601 CCGTTCGCCCTCTTTTAGTT 58.195 50.000 0.00 0.00 0.00 2.24
242 243 0.672711 GCCGTTCGCCCTCTTTTAGT 60.673 55.000 0.00 0.00 0.00 2.24
243 244 1.693083 CGCCGTTCGCCCTCTTTTAG 61.693 60.000 0.00 0.00 0.00 1.85
244 245 1.738830 CGCCGTTCGCCCTCTTTTA 60.739 57.895 0.00 0.00 0.00 1.52
245 246 3.047877 CGCCGTTCGCCCTCTTTT 61.048 61.111 0.00 0.00 0.00 2.27
270 271 3.652539 TTGTCCGTTCGGATCGGCC 62.653 63.158 20.00 11.52 46.49 6.13
271 272 1.293267 TTTTGTCCGTTCGGATCGGC 61.293 55.000 20.00 15.59 46.49 5.54
273 274 1.527736 TGTTTTTGTCCGTTCGGATCG 59.472 47.619 16.87 1.56 36.61 3.69
274 275 2.350102 GGTGTTTTTGTCCGTTCGGATC 60.350 50.000 16.87 11.02 36.61 3.36
275 276 1.605232 GGTGTTTTTGTCCGTTCGGAT 59.395 47.619 16.87 0.00 36.61 4.18
276 277 1.015868 GGTGTTTTTGTCCGTTCGGA 58.984 50.000 10.00 10.00 0.00 4.55
277 278 0.316360 CGGTGTTTTTGTCCGTTCGG 60.316 55.000 4.74 4.74 39.51 4.30
278 279 3.136800 CGGTGTTTTTGTCCGTTCG 57.863 52.632 0.00 0.00 39.51 3.95
283 284 2.547913 AACGAACGGTGTTTTTGTCC 57.452 45.000 0.00 0.00 0.00 4.02
284 285 3.058390 CACAAACGAACGGTGTTTTTGTC 59.942 43.478 8.67 0.00 38.11 3.18
285 286 2.981140 CACAAACGAACGGTGTTTTTGT 59.019 40.909 6.64 6.64 40.22 2.83
286 287 2.981140 ACACAAACGAACGGTGTTTTTG 59.019 40.909 10.88 10.88 42.72 2.44
287 288 3.236005 GACACAAACGAACGGTGTTTTT 58.764 40.909 8.50 0.00 45.09 1.94
288 289 2.725452 CGACACAAACGAACGGTGTTTT 60.725 45.455 8.50 0.00 45.09 2.43
289 290 1.201943 CGACACAAACGAACGGTGTTT 60.202 47.619 8.50 0.00 45.09 2.83
290 291 0.370958 CGACACAAACGAACGGTGTT 59.629 50.000 8.50 0.00 45.09 3.32
292 293 1.274476 CCGACACAAACGAACGGTG 59.726 57.895 0.00 0.00 38.97 4.94
293 294 3.708741 CCGACACAAACGAACGGT 58.291 55.556 0.00 0.00 38.97 4.83
295 296 1.561250 GGACCGACACAAACGAACG 59.439 57.895 0.00 0.00 0.00 3.95
296 297 1.147557 ACGGACCGACACAAACGAAC 61.148 55.000 23.38 0.00 0.00 3.95
297 298 0.459934 AACGGACCGACACAAACGAA 60.460 50.000 23.38 0.00 0.00 3.85
298 299 1.141449 AACGGACCGACACAAACGA 59.859 52.632 23.38 0.00 0.00 3.85
299 300 1.274476 CAACGGACCGACACAAACG 59.726 57.895 23.38 0.00 0.00 3.60
300 301 0.810823 TCCAACGGACCGACACAAAC 60.811 55.000 23.38 0.00 0.00 2.93
301 302 0.531090 CTCCAACGGACCGACACAAA 60.531 55.000 23.38 0.00 0.00 2.83
302 303 1.068417 CTCCAACGGACCGACACAA 59.932 57.895 23.38 0.65 0.00 3.33
303 304 1.678598 AACTCCAACGGACCGACACA 61.679 55.000 23.38 0.27 0.00 3.72
304 305 1.068585 AACTCCAACGGACCGACAC 59.931 57.895 23.38 0.00 0.00 3.67
305 306 1.068417 CAACTCCAACGGACCGACA 59.932 57.895 23.38 0.00 0.00 4.35
306 307 2.315386 GCAACTCCAACGGACCGAC 61.315 63.158 23.38 0.00 0.00 4.79
307 308 2.029964 GCAACTCCAACGGACCGA 59.970 61.111 23.38 0.00 0.00 4.69
308 309 2.027625 GAGCAACTCCAACGGACCG 61.028 63.158 13.61 13.61 0.00 4.79
309 310 0.250338 AAGAGCAACTCCAACGGACC 60.250 55.000 0.00 0.00 0.00 4.46
310 311 2.450609 TAAGAGCAACTCCAACGGAC 57.549 50.000 0.00 0.00 0.00 4.79
311 312 3.695830 ATTAAGAGCAACTCCAACGGA 57.304 42.857 0.00 0.00 0.00 4.69
312 313 3.621715 GGTATTAAGAGCAACTCCAACGG 59.378 47.826 0.00 0.00 0.00 4.44
313 314 4.330074 CAGGTATTAAGAGCAACTCCAACG 59.670 45.833 1.71 0.00 0.00 4.10
314 315 5.246307 ACAGGTATTAAGAGCAACTCCAAC 58.754 41.667 1.71 0.00 0.00 3.77
315 316 5.499004 ACAGGTATTAAGAGCAACTCCAA 57.501 39.130 1.71 0.00 0.00 3.53
316 317 5.499004 AACAGGTATTAAGAGCAACTCCA 57.501 39.130 1.71 0.00 0.00 3.86
317 318 6.612306 CAAAACAGGTATTAAGAGCAACTCC 58.388 40.000 1.71 0.00 0.00 3.85
318 319 6.072452 AGCAAAACAGGTATTAAGAGCAACTC 60.072 38.462 1.71 0.00 0.00 3.01
319 320 5.770162 AGCAAAACAGGTATTAAGAGCAACT 59.230 36.000 1.71 0.00 0.00 3.16
320 321 6.013842 AGCAAAACAGGTATTAAGAGCAAC 57.986 37.500 1.71 0.00 0.00 4.17
321 322 6.003950 AGAGCAAAACAGGTATTAAGAGCAA 58.996 36.000 1.71 0.00 0.00 3.91
322 323 5.560724 AGAGCAAAACAGGTATTAAGAGCA 58.439 37.500 1.71 0.00 0.00 4.26
323 324 5.220491 CGAGAGCAAAACAGGTATTAAGAGC 60.220 44.000 0.00 0.00 0.00 4.09
324 325 5.292101 CCGAGAGCAAAACAGGTATTAAGAG 59.708 44.000 0.00 0.00 0.00 2.85
325 326 5.175859 CCGAGAGCAAAACAGGTATTAAGA 58.824 41.667 0.00 0.00 0.00 2.10
326 327 4.201822 GCCGAGAGCAAAACAGGTATTAAG 60.202 45.833 0.00 0.00 42.97 1.85
327 328 3.687698 GCCGAGAGCAAAACAGGTATTAA 59.312 43.478 0.00 0.00 42.97 1.40
328 329 3.267483 GCCGAGAGCAAAACAGGTATTA 58.733 45.455 0.00 0.00 42.97 0.98
329 330 2.084546 GCCGAGAGCAAAACAGGTATT 58.915 47.619 0.00 0.00 42.97 1.89
330 331 1.739067 GCCGAGAGCAAAACAGGTAT 58.261 50.000 0.00 0.00 42.97 2.73
331 332 0.669318 CGCCGAGAGCAAAACAGGTA 60.669 55.000 0.00 0.00 44.04 3.08
332 333 1.961277 CGCCGAGAGCAAAACAGGT 60.961 57.895 0.00 0.00 44.04 4.00
333 334 2.863153 CGCCGAGAGCAAAACAGG 59.137 61.111 0.00 0.00 44.04 4.00
334 335 2.174349 GCGCCGAGAGCAAAACAG 59.826 61.111 0.00 0.00 44.04 3.16
335 336 3.353836 GGCGCCGAGAGCAAAACA 61.354 61.111 12.58 0.00 44.04 2.83
336 337 4.445545 CGGCGCCGAGAGCAAAAC 62.446 66.667 44.86 1.62 44.04 2.43
353 354 3.643978 GATGATCACCAGCGCGGC 61.644 66.667 16.48 0.00 39.03 6.53
354 355 0.249447 TAAGATGATCACCAGCGCGG 60.249 55.000 8.83 15.25 42.50 6.46
355 356 1.570813 TTAAGATGATCACCAGCGCG 58.429 50.000 0.00 0.00 36.05 6.86
356 357 3.363378 CGAATTAAGATGATCACCAGCGC 60.363 47.826 0.00 0.00 36.05 5.92
357 358 3.363378 GCGAATTAAGATGATCACCAGCG 60.363 47.826 0.00 0.00 36.05 5.18
358 359 3.812053 AGCGAATTAAGATGATCACCAGC 59.188 43.478 0.00 0.00 0.00 4.85
359 360 4.450419 GGAGCGAATTAAGATGATCACCAG 59.550 45.833 0.00 0.00 0.00 4.00
360 361 4.380531 GGAGCGAATTAAGATGATCACCA 58.619 43.478 0.00 0.00 0.00 4.17
361 362 3.430218 CGGAGCGAATTAAGATGATCACC 59.570 47.826 0.00 0.00 0.00 4.02
362 363 4.051922 ACGGAGCGAATTAAGATGATCAC 58.948 43.478 0.00 0.00 0.00 3.06
363 364 4.322080 ACGGAGCGAATTAAGATGATCA 57.678 40.909 0.00 0.00 0.00 2.92
364 365 4.508124 ACAACGGAGCGAATTAAGATGATC 59.492 41.667 0.00 0.00 0.00 2.92
365 366 4.442706 ACAACGGAGCGAATTAAGATGAT 58.557 39.130 0.00 0.00 0.00 2.45
366 367 3.857052 ACAACGGAGCGAATTAAGATGA 58.143 40.909 0.00 0.00 0.00 2.92
367 368 4.804139 ACTACAACGGAGCGAATTAAGATG 59.196 41.667 0.00 0.00 0.00 2.90
368 369 4.804139 CACTACAACGGAGCGAATTAAGAT 59.196 41.667 0.00 0.00 0.00 2.40
369 370 4.171005 CACTACAACGGAGCGAATTAAGA 58.829 43.478 0.00 0.00 0.00 2.10
370 371 3.306166 CCACTACAACGGAGCGAATTAAG 59.694 47.826 0.00 0.00 0.00 1.85
371 372 3.255725 CCACTACAACGGAGCGAATTAA 58.744 45.455 0.00 0.00 0.00 1.40
372 373 2.231964 ACCACTACAACGGAGCGAATTA 59.768 45.455 0.00 0.00 0.00 1.40
373 374 1.001633 ACCACTACAACGGAGCGAATT 59.998 47.619 0.00 0.00 0.00 2.17
374 375 0.606604 ACCACTACAACGGAGCGAAT 59.393 50.000 0.00 0.00 0.00 3.34
375 376 0.390124 AACCACTACAACGGAGCGAA 59.610 50.000 0.00 0.00 0.00 4.70
376 377 0.038892 GAACCACTACAACGGAGCGA 60.039 55.000 0.00 0.00 0.00 4.93
377 378 1.012486 GGAACCACTACAACGGAGCG 61.012 60.000 0.00 0.00 0.00 5.03
378 379 2.836944 GGAACCACTACAACGGAGC 58.163 57.895 0.00 0.00 0.00 4.70
392 393 2.604174 CGCACTGGAACACGGGAAC 61.604 63.158 0.00 0.00 0.00 3.62
393 394 2.280524 CGCACTGGAACACGGGAA 60.281 61.111 0.00 0.00 0.00 3.97
394 395 4.980805 GCGCACTGGAACACGGGA 62.981 66.667 0.30 0.00 0.00 5.14
396 397 3.049674 ATGCGCACTGGAACACGG 61.050 61.111 14.90 0.00 0.00 4.94
397 398 2.174107 CATGCGCACTGGAACACG 59.826 61.111 14.90 0.00 0.00 4.49
398 399 2.187599 GACCATGCGCACTGGAACAC 62.188 60.000 32.04 20.31 37.22 3.32
399 400 1.965930 GACCATGCGCACTGGAACA 60.966 57.895 32.04 4.20 37.22 3.18
400 401 2.870372 GACCATGCGCACTGGAAC 59.130 61.111 32.04 23.62 37.22 3.62
401 402 2.741985 CGACCATGCGCACTGGAA 60.742 61.111 32.04 5.64 37.22 3.53
402 403 3.932580 GACGACCATGCGCACTGGA 62.933 63.158 32.04 6.36 37.22 3.86
403 404 3.490759 GACGACCATGCGCACTGG 61.491 66.667 26.94 26.94 39.80 4.00
404 405 2.433145 AGACGACCATGCGCACTG 60.433 61.111 14.90 12.61 33.86 3.66
405 406 2.433145 CAGACGACCATGCGCACT 60.433 61.111 14.90 0.00 33.86 4.40
406 407 4.152625 GCAGACGACCATGCGCAC 62.153 66.667 14.90 0.00 31.87 5.34
410 411 0.593128 AACAAAGCAGACGACCATGC 59.407 50.000 0.00 0.00 42.87 4.06
411 412 4.481930 TTAAACAAAGCAGACGACCATG 57.518 40.909 0.00 0.00 0.00 3.66
412 413 5.705609 ATTTAAACAAAGCAGACGACCAT 57.294 34.783 0.00 0.00 0.00 3.55
413 414 6.205853 ACATATTTAAACAAAGCAGACGACCA 59.794 34.615 0.00 0.00 0.00 4.02
414 415 6.608610 ACATATTTAAACAAAGCAGACGACC 58.391 36.000 0.00 0.00 0.00 4.79
415 416 9.769093 AATACATATTTAAACAAAGCAGACGAC 57.231 29.630 0.00 0.00 0.00 4.34
486 487 9.130661 CCAAACATCCAAAACTATCCACATATA 57.869 33.333 0.00 0.00 0.00 0.86
487 488 7.417797 GCCAAACATCCAAAACTATCCACATAT 60.418 37.037 0.00 0.00 0.00 1.78
488 489 6.127479 GCCAAACATCCAAAACTATCCACATA 60.127 38.462 0.00 0.00 0.00 2.29
489 490 5.337491 GCCAAACATCCAAAACTATCCACAT 60.337 40.000 0.00 0.00 0.00 3.21
490 491 4.021544 GCCAAACATCCAAAACTATCCACA 60.022 41.667 0.00 0.00 0.00 4.17
491 492 4.220602 AGCCAAACATCCAAAACTATCCAC 59.779 41.667 0.00 0.00 0.00 4.02
492 493 4.415596 AGCCAAACATCCAAAACTATCCA 58.584 39.130 0.00 0.00 0.00 3.41
493 494 4.706962 AGAGCCAAACATCCAAAACTATCC 59.293 41.667 0.00 0.00 0.00 2.59
494 495 5.649831 AGAGAGCCAAACATCCAAAACTATC 59.350 40.000 0.00 0.00 0.00 2.08
495 496 5.574188 AGAGAGCCAAACATCCAAAACTAT 58.426 37.500 0.00 0.00 0.00 2.12
496 497 4.985538 AGAGAGCCAAACATCCAAAACTA 58.014 39.130 0.00 0.00 0.00 2.24
497 498 3.823304 GAGAGAGCCAAACATCCAAAACT 59.177 43.478 0.00 0.00 0.00 2.66
498 499 3.365364 CGAGAGAGCCAAACATCCAAAAC 60.365 47.826 0.00 0.00 0.00 2.43
499 500 2.813754 CGAGAGAGCCAAACATCCAAAA 59.186 45.455 0.00 0.00 0.00 2.44
500 501 2.224523 ACGAGAGAGCCAAACATCCAAA 60.225 45.455 0.00 0.00 0.00 3.28
501 502 1.347707 ACGAGAGAGCCAAACATCCAA 59.652 47.619 0.00 0.00 0.00 3.53
502 503 0.976641 ACGAGAGAGCCAAACATCCA 59.023 50.000 0.00 0.00 0.00 3.41
503 504 1.646189 GACGAGAGAGCCAAACATCC 58.354 55.000 0.00 0.00 0.00 3.51
504 505 1.646189 GGACGAGAGAGCCAAACATC 58.354 55.000 0.00 0.00 0.00 3.06
505 506 0.108615 CGGACGAGAGAGCCAAACAT 60.109 55.000 0.00 0.00 0.00 2.71
506 507 1.289066 CGGACGAGAGAGCCAAACA 59.711 57.895 0.00 0.00 0.00 2.83
507 508 0.524862 TACGGACGAGAGAGCCAAAC 59.475 55.000 0.00 0.00 0.00 2.93
508 509 1.404391 GATACGGACGAGAGAGCCAAA 59.596 52.381 0.00 0.00 0.00 3.28
509 510 1.022735 GATACGGACGAGAGAGCCAA 58.977 55.000 0.00 0.00 0.00 4.52
510 511 0.818445 GGATACGGACGAGAGAGCCA 60.818 60.000 0.00 0.00 0.00 4.75
511 512 1.950758 GGATACGGACGAGAGAGCC 59.049 63.158 0.00 0.00 0.00 4.70
530 531 1.490693 CGGACACCGCATATGTCTGC 61.491 60.000 4.29 0.00 44.30 4.26
531 532 2.593376 CGGACACCGCATATGTCTG 58.407 57.895 4.29 8.63 44.88 3.51
548 549 0.372334 CCAACGCCGACCTTAAATCG 59.628 55.000 0.00 2.50 39.33 3.34
549 550 1.664151 CTCCAACGCCGACCTTAAATC 59.336 52.381 0.00 0.00 0.00 2.17
550 551 1.276989 TCTCCAACGCCGACCTTAAAT 59.723 47.619 0.00 0.00 0.00 1.40
551 552 0.680618 TCTCCAACGCCGACCTTAAA 59.319 50.000 0.00 0.00 0.00 1.52
552 553 0.899720 ATCTCCAACGCCGACCTTAA 59.100 50.000 0.00 0.00 0.00 1.85
553 554 0.174845 CATCTCCAACGCCGACCTTA 59.825 55.000 0.00 0.00 0.00 2.69
554 555 1.079127 CATCTCCAACGCCGACCTT 60.079 57.895 0.00 0.00 0.00 3.50
555 556 2.579201 CATCTCCAACGCCGACCT 59.421 61.111 0.00 0.00 0.00 3.85
556 557 2.511600 CCATCTCCAACGCCGACC 60.512 66.667 0.00 0.00 0.00 4.79
557 558 3.195698 GCCATCTCCAACGCCGAC 61.196 66.667 0.00 0.00 0.00 4.79
558 559 4.467084 GGCCATCTCCAACGCCGA 62.467 66.667 0.00 0.00 0.00 5.54
559 560 2.587322 TAAGGCCATCTCCAACGCCG 62.587 60.000 5.01 0.00 46.36 6.46
560 561 0.393808 TTAAGGCCATCTCCAACGCC 60.394 55.000 5.01 0.00 41.96 5.68
561 562 1.017387 CTTAAGGCCATCTCCAACGC 58.983 55.000 5.01 0.00 0.00 4.84
562 563 1.017387 GCTTAAGGCCATCTCCAACG 58.983 55.000 5.01 0.00 34.27 4.10
563 564 1.745653 GTGCTTAAGGCCATCTCCAAC 59.254 52.381 5.01 0.00 40.92 3.77
564 565 1.635487 AGTGCTTAAGGCCATCTCCAA 59.365 47.619 5.01 0.00 40.92 3.53
565 566 1.289160 AGTGCTTAAGGCCATCTCCA 58.711 50.000 5.01 0.00 40.92 3.86
566 567 2.293170 GAAGTGCTTAAGGCCATCTCC 58.707 52.381 5.01 0.00 40.92 3.71
567 568 1.936547 CGAAGTGCTTAAGGCCATCTC 59.063 52.381 5.01 0.00 40.92 2.75
568 569 2.014068 GCGAAGTGCTTAAGGCCATCT 61.014 52.381 5.01 0.00 41.73 2.90
569 570 0.378610 GCGAAGTGCTTAAGGCCATC 59.621 55.000 5.01 0.00 41.73 3.51
570 571 1.032114 GGCGAAGTGCTTAAGGCCAT 61.032 55.000 5.01 0.00 45.43 4.40
571 572 1.674322 GGCGAAGTGCTTAAGGCCA 60.674 57.895 5.01 0.00 45.43 5.36
572 573 1.369839 GAGGCGAAGTGCTTAAGGCC 61.370 60.000 4.29 7.31 45.43 5.19
573 574 0.673644 TGAGGCGAAGTGCTTAAGGC 60.674 55.000 4.29 0.00 45.43 4.35
574 575 2.029838 ATGAGGCGAAGTGCTTAAGG 57.970 50.000 4.29 0.00 45.43 2.69
575 576 3.002791 TCAATGAGGCGAAGTGCTTAAG 58.997 45.455 0.00 0.00 45.43 1.85
576 577 3.002791 CTCAATGAGGCGAAGTGCTTAA 58.997 45.455 1.53 0.00 45.43 1.85
577 578 2.621338 CTCAATGAGGCGAAGTGCTTA 58.379 47.619 1.53 0.00 45.43 3.09
578 579 1.446907 CTCAATGAGGCGAAGTGCTT 58.553 50.000 1.53 0.00 45.43 3.91
579 580 0.392193 CCTCAATGAGGCGAAGTGCT 60.392 55.000 17.25 0.00 43.29 4.40
580 581 2.093216 CCTCAATGAGGCGAAGTGC 58.907 57.895 17.25 0.00 43.29 4.40
589 590 6.323203 ACAACTCAAATCAACCTCAATGAG 57.677 37.500 2.68 2.68 40.01 2.90
590 591 5.241506 GGACAACTCAAATCAACCTCAATGA 59.758 40.000 0.00 0.00 0.00 2.57
591 592 5.009911 TGGACAACTCAAATCAACCTCAATG 59.990 40.000 0.00 0.00 0.00 2.82
592 593 5.139727 TGGACAACTCAAATCAACCTCAAT 58.860 37.500 0.00 0.00 0.00 2.57
637 638 3.488310 GCGCATTCATATTCAAAGCCTTG 59.512 43.478 0.30 0.00 0.00 3.61
653 654 1.577328 CGTCCCAAACAGAGCGCATT 61.577 55.000 11.47 0.00 0.00 3.56
665 666 2.112297 GTCCCAGCAACGTCCCAA 59.888 61.111 0.00 0.00 0.00 4.12
669 670 1.305201 TTTTCTGTCCCAGCAACGTC 58.695 50.000 0.00 0.00 0.00 4.34
866 868 4.832608 GAGGGTGCCCGCGGTTAG 62.833 72.222 26.12 10.30 41.95 2.34
880 882 2.614057 GCCATGTCTGAATTTACCGAGG 59.386 50.000 0.00 0.00 0.00 4.63
935 937 4.516321 TGATGGAGCGTCATGGATATTTTG 59.484 41.667 0.00 0.00 0.00 2.44
1249 1264 0.761802 GGGAGGAAAGCGAGGATGAT 59.238 55.000 0.00 0.00 0.00 2.45
1326 1341 0.035739 GGCTTCTACAACCACCCGAA 59.964 55.000 0.00 0.00 0.00 4.30
1524 1539 3.270000 TCGAAGTCGATGCCGTCA 58.730 55.556 0.00 0.00 44.22 4.35
1542 1557 4.521075 GCACTGCCAAGCTCGATA 57.479 55.556 0.00 0.00 0.00 2.92
1595 1610 0.388907 GCGCGGGTGTGAACTAGTTA 60.389 55.000 8.42 0.00 0.00 2.24
1622 1637 4.720090 AGACGTCAATACACGACTAGTTG 58.280 43.478 19.50 8.69 41.85 3.16
1643 1666 4.207224 GCGCCAATATATATGAGCACGTAG 59.793 45.833 14.39 3.02 0.00 3.51
1786 1809 2.028130 TGCACCCAAACAAAGTCGAAT 58.972 42.857 0.00 0.00 0.00 3.34
1810 1833 4.699637 ACTGACATTCCTCGTTGTTGTAA 58.300 39.130 0.00 0.00 0.00 2.41
2096 2119 1.531149 CAATATCGCCGGGATGAACAC 59.469 52.381 2.18 0.00 36.55 3.32
2113 2138 0.392336 ACAAAACGCCCACATGCAAT 59.608 45.000 0.00 0.00 0.00 3.56
2126 2151 5.460748 GGGCAAACAACATAGTACACAAAAC 59.539 40.000 0.00 0.00 0.00 2.43
2127 2152 5.361285 AGGGCAAACAACATAGTACACAAAA 59.639 36.000 0.00 0.00 0.00 2.44
2250 2279 4.202315 TGTGCTGAAATACTGGTACACACT 60.202 41.667 0.00 0.00 32.27 3.55
2279 2308 4.668576 ATCTACAAACTGTTGCGTGATG 57.331 40.909 0.00 0.00 38.39 3.07
2319 2348 8.207350 AGAAGAGCCAGCCATAATAGTTTATA 57.793 34.615 0.00 0.00 0.00 0.98
2320 2349 7.084268 AGAAGAGCCAGCCATAATAGTTTAT 57.916 36.000 0.00 0.00 0.00 1.40
2357 2386 6.472163 TCAATGAGTTTTCTCTTTTCGCAAAC 59.528 34.615 0.00 0.00 46.30 2.93
2378 2407 4.508047 GCATCAATCCATAGAGGGGTCAAT 60.508 45.833 0.00 0.00 38.24 2.57
2382 2411 2.107204 GTGCATCAATCCATAGAGGGGT 59.893 50.000 0.00 0.00 38.24 4.95
2443 2472 0.616679 AGCCCTGCATCCAAGCAAAT 60.617 50.000 0.00 0.00 45.13 2.32
2448 2477 3.336122 GGATAGCCCTGCATCCAAG 57.664 57.895 10.61 0.00 36.75 3.61
2510 2539 0.183971 TCCTCGCCCTTGAACCAAAA 59.816 50.000 0.00 0.00 0.00 2.44
2544 2573 5.739752 TTGTGGAATATTCGAAGCATCTG 57.260 39.130 9.32 0.00 0.00 2.90
2570 2599 0.179020 CGCAATTGGGGATAGCCTGA 60.179 55.000 14.43 0.00 0.00 3.86
2586 2615 1.300620 CGTCCACCACTTCTTCGCA 60.301 57.895 0.00 0.00 0.00 5.10
2630 2659 2.208431 CAGAAAAACATTTTGCCCGCA 58.792 42.857 0.00 0.00 0.00 5.69
2641 2670 4.381079 GGTGCACCTACAAACAGAAAAACA 60.381 41.667 29.12 0.00 0.00 2.83
2654 2687 0.032267 GATCGGCTAGGTGCACCTAC 59.968 60.000 36.63 30.07 46.48 3.18
2837 2872 6.072342 TGCGAACTACTACAATAACTCTGTGA 60.072 38.462 0.00 0.00 0.00 3.58
2847 2882 6.043411 GGAGAGAATTGCGAACTACTACAAT 58.957 40.000 0.00 0.00 34.30 2.71
2858 2893 2.857483 TGTTTTGGGAGAGAATTGCGA 58.143 42.857 0.00 0.00 0.00 5.10
2870 2905 4.892433 TCAAACCAATGCTATGTTTTGGG 58.108 39.130 10.64 0.00 43.39 4.12
2883 2918 5.768317 ACGATTGAAACGAATCAAACCAAT 58.232 33.333 0.89 0.00 42.22 3.16
2894 2929 1.127766 CGGATGCAACGATTGAAACGA 59.872 47.619 8.30 0.00 34.70 3.85
2914 2949 4.978083 ATGCTTGGATGAACATCTTCAC 57.022 40.909 13.34 4.00 39.28 3.18
2957 2992 5.233476 TCACGAACTCACAACTACAATCAAC 59.767 40.000 0.00 0.00 0.00 3.18
2964 2999 3.366440 AGGTCACGAACTCACAACTAC 57.634 47.619 0.00 0.00 0.00 2.73
2995 3030 2.674380 GGTGGCCAGAGCAAGTGG 60.674 66.667 5.11 0.00 42.56 4.00
2996 3031 1.673665 GAGGTGGCCAGAGCAAGTG 60.674 63.158 5.11 0.00 42.56 3.16
3005 3040 0.984230 CTAAGTTGAGGAGGTGGCCA 59.016 55.000 0.00 0.00 0.00 5.36
3023 3058 2.039624 AGGTGGCCGATGGAGACT 59.960 61.111 0.00 0.00 0.00 3.24
3030 3065 2.427245 CGAAGAGGAGGTGGCCGAT 61.427 63.158 0.00 0.00 0.00 4.18
3033 3068 2.579738 GACGAAGAGGAGGTGGCC 59.420 66.667 0.00 0.00 0.00 5.36
3105 3140 3.436496 CGTCTTTGAAGTCCTCGGATAC 58.564 50.000 0.00 0.00 0.00 2.24
3108 3143 0.038526 GCGTCTTTGAAGTCCTCGGA 60.039 55.000 0.00 0.00 0.00 4.55
3118 3153 4.376615 CGACCGAATTTTTAGCGTCTTTGA 60.377 41.667 0.00 0.00 0.00 2.69
3134 3169 2.400399 GTGAAGATGAACACGACCGAA 58.600 47.619 0.00 0.00 0.00 4.30
3151 3186 2.269172 TGTTTTGTTGTCGTAGCGTGA 58.731 42.857 0.00 0.00 0.00 4.35
3155 3190 4.146443 GCTCATTTGTTTTGTTGTCGTAGC 59.854 41.667 0.00 0.00 0.00 3.58
3170 3205 1.213537 CCAACCGCTGGCTCATTTG 59.786 57.895 0.00 0.00 38.76 2.32
3171 3206 0.962356 CTCCAACCGCTGGCTCATTT 60.962 55.000 0.00 0.00 45.98 2.32
3235 3271 3.829044 TACCATCGTCCGCGTGGG 61.829 66.667 16.49 1.03 40.77 4.61
3237 3273 2.947621 CGTACCATCGTCCGCGTG 60.948 66.667 4.92 0.00 39.49 5.34
3241 3277 1.515519 CACACCGTACCATCGTCCG 60.516 63.158 0.00 0.00 0.00 4.79
3242 3278 1.153706 CCACACCGTACCATCGTCC 60.154 63.158 0.00 0.00 0.00 4.79
3247 3283 1.515081 CGAAAACCACACCGTACCAT 58.485 50.000 0.00 0.00 0.00 3.55
3252 3288 3.273834 CGCCGAAAACCACACCGT 61.274 61.111 0.00 0.00 0.00 4.83
3256 3292 2.829003 TTGCCGCCGAAAACCACA 60.829 55.556 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.