Multiple sequence alignment - TraesCS3A01G371200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G371200 chr3A 100.000 3578 0 0 1 3578 621514548 621518125 0.000000e+00 6608.0
1 TraesCS3A01G371200 chr3D 92.377 2768 105 47 228 2924 478062959 478060227 0.000000e+00 3845.0
2 TraesCS3A01G371200 chr3D 90.805 87 7 1 3175 3261 478060005 478059920 8.120000e-22 115.0
3 TraesCS3A01G371200 chr3D 88.889 81 7 1 1638 1718 108278561 108278483 8.180000e-17 99.0
4 TraesCS3A01G371200 chr3B 92.029 2760 108 34 229 2933 637337552 637334850 0.000000e+00 3775.0
5 TraesCS3A01G371200 chr3B 86.316 190 18 7 3178 3363 637334158 637333973 2.180000e-47 200.0
6 TraesCS3A01G371200 chr3B 90.000 70 4 1 95 164 637340220 637340154 1.770000e-13 87.9
7 TraesCS3A01G371200 chr1A 83.753 1508 206 29 1079 2562 472550441 472551933 0.000000e+00 1391.0
8 TraesCS3A01G371200 chr1D 83.333 1512 213 29 1079 2566 373116147 373117643 0.000000e+00 1360.0
9 TraesCS3A01G371200 chr1D 92.683 41 2 1 3109 3149 200218338 200218377 1.390000e-04 58.4
10 TraesCS3A01G371200 chr1B 83.101 1509 218 26 1079 2564 498063516 498065010 0.000000e+00 1339.0
11 TraesCS3A01G371200 chr4D 74.387 1019 211 34 1567 2551 115543351 115542349 1.200000e-104 390.0
12 TraesCS3A01G371200 chr4A 74.060 1037 219 35 1550 2551 461354457 461355478 2.610000e-101 379.0
13 TraesCS3A01G371200 chr7D 86.316 285 36 1 1638 1922 426500488 426500207 1.250000e-79 307.0
14 TraesCS3A01G371200 chr2D 72.579 919 201 39 1567 2464 618645761 618646649 1.650000e-63 254.0
15 TraesCS3A01G371200 chr2D 72.422 892 195 39 1567 2437 618531830 618530969 1.660000e-58 237.0
16 TraesCS3A01G371200 chr7B 87.156 109 14 0 1049 1157 443705464 443705356 1.350000e-24 124.0
17 TraesCS3A01G371200 chr7B 93.023 43 2 1 3100 3141 122781127 122781169 1.070000e-05 62.1
18 TraesCS3A01G371200 chr7B 87.755 49 3 3 3094 3141 11250929 11250975 2.000000e-03 54.7
19 TraesCS3A01G371200 chr2A 75.556 225 45 10 2109 2328 771539727 771539946 6.320000e-18 102.0
20 TraesCS3A01G371200 chr2A 100.000 29 0 0 3145 3173 1321608 1321580 2.000000e-03 54.7
21 TraesCS3A01G371200 chrUn 93.023 43 2 1 3100 3141 155121207 155121165 1.070000e-05 62.1
22 TraesCS3A01G371200 chrUn 93.023 43 2 1 3100 3141 164263968 164264010 1.070000e-05 62.1
23 TraesCS3A01G371200 chrUn 93.023 43 2 1 3100 3141 391473280 391473238 1.070000e-05 62.1
24 TraesCS3A01G371200 chr7A 100.000 33 0 0 3145 3177 536122785 536122817 1.070000e-05 62.1
25 TraesCS3A01G371200 chr4B 94.872 39 2 0 3104 3142 371976023 371976061 1.070000e-05 62.1
26 TraesCS3A01G371200 chr4B 92.105 38 3 0 3145 3182 166236454 166236417 2.000000e-03 54.7
27 TraesCS3A01G371200 chr2B 95.000 40 1 1 3110 3149 403101713 403101675 1.070000e-05 62.1
28 TraesCS3A01G371200 chr2B 85.484 62 4 1 3105 3161 693327253 693327314 3.860000e-05 60.2
29 TraesCS3A01G371200 chr5A 100.000 29 0 0 3145 3173 671402571 671402599 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G371200 chr3A 621514548 621518125 3577 False 6608.0 6608 100.000000 1 3578 1 chr3A.!!$F1 3577
1 TraesCS3A01G371200 chr3D 478059920 478062959 3039 True 1980.0 3845 91.591000 228 3261 2 chr3D.!!$R2 3033
2 TraesCS3A01G371200 chr3B 637333973 637340220 6247 True 1354.3 3775 89.448333 95 3363 3 chr3B.!!$R1 3268
3 TraesCS3A01G371200 chr1A 472550441 472551933 1492 False 1391.0 1391 83.753000 1079 2562 1 chr1A.!!$F1 1483
4 TraesCS3A01G371200 chr1D 373116147 373117643 1496 False 1360.0 1360 83.333000 1079 2566 1 chr1D.!!$F2 1487
5 TraesCS3A01G371200 chr1B 498063516 498065010 1494 False 1339.0 1339 83.101000 1079 2564 1 chr1B.!!$F1 1485
6 TraesCS3A01G371200 chr4D 115542349 115543351 1002 True 390.0 390 74.387000 1567 2551 1 chr4D.!!$R1 984
7 TraesCS3A01G371200 chr4A 461354457 461355478 1021 False 379.0 379 74.060000 1550 2551 1 chr4A.!!$F1 1001
8 TraesCS3A01G371200 chr2D 618645761 618646649 888 False 254.0 254 72.579000 1567 2464 1 chr2D.!!$F1 897
9 TraesCS3A01G371200 chr2D 618530969 618531830 861 True 237.0 237 72.422000 1567 2437 1 chr2D.!!$R1 870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
285 2824 0.103208 CAGACGGGCAGAGATGTACC 59.897 60.0 0.0 0.0 0.0 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2628 5296 1.329292 CTGTTGCAAAGGACGAAACGA 59.671 47.619 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.712152 GGAATTCAACATTCTGAAGGTGT 57.288 39.130 8.60 0.00 38.66 4.16
23 24 5.464168 GGAATTCAACATTCTGAAGGTGTG 58.536 41.667 8.60 9.16 38.66 3.82
24 25 5.241506 GGAATTCAACATTCTGAAGGTGTGA 59.758 40.000 8.60 11.08 38.66 3.58
25 26 5.695851 ATTCAACATTCTGAAGGTGTGAC 57.304 39.130 8.60 0.00 38.66 3.67
26 27 4.422073 TCAACATTCTGAAGGTGTGACT 57.578 40.909 8.60 0.00 0.00 3.41
27 28 4.129380 TCAACATTCTGAAGGTGTGACTG 58.871 43.478 8.60 3.22 0.00 3.51
28 29 3.131709 ACATTCTGAAGGTGTGACTGG 57.868 47.619 6.93 0.00 0.00 4.00
29 30 2.224621 ACATTCTGAAGGTGTGACTGGG 60.225 50.000 6.93 0.00 0.00 4.45
30 31 0.764890 TTCTGAAGGTGTGACTGGGG 59.235 55.000 0.00 0.00 0.00 4.96
31 32 0.105194 TCTGAAGGTGTGACTGGGGA 60.105 55.000 0.00 0.00 0.00 4.81
32 33 0.764890 CTGAAGGTGTGACTGGGGAA 59.235 55.000 0.00 0.00 0.00 3.97
33 34 1.352352 CTGAAGGTGTGACTGGGGAAT 59.648 52.381 0.00 0.00 0.00 3.01
34 35 1.780309 TGAAGGTGTGACTGGGGAATT 59.220 47.619 0.00 0.00 0.00 2.17
35 36 2.176798 TGAAGGTGTGACTGGGGAATTT 59.823 45.455 0.00 0.00 0.00 1.82
36 37 3.230976 GAAGGTGTGACTGGGGAATTTT 58.769 45.455 0.00 0.00 0.00 1.82
37 38 3.328535 AGGTGTGACTGGGGAATTTTT 57.671 42.857 0.00 0.00 0.00 1.94
59 60 5.975410 TTTTTGCACCCACGAAAATAAAG 57.025 34.783 0.00 0.00 29.81 1.85
60 61 4.920640 TTTGCACCCACGAAAATAAAGA 57.079 36.364 0.00 0.00 0.00 2.52
61 62 3.907894 TGCACCCACGAAAATAAAGAC 57.092 42.857 0.00 0.00 0.00 3.01
62 63 2.224549 TGCACCCACGAAAATAAAGACG 59.775 45.455 0.00 0.00 0.00 4.18
63 64 2.224784 GCACCCACGAAAATAAAGACGT 59.775 45.455 0.00 0.00 39.53 4.34
70 71 5.137403 CACGAAAATAAAGACGTGTTGAGG 58.863 41.667 0.00 0.00 46.75 3.86
71 72 4.212636 ACGAAAATAAAGACGTGTTGAGGG 59.787 41.667 0.00 0.00 37.58 4.30
72 73 4.378046 CGAAAATAAAGACGTGTTGAGGGG 60.378 45.833 0.00 0.00 0.00 4.79
73 74 2.109425 ATAAAGACGTGTTGAGGGGC 57.891 50.000 0.00 0.00 0.00 5.80
74 75 0.320073 TAAAGACGTGTTGAGGGGCG 60.320 55.000 0.00 0.00 0.00 6.13
75 76 3.530910 AAGACGTGTTGAGGGGCGG 62.531 63.158 0.00 0.00 0.00 6.13
76 77 4.309950 GACGTGTTGAGGGGCGGT 62.310 66.667 0.00 0.00 0.00 5.68
77 78 4.619227 ACGTGTTGAGGGGCGGTG 62.619 66.667 0.00 0.00 0.00 4.94
91 92 4.479993 GGTGCGGCTGGAGATGCT 62.480 66.667 0.00 0.00 0.00 3.79
92 93 2.894387 GTGCGGCTGGAGATGCTC 60.894 66.667 0.00 0.00 0.00 4.26
140 141 4.873129 CGGCGCAGGTAGCACGAT 62.873 66.667 10.83 0.00 46.13 3.73
141 142 2.415843 GGCGCAGGTAGCACGATA 59.584 61.111 10.83 0.00 46.13 2.92
142 143 1.661821 GGCGCAGGTAGCACGATAG 60.662 63.158 10.83 0.00 46.13 2.08
157 158 1.066605 CGATAGTGTCCTTGTACCCGG 59.933 57.143 0.00 0.00 0.00 5.73
164 165 2.192175 CTTGTACCCGGGGGCATC 59.808 66.667 27.92 10.42 39.32 3.91
165 166 3.750373 CTTGTACCCGGGGGCATCG 62.750 68.421 27.92 12.76 39.32 3.84
195 196 0.514255 CGCATACCGCCATTGATGAG 59.486 55.000 0.00 0.00 37.30 2.90
196 197 1.597742 GCATACCGCCATTGATGAGT 58.402 50.000 0.00 0.00 32.94 3.41
197 198 1.949525 GCATACCGCCATTGATGAGTT 59.050 47.619 0.00 0.00 32.94 3.01
198 199 2.358898 GCATACCGCCATTGATGAGTTT 59.641 45.455 0.00 0.00 32.94 2.66
199 200 3.563808 GCATACCGCCATTGATGAGTTTA 59.436 43.478 0.00 0.00 32.94 2.01
201 202 3.350219 ACCGCCATTGATGAGTTTACT 57.650 42.857 0.00 0.00 0.00 2.24
206 1322 2.223340 CCATTGATGAGTTTACTGCGCC 60.223 50.000 4.18 0.00 0.00 6.53
212 1328 1.956620 GAGTTTACTGCGCCGCTGTC 61.957 60.000 24.76 11.20 40.85 3.51
254 2793 0.806492 GGTGAGAAAGATCGGTCGGC 60.806 60.000 0.00 0.00 0.00 5.54
280 2819 1.965754 GAAGGCAGACGGGCAGAGAT 61.966 60.000 1.39 0.00 46.44 2.75
285 2824 0.103208 CAGACGGGCAGAGATGTACC 59.897 60.000 0.00 0.00 0.00 3.34
294 2833 4.791069 AGATGTACCCCGGGCGGT 62.791 66.667 17.73 11.86 40.13 5.68
310 2853 4.863925 GTCCGGCGCTGCTCTCTC 62.864 72.222 11.81 0.00 0.00 3.20
312 2855 4.869440 CCGGCGCTGCTCTCTCTG 62.869 72.222 11.81 0.00 0.00 3.35
313 2856 4.127040 CGGCGCTGCTCTCTCTGT 62.127 66.667 7.64 0.00 0.00 3.41
314 2857 2.264166 GGCGCTGCTCTCTCTGTT 59.736 61.111 7.64 0.00 0.00 3.16
315 2858 2.099431 GGCGCTGCTCTCTCTGTTG 61.099 63.158 7.64 0.00 0.00 3.33
316 2859 2.738695 GCGCTGCTCTCTCTGTTGC 61.739 63.158 0.00 0.00 0.00 4.17
327 2870 4.400109 CTGTTGCTGCTGCGCCTG 62.400 66.667 4.18 0.00 43.34 4.85
350 2893 0.326264 AAGCTAGTGGGCACTGGAAG 59.674 55.000 0.00 0.00 41.75 3.46
403 2946 1.077285 TGGATCGGCGACTAGTCCA 60.077 57.895 22.29 22.29 36.66 4.02
404 2947 0.681887 TGGATCGGCGACTAGTCCAA 60.682 55.000 23.49 10.33 36.12 3.53
405 2948 0.674534 GGATCGGCGACTAGTCCAAT 59.325 55.000 19.46 5.59 0.00 3.16
406 2949 1.884579 GGATCGGCGACTAGTCCAATA 59.115 52.381 19.46 1.43 0.00 1.90
407 2950 2.095161 GGATCGGCGACTAGTCCAATAG 60.095 54.545 19.46 3.91 0.00 1.73
408 2951 2.048444 TCGGCGACTAGTCCAATAGT 57.952 50.000 17.23 0.00 38.72 2.12
409 2952 3.198409 TCGGCGACTAGTCCAATAGTA 57.802 47.619 17.23 0.00 36.13 1.82
410 2953 3.136763 TCGGCGACTAGTCCAATAGTAG 58.863 50.000 17.23 1.73 36.13 2.57
411 2954 2.877168 CGGCGACTAGTCCAATAGTAGT 59.123 50.000 17.23 0.00 45.33 2.73
412 2955 3.303857 CGGCGACTAGTCCAATAGTAGTG 60.304 52.174 17.23 0.30 43.17 2.74
413 2956 3.004524 GGCGACTAGTCCAATAGTAGTGG 59.995 52.174 17.23 10.47 43.17 4.00
414 2957 3.631227 GCGACTAGTCCAATAGTAGTGGT 59.369 47.826 17.23 0.95 43.17 4.16
447 2990 1.381327 GTCTGGATCGTGGGAGGGA 60.381 63.158 0.00 0.00 0.00 4.20
450 2993 3.551407 GGATCGTGGGAGGGAGGC 61.551 72.222 0.00 0.00 0.00 4.70
451 2994 2.764128 GATCGTGGGAGGGAGGCA 60.764 66.667 0.00 0.00 0.00 4.75
452 2995 3.083997 ATCGTGGGAGGGAGGCAC 61.084 66.667 0.00 0.00 0.00 5.01
496 3039 2.437897 CTCTGGCTGGCCCAAGTT 59.562 61.111 9.28 0.00 44.81 2.66
544 3087 1.875364 GACCGGGTATTGACGTCGC 60.875 63.158 11.62 0.93 0.00 5.19
572 3115 3.063704 CCGGGCCGGGGTAAAAAC 61.064 66.667 37.27 0.00 44.15 2.43
667 3229 1.212616 GCAGCACTGTTCCTATAGCG 58.787 55.000 0.00 0.00 0.00 4.26
738 3307 3.404141 GACCGAGGTGAGCTCGAGC 62.404 68.421 32.45 30.01 46.06 5.03
791 3370 1.374252 CGGTCAAAGTCACGAGGGG 60.374 63.158 0.00 0.00 0.00 4.79
794 3373 1.608283 GGTCAAAGTCACGAGGGGAAG 60.608 57.143 0.00 0.00 0.00 3.46
820 3399 2.202987 GCGAGAGTCCATGCCCAG 60.203 66.667 0.00 0.00 0.00 4.45
926 3516 4.394712 ACCGCCCGCAGAAGGAAG 62.395 66.667 0.00 0.00 0.00 3.46
930 3520 4.803908 CCCGCAGAAGGAAGCCCC 62.804 72.222 0.00 0.00 0.00 5.80
1704 4302 2.431942 GTGTCGGCGTTCGTGGAT 60.432 61.111 6.85 0.00 40.32 3.41
2283 4917 3.550431 ATGGGCCGGATGGAGTCG 61.550 66.667 5.05 0.00 37.49 4.18
2467 5107 3.467226 TCCGGGGCTTCGACATCC 61.467 66.667 0.00 0.00 0.00 3.51
2628 5296 3.182967 CTCTTGTTCGCTTATTCTCGCT 58.817 45.455 0.00 0.00 0.00 4.93
2643 5311 1.154654 CGCTCGTTTCGTCCTTTGC 60.155 57.895 0.00 0.00 0.00 3.68
2754 5422 2.675056 GCAGCGGATCGATGATGCC 61.675 63.158 13.35 3.07 46.56 4.40
2771 5439 1.129326 GCCGGACGATTGATTAGTCG 58.871 55.000 5.05 0.70 43.13 4.18
2772 5440 1.767289 CCGGACGATTGATTAGTCGG 58.233 55.000 0.00 0.00 41.87 4.79
2773 5441 1.066605 CCGGACGATTGATTAGTCGGT 59.933 52.381 0.00 0.00 41.87 4.69
2774 5442 2.291465 CCGGACGATTGATTAGTCGGTA 59.709 50.000 0.00 0.00 41.87 4.02
2775 5443 3.057736 CCGGACGATTGATTAGTCGGTAT 60.058 47.826 0.00 0.00 41.87 2.73
2799 5467 0.737715 GTACGCAGCTCTCCACTTGG 60.738 60.000 0.00 0.00 0.00 3.61
2868 5536 4.507756 CGACAGCAAATTATTGAGATCGGA 59.492 41.667 0.00 0.00 38.94 4.55
2892 5560 1.981668 CTTCAGTTACGCGCGACTC 59.018 57.895 39.36 23.68 0.00 3.36
2895 5563 0.728129 TCAGTTACGCGCGACTCTTG 60.728 55.000 39.36 24.90 0.00 3.02
2949 5649 4.083324 ACCGTTGTGCACTTGATATGAAAG 60.083 41.667 19.41 3.46 0.00 2.62
2955 5655 7.928908 TGTGCACTTGATATGAAAGAAAAAC 57.071 32.000 19.41 0.00 0.00 2.43
2956 5656 7.487484 TGTGCACTTGATATGAAAGAAAAACA 58.513 30.769 19.41 0.00 0.00 2.83
2957 5657 7.648908 TGTGCACTTGATATGAAAGAAAAACAG 59.351 33.333 19.41 0.00 0.00 3.16
2958 5658 7.649306 GTGCACTTGATATGAAAGAAAAACAGT 59.351 33.333 10.32 0.00 0.00 3.55
2959 5659 8.845227 TGCACTTGATATGAAAGAAAAACAGTA 58.155 29.630 2.48 0.00 0.00 2.74
3122 6303 8.788325 AAATGTGAGTAATAACTTGTACTCCC 57.212 34.615 8.04 0.00 43.71 4.30
3124 6305 7.166691 TGTGAGTAATAACTTGTACTCCCTC 57.833 40.000 8.04 0.00 43.71 4.30
3125 6306 6.154021 TGTGAGTAATAACTTGTACTCCCTCC 59.846 42.308 8.04 0.00 43.71 4.30
3126 6307 5.359009 TGAGTAATAACTTGTACTCCCTCCG 59.641 44.000 8.04 0.00 43.71 4.63
3127 6308 5.267587 AGTAATAACTTGTACTCCCTCCGT 58.732 41.667 0.00 0.00 29.00 4.69
3128 6309 4.732672 AATAACTTGTACTCCCTCCGTC 57.267 45.455 0.00 0.00 0.00 4.79
3129 6310 1.264295 AACTTGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
3130 6311 0.614134 ACTTGTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
3131 6312 0.613853 CTTGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
3132 6313 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
3133 6314 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
3134 6315 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3135 6316 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3136 6317 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3137 6318 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3138 6319 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3139 6320 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3140 6321 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3141 6322 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
3142 6323 3.270877 CCTCCGTCCCAAAATAAGTGAG 58.729 50.000 0.00 0.00 0.00 3.51
3143 6324 2.678336 CTCCGTCCCAAAATAAGTGAGC 59.322 50.000 0.00 0.00 0.00 4.26
3144 6325 2.304761 TCCGTCCCAAAATAAGTGAGCT 59.695 45.455 0.00 0.00 0.00 4.09
3145 6326 3.081804 CCGTCCCAAAATAAGTGAGCTT 58.918 45.455 0.00 0.00 38.66 3.74
3146 6327 3.119849 CCGTCCCAAAATAAGTGAGCTTG 60.120 47.826 0.00 0.00 36.22 4.01
3147 6328 3.751175 CGTCCCAAAATAAGTGAGCTTGA 59.249 43.478 0.00 0.00 36.22 3.02
3148 6329 4.142816 CGTCCCAAAATAAGTGAGCTTGAG 60.143 45.833 0.00 0.00 36.22 3.02
3149 6330 5.003804 GTCCCAAAATAAGTGAGCTTGAGA 58.996 41.667 0.00 0.00 36.22 3.27
3150 6331 5.003804 TCCCAAAATAAGTGAGCTTGAGAC 58.996 41.667 0.00 0.00 36.22 3.36
3151 6332 4.761739 CCCAAAATAAGTGAGCTTGAGACA 59.238 41.667 0.00 0.00 36.22 3.41
3152 6333 5.335191 CCCAAAATAAGTGAGCTTGAGACAC 60.335 44.000 0.00 0.00 36.22 3.67
3153 6334 5.471456 CCAAAATAAGTGAGCTTGAGACACT 59.529 40.000 0.00 0.00 45.02 3.55
3160 6341 6.551385 AGTGAGCTTGAGACACTTATTTTG 57.449 37.500 0.00 0.00 41.21 2.44
3161 6342 6.291377 AGTGAGCTTGAGACACTTATTTTGA 58.709 36.000 0.00 0.00 41.21 2.69
3162 6343 6.767902 AGTGAGCTTGAGACACTTATTTTGAA 59.232 34.615 0.00 0.00 41.21 2.69
3163 6344 7.283127 AGTGAGCTTGAGACACTTATTTTGAAA 59.717 33.333 0.00 0.00 41.21 2.69
3164 6345 7.377131 GTGAGCTTGAGACACTTATTTTGAAAC 59.623 37.037 0.00 0.00 0.00 2.78
3165 6346 7.066887 TGAGCTTGAGACACTTATTTTGAAACA 59.933 33.333 0.00 0.00 0.00 2.83
3166 6347 7.771183 AGCTTGAGACACTTATTTTGAAACAA 58.229 30.769 0.00 0.00 0.00 2.83
3167 6348 8.250332 AGCTTGAGACACTTATTTTGAAACAAA 58.750 29.630 0.00 0.00 0.00 2.83
3168 6349 8.534778 GCTTGAGACACTTATTTTGAAACAAAG 58.465 33.333 0.00 0.00 0.00 2.77
3169 6350 8.925161 TTGAGACACTTATTTTGAAACAAAGG 57.075 30.769 0.00 0.00 0.00 3.11
3170 6351 7.488322 TGAGACACTTATTTTGAAACAAAGGG 58.512 34.615 0.00 0.53 0.00 3.95
3171 6352 7.340743 TGAGACACTTATTTTGAAACAAAGGGA 59.659 33.333 7.47 0.00 0.00 4.20
3172 6353 7.716612 AGACACTTATTTTGAAACAAAGGGAG 58.283 34.615 7.47 0.00 0.00 4.30
3173 6354 6.280643 ACACTTATTTTGAAACAAAGGGAGC 58.719 36.000 7.47 0.00 0.00 4.70
3174 6355 6.127196 ACACTTATTTTGAAACAAAGGGAGCA 60.127 34.615 7.47 0.00 0.00 4.26
3175 6356 6.930722 CACTTATTTTGAAACAAAGGGAGCAT 59.069 34.615 0.00 0.00 0.00 3.79
3176 6357 8.087750 CACTTATTTTGAAACAAAGGGAGCATA 58.912 33.333 0.00 0.00 0.00 3.14
3177 6358 8.815912 ACTTATTTTGAAACAAAGGGAGCATAT 58.184 29.630 0.00 0.00 0.00 1.78
3180 6361 7.775053 TTTTGAAACAAAGGGAGCATATAGT 57.225 32.000 0.00 0.00 0.00 2.12
3181 6362 6.757897 TTGAAACAAAGGGAGCATATAGTG 57.242 37.500 0.00 0.00 0.00 2.74
3182 6363 5.815581 TGAAACAAAGGGAGCATATAGTGT 58.184 37.500 0.00 0.00 0.00 3.55
3183 6364 6.245408 TGAAACAAAGGGAGCATATAGTGTT 58.755 36.000 0.00 0.00 0.00 3.32
3184 6365 7.398829 TGAAACAAAGGGAGCATATAGTGTTA 58.601 34.615 0.00 0.00 0.00 2.41
3224 6405 3.600388 ACCATGAAAGTCATTCCTCGAC 58.400 45.455 0.00 0.00 34.28 4.20
3349 6532 1.070134 GCATATACACCCGAGAGCCAA 59.930 52.381 0.00 0.00 0.00 4.52
3350 6533 2.484770 GCATATACACCCGAGAGCCAAA 60.485 50.000 0.00 0.00 0.00 3.28
3351 6534 2.973694 TATACACCCGAGAGCCAAAC 57.026 50.000 0.00 0.00 0.00 2.93
3353 6536 0.834687 TACACCCGAGAGCCAAACCT 60.835 55.000 0.00 0.00 0.00 3.50
3354 6537 1.376037 CACCCGAGAGCCAAACCTC 60.376 63.158 0.00 0.00 0.00 3.85
3356 6539 2.125512 CCGAGAGCCAAACCTCCG 60.126 66.667 0.00 0.00 32.17 4.63
3360 6543 0.606673 GAGAGCCAAACCTCCGCTTT 60.607 55.000 0.00 0.00 31.61 3.51
3361 6544 0.606673 AGAGCCAAACCTCCGCTTTC 60.607 55.000 0.00 0.00 31.61 2.62
3362 6545 0.889186 GAGCCAAACCTCCGCTTTCA 60.889 55.000 0.00 0.00 31.61 2.69
3363 6546 0.467290 AGCCAAACCTCCGCTTTCAA 60.467 50.000 0.00 0.00 0.00 2.69
3364 6547 0.318699 GCCAAACCTCCGCTTTCAAC 60.319 55.000 0.00 0.00 0.00 3.18
3365 6548 1.318576 CCAAACCTCCGCTTTCAACT 58.681 50.000 0.00 0.00 0.00 3.16
3366 6549 1.001378 CCAAACCTCCGCTTTCAACTG 60.001 52.381 0.00 0.00 0.00 3.16
3367 6550 1.946768 CAAACCTCCGCTTTCAACTGA 59.053 47.619 0.00 0.00 0.00 3.41
3368 6551 1.594331 AACCTCCGCTTTCAACTGAC 58.406 50.000 0.00 0.00 0.00 3.51
3369 6552 0.600255 ACCTCCGCTTTCAACTGACG 60.600 55.000 0.00 0.00 0.00 4.35
3370 6553 1.291877 CCTCCGCTTTCAACTGACGG 61.292 60.000 0.00 0.00 45.15 4.79
3371 6554 1.291877 CTCCGCTTTCAACTGACGGG 61.292 60.000 7.23 0.00 43.96 5.28
3372 6555 1.597027 CCGCTTTCAACTGACGGGT 60.597 57.895 0.00 0.00 40.18 5.28
3373 6556 1.566018 CCGCTTTCAACTGACGGGTC 61.566 60.000 0.00 0.00 40.18 4.46
3374 6557 0.878523 CGCTTTCAACTGACGGGTCA 60.879 55.000 1.05 1.05 38.06 4.02
3382 6565 4.868026 TGACGGGTCAGGTTTGTG 57.132 55.556 0.00 0.00 34.14 3.33
3383 6566 1.525077 TGACGGGTCAGGTTTGTGC 60.525 57.895 0.00 0.00 34.14 4.57
3384 6567 1.525077 GACGGGTCAGGTTTGTGCA 60.525 57.895 0.00 0.00 0.00 4.57
3385 6568 1.782028 GACGGGTCAGGTTTGTGCAC 61.782 60.000 10.75 10.75 0.00 4.57
3386 6569 1.525995 CGGGTCAGGTTTGTGCACT 60.526 57.895 19.41 0.00 0.00 4.40
3387 6570 1.101049 CGGGTCAGGTTTGTGCACTT 61.101 55.000 19.41 0.00 0.00 3.16
3388 6571 0.668535 GGGTCAGGTTTGTGCACTTC 59.331 55.000 19.41 8.07 0.00 3.01
3389 6572 1.388547 GGTCAGGTTTGTGCACTTCA 58.611 50.000 19.41 0.00 0.00 3.02
3390 6573 1.334869 GGTCAGGTTTGTGCACTTCAG 59.665 52.381 19.41 3.45 0.00 3.02
3391 6574 1.024271 TCAGGTTTGTGCACTTCAGC 58.976 50.000 19.41 11.09 0.00 4.26
3392 6575 1.027357 CAGGTTTGTGCACTTCAGCT 58.973 50.000 19.41 13.17 34.99 4.24
3393 6576 1.406539 CAGGTTTGTGCACTTCAGCTT 59.593 47.619 19.41 0.00 34.99 3.74
3394 6577 2.618241 CAGGTTTGTGCACTTCAGCTTA 59.382 45.455 19.41 0.00 34.99 3.09
3395 6578 3.066621 CAGGTTTGTGCACTTCAGCTTAA 59.933 43.478 19.41 0.00 34.99 1.85
3396 6579 3.066760 AGGTTTGTGCACTTCAGCTTAAC 59.933 43.478 19.41 8.73 34.99 2.01
3397 6580 3.035942 GTTTGTGCACTTCAGCTTAACG 58.964 45.455 19.41 0.00 34.99 3.18
3398 6581 0.586319 TGTGCACTTCAGCTTAACGC 59.414 50.000 19.41 0.00 39.57 4.84
3410 6593 3.505464 GCTTAACGCTCTCCACTCTAA 57.495 47.619 0.00 0.00 35.14 2.10
3411 6594 3.440228 GCTTAACGCTCTCCACTCTAAG 58.560 50.000 0.00 0.00 35.14 2.18
3412 6595 3.735514 GCTTAACGCTCTCCACTCTAAGG 60.736 52.174 0.00 0.00 35.14 2.69
3413 6596 1.187087 AACGCTCTCCACTCTAAGGG 58.813 55.000 0.00 0.00 0.00 3.95
3414 6597 0.684805 ACGCTCTCCACTCTAAGGGG 60.685 60.000 0.00 0.00 41.27 4.79
3423 6606 3.980698 TCCACTCTAAGGGGAAATATGGG 59.019 47.826 0.00 0.00 46.82 4.00
3424 6607 3.980698 CCACTCTAAGGGGAAATATGGGA 59.019 47.826 0.00 0.00 43.10 4.37
3425 6608 4.202472 CCACTCTAAGGGGAAATATGGGAC 60.202 50.000 0.00 0.00 43.10 4.46
3426 6609 6.643884 CCACTCTAAGGGGAAATATGGGACA 61.644 48.000 0.00 0.00 43.10 4.02
3427 6610 7.896276 CCACTCTAAGGGGAAATATGGGACAT 61.896 46.154 0.00 0.00 43.10 3.06
3428 6611 8.632954 CCACTCTAAGGGGAAATATGGGACATA 61.633 44.444 0.00 0.00 43.10 2.29
3456 6639 9.502035 TTTAAATGGATTCTACTCCTAGAAGGA 57.498 33.333 0.00 0.00 43.43 3.36
3470 6653 7.569599 TCCTAGAAGGAGGTAAAAGAAATGT 57.430 36.000 0.00 0.00 40.06 2.71
3471 6654 7.621796 TCCTAGAAGGAGGTAAAAGAAATGTC 58.378 38.462 0.00 0.00 40.06 3.06
3472 6655 6.535508 CCTAGAAGGAGGTAAAAGAAATGTCG 59.464 42.308 0.00 0.00 37.67 4.35
3473 6656 5.866207 AGAAGGAGGTAAAAGAAATGTCGT 58.134 37.500 0.00 0.00 0.00 4.34
3474 6657 5.701290 AGAAGGAGGTAAAAGAAATGTCGTG 59.299 40.000 0.00 0.00 0.00 4.35
3475 6658 4.969484 AGGAGGTAAAAGAAATGTCGTGT 58.031 39.130 0.00 0.00 0.00 4.49
3476 6659 5.374071 AGGAGGTAAAAGAAATGTCGTGTT 58.626 37.500 0.00 0.00 0.00 3.32
3477 6660 5.238650 AGGAGGTAAAAGAAATGTCGTGTTG 59.761 40.000 0.00 0.00 0.00 3.33
3478 6661 5.237779 GGAGGTAAAAGAAATGTCGTGTTGA 59.762 40.000 0.00 0.00 0.00 3.18
3479 6662 6.238538 GGAGGTAAAAGAAATGTCGTGTTGAA 60.239 38.462 0.00 0.00 0.00 2.69
3480 6663 6.492254 AGGTAAAAGAAATGTCGTGTTGAAC 58.508 36.000 0.00 0.00 0.00 3.18
3481 6664 6.094325 AGGTAAAAGAAATGTCGTGTTGAACA 59.906 34.615 0.00 0.00 0.00 3.18
3482 6665 6.413818 GGTAAAAGAAATGTCGTGTTGAACAG 59.586 38.462 0.00 0.00 0.00 3.16
3483 6666 5.560966 AAAGAAATGTCGTGTTGAACAGT 57.439 34.783 0.00 0.00 0.00 3.55
3484 6667 4.536364 AGAAATGTCGTGTTGAACAGTG 57.464 40.909 0.00 0.00 0.00 3.66
3485 6668 3.312421 AGAAATGTCGTGTTGAACAGTGG 59.688 43.478 0.00 0.00 0.00 4.00
3486 6669 2.325583 ATGTCGTGTTGAACAGTGGT 57.674 45.000 0.00 0.00 0.00 4.16
3487 6670 2.102070 TGTCGTGTTGAACAGTGGTT 57.898 45.000 0.00 0.00 40.76 3.67
3488 6671 1.735018 TGTCGTGTTGAACAGTGGTTG 59.265 47.619 0.00 0.00 37.36 3.77
3489 6672 0.730265 TCGTGTTGAACAGTGGTTGC 59.270 50.000 0.00 0.00 37.36 4.17
3490 6673 0.248458 CGTGTTGAACAGTGGTTGCC 60.248 55.000 0.00 0.00 37.36 4.52
3491 6674 0.102300 GTGTTGAACAGTGGTTGCCC 59.898 55.000 0.00 0.00 37.36 5.36
3492 6675 0.323816 TGTTGAACAGTGGTTGCCCA 60.324 50.000 0.00 0.00 37.36 5.36
3493 6676 1.039856 GTTGAACAGTGGTTGCCCAT 58.960 50.000 0.00 0.00 44.35 4.00
3494 6677 1.000274 GTTGAACAGTGGTTGCCCATC 60.000 52.381 0.00 0.00 44.35 3.51
3495 6678 0.888736 TGAACAGTGGTTGCCCATCG 60.889 55.000 0.00 0.00 44.35 3.84
3496 6679 0.889186 GAACAGTGGTTGCCCATCGT 60.889 55.000 0.00 0.00 44.35 3.73
3497 6680 0.467290 AACAGTGGTTGCCCATCGTT 60.467 50.000 0.00 0.00 44.35 3.85
3498 6681 1.172180 ACAGTGGTTGCCCATCGTTG 61.172 55.000 0.00 0.00 44.35 4.10
3499 6682 0.888736 CAGTGGTTGCCCATCGTTGA 60.889 55.000 0.00 0.00 44.35 3.18
3500 6683 0.179004 AGTGGTTGCCCATCGTTGAA 60.179 50.000 0.00 0.00 44.35 2.69
3501 6684 0.240945 GTGGTTGCCCATCGTTGAAG 59.759 55.000 0.00 0.00 44.35 3.02
3502 6685 0.179004 TGGTTGCCCATCGTTGAAGT 60.179 50.000 0.00 0.00 35.17 3.01
3503 6686 0.240945 GGTTGCCCATCGTTGAAGTG 59.759 55.000 0.00 0.00 0.00 3.16
3504 6687 1.234821 GTTGCCCATCGTTGAAGTGA 58.765 50.000 0.00 0.00 0.00 3.41
3505 6688 1.197721 GTTGCCCATCGTTGAAGTGAG 59.802 52.381 0.00 0.00 0.00 3.51
3506 6689 0.321564 TGCCCATCGTTGAAGTGAGG 60.322 55.000 0.00 0.00 0.00 3.86
3507 6690 0.321653 GCCCATCGTTGAAGTGAGGT 60.322 55.000 0.00 0.00 0.00 3.85
3508 6691 1.726853 CCCATCGTTGAAGTGAGGTC 58.273 55.000 0.00 0.00 0.00 3.85
3509 6692 1.350193 CCATCGTTGAAGTGAGGTCG 58.650 55.000 0.00 0.00 0.00 4.79
3510 6693 0.716108 CATCGTTGAAGTGAGGTCGC 59.284 55.000 0.00 0.00 0.00 5.19
3511 6694 0.389948 ATCGTTGAAGTGAGGTCGCC 60.390 55.000 0.00 0.00 0.00 5.54
3512 6695 2.372690 CGTTGAAGTGAGGTCGCCG 61.373 63.158 0.00 0.00 0.00 6.46
3513 6696 1.300697 GTTGAAGTGAGGTCGCCGT 60.301 57.895 0.00 0.00 0.00 5.68
3514 6697 1.006571 TTGAAGTGAGGTCGCCGTC 60.007 57.895 0.00 0.00 0.00 4.79
3515 6698 1.740332 TTGAAGTGAGGTCGCCGTCA 61.740 55.000 0.00 0.00 33.30 4.35
3516 6699 1.215647 GAAGTGAGGTCGCCGTCAT 59.784 57.895 0.00 0.00 37.75 3.06
3517 6700 0.389948 GAAGTGAGGTCGCCGTCATT 60.390 55.000 0.00 0.00 37.75 2.57
3518 6701 0.670546 AAGTGAGGTCGCCGTCATTG 60.671 55.000 0.00 0.00 37.75 2.82
3519 6702 1.374252 GTGAGGTCGCCGTCATTGT 60.374 57.895 0.00 0.00 37.75 2.71
3520 6703 1.080093 TGAGGTCGCCGTCATTGTC 60.080 57.895 0.00 0.00 30.87 3.18
3521 6704 2.126071 AGGTCGCCGTCATTGTCG 60.126 61.111 0.00 0.00 0.00 4.35
3522 6705 2.431942 GGTCGCCGTCATTGTCGT 60.432 61.111 2.82 0.00 0.00 4.34
3523 6706 2.726691 GGTCGCCGTCATTGTCGTG 61.727 63.158 2.82 0.00 0.00 4.35
3524 6707 2.431771 TCGCCGTCATTGTCGTGG 60.432 61.111 2.82 0.00 0.00 4.94
3525 6708 4.147322 CGCCGTCATTGTCGTGGC 62.147 66.667 2.82 2.69 42.29 5.01
3526 6709 4.147322 GCCGTCATTGTCGTGGCG 62.147 66.667 2.82 0.00 46.09 5.69
3527 6710 4.147322 CCGTCATTGTCGTGGCGC 62.147 66.667 0.00 0.00 45.24 6.53
3528 6711 3.410516 CGTCATTGTCGTGGCGCA 61.411 61.111 10.83 0.00 40.55 6.09
3529 6712 2.942879 GTCATTGTCGTGGCGCAA 59.057 55.556 10.83 0.00 0.00 4.85
3530 6713 1.281353 GTCATTGTCGTGGCGCAAA 59.719 52.632 10.83 0.00 0.00 3.68
3531 6714 0.317436 GTCATTGTCGTGGCGCAAAA 60.317 50.000 10.83 0.00 0.00 2.44
3532 6715 0.040514 TCATTGTCGTGGCGCAAAAG 60.041 50.000 10.83 0.00 0.00 2.27
3533 6716 1.003262 CATTGTCGTGGCGCAAAAGG 61.003 55.000 10.83 0.00 0.00 3.11
3534 6717 1.452145 ATTGTCGTGGCGCAAAAGGT 61.452 50.000 10.83 0.00 0.00 3.50
3535 6718 2.051345 GTCGTGGCGCAAAAGGTG 60.051 61.111 10.83 0.00 0.00 4.00
3536 6719 2.203084 TCGTGGCGCAAAAGGTGA 60.203 55.556 10.83 0.00 0.00 4.02
3537 6720 1.820056 TCGTGGCGCAAAAGGTGAA 60.820 52.632 10.83 0.00 0.00 3.18
3538 6721 1.064946 CGTGGCGCAAAAGGTGAAA 59.935 52.632 10.83 0.00 0.00 2.69
3539 6722 0.318614 CGTGGCGCAAAAGGTGAAAT 60.319 50.000 10.83 0.00 0.00 2.17
3540 6723 1.864565 GTGGCGCAAAAGGTGAAATT 58.135 45.000 10.83 0.00 0.00 1.82
3541 6724 2.209273 GTGGCGCAAAAGGTGAAATTT 58.791 42.857 10.83 0.00 0.00 1.82
3542 6725 2.611751 GTGGCGCAAAAGGTGAAATTTT 59.388 40.909 10.83 0.00 0.00 1.82
3543 6726 3.064682 GTGGCGCAAAAGGTGAAATTTTT 59.935 39.130 10.83 0.00 0.00 1.94
3566 6749 7.465353 TTTTGCTATCATTGTCATGGAAAGA 57.535 32.000 0.00 0.00 0.00 2.52
3567 6750 6.688637 TTGCTATCATTGTCATGGAAAGAG 57.311 37.500 0.00 0.00 0.00 2.85
3568 6751 5.128205 TGCTATCATTGTCATGGAAAGAGG 58.872 41.667 0.00 0.00 0.00 3.69
3569 6752 4.518211 GCTATCATTGTCATGGAAAGAGGG 59.482 45.833 0.00 0.00 0.00 4.30
3570 6753 4.868172 ATCATTGTCATGGAAAGAGGGA 57.132 40.909 0.00 0.00 0.00 4.20
3571 6754 4.226427 TCATTGTCATGGAAAGAGGGAG 57.774 45.455 0.00 0.00 0.00 4.30
3572 6755 3.845992 TCATTGTCATGGAAAGAGGGAGA 59.154 43.478 0.00 0.00 0.00 3.71
3573 6756 4.289410 TCATTGTCATGGAAAGAGGGAGAA 59.711 41.667 0.00 0.00 0.00 2.87
3574 6757 4.722526 TTGTCATGGAAAGAGGGAGAAA 57.277 40.909 0.00 0.00 0.00 2.52
3575 6758 4.934797 TGTCATGGAAAGAGGGAGAAAT 57.065 40.909 0.00 0.00 0.00 2.17
3576 6759 4.592942 TGTCATGGAAAGAGGGAGAAATG 58.407 43.478 0.00 0.00 0.00 2.32
3577 6760 3.379688 GTCATGGAAAGAGGGAGAAATGC 59.620 47.826 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.241506 TCACACCTTCAGAATGTTGAATTCC 59.758 40.000 2.27 0.00 36.55 3.01
2 3 5.829924 AGTCACACCTTCAGAATGTTGAATT 59.170 36.000 0.00 0.00 36.55 2.17
3 4 5.240183 CAGTCACACCTTCAGAATGTTGAAT 59.760 40.000 0.00 0.00 36.55 2.57
4 5 4.576053 CAGTCACACCTTCAGAATGTTGAA 59.424 41.667 0.00 0.00 37.40 2.69
5 6 4.129380 CAGTCACACCTTCAGAATGTTGA 58.871 43.478 0.00 0.00 37.40 3.18
6 7 3.251729 CCAGTCACACCTTCAGAATGTTG 59.748 47.826 0.00 0.00 37.40 3.33
7 8 3.480470 CCAGTCACACCTTCAGAATGTT 58.520 45.455 0.00 0.00 37.40 2.71
8 9 2.224621 CCCAGTCACACCTTCAGAATGT 60.225 50.000 0.00 0.00 37.40 2.71
9 10 2.430465 CCCAGTCACACCTTCAGAATG 58.570 52.381 0.00 0.00 37.54 2.67
10 11 1.352352 CCCCAGTCACACCTTCAGAAT 59.648 52.381 0.00 0.00 0.00 2.40
11 12 0.764890 CCCCAGTCACACCTTCAGAA 59.235 55.000 0.00 0.00 0.00 3.02
12 13 0.105194 TCCCCAGTCACACCTTCAGA 60.105 55.000 0.00 0.00 0.00 3.27
13 14 0.764890 TTCCCCAGTCACACCTTCAG 59.235 55.000 0.00 0.00 0.00 3.02
14 15 1.444933 ATTCCCCAGTCACACCTTCA 58.555 50.000 0.00 0.00 0.00 3.02
15 16 2.586648 AATTCCCCAGTCACACCTTC 57.413 50.000 0.00 0.00 0.00 3.46
16 17 3.328535 AAAATTCCCCAGTCACACCTT 57.671 42.857 0.00 0.00 0.00 3.50
17 18 3.328535 AAAAATTCCCCAGTCACACCT 57.671 42.857 0.00 0.00 0.00 4.00
37 38 5.520649 GTCTTTATTTTCGTGGGTGCAAAAA 59.479 36.000 0.00 0.00 0.00 1.94
38 39 5.044558 GTCTTTATTTTCGTGGGTGCAAAA 58.955 37.500 0.00 0.00 0.00 2.44
39 40 4.612943 GTCTTTATTTTCGTGGGTGCAAA 58.387 39.130 0.00 0.00 0.00 3.68
40 41 3.304123 CGTCTTTATTTTCGTGGGTGCAA 60.304 43.478 0.00 0.00 0.00 4.08
41 42 2.224549 CGTCTTTATTTTCGTGGGTGCA 59.775 45.455 0.00 0.00 0.00 4.57
42 43 2.224784 ACGTCTTTATTTTCGTGGGTGC 59.775 45.455 0.00 0.00 35.24 5.01
43 44 3.805823 CACGTCTTTATTTTCGTGGGTG 58.194 45.455 8.36 0.00 46.12 4.61
48 49 4.212636 CCCTCAACACGTCTTTATTTTCGT 59.787 41.667 0.00 0.00 36.99 3.85
49 50 4.378046 CCCCTCAACACGTCTTTATTTTCG 60.378 45.833 0.00 0.00 0.00 3.46
50 51 4.615223 GCCCCTCAACACGTCTTTATTTTC 60.615 45.833 0.00 0.00 0.00 2.29
51 52 3.254903 GCCCCTCAACACGTCTTTATTTT 59.745 43.478 0.00 0.00 0.00 1.82
52 53 2.817844 GCCCCTCAACACGTCTTTATTT 59.182 45.455 0.00 0.00 0.00 1.40
53 54 2.433436 GCCCCTCAACACGTCTTTATT 58.567 47.619 0.00 0.00 0.00 1.40
54 55 1.674817 CGCCCCTCAACACGTCTTTAT 60.675 52.381 0.00 0.00 0.00 1.40
55 56 0.320073 CGCCCCTCAACACGTCTTTA 60.320 55.000 0.00 0.00 0.00 1.85
56 57 1.597027 CGCCCCTCAACACGTCTTT 60.597 57.895 0.00 0.00 0.00 2.52
57 58 2.030562 CGCCCCTCAACACGTCTT 59.969 61.111 0.00 0.00 0.00 3.01
58 59 4.003788 CCGCCCCTCAACACGTCT 62.004 66.667 0.00 0.00 0.00 4.18
59 60 4.309950 ACCGCCCCTCAACACGTC 62.310 66.667 0.00 0.00 0.00 4.34
60 61 4.619227 CACCGCCCCTCAACACGT 62.619 66.667 0.00 0.00 0.00 4.49
74 75 4.479993 AGCATCTCCAGCCGCACC 62.480 66.667 0.00 0.00 0.00 5.01
75 76 2.894387 GAGCATCTCCAGCCGCAC 60.894 66.667 0.00 0.00 0.00 5.34
84 85 2.131183 GTTGCATCGTAGGAGCATCTC 58.869 52.381 9.35 0.00 38.19 2.75
85 86 1.759445 AGTTGCATCGTAGGAGCATCT 59.241 47.619 9.35 10.47 38.19 2.90
86 87 2.231215 AGTTGCATCGTAGGAGCATC 57.769 50.000 9.35 8.93 38.19 3.91
87 88 2.283298 CAAGTTGCATCGTAGGAGCAT 58.717 47.619 9.35 0.00 38.19 3.79
88 89 1.725641 CAAGTTGCATCGTAGGAGCA 58.274 50.000 0.00 5.74 36.32 4.26
89 90 0.375106 GCAAGTTGCATCGTAGGAGC 59.625 55.000 22.90 0.00 44.26 4.70
90 91 0.647410 CGCAAGTTGCATCGTAGGAG 59.353 55.000 26.56 4.04 45.36 3.69
91 92 1.358725 GCGCAAGTTGCATCGTAGGA 61.359 55.000 26.56 0.00 45.36 2.94
92 93 1.060937 GCGCAAGTTGCATCGTAGG 59.939 57.895 26.56 10.13 45.36 3.18
93 94 1.060937 GGCGCAAGTTGCATCGTAG 59.939 57.895 26.56 10.83 45.36 3.51
94 95 1.358725 GAGGCGCAAGTTGCATCGTA 61.359 55.000 26.56 0.00 45.36 3.43
95 96 2.669569 AGGCGCAAGTTGCATCGT 60.670 55.556 26.56 15.77 45.36 3.73
96 97 2.099062 GAGGCGCAAGTTGCATCG 59.901 61.111 26.56 12.26 45.36 3.84
97 98 1.589716 AAGGAGGCGCAAGTTGCATC 61.590 55.000 26.56 19.37 45.36 3.91
133 134 2.165845 GGTACAAGGACACTATCGTGCT 59.834 50.000 0.00 0.00 45.10 4.40
140 141 0.615544 CCCCGGGTACAAGGACACTA 60.616 60.000 21.85 0.00 0.00 2.74
141 142 1.916777 CCCCGGGTACAAGGACACT 60.917 63.158 21.85 0.00 0.00 3.55
142 143 2.666812 CCCCGGGTACAAGGACAC 59.333 66.667 21.85 0.00 0.00 3.67
147 148 2.192175 GATGCCCCCGGGTACAAG 59.808 66.667 21.85 2.65 37.65 3.16
165 166 4.971125 GTATGCGCCCCGAGCTCC 62.971 72.222 8.47 0.00 40.39 4.70
166 167 4.971125 GGTATGCGCCCCGAGCTC 62.971 72.222 4.18 2.73 40.39 4.09
178 179 4.816385 AGTAAACTCATCAATGGCGGTATG 59.184 41.667 0.00 0.00 0.00 2.39
179 180 4.816385 CAGTAAACTCATCAATGGCGGTAT 59.184 41.667 0.00 0.00 0.00 2.73
180 181 4.188462 CAGTAAACTCATCAATGGCGGTA 58.812 43.478 0.00 0.00 0.00 4.02
181 182 3.009723 CAGTAAACTCATCAATGGCGGT 58.990 45.455 0.00 0.00 0.00 5.68
182 183 2.223340 GCAGTAAACTCATCAATGGCGG 60.223 50.000 0.00 0.00 0.00 6.13
185 186 2.223340 GGCGCAGTAAACTCATCAATGG 60.223 50.000 10.83 0.00 0.00 3.16
187 188 1.665679 CGGCGCAGTAAACTCATCAAT 59.334 47.619 10.83 0.00 0.00 2.57
188 189 1.075542 CGGCGCAGTAAACTCATCAA 58.924 50.000 10.83 0.00 0.00 2.57
189 190 1.358725 GCGGCGCAGTAAACTCATCA 61.359 55.000 29.21 0.00 0.00 3.07
191 192 1.079127 AGCGGCGCAGTAAACTCAT 60.079 52.632 35.02 5.79 0.00 2.90
192 193 2.027073 CAGCGGCGCAGTAAACTCA 61.027 57.895 35.02 0.00 0.00 3.41
193 194 1.956620 GACAGCGGCGCAGTAAACTC 61.957 60.000 35.02 15.71 0.00 3.01
195 196 2.474712 GACAGCGGCGCAGTAAAC 59.525 61.111 35.02 16.48 0.00 2.01
196 197 3.109547 CGACAGCGGCGCAGTAAA 61.110 61.111 35.02 0.00 0.00 2.01
229 1345 2.509336 ATCTTTCTCACCCGCGCG 60.509 61.111 25.67 25.67 0.00 6.86
237 2776 1.515954 GGCCGACCGATCTTTCTCA 59.484 57.895 0.00 0.00 0.00 3.27
263 2802 2.364842 ATCTCTGCCCGTCTGCCT 60.365 61.111 0.00 0.00 0.00 4.75
296 2835 3.639541 AACAGAGAGAGCAGCGCCG 62.640 63.158 2.29 0.00 0.00 6.46
306 2849 3.166421 CGCAGCAGCAACAGAGAG 58.834 61.111 0.82 0.00 42.27 3.20
327 2870 0.462759 CAGTGCCCACTAGCTTAGCC 60.463 60.000 0.00 0.00 40.20 3.93
329 2872 1.195115 TCCAGTGCCCACTAGCTTAG 58.805 55.000 0.00 0.00 40.20 2.18
378 2921 1.179814 AGTCGCCGATCCAGGGATAC 61.180 60.000 0.00 0.00 34.60 2.24
403 2946 4.160814 TGCGATTGTACCACCACTACTATT 59.839 41.667 0.00 0.00 0.00 1.73
404 2947 3.702548 TGCGATTGTACCACCACTACTAT 59.297 43.478 0.00 0.00 0.00 2.12
405 2948 3.090790 TGCGATTGTACCACCACTACTA 58.909 45.455 0.00 0.00 0.00 1.82
406 2949 1.897133 TGCGATTGTACCACCACTACT 59.103 47.619 0.00 0.00 0.00 2.57
407 2950 1.997606 GTGCGATTGTACCACCACTAC 59.002 52.381 0.00 0.00 0.00 2.73
408 2951 1.897133 AGTGCGATTGTACCACCACTA 59.103 47.619 0.00 0.00 32.32 2.74
409 2952 0.685097 AGTGCGATTGTACCACCACT 59.315 50.000 0.00 0.00 0.00 4.00
410 2953 0.796312 CAGTGCGATTGTACCACCAC 59.204 55.000 0.00 0.00 0.00 4.16
411 2954 0.394938 ACAGTGCGATTGTACCACCA 59.605 50.000 0.00 0.00 0.00 4.17
412 2955 1.076332 GACAGTGCGATTGTACCACC 58.924 55.000 0.00 0.00 0.00 4.61
413 2956 1.726791 CAGACAGTGCGATTGTACCAC 59.273 52.381 0.00 0.00 0.00 4.16
414 2957 1.337728 CCAGACAGTGCGATTGTACCA 60.338 52.381 0.00 0.00 0.00 3.25
491 3034 4.705519 CCGCGGCTTGCCAACTTG 62.706 66.667 14.67 0.00 42.08 3.16
503 3046 1.451387 ATAACAGGAAAGCCCGCGG 60.451 57.895 21.04 21.04 40.87 6.46
560 3103 1.338655 CACTTGGTGTTTTTACCCCGG 59.661 52.381 0.00 0.00 40.09 5.73
561 3104 1.269361 GCACTTGGTGTTTTTACCCCG 60.269 52.381 0.00 0.00 40.09 5.73
562 3105 1.069513 GGCACTTGGTGTTTTTACCCC 59.930 52.381 0.00 0.00 40.09 4.95
563 3106 1.757699 TGGCACTTGGTGTTTTTACCC 59.242 47.619 0.00 0.00 40.09 3.69
564 3107 2.482316 GGTGGCACTTGGTGTTTTTACC 60.482 50.000 18.45 0.00 41.24 2.85
565 3108 2.482316 GGGTGGCACTTGGTGTTTTTAC 60.482 50.000 18.45 0.00 35.75 2.01
566 3109 1.757699 GGGTGGCACTTGGTGTTTTTA 59.242 47.619 18.45 0.00 35.75 1.52
567 3110 0.539518 GGGTGGCACTTGGTGTTTTT 59.460 50.000 18.45 0.00 35.75 1.94
646 3199 2.804572 CGCTATAGGAACAGTGCTGCAT 60.805 50.000 5.27 0.00 0.00 3.96
738 3307 4.803426 GGTCTGGGCACGCTCGAG 62.803 72.222 8.45 8.45 0.00 4.04
739 3308 3.931190 TAGGTCTGGGCACGCTCGA 62.931 63.158 0.00 0.00 0.00 4.04
743 3312 2.125512 CAGTAGGTCTGGGCACGC 60.126 66.667 0.00 0.00 40.23 5.34
791 3370 1.226717 CTCTCGCCCGTGTAGCTTC 60.227 63.158 0.00 0.00 0.00 3.86
794 3373 2.102553 GACTCTCGCCCGTGTAGC 59.897 66.667 0.00 0.00 0.00 3.58
820 3399 1.267806 TCGTGTGTAGAAGGACGGTTC 59.732 52.381 0.00 0.00 32.68 3.62
2628 5296 1.329292 CTGTTGCAAAGGACGAAACGA 59.671 47.619 0.00 0.00 0.00 3.85
2643 5311 1.594518 CGCGCGATTTTATCCCTGTTG 60.595 52.381 28.94 0.00 0.00 3.33
2741 5409 1.734477 CGTCCGGCATCATCGATCC 60.734 63.158 0.00 0.00 0.00 3.36
2754 5422 2.486951 ACCGACTAATCAATCGTCCG 57.513 50.000 0.00 0.00 36.60 4.79
2771 5439 1.332997 AGAGCTGCGTACGTACATACC 59.667 52.381 24.50 10.29 0.00 2.73
2772 5440 2.601741 GGAGAGCTGCGTACGTACATAC 60.602 54.545 24.50 13.79 0.00 2.39
2773 5441 1.600957 GGAGAGCTGCGTACGTACATA 59.399 52.381 24.50 11.89 0.00 2.29
2774 5442 0.381089 GGAGAGCTGCGTACGTACAT 59.619 55.000 24.50 0.83 0.00 2.29
2775 5443 0.956902 TGGAGAGCTGCGTACGTACA 60.957 55.000 24.50 6.26 0.00 2.90
2868 5536 1.084370 GCGCGTAACTGAAGCCTGAT 61.084 55.000 8.43 0.00 0.00 2.90
2892 5560 2.094597 TCCGTTATCCGTACCACACAAG 60.095 50.000 0.00 0.00 33.66 3.16
2895 5563 2.652941 TTCCGTTATCCGTACCACAC 57.347 50.000 0.00 0.00 33.66 3.82
2924 5592 3.435327 TCATATCAAGTGCACAACGGTTC 59.565 43.478 21.04 0.00 0.00 3.62
3099 6280 7.147707 GGAGGGAGTACAAGTTATTACTCACAT 60.148 40.741 20.50 11.15 46.95 3.21
3108 6289 3.029570 GGACGGAGGGAGTACAAGTTAT 58.970 50.000 0.00 0.00 0.00 1.89
3118 6299 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3119 6300 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3120 6301 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
3121 6302 3.270877 CTCACTTATTTTGGGACGGAGG 58.729 50.000 0.00 0.00 0.00 4.30
3122 6303 2.678336 GCTCACTTATTTTGGGACGGAG 59.322 50.000 0.00 0.00 0.00 4.63
3124 6305 2.711542 AGCTCACTTATTTTGGGACGG 58.288 47.619 0.00 0.00 0.00 4.79
3125 6306 3.751175 TCAAGCTCACTTATTTTGGGACG 59.249 43.478 0.00 0.00 33.74 4.79
3126 6307 5.003804 TCTCAAGCTCACTTATTTTGGGAC 58.996 41.667 0.00 0.00 33.74 4.46
3127 6308 5.003804 GTCTCAAGCTCACTTATTTTGGGA 58.996 41.667 0.00 0.00 33.74 4.37
3128 6309 4.761739 TGTCTCAAGCTCACTTATTTTGGG 59.238 41.667 0.00 0.00 33.74 4.12
3129 6310 5.471456 AGTGTCTCAAGCTCACTTATTTTGG 59.529 40.000 0.00 0.00 39.00 3.28
3130 6311 6.551385 AGTGTCTCAAGCTCACTTATTTTG 57.449 37.500 0.00 0.00 39.00 2.44
3137 6318 6.291377 TCAAAATAAGTGTCTCAAGCTCACT 58.709 36.000 0.00 0.00 43.04 3.41
3138 6319 6.545504 TCAAAATAAGTGTCTCAAGCTCAC 57.454 37.500 0.00 0.00 0.00 3.51
3139 6320 7.066887 TGTTTCAAAATAAGTGTCTCAAGCTCA 59.933 33.333 0.00 0.00 0.00 4.26
3140 6321 7.417612 TGTTTCAAAATAAGTGTCTCAAGCTC 58.582 34.615 0.00 0.00 0.00 4.09
3141 6322 7.333528 TGTTTCAAAATAAGTGTCTCAAGCT 57.666 32.000 0.00 0.00 0.00 3.74
3142 6323 7.985634 TTGTTTCAAAATAAGTGTCTCAAGC 57.014 32.000 0.00 0.00 0.00 4.01
3143 6324 9.023967 CCTTTGTTTCAAAATAAGTGTCTCAAG 57.976 33.333 0.00 0.00 0.00 3.02
3144 6325 7.978975 CCCTTTGTTTCAAAATAAGTGTCTCAA 59.021 33.333 0.00 0.00 0.00 3.02
3145 6326 7.340743 TCCCTTTGTTTCAAAATAAGTGTCTCA 59.659 33.333 0.00 0.00 0.00 3.27
3146 6327 7.712797 TCCCTTTGTTTCAAAATAAGTGTCTC 58.287 34.615 0.00 0.00 0.00 3.36
3147 6328 7.654022 TCCCTTTGTTTCAAAATAAGTGTCT 57.346 32.000 0.00 0.00 0.00 3.41
3148 6329 6.420903 GCTCCCTTTGTTTCAAAATAAGTGTC 59.579 38.462 0.00 0.00 0.00 3.67
3149 6330 6.127196 TGCTCCCTTTGTTTCAAAATAAGTGT 60.127 34.615 0.00 0.00 0.00 3.55
3150 6331 6.279882 TGCTCCCTTTGTTTCAAAATAAGTG 58.720 36.000 0.00 0.00 0.00 3.16
3151 6332 6.478512 TGCTCCCTTTGTTTCAAAATAAGT 57.521 33.333 0.00 0.00 0.00 2.24
3154 6335 9.474313 ACTATATGCTCCCTTTGTTTCAAAATA 57.526 29.630 0.00 0.00 0.00 1.40
3155 6336 8.253113 CACTATATGCTCCCTTTGTTTCAAAAT 58.747 33.333 0.00 0.00 0.00 1.82
3156 6337 7.232534 ACACTATATGCTCCCTTTGTTTCAAAA 59.767 33.333 0.00 0.00 0.00 2.44
3157 6338 6.719370 ACACTATATGCTCCCTTTGTTTCAAA 59.281 34.615 0.00 0.00 0.00 2.69
3158 6339 6.245408 ACACTATATGCTCCCTTTGTTTCAA 58.755 36.000 0.00 0.00 0.00 2.69
3159 6340 5.815581 ACACTATATGCTCCCTTTGTTTCA 58.184 37.500 0.00 0.00 0.00 2.69
3160 6341 6.759497 AACACTATATGCTCCCTTTGTTTC 57.241 37.500 0.00 0.00 0.00 2.78
3161 6342 8.644374 TTTAACACTATATGCTCCCTTTGTTT 57.356 30.769 0.00 0.00 0.00 2.83
3162 6343 8.644374 TTTTAACACTATATGCTCCCTTTGTT 57.356 30.769 0.00 0.00 0.00 2.83
3163 6344 8.644374 TTTTTAACACTATATGCTCCCTTTGT 57.356 30.769 0.00 0.00 0.00 2.83
3193 6374 3.010027 TGACTTTCATGGTATTCTGGGCA 59.990 43.478 0.00 0.00 0.00 5.36
3194 6375 3.620488 TGACTTTCATGGTATTCTGGGC 58.380 45.455 0.00 0.00 0.00 5.36
3224 6405 6.202937 TGTTGTACTTGCATAAAAGGTTTCG 58.797 36.000 0.00 0.00 0.00 3.46
3325 6508 2.743938 CTCTCGGGTGTATATGCACAC 58.256 52.381 23.01 19.49 46.58 3.82
3326 6509 1.068588 GCTCTCGGGTGTATATGCACA 59.931 52.381 23.01 4.53 40.89 4.57
3350 6533 0.600255 CGTCAGTTGAAAGCGGAGGT 60.600 55.000 0.00 0.00 44.60 3.85
3351 6534 1.291877 CCGTCAGTTGAAAGCGGAGG 61.292 60.000 4.22 0.00 44.57 4.30
3353 6536 1.301401 CCCGTCAGTTGAAAGCGGA 60.301 57.895 10.23 0.00 44.57 5.54
3354 6537 1.566018 GACCCGTCAGTTGAAAGCGG 61.566 60.000 3.45 3.45 41.82 5.52
3356 6539 3.000815 TGACCCGTCAGTTGAAAGC 57.999 52.632 0.00 0.00 34.14 3.51
3365 6548 1.525077 GCACAAACCTGACCCGTCA 60.525 57.895 0.00 0.00 38.06 4.35
3366 6549 1.525077 TGCACAAACCTGACCCGTC 60.525 57.895 0.00 0.00 0.00 4.79
3367 6550 1.822186 GTGCACAAACCTGACCCGT 60.822 57.895 13.17 0.00 0.00 5.28
3368 6551 1.101049 AAGTGCACAAACCTGACCCG 61.101 55.000 21.04 0.00 0.00 5.28
3369 6552 0.668535 GAAGTGCACAAACCTGACCC 59.331 55.000 21.04 0.00 0.00 4.46
3370 6553 1.334869 CTGAAGTGCACAAACCTGACC 59.665 52.381 21.04 0.00 0.00 4.02
3371 6554 1.268743 GCTGAAGTGCACAAACCTGAC 60.269 52.381 21.04 1.55 0.00 3.51
3372 6555 1.024271 GCTGAAGTGCACAAACCTGA 58.976 50.000 21.04 0.00 0.00 3.86
3373 6556 1.027357 AGCTGAAGTGCACAAACCTG 58.973 50.000 21.04 9.50 34.99 4.00
3374 6557 1.767759 AAGCTGAAGTGCACAAACCT 58.232 45.000 21.04 5.44 34.99 3.50
3375 6558 3.372060 GTTAAGCTGAAGTGCACAAACC 58.628 45.455 21.04 5.26 34.99 3.27
3376 6559 3.035942 CGTTAAGCTGAAGTGCACAAAC 58.964 45.455 21.04 10.13 34.99 2.93
3377 6560 2.540769 GCGTTAAGCTGAAGTGCACAAA 60.541 45.455 21.04 2.57 44.04 2.83
3378 6561 1.002900 GCGTTAAGCTGAAGTGCACAA 60.003 47.619 21.04 2.97 44.04 3.33
3379 6562 0.586319 GCGTTAAGCTGAAGTGCACA 59.414 50.000 21.04 0.00 44.04 4.57
3380 6563 3.368046 GCGTTAAGCTGAAGTGCAC 57.632 52.632 9.40 9.40 44.04 4.57
3391 6574 3.181485 CCCTTAGAGTGGAGAGCGTTAAG 60.181 52.174 0.00 0.00 0.00 1.85
3392 6575 2.758979 CCCTTAGAGTGGAGAGCGTTAA 59.241 50.000 0.00 0.00 0.00 2.01
3393 6576 2.376109 CCCTTAGAGTGGAGAGCGTTA 58.624 52.381 0.00 0.00 0.00 3.18
3394 6577 1.187087 CCCTTAGAGTGGAGAGCGTT 58.813 55.000 0.00 0.00 0.00 4.84
3395 6578 0.684805 CCCCTTAGAGTGGAGAGCGT 60.685 60.000 0.00 0.00 0.00 5.07
3396 6579 0.395862 TCCCCTTAGAGTGGAGAGCG 60.396 60.000 0.00 0.00 0.00 5.03
3397 6580 1.867363 TTCCCCTTAGAGTGGAGAGC 58.133 55.000 0.00 0.00 0.00 4.09
3398 6581 5.012561 CCATATTTCCCCTTAGAGTGGAGAG 59.987 48.000 0.00 0.00 0.00 3.20
3399 6582 4.907875 CCATATTTCCCCTTAGAGTGGAGA 59.092 45.833 0.00 0.00 0.00 3.71
3400 6583 4.042187 CCCATATTTCCCCTTAGAGTGGAG 59.958 50.000 0.00 0.00 0.00 3.86
3401 6584 3.980698 CCCATATTTCCCCTTAGAGTGGA 59.019 47.826 0.00 0.00 0.00 4.02
3402 6585 3.980698 TCCCATATTTCCCCTTAGAGTGG 59.019 47.826 0.00 0.00 0.00 4.00
3403 6586 4.412199 TGTCCCATATTTCCCCTTAGAGTG 59.588 45.833 0.00 0.00 0.00 3.51
3404 6587 4.641868 TGTCCCATATTTCCCCTTAGAGT 58.358 43.478 0.00 0.00 0.00 3.24
3405 6588 5.850046 ATGTCCCATATTTCCCCTTAGAG 57.150 43.478 0.00 0.00 0.00 2.43
3406 6589 7.905144 AATATGTCCCATATTTCCCCTTAGA 57.095 36.000 4.11 0.00 0.00 2.10
3407 6590 8.956446 AAAATATGTCCCATATTTCCCCTTAG 57.044 34.615 17.79 0.00 34.25 2.18
3409 6592 9.736819 TTTAAAATATGTCCCATATTTCCCCTT 57.263 29.630 17.79 8.47 34.25 3.95
3410 6593 9.912461 ATTTAAAATATGTCCCATATTTCCCCT 57.088 29.630 17.79 8.74 34.25 4.79
3411 6594 9.942850 CATTTAAAATATGTCCCATATTTCCCC 57.057 33.333 17.79 0.00 34.25 4.81
3412 6595 9.942850 CCATTTAAAATATGTCCCATATTTCCC 57.057 33.333 17.79 0.00 34.25 3.97
3430 6613 9.502035 TCCTTCTAGGAGTAGAATCCATTTAAA 57.498 33.333 0.00 0.00 43.07 1.52
3446 6629 7.569599 ACATTTCTTTTACCTCCTTCTAGGA 57.430 36.000 0.00 0.00 43.43 2.94
3447 6630 6.535508 CGACATTTCTTTTACCTCCTTCTAGG 59.464 42.308 0.00 0.00 42.82 3.02
3448 6631 7.063544 CACGACATTTCTTTTACCTCCTTCTAG 59.936 40.741 0.00 0.00 0.00 2.43
3449 6632 6.872020 CACGACATTTCTTTTACCTCCTTCTA 59.128 38.462 0.00 0.00 0.00 2.10
3450 6633 5.701290 CACGACATTTCTTTTACCTCCTTCT 59.299 40.000 0.00 0.00 0.00 2.85
3451 6634 5.469084 ACACGACATTTCTTTTACCTCCTTC 59.531 40.000 0.00 0.00 0.00 3.46
3452 6635 5.374071 ACACGACATTTCTTTTACCTCCTT 58.626 37.500 0.00 0.00 0.00 3.36
3453 6636 4.969484 ACACGACATTTCTTTTACCTCCT 58.031 39.130 0.00 0.00 0.00 3.69
3454 6637 5.237779 TCAACACGACATTTCTTTTACCTCC 59.762 40.000 0.00 0.00 0.00 4.30
3455 6638 6.295039 TCAACACGACATTTCTTTTACCTC 57.705 37.500 0.00 0.00 0.00 3.85
3456 6639 6.094325 TGTTCAACACGACATTTCTTTTACCT 59.906 34.615 0.00 0.00 0.00 3.08
3457 6640 6.259638 TGTTCAACACGACATTTCTTTTACC 58.740 36.000 0.00 0.00 0.00 2.85
3458 6641 6.964934 ACTGTTCAACACGACATTTCTTTTAC 59.035 34.615 0.00 0.00 0.00 2.01
3459 6642 6.964370 CACTGTTCAACACGACATTTCTTTTA 59.036 34.615 0.00 0.00 0.00 1.52
3460 6643 5.799936 CACTGTTCAACACGACATTTCTTTT 59.200 36.000 0.00 0.00 0.00 2.27
3461 6644 5.331902 CACTGTTCAACACGACATTTCTTT 58.668 37.500 0.00 0.00 0.00 2.52
3462 6645 4.201910 CCACTGTTCAACACGACATTTCTT 60.202 41.667 0.00 0.00 0.00 2.52
3463 6646 3.312421 CCACTGTTCAACACGACATTTCT 59.688 43.478 0.00 0.00 0.00 2.52
3464 6647 3.064820 ACCACTGTTCAACACGACATTTC 59.935 43.478 0.00 0.00 0.00 2.17
3465 6648 3.013921 ACCACTGTTCAACACGACATTT 58.986 40.909 0.00 0.00 0.00 2.32
3466 6649 2.639065 ACCACTGTTCAACACGACATT 58.361 42.857 0.00 0.00 0.00 2.71
3467 6650 2.325583 ACCACTGTTCAACACGACAT 57.674 45.000 0.00 0.00 0.00 3.06
3468 6651 1.735018 CAACCACTGTTCAACACGACA 59.265 47.619 0.00 0.00 30.42 4.35
3469 6652 1.531058 GCAACCACTGTTCAACACGAC 60.531 52.381 0.00 0.00 30.42 4.34
3470 6653 0.730265 GCAACCACTGTTCAACACGA 59.270 50.000 0.00 0.00 30.42 4.35
3471 6654 0.248458 GGCAACCACTGTTCAACACG 60.248 55.000 0.00 0.00 30.42 4.49
3472 6655 3.641031 GGCAACCACTGTTCAACAC 57.359 52.632 0.00 0.00 30.42 3.32
3485 6668 1.197721 CTCACTTCAACGATGGGCAAC 59.802 52.381 0.00 0.00 0.00 4.17
3486 6669 1.522668 CTCACTTCAACGATGGGCAA 58.477 50.000 0.00 0.00 0.00 4.52
3487 6670 0.321564 CCTCACTTCAACGATGGGCA 60.322 55.000 0.00 0.00 0.00 5.36
3488 6671 0.321653 ACCTCACTTCAACGATGGGC 60.322 55.000 0.00 0.00 0.00 5.36
3489 6672 1.726853 GACCTCACTTCAACGATGGG 58.273 55.000 0.00 0.00 0.00 4.00
3490 6673 1.350193 CGACCTCACTTCAACGATGG 58.650 55.000 0.00 0.00 0.00 3.51
3491 6674 0.716108 GCGACCTCACTTCAACGATG 59.284 55.000 0.00 0.00 0.00 3.84
3492 6675 0.389948 GGCGACCTCACTTCAACGAT 60.390 55.000 0.00 0.00 0.00 3.73
3493 6676 1.006571 GGCGACCTCACTTCAACGA 60.007 57.895 0.00 0.00 0.00 3.85
3494 6677 2.372690 CGGCGACCTCACTTCAACG 61.373 63.158 0.00 0.00 0.00 4.10
3495 6678 1.282930 GACGGCGACCTCACTTCAAC 61.283 60.000 16.62 0.00 0.00 3.18
3496 6679 1.006571 GACGGCGACCTCACTTCAA 60.007 57.895 16.62 0.00 0.00 2.69
3497 6680 1.532604 ATGACGGCGACCTCACTTCA 61.533 55.000 16.62 4.13 0.00 3.02
3498 6681 0.389948 AATGACGGCGACCTCACTTC 60.390 55.000 16.62 0.00 0.00 3.01
3499 6682 0.670546 CAATGACGGCGACCTCACTT 60.671 55.000 16.62 1.21 0.00 3.16
3500 6683 1.079819 CAATGACGGCGACCTCACT 60.080 57.895 16.62 0.00 0.00 3.41
3501 6684 1.352156 GACAATGACGGCGACCTCAC 61.352 60.000 16.62 0.00 0.00 3.51
3502 6685 1.080093 GACAATGACGGCGACCTCA 60.080 57.895 16.62 7.68 0.00 3.86
3503 6686 2.158959 CGACAATGACGGCGACCTC 61.159 63.158 16.62 0.27 0.00 3.85
3504 6687 2.126071 CGACAATGACGGCGACCT 60.126 61.111 16.62 0.00 0.00 3.85
3505 6688 2.431942 ACGACAATGACGGCGACC 60.432 61.111 16.62 5.38 34.93 4.79
3506 6689 2.726691 CCACGACAATGACGGCGAC 61.727 63.158 16.62 8.59 34.93 5.19
3507 6690 2.431771 CCACGACAATGACGGCGA 60.432 61.111 16.62 0.00 34.93 5.54
3508 6691 4.147322 GCCACGACAATGACGGCG 62.147 66.667 4.80 4.80 32.14 6.46
3509 6692 4.147322 CGCCACGACAATGACGGC 62.147 66.667 10.02 3.46 39.45 5.68
3510 6693 4.147322 GCGCCACGACAATGACGG 62.147 66.667 10.02 0.00 34.93 4.79
3511 6694 2.436997 TTTGCGCCACGACAATGACG 62.437 55.000 4.18 3.29 0.00 4.35
3512 6695 0.317436 TTTTGCGCCACGACAATGAC 60.317 50.000 4.18 0.00 0.00 3.06
3513 6696 0.040514 CTTTTGCGCCACGACAATGA 60.041 50.000 4.18 0.00 0.00 2.57
3514 6697 1.003262 CCTTTTGCGCCACGACAATG 61.003 55.000 4.18 0.00 0.00 2.82
3515 6698 1.285641 CCTTTTGCGCCACGACAAT 59.714 52.632 4.18 0.00 0.00 2.71
3516 6699 2.115911 ACCTTTTGCGCCACGACAA 61.116 52.632 4.18 0.00 0.00 3.18
3517 6700 2.515057 ACCTTTTGCGCCACGACA 60.515 55.556 4.18 0.00 0.00 4.35
3518 6701 2.051345 CACCTTTTGCGCCACGAC 60.051 61.111 4.18 0.00 0.00 4.34
3519 6702 1.377366 TTTCACCTTTTGCGCCACGA 61.377 50.000 4.18 0.00 0.00 4.35
3520 6703 0.318614 ATTTCACCTTTTGCGCCACG 60.319 50.000 4.18 0.00 0.00 4.94
3521 6704 1.864565 AATTTCACCTTTTGCGCCAC 58.135 45.000 4.18 0.00 0.00 5.01
3522 6705 2.611225 AAATTTCACCTTTTGCGCCA 57.389 40.000 4.18 0.00 0.00 5.69
3523 6706 3.961477 AAAAATTTCACCTTTTGCGCC 57.039 38.095 4.18 0.00 0.00 6.53
3541 6724 7.894708 TCTTTCCATGACAATGATAGCAAAAA 58.105 30.769 0.00 0.00 35.67 1.94
3542 6725 7.363181 CCTCTTTCCATGACAATGATAGCAAAA 60.363 37.037 0.00 0.00 35.67 2.44
3543 6726 6.095860 CCTCTTTCCATGACAATGATAGCAAA 59.904 38.462 0.00 0.00 35.67 3.68
3544 6727 5.591472 CCTCTTTCCATGACAATGATAGCAA 59.409 40.000 0.00 0.00 35.67 3.91
3545 6728 5.128205 CCTCTTTCCATGACAATGATAGCA 58.872 41.667 0.00 0.00 35.67 3.49
3546 6729 4.518211 CCCTCTTTCCATGACAATGATAGC 59.482 45.833 0.00 0.00 35.67 2.97
3547 6730 5.933617 TCCCTCTTTCCATGACAATGATAG 58.066 41.667 0.00 0.00 35.67 2.08
3548 6731 5.667172 TCTCCCTCTTTCCATGACAATGATA 59.333 40.000 0.00 0.00 35.67 2.15
3549 6732 4.476113 TCTCCCTCTTTCCATGACAATGAT 59.524 41.667 0.00 0.00 35.67 2.45
3550 6733 3.845992 TCTCCCTCTTTCCATGACAATGA 59.154 43.478 0.00 0.00 35.67 2.57
3551 6734 4.226427 TCTCCCTCTTTCCATGACAATG 57.774 45.455 0.00 0.00 0.00 2.82
3552 6735 4.934797 TTCTCCCTCTTTCCATGACAAT 57.065 40.909 0.00 0.00 0.00 2.71
3553 6736 4.722526 TTTCTCCCTCTTTCCATGACAA 57.277 40.909 0.00 0.00 0.00 3.18
3554 6737 4.592942 CATTTCTCCCTCTTTCCATGACA 58.407 43.478 0.00 0.00 0.00 3.58
3555 6738 3.379688 GCATTTCTCCCTCTTTCCATGAC 59.620 47.826 0.00 0.00 0.00 3.06
3556 6739 3.624777 GCATTTCTCCCTCTTTCCATGA 58.375 45.455 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.