Multiple sequence alignment - TraesCS3A01G371000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G371000 chr3A 100.000 4675 0 0 1 4675 621317167 621321841 0.000000e+00 8634.0
1 TraesCS3A01G371000 chr3A 85.836 353 34 11 344 691 587584732 587585073 1.240000e-95 361.0
2 TraesCS3A01G371000 chr3A 94.366 142 5 3 636 776 621317655 621317794 1.020000e-51 215.0
3 TraesCS3A01G371000 chr3D 94.639 3917 141 26 790 4672 477900686 477904567 0.000000e+00 6006.0
4 TraesCS3A01G371000 chr3D 85.645 411 53 6 371 776 324763750 324763341 1.200000e-115 427.0
5 TraesCS3A01G371000 chr3D 90.508 295 25 3 344 637 255424678 255424386 2.040000e-103 387.0
6 TraesCS3A01G371000 chr3D 85.816 141 19 1 636 775 324763632 324763492 1.050000e-31 148.0
7 TraesCS3A01G371000 chr3D 85.612 139 17 3 636 773 536147388 536147524 4.880000e-30 143.0
8 TraesCS3A01G371000 chr3B 93.691 1601 67 21 793 2374 637082066 637083651 0.000000e+00 2366.0
9 TraesCS3A01G371000 chr3B 95.890 1460 42 9 2373 3829 637083936 637085380 0.000000e+00 2348.0
10 TraesCS3A01G371000 chr3B 88.728 346 15 8 4071 4406 637085780 637086111 7.290000e-108 401.0
11 TraesCS3A01G371000 chr3B 94.231 104 2 1 4415 4514 637086227 637086330 6.260000e-34 156.0
12 TraesCS3A01G371000 chr4A 87.414 437 48 6 344 776 469044984 469044551 3.250000e-136 496.0
13 TraesCS3A01G371000 chr4A 86.957 138 17 1 639 775 469044837 469044700 2.250000e-33 154.0
14 TraesCS3A01G371000 chr7A 85.000 400 50 7 336 733 105723237 105723628 9.430000e-107 398.0
15 TraesCS3A01G371000 chr6D 91.065 291 24 2 336 624 327022164 327021874 4.390000e-105 392.0
16 TraesCS3A01G371000 chr6D 91.636 275 20 3 16 288 44667759 44667486 1.230000e-100 377.0
17 TraesCS3A01G371000 chr6D 91.912 272 19 3 19 288 365722850 365722580 1.230000e-100 377.0
18 TraesCS3A01G371000 chr6D 89.706 136 13 1 639 773 429806007 429805872 6.220000e-39 172.0
19 TraesCS3A01G371000 chr6B 84.010 419 51 11 344 753 84490217 84490628 5.670000e-104 388.0
20 TraesCS3A01G371000 chr6B 91.606 274 20 3 17 288 368341687 368341415 4.420000e-100 375.0
21 TraesCS3A01G371000 chr5A 90.541 296 24 3 333 624 171143157 171142862 5.670000e-104 388.0
22 TraesCS3A01G371000 chr1B 92.279 272 18 3 19 288 230032759 230032489 2.640000e-102 383.0
23 TraesCS3A01G371000 chr1B 87.050 139 17 1 639 776 136497557 136497695 6.260000e-34 156.0
24 TraesCS3A01G371000 chr5D 89.286 308 28 5 343 647 132472632 132472937 9.490000e-102 381.0
25 TraesCS3A01G371000 chr5D 91.971 274 19 3 17 288 554400753 554400481 9.490000e-102 381.0
26 TraesCS3A01G371000 chr5D 87.500 56 4 3 719 772 264065551 264065605 1.400000e-05 62.1
27 TraesCS3A01G371000 chr6A 91.912 272 19 3 19 288 575539915 575540185 1.230000e-100 377.0
28 TraesCS3A01G371000 chr6A 81.379 145 20 4 636 776 411948965 411949106 1.380000e-20 111.0
29 TraesCS3A01G371000 chr4B 91.636 275 20 3 16 288 38549858 38549585 1.230000e-100 377.0
30 TraesCS3A01G371000 chr4B 91.606 274 21 2 16 288 67663136 67663408 1.230000e-100 377.0
31 TraesCS3A01G371000 chr1A 91.606 274 20 3 17 288 542818950 542819222 4.420000e-100 375.0
32 TraesCS3A01G371000 chr1A 91.489 47 3 1 731 776 352320646 352320600 3.910000e-06 63.9
33 TraesCS3A01G371000 chrUn 83.429 350 51 4 1728 2076 34095008 34095351 7.550000e-83 318.0
34 TraesCS3A01G371000 chrUn 83.573 347 50 4 1731 2076 234968774 234968434 7.550000e-83 318.0
35 TraesCS3A01G371000 chr2B 82.997 347 51 4 1731 2076 734841064 734840725 1.630000e-79 307.0
36 TraesCS3A01G371000 chr5B 87.591 137 13 4 636 772 369336616 369336748 6.260000e-34 156.0
37 TraesCS3A01G371000 chr5B 97.778 45 0 1 3644 3687 33537295 33537251 5.020000e-10 76.8
38 TraesCS3A01G371000 chr1D 84.783 138 17 3 641 775 75935148 75935012 8.160000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G371000 chr3A 621317167 621321841 4674 False 8634.00 8634 100.000 1 4675 1 chr3A.!!$F2 4674
1 TraesCS3A01G371000 chr3D 477900686 477904567 3881 False 6006.00 6006 94.639 790 4672 1 chr3D.!!$F1 3882
2 TraesCS3A01G371000 chr3B 637082066 637086330 4264 False 1317.75 2366 93.135 793 4514 4 chr3B.!!$F1 3721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.109342 CTCCCAGTGCTTCACCTTGT 59.891 55.000 0.0 0.00 34.49 3.16 F
162 163 0.110373 CGCGTGAACCTAGGCAAAAC 60.110 55.000 9.3 1.41 0.00 2.43 F
1314 1335 0.888619 AGATCGAACTTCTGTGCGGA 59.111 50.000 0.0 0.00 44.96 5.54 F
2155 2182 0.726827 CAACGTATGCTTGCCGTCAT 59.273 50.000 0.0 0.00 32.95 3.06 F
2293 2321 4.601857 TCCAAGTAGGAGTGGATTTTTCCT 59.398 41.667 0.0 0.00 43.07 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1683 1.202952 ACACCTCAACGGGGCAAAATA 60.203 47.619 0.0 0.0 41.20 1.40 R
1683 1710 3.184628 TCCCAGAATGACCAGAACATCT 58.815 45.455 0.0 0.0 39.69 2.90 R
2690 3004 1.123861 TGCCTGTCCTCTGCTGAACT 61.124 55.000 0.0 0.0 0.00 3.01 R
3170 3484 3.067742 CAGAATGAAGCCATAAAGCTGGG 59.932 47.826 0.0 0.0 44.11 4.45 R
4214 4703 1.870402 TGTCGTGCCAGTTGTAACATG 59.130 47.619 0.0 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.593945 TTTTTGTTATCATCAATAAGGCTCCT 57.406 30.769 0.00 0.00 30.39 3.69
26 27 7.807977 TTTGTTATCATCAATAAGGCTCCTC 57.192 36.000 0.00 0.00 30.39 3.71
27 28 5.869579 TGTTATCATCAATAAGGCTCCTCC 58.130 41.667 0.00 0.00 30.39 4.30
28 29 5.221925 TGTTATCATCAATAAGGCTCCTCCC 60.222 44.000 0.00 0.00 34.51 4.30
29 30 2.775418 TCATCAATAAGGCTCCTCCCA 58.225 47.619 0.00 0.00 34.51 4.37
30 31 2.707791 TCATCAATAAGGCTCCTCCCAG 59.292 50.000 0.00 0.00 34.51 4.45
31 32 2.270434 TCAATAAGGCTCCTCCCAGT 57.730 50.000 0.00 0.00 34.51 4.00
32 33 1.839994 TCAATAAGGCTCCTCCCAGTG 59.160 52.381 0.00 0.00 34.51 3.66
33 34 0.548510 AATAAGGCTCCTCCCAGTGC 59.451 55.000 0.00 0.00 34.51 4.40
34 35 0.327000 ATAAGGCTCCTCCCAGTGCT 60.327 55.000 0.00 0.00 34.51 4.40
35 36 0.547712 TAAGGCTCCTCCCAGTGCTT 60.548 55.000 0.00 0.00 34.51 3.91
36 37 1.846712 AAGGCTCCTCCCAGTGCTTC 61.847 60.000 0.00 0.00 34.51 3.86
37 38 2.596851 GGCTCCTCCCAGTGCTTCA 61.597 63.158 0.00 0.00 0.00 3.02
38 39 1.376553 GCTCCTCCCAGTGCTTCAC 60.377 63.158 0.00 0.00 34.10 3.18
39 40 1.298014 CTCCTCCCAGTGCTTCACC 59.702 63.158 0.00 0.00 34.49 4.02
40 41 1.152030 TCCTCCCAGTGCTTCACCT 60.152 57.895 0.00 0.00 34.49 4.00
41 42 0.768221 TCCTCCCAGTGCTTCACCTT 60.768 55.000 0.00 0.00 34.49 3.50
42 43 0.607489 CCTCCCAGTGCTTCACCTTG 60.607 60.000 0.00 0.00 34.49 3.61
43 44 0.109342 CTCCCAGTGCTTCACCTTGT 59.891 55.000 0.00 0.00 34.49 3.16
44 45 1.347707 CTCCCAGTGCTTCACCTTGTA 59.652 52.381 0.00 0.00 34.49 2.41
45 46 1.071699 TCCCAGTGCTTCACCTTGTAC 59.928 52.381 0.00 0.00 34.49 2.90
46 47 1.202758 CCCAGTGCTTCACCTTGTACA 60.203 52.381 0.00 0.00 34.49 2.90
47 48 2.553028 CCCAGTGCTTCACCTTGTACAT 60.553 50.000 0.00 0.00 34.49 2.29
48 49 3.307410 CCCAGTGCTTCACCTTGTACATA 60.307 47.826 0.00 0.00 34.49 2.29
49 50 4.517285 CCAGTGCTTCACCTTGTACATAT 58.483 43.478 0.00 0.00 34.49 1.78
50 51 4.333649 CCAGTGCTTCACCTTGTACATATG 59.666 45.833 0.00 0.00 34.49 1.78
51 52 3.941483 AGTGCTTCACCTTGTACATATGC 59.059 43.478 1.58 0.00 34.49 3.14
52 53 3.941483 GTGCTTCACCTTGTACATATGCT 59.059 43.478 1.58 0.00 0.00 3.79
53 54 5.104941 AGTGCTTCACCTTGTACATATGCTA 60.105 40.000 1.58 0.00 34.49 3.49
54 55 5.584649 GTGCTTCACCTTGTACATATGCTAA 59.415 40.000 1.58 0.00 0.00 3.09
55 56 5.817296 TGCTTCACCTTGTACATATGCTAAG 59.183 40.000 1.58 5.07 0.00 2.18
56 57 5.817816 GCTTCACCTTGTACATATGCTAAGT 59.182 40.000 1.58 0.00 0.00 2.24
57 58 6.018669 GCTTCACCTTGTACATATGCTAAGTC 60.019 42.308 1.58 0.00 0.00 3.01
58 59 6.791867 TCACCTTGTACATATGCTAAGTCT 57.208 37.500 1.58 0.00 0.00 3.24
59 60 7.182817 TCACCTTGTACATATGCTAAGTCTT 57.817 36.000 1.58 0.00 0.00 3.01
60 61 7.265673 TCACCTTGTACATATGCTAAGTCTTC 58.734 38.462 1.58 0.00 0.00 2.87
61 62 6.480320 CACCTTGTACATATGCTAAGTCTTCC 59.520 42.308 1.58 0.00 0.00 3.46
62 63 6.156256 ACCTTGTACATATGCTAAGTCTTCCA 59.844 38.462 1.58 0.00 0.00 3.53
63 64 6.703607 CCTTGTACATATGCTAAGTCTTCCAG 59.296 42.308 1.58 0.00 0.00 3.86
64 65 6.161855 TGTACATATGCTAAGTCTTCCAGG 57.838 41.667 1.58 0.00 0.00 4.45
65 66 5.661312 TGTACATATGCTAAGTCTTCCAGGT 59.339 40.000 1.58 0.00 0.00 4.00
66 67 6.837048 TGTACATATGCTAAGTCTTCCAGGTA 59.163 38.462 1.58 0.00 0.00 3.08
67 68 6.412362 ACATATGCTAAGTCTTCCAGGTAG 57.588 41.667 1.58 0.00 0.00 3.18
68 69 5.305644 ACATATGCTAAGTCTTCCAGGTAGG 59.694 44.000 1.58 0.00 39.47 3.18
69 70 3.185880 TGCTAAGTCTTCCAGGTAGGT 57.814 47.619 0.00 0.00 39.02 3.08
70 71 4.326600 TGCTAAGTCTTCCAGGTAGGTA 57.673 45.455 0.00 0.00 39.02 3.08
71 72 4.680407 TGCTAAGTCTTCCAGGTAGGTAA 58.320 43.478 0.00 0.00 39.02 2.85
72 73 5.088730 TGCTAAGTCTTCCAGGTAGGTAAA 58.911 41.667 0.00 0.00 39.02 2.01
73 74 5.544948 TGCTAAGTCTTCCAGGTAGGTAAAA 59.455 40.000 0.00 0.00 39.02 1.52
74 75 6.043474 TGCTAAGTCTTCCAGGTAGGTAAAAA 59.957 38.462 0.00 0.00 39.02 1.94
107 108 9.720769 TGTGGTAAGTTATTTAAAAGGAGAGAG 57.279 33.333 0.00 0.00 0.00 3.20
108 109 9.939802 GTGGTAAGTTATTTAAAAGGAGAGAGA 57.060 33.333 0.00 0.00 0.00 3.10
114 115 9.883142 AGTTATTTAAAAGGAGAGAGATGAGTG 57.117 33.333 0.00 0.00 0.00 3.51
115 116 9.660180 GTTATTTAAAAGGAGAGAGATGAGTGT 57.340 33.333 0.00 0.00 0.00 3.55
118 119 8.423906 TTTAAAAGGAGAGAGATGAGTGTAGT 57.576 34.615 0.00 0.00 0.00 2.73
119 120 9.529823 TTTAAAAGGAGAGAGATGAGTGTAGTA 57.470 33.333 0.00 0.00 0.00 1.82
120 121 9.529823 TTAAAAGGAGAGAGATGAGTGTAGTAA 57.470 33.333 0.00 0.00 0.00 2.24
121 122 7.399245 AAAGGAGAGAGATGAGTGTAGTAAC 57.601 40.000 0.00 0.00 0.00 2.50
122 123 5.442391 AGGAGAGAGATGAGTGTAGTAACC 58.558 45.833 0.00 0.00 0.00 2.85
123 124 4.581409 GGAGAGAGATGAGTGTAGTAACCC 59.419 50.000 0.00 0.00 0.00 4.11
124 125 4.538738 AGAGAGATGAGTGTAGTAACCCC 58.461 47.826 0.00 0.00 0.00 4.95
125 126 4.017407 AGAGAGATGAGTGTAGTAACCCCA 60.017 45.833 0.00 0.00 0.00 4.96
126 127 4.024670 AGAGATGAGTGTAGTAACCCCAC 58.975 47.826 0.00 0.00 0.00 4.61
127 128 3.767673 GAGATGAGTGTAGTAACCCCACA 59.232 47.826 0.00 0.00 0.00 4.17
128 129 4.164981 AGATGAGTGTAGTAACCCCACAA 58.835 43.478 0.00 0.00 0.00 3.33
129 130 4.223032 AGATGAGTGTAGTAACCCCACAAG 59.777 45.833 0.00 0.00 0.00 3.16
130 131 3.578978 TGAGTGTAGTAACCCCACAAGA 58.421 45.455 0.00 0.00 0.00 3.02
131 132 3.968649 TGAGTGTAGTAACCCCACAAGAA 59.031 43.478 0.00 0.00 0.00 2.52
132 133 4.409574 TGAGTGTAGTAACCCCACAAGAAA 59.590 41.667 0.00 0.00 0.00 2.52
133 134 4.711399 AGTGTAGTAACCCCACAAGAAAC 58.289 43.478 0.00 0.00 0.00 2.78
134 135 4.164604 AGTGTAGTAACCCCACAAGAAACA 59.835 41.667 0.00 0.00 0.00 2.83
135 136 4.883006 GTGTAGTAACCCCACAAGAAACAA 59.117 41.667 0.00 0.00 0.00 2.83
136 137 5.533528 GTGTAGTAACCCCACAAGAAACAAT 59.466 40.000 0.00 0.00 0.00 2.71
137 138 5.533154 TGTAGTAACCCCACAAGAAACAATG 59.467 40.000 0.00 0.00 0.00 2.82
138 139 2.908688 AACCCCACAAGAAACAATGC 57.091 45.000 0.00 0.00 0.00 3.56
139 140 2.086610 ACCCCACAAGAAACAATGCT 57.913 45.000 0.00 0.00 0.00 3.79
140 141 3.237268 ACCCCACAAGAAACAATGCTA 57.763 42.857 0.00 0.00 0.00 3.49
141 142 3.571590 ACCCCACAAGAAACAATGCTAA 58.428 40.909 0.00 0.00 0.00 3.09
142 143 3.573967 ACCCCACAAGAAACAATGCTAAG 59.426 43.478 0.00 0.00 0.00 2.18
143 144 3.578688 CCCACAAGAAACAATGCTAAGC 58.421 45.455 0.00 0.00 0.00 3.09
144 145 3.236816 CCACAAGAAACAATGCTAAGCG 58.763 45.455 0.00 0.00 0.00 4.68
145 146 2.658325 CACAAGAAACAATGCTAAGCGC 59.342 45.455 0.00 0.00 39.77 5.92
146 147 1.906966 CAAGAAACAATGCTAAGCGCG 59.093 47.619 0.00 0.00 43.27 6.86
147 148 1.156736 AGAAACAATGCTAAGCGCGT 58.843 45.000 8.43 0.00 43.27 6.01
148 149 1.135972 AGAAACAATGCTAAGCGCGTG 60.136 47.619 8.43 0.00 43.27 5.34
149 150 0.871722 AAACAATGCTAAGCGCGTGA 59.128 45.000 8.43 0.00 43.27 4.35
150 151 0.871722 AACAATGCTAAGCGCGTGAA 59.128 45.000 8.43 0.00 43.27 3.18
151 152 0.165944 ACAATGCTAAGCGCGTGAAC 59.834 50.000 8.43 0.00 43.27 3.18
152 153 0.521242 CAATGCTAAGCGCGTGAACC 60.521 55.000 8.43 0.00 43.27 3.62
153 154 0.673644 AATGCTAAGCGCGTGAACCT 60.674 50.000 8.43 0.00 43.27 3.50
154 155 0.174845 ATGCTAAGCGCGTGAACCTA 59.825 50.000 8.43 0.00 43.27 3.08
155 156 0.457853 TGCTAAGCGCGTGAACCTAG 60.458 55.000 8.43 0.00 43.27 3.02
156 157 1.146358 GCTAAGCGCGTGAACCTAGG 61.146 60.000 7.41 7.41 0.00 3.02
157 158 1.146358 CTAAGCGCGTGAACCTAGGC 61.146 60.000 9.30 0.00 0.00 3.93
158 159 1.879737 TAAGCGCGTGAACCTAGGCA 61.880 55.000 9.30 0.00 0.00 4.75
159 160 2.725203 AAGCGCGTGAACCTAGGCAA 62.725 55.000 9.30 0.00 0.00 4.52
160 161 2.322081 GCGCGTGAACCTAGGCAAA 61.322 57.895 9.30 0.00 0.00 3.68
161 162 1.847890 GCGCGTGAACCTAGGCAAAA 61.848 55.000 9.30 0.00 0.00 2.44
162 163 0.110373 CGCGTGAACCTAGGCAAAAC 60.110 55.000 9.30 1.41 0.00 2.43
163 164 0.948678 GCGTGAACCTAGGCAAAACA 59.051 50.000 9.30 0.00 0.00 2.83
164 165 1.539827 GCGTGAACCTAGGCAAAACAT 59.460 47.619 9.30 0.00 0.00 2.71
165 166 2.030274 GCGTGAACCTAGGCAAAACATT 60.030 45.455 9.30 0.00 0.00 2.71
166 167 3.552068 GCGTGAACCTAGGCAAAACATTT 60.552 43.478 9.30 0.00 0.00 2.32
167 168 4.320641 GCGTGAACCTAGGCAAAACATTTA 60.321 41.667 9.30 0.00 0.00 1.40
168 169 5.764131 CGTGAACCTAGGCAAAACATTTAA 58.236 37.500 9.30 0.00 0.00 1.52
169 170 6.210078 CGTGAACCTAGGCAAAACATTTAAA 58.790 36.000 9.30 0.00 0.00 1.52
170 171 6.697892 CGTGAACCTAGGCAAAACATTTAAAA 59.302 34.615 9.30 0.00 0.00 1.52
171 172 7.222999 CGTGAACCTAGGCAAAACATTTAAAAA 59.777 33.333 9.30 0.00 0.00 1.94
189 190 2.990740 AAAGGAAGCCCACCAATACA 57.009 45.000 0.00 0.00 33.88 2.29
190 191 3.473113 AAAGGAAGCCCACCAATACAT 57.527 42.857 0.00 0.00 33.88 2.29
191 192 2.442236 AGGAAGCCCACCAATACATG 57.558 50.000 0.00 0.00 33.88 3.21
192 193 1.922447 AGGAAGCCCACCAATACATGA 59.078 47.619 0.00 0.00 33.88 3.07
193 194 2.311542 AGGAAGCCCACCAATACATGAA 59.688 45.455 0.00 0.00 33.88 2.57
194 195 2.689983 GGAAGCCCACCAATACATGAAG 59.310 50.000 0.00 0.00 0.00 3.02
195 196 3.620488 GAAGCCCACCAATACATGAAGA 58.380 45.455 0.00 0.00 0.00 2.87
196 197 3.287867 AGCCCACCAATACATGAAGAG 57.712 47.619 0.00 0.00 0.00 2.85
197 198 1.678101 GCCCACCAATACATGAAGAGC 59.322 52.381 0.00 0.00 0.00 4.09
198 199 2.684927 GCCCACCAATACATGAAGAGCT 60.685 50.000 0.00 0.00 0.00 4.09
199 200 3.624777 CCCACCAATACATGAAGAGCTT 58.375 45.455 0.00 0.00 0.00 3.74
200 201 4.019174 CCCACCAATACATGAAGAGCTTT 58.981 43.478 0.00 0.00 0.00 3.51
201 202 5.192927 CCCACCAATACATGAAGAGCTTTA 58.807 41.667 0.00 0.00 0.00 1.85
202 203 5.297776 CCCACCAATACATGAAGAGCTTTAG 59.702 44.000 0.00 0.00 0.00 1.85
203 204 5.882557 CCACCAATACATGAAGAGCTTTAGT 59.117 40.000 0.00 0.00 0.00 2.24
204 205 6.375455 CCACCAATACATGAAGAGCTTTAGTT 59.625 38.462 0.00 0.00 0.00 2.24
205 206 7.246311 CACCAATACATGAAGAGCTTTAGTTG 58.754 38.462 0.00 0.00 0.00 3.16
206 207 6.127897 ACCAATACATGAAGAGCTTTAGTTGC 60.128 38.462 0.00 0.00 0.00 4.17
207 208 6.094603 CCAATACATGAAGAGCTTTAGTTGCT 59.905 38.462 0.00 0.00 44.24 3.91
208 209 7.280876 CCAATACATGAAGAGCTTTAGTTGCTA 59.719 37.037 0.00 0.00 41.30 3.49
209 210 8.668353 CAATACATGAAGAGCTTTAGTTGCTAA 58.332 33.333 0.00 0.00 41.30 3.09
210 211 8.792830 ATACATGAAGAGCTTTAGTTGCTAAA 57.207 30.769 0.00 2.01 41.30 1.85
211 212 7.693969 ACATGAAGAGCTTTAGTTGCTAAAT 57.306 32.000 0.00 0.00 41.30 1.40
212 213 7.756558 ACATGAAGAGCTTTAGTTGCTAAATC 58.243 34.615 0.00 0.00 41.30 2.17
213 214 7.391554 ACATGAAGAGCTTTAGTTGCTAAATCA 59.608 33.333 0.00 3.92 41.30 2.57
214 215 7.928307 TGAAGAGCTTTAGTTGCTAAATCAT 57.072 32.000 2.34 0.00 41.30 2.45
215 216 8.340618 TGAAGAGCTTTAGTTGCTAAATCATT 57.659 30.769 2.34 0.00 41.30 2.57
216 217 9.448438 TGAAGAGCTTTAGTTGCTAAATCATTA 57.552 29.630 2.34 0.00 41.30 1.90
229 230 8.400184 TGCTAAATCATTATATGAAGCAAGCT 57.600 30.769 10.49 0.00 43.66 3.74
230 231 8.853126 TGCTAAATCATTATATGAAGCAAGCTT 58.147 29.630 7.07 7.07 43.66 3.74
234 235 7.991084 ATCATTATATGAAGCAAGCTTAGCA 57.009 32.000 18.74 3.03 43.50 3.49
235 236 7.806409 TCATTATATGAAGCAAGCTTAGCAA 57.194 32.000 18.74 7.95 36.11 3.91
236 237 7.642669 TCATTATATGAAGCAAGCTTAGCAAC 58.357 34.615 18.74 13.35 36.11 4.17
237 238 4.907879 ATATGAAGCAAGCTTAGCAACC 57.092 40.909 18.74 10.13 36.26 3.77
238 239 1.979855 TGAAGCAAGCTTAGCAACCA 58.020 45.000 18.74 11.91 36.26 3.67
239 240 2.517959 TGAAGCAAGCTTAGCAACCAT 58.482 42.857 18.74 0.00 36.26 3.55
240 241 3.684908 TGAAGCAAGCTTAGCAACCATA 58.315 40.909 18.74 1.95 36.26 2.74
241 242 4.078537 TGAAGCAAGCTTAGCAACCATAA 58.921 39.130 18.74 0.00 36.26 1.90
242 243 4.156556 TGAAGCAAGCTTAGCAACCATAAG 59.843 41.667 18.74 0.00 36.26 1.73
251 252 2.369394 AGCAACCATAAGCTAAGCACC 58.631 47.619 0.00 0.00 39.78 5.01
252 253 2.025887 AGCAACCATAAGCTAAGCACCT 60.026 45.455 0.00 0.00 39.78 4.00
253 254 3.199946 AGCAACCATAAGCTAAGCACCTA 59.800 43.478 0.00 0.00 39.78 3.08
254 255 4.137543 GCAACCATAAGCTAAGCACCTAT 58.862 43.478 0.00 0.00 0.00 2.57
255 256 4.023707 GCAACCATAAGCTAAGCACCTATG 60.024 45.833 0.00 0.00 0.00 2.23
271 272 6.352016 CACCTATGCATTGAGGAGTATAGT 57.648 41.667 20.28 0.00 36.61 2.12
272 273 6.763355 CACCTATGCATTGAGGAGTATAGTT 58.237 40.000 20.28 0.00 36.61 2.24
273 274 6.648310 CACCTATGCATTGAGGAGTATAGTTG 59.352 42.308 20.28 3.86 36.61 3.16
274 275 6.554982 ACCTATGCATTGAGGAGTATAGTTGA 59.445 38.462 20.28 0.00 36.61 3.18
275 276 7.236432 ACCTATGCATTGAGGAGTATAGTTGAT 59.764 37.037 20.28 0.00 36.61 2.57
276 277 8.753133 CCTATGCATTGAGGAGTATAGTTGATA 58.247 37.037 9.61 0.00 34.46 2.15
279 280 6.931281 TGCATTGAGGAGTATAGTTGATAAGC 59.069 38.462 0.00 0.00 0.00 3.09
280 281 7.158021 GCATTGAGGAGTATAGTTGATAAGCT 58.842 38.462 0.00 0.00 0.00 3.74
281 282 8.307483 GCATTGAGGAGTATAGTTGATAAGCTA 58.693 37.037 0.00 0.00 0.00 3.32
285 286 9.815306 TGAGGAGTATAGTTGATAAGCTATTCT 57.185 33.333 0.00 0.00 31.18 2.40
293 294 6.292150 AGTTGATAAGCTATTCTAAGCACCC 58.708 40.000 0.00 0.00 45.30 4.61
294 295 5.887214 TGATAAGCTATTCTAAGCACCCA 57.113 39.130 0.00 0.00 45.30 4.51
295 296 6.439636 TGATAAGCTATTCTAAGCACCCAT 57.560 37.500 0.00 0.00 45.30 4.00
296 297 7.553504 TGATAAGCTATTCTAAGCACCCATA 57.446 36.000 0.00 0.00 45.30 2.74
297 298 7.386851 TGATAAGCTATTCTAAGCACCCATAC 58.613 38.462 0.00 0.00 45.30 2.39
298 299 5.630415 AAGCTATTCTAAGCACCCATACA 57.370 39.130 0.00 0.00 45.30 2.29
299 300 5.832539 AGCTATTCTAAGCACCCATACAT 57.167 39.130 0.00 0.00 45.30 2.29
300 301 6.192970 AGCTATTCTAAGCACCCATACATT 57.807 37.500 0.00 0.00 45.30 2.71
301 302 7.316393 AGCTATTCTAAGCACCCATACATTA 57.684 36.000 0.00 0.00 45.30 1.90
302 303 7.390027 AGCTATTCTAAGCACCCATACATTAG 58.610 38.462 0.00 0.00 45.30 1.73
303 304 6.092807 GCTATTCTAAGCACCCATACATTAGC 59.907 42.308 0.00 0.00 42.30 3.09
304 305 5.366482 TTCTAAGCACCCATACATTAGCA 57.634 39.130 0.00 0.00 0.00 3.49
305 306 5.366482 TCTAAGCACCCATACATTAGCAA 57.634 39.130 0.00 0.00 0.00 3.91
306 307 5.123227 TCTAAGCACCCATACATTAGCAAC 58.877 41.667 0.00 0.00 0.00 4.17
307 308 3.364460 AGCACCCATACATTAGCAACA 57.636 42.857 0.00 0.00 0.00 3.33
308 309 3.282021 AGCACCCATACATTAGCAACAG 58.718 45.455 0.00 0.00 0.00 3.16
309 310 2.223572 GCACCCATACATTAGCAACAGC 60.224 50.000 0.00 0.00 0.00 4.40
310 311 2.358898 CACCCATACATTAGCAACAGCC 59.641 50.000 0.00 0.00 0.00 4.85
311 312 2.242196 ACCCATACATTAGCAACAGCCT 59.758 45.455 0.00 0.00 0.00 4.58
312 313 3.458118 ACCCATACATTAGCAACAGCCTA 59.542 43.478 0.00 0.00 0.00 3.93
313 314 4.080015 ACCCATACATTAGCAACAGCCTAA 60.080 41.667 0.00 0.00 0.00 2.69
314 315 4.887071 CCCATACATTAGCAACAGCCTAAA 59.113 41.667 0.00 0.00 0.00 1.85
315 316 5.009010 CCCATACATTAGCAACAGCCTAAAG 59.991 44.000 0.00 0.00 0.00 1.85
316 317 5.822519 CCATACATTAGCAACAGCCTAAAGA 59.177 40.000 0.00 0.00 0.00 2.52
317 318 6.318648 CCATACATTAGCAACAGCCTAAAGAA 59.681 38.462 0.00 0.00 0.00 2.52
318 319 5.629079 ACATTAGCAACAGCCTAAAGAAC 57.371 39.130 0.00 0.00 0.00 3.01
319 320 5.070001 ACATTAGCAACAGCCTAAAGAACA 58.930 37.500 0.00 0.00 0.00 3.18
320 321 5.048713 ACATTAGCAACAGCCTAAAGAACAC 60.049 40.000 0.00 0.00 0.00 3.32
321 322 2.930950 AGCAACAGCCTAAAGAACACA 58.069 42.857 0.00 0.00 0.00 3.72
322 323 2.618709 AGCAACAGCCTAAAGAACACAC 59.381 45.455 0.00 0.00 0.00 3.82
323 324 2.618709 GCAACAGCCTAAAGAACACACT 59.381 45.455 0.00 0.00 0.00 3.55
324 325 3.304057 GCAACAGCCTAAAGAACACACTC 60.304 47.826 0.00 0.00 0.00 3.51
325 326 3.838244 ACAGCCTAAAGAACACACTCA 57.162 42.857 0.00 0.00 0.00 3.41
326 327 4.150897 ACAGCCTAAAGAACACACTCAA 57.849 40.909 0.00 0.00 0.00 3.02
327 328 4.718961 ACAGCCTAAAGAACACACTCAAT 58.281 39.130 0.00 0.00 0.00 2.57
328 329 4.757149 ACAGCCTAAAGAACACACTCAATC 59.243 41.667 0.00 0.00 0.00 2.67
329 330 4.154918 CAGCCTAAAGAACACACTCAATCC 59.845 45.833 0.00 0.00 0.00 3.01
330 331 4.072131 GCCTAAAGAACACACTCAATCCA 58.928 43.478 0.00 0.00 0.00 3.41
331 332 4.702131 GCCTAAAGAACACACTCAATCCAT 59.298 41.667 0.00 0.00 0.00 3.41
332 333 5.163713 GCCTAAAGAACACACTCAATCCATC 60.164 44.000 0.00 0.00 0.00 3.51
333 334 6.176183 CCTAAAGAACACACTCAATCCATCT 58.824 40.000 0.00 0.00 0.00 2.90
334 335 7.331026 CCTAAAGAACACACTCAATCCATCTA 58.669 38.462 0.00 0.00 0.00 1.98
335 336 7.989741 CCTAAAGAACACACTCAATCCATCTAT 59.010 37.037 0.00 0.00 0.00 1.98
336 337 9.388506 CTAAAGAACACACTCAATCCATCTATT 57.611 33.333 0.00 0.00 0.00 1.73
337 338 8.641498 AAAGAACACACTCAATCCATCTATTT 57.359 30.769 0.00 0.00 0.00 1.40
338 339 8.641498 AAGAACACACTCAATCCATCTATTTT 57.359 30.769 0.00 0.00 0.00 1.82
339 340 8.641498 AGAACACACTCAATCCATCTATTTTT 57.359 30.769 0.00 0.00 0.00 1.94
340 341 8.517878 AGAACACACTCAATCCATCTATTTTTG 58.482 33.333 0.00 0.00 0.00 2.44
341 342 7.765695 ACACACTCAATCCATCTATTTTTGT 57.234 32.000 0.00 0.00 0.00 2.83
342 343 8.181904 ACACACTCAATCCATCTATTTTTGTT 57.818 30.769 0.00 0.00 0.00 2.83
343 344 9.295825 ACACACTCAATCCATCTATTTTTGTTA 57.704 29.630 0.00 0.00 0.00 2.41
344 345 9.559958 CACACTCAATCCATCTATTTTTGTTAC 57.440 33.333 0.00 0.00 0.00 2.50
345 346 9.520515 ACACTCAATCCATCTATTTTTGTTACT 57.479 29.630 0.00 0.00 0.00 2.24
358 359 9.478019 CTATTTTTGTTACTAGAACAATGCTCG 57.522 33.333 16.20 6.79 39.56 5.03
359 360 6.854496 TTTTGTTACTAGAACAATGCTCGT 57.146 33.333 16.20 0.00 39.56 4.18
360 361 6.854496 TTTGTTACTAGAACAATGCTCGTT 57.146 33.333 16.20 0.00 39.56 3.85
361 362 6.462073 TTGTTACTAGAACAATGCTCGTTC 57.538 37.500 13.22 5.62 42.52 3.95
362 363 5.534407 TGTTACTAGAACAATGCTCGTTCA 58.466 37.500 13.45 2.69 44.22 3.18
363 364 6.163476 TGTTACTAGAACAATGCTCGTTCAT 58.837 36.000 13.45 4.29 44.22 2.57
364 365 6.649141 TGTTACTAGAACAATGCTCGTTCATT 59.351 34.615 13.45 0.36 44.22 2.57
378 379 4.804608 CGTTCATTGCAACGGGATATAA 57.195 40.909 0.00 0.00 44.43 0.98
379 380 5.163302 CGTTCATTGCAACGGGATATAAA 57.837 39.130 0.00 0.00 44.43 1.40
380 381 5.757886 CGTTCATTGCAACGGGATATAAAT 58.242 37.500 0.00 0.00 44.43 1.40
381 382 6.893759 CGTTCATTGCAACGGGATATAAATA 58.106 36.000 0.00 0.00 44.43 1.40
382 383 7.526608 CGTTCATTGCAACGGGATATAAATAT 58.473 34.615 0.00 0.00 44.43 1.28
383 384 8.020819 CGTTCATTGCAACGGGATATAAATATT 58.979 33.333 0.00 0.00 44.43 1.28
384 385 9.341899 GTTCATTGCAACGGGATATAAATATTC 57.658 33.333 0.00 0.00 0.00 1.75
385 386 8.862325 TCATTGCAACGGGATATAAATATTCT 57.138 30.769 0.00 0.00 0.00 2.40
386 387 9.952030 TCATTGCAACGGGATATAAATATTCTA 57.048 29.630 0.00 0.00 0.00 2.10
408 409 8.638685 TCTATTACGTTAGCTTGTGATTTACC 57.361 34.615 0.00 0.00 0.00 2.85
409 410 8.472413 TCTATTACGTTAGCTTGTGATTTACCT 58.528 33.333 0.00 0.00 0.00 3.08
410 411 6.715344 TTACGTTAGCTTGTGATTTACCTG 57.285 37.500 0.00 0.00 0.00 4.00
411 412 4.638304 ACGTTAGCTTGTGATTTACCTGT 58.362 39.130 0.00 0.00 0.00 4.00
412 413 4.689345 ACGTTAGCTTGTGATTTACCTGTC 59.311 41.667 0.00 0.00 0.00 3.51
413 414 4.688879 CGTTAGCTTGTGATTTACCTGTCA 59.311 41.667 0.00 0.00 0.00 3.58
414 415 5.178623 CGTTAGCTTGTGATTTACCTGTCAA 59.821 40.000 0.00 0.00 0.00 3.18
415 416 6.128282 CGTTAGCTTGTGATTTACCTGTCAAT 60.128 38.462 0.00 0.00 0.00 2.57
416 417 7.064134 CGTTAGCTTGTGATTTACCTGTCAATA 59.936 37.037 0.00 0.00 0.00 1.90
417 418 8.726988 GTTAGCTTGTGATTTACCTGTCAATAA 58.273 33.333 0.00 0.00 0.00 1.40
418 419 7.944729 AGCTTGTGATTTACCTGTCAATAAT 57.055 32.000 0.00 0.00 0.00 1.28
420 421 9.461312 AGCTTGTGATTTACCTGTCAATAATAA 57.539 29.630 0.00 0.00 0.00 1.40
424 425 9.183368 TGTGATTTACCTGTCAATAATAATGCA 57.817 29.630 0.00 0.00 0.00 3.96
430 431 9.800433 TTACCTGTCAATAATAATGCAATTGTG 57.200 29.630 7.40 0.00 36.99 3.33
431 432 7.839907 ACCTGTCAATAATAATGCAATTGTGT 58.160 30.769 7.40 0.00 36.99 3.72
432 433 8.965819 ACCTGTCAATAATAATGCAATTGTGTA 58.034 29.630 7.40 0.00 36.99 2.90
433 434 9.800433 CCTGTCAATAATAATGCAATTGTGTAA 57.200 29.630 7.40 0.00 36.99 2.41
447 448 9.702494 TGCAATTGTGTAAATAAATGTTCATCA 57.298 25.926 7.40 0.00 0.00 3.07
458 459 8.915871 AATAAATGTTCATCAAATTCTGACCG 57.084 30.769 0.00 0.00 36.69 4.79
459 460 5.964958 AATGTTCATCAAATTCTGACCGT 57.035 34.783 0.00 0.00 36.69 4.83
460 461 4.747540 TGTTCATCAAATTCTGACCGTG 57.252 40.909 0.00 0.00 36.69 4.94
461 462 4.384940 TGTTCATCAAATTCTGACCGTGA 58.615 39.130 0.00 0.00 36.69 4.35
462 463 4.819088 TGTTCATCAAATTCTGACCGTGAA 59.181 37.500 0.00 0.00 36.69 3.18
463 464 5.473162 TGTTCATCAAATTCTGACCGTGAAT 59.527 36.000 0.00 0.00 34.60 2.57
464 465 6.016360 TGTTCATCAAATTCTGACCGTGAATT 60.016 34.615 0.00 0.00 43.44 2.17
465 466 7.174080 TGTTCATCAAATTCTGACCGTGAATTA 59.826 33.333 0.00 0.00 41.54 1.40
466 467 7.072177 TCATCAAATTCTGACCGTGAATTAC 57.928 36.000 0.00 0.00 41.54 1.89
467 468 5.873179 TCAAATTCTGACCGTGAATTACC 57.127 39.130 0.00 0.00 41.54 2.85
468 469 5.556915 TCAAATTCTGACCGTGAATTACCT 58.443 37.500 0.00 0.00 41.54 3.08
469 470 6.001460 TCAAATTCTGACCGTGAATTACCTT 58.999 36.000 0.00 0.00 41.54 3.50
470 471 7.162761 TCAAATTCTGACCGTGAATTACCTTA 58.837 34.615 0.00 0.00 41.54 2.69
471 472 7.827236 TCAAATTCTGACCGTGAATTACCTTAT 59.173 33.333 0.00 0.00 41.54 1.73
472 473 9.104965 CAAATTCTGACCGTGAATTACCTTATA 57.895 33.333 0.00 0.00 41.54 0.98
473 474 9.847224 AAATTCTGACCGTGAATTACCTTATAT 57.153 29.630 0.00 0.00 41.54 0.86
474 475 9.847224 AATTCTGACCGTGAATTACCTTATATT 57.153 29.630 0.00 0.00 40.88 1.28
475 476 9.847224 ATTCTGACCGTGAATTACCTTATATTT 57.153 29.630 0.00 0.00 30.84 1.40
476 477 9.675464 TTCTGACCGTGAATTACCTTATATTTT 57.325 29.630 0.00 0.00 0.00 1.82
477 478 9.104965 TCTGACCGTGAATTACCTTATATTTTG 57.895 33.333 0.00 0.00 0.00 2.44
478 479 9.104965 CTGACCGTGAATTACCTTATATTTTGA 57.895 33.333 0.00 0.00 0.00 2.69
479 480 9.621629 TGACCGTGAATTACCTTATATTTTGAT 57.378 29.630 0.00 0.00 0.00 2.57
522 523 9.586435 AAAGTAAAGTGAAATTTGTTCAGAAGG 57.414 29.630 0.00 0.00 0.00 3.46
523 524 8.293699 AGTAAAGTGAAATTTGTTCAGAAGGT 57.706 30.769 0.00 0.00 0.00 3.50
524 525 9.403583 AGTAAAGTGAAATTTGTTCAGAAGGTA 57.596 29.630 0.00 0.00 0.00 3.08
527 528 7.881775 AGTGAAATTTGTTCAGAAGGTAAGT 57.118 32.000 0.00 0.00 0.00 2.24
528 529 8.974060 AGTGAAATTTGTTCAGAAGGTAAGTA 57.026 30.769 0.00 0.00 0.00 2.24
529 530 9.403583 AGTGAAATTTGTTCAGAAGGTAAGTAA 57.596 29.630 0.00 0.00 0.00 2.24
574 575 4.670896 ACATTGAAGGTTGGACAAAAGG 57.329 40.909 0.00 0.00 0.00 3.11
575 576 4.030216 ACATTGAAGGTTGGACAAAAGGT 58.970 39.130 0.00 0.00 0.00 3.50
576 577 4.141959 ACATTGAAGGTTGGACAAAAGGTG 60.142 41.667 0.00 0.00 0.00 4.00
577 578 2.383855 TGAAGGTTGGACAAAAGGTGG 58.616 47.619 0.00 0.00 0.00 4.61
578 579 2.291930 TGAAGGTTGGACAAAAGGTGGT 60.292 45.455 0.00 0.00 0.00 4.16
579 580 3.053544 TGAAGGTTGGACAAAAGGTGGTA 60.054 43.478 0.00 0.00 0.00 3.25
580 581 3.673543 AGGTTGGACAAAAGGTGGTAA 57.326 42.857 0.00 0.00 0.00 2.85
581 582 3.562182 AGGTTGGACAAAAGGTGGTAAG 58.438 45.455 0.00 0.00 0.00 2.34
582 583 3.203487 AGGTTGGACAAAAGGTGGTAAGA 59.797 43.478 0.00 0.00 0.00 2.10
583 584 3.955551 GGTTGGACAAAAGGTGGTAAGAA 59.044 43.478 0.00 0.00 0.00 2.52
584 585 4.037565 GGTTGGACAAAAGGTGGTAAGAAG 59.962 45.833 0.00 0.00 0.00 2.85
585 586 4.781775 TGGACAAAAGGTGGTAAGAAGA 57.218 40.909 0.00 0.00 0.00 2.87
586 587 5.118729 TGGACAAAAGGTGGTAAGAAGAA 57.881 39.130 0.00 0.00 0.00 2.52
587 588 5.511363 TGGACAAAAGGTGGTAAGAAGAAA 58.489 37.500 0.00 0.00 0.00 2.52
588 589 5.592688 TGGACAAAAGGTGGTAAGAAGAAAG 59.407 40.000 0.00 0.00 0.00 2.62
589 590 5.009710 GGACAAAAGGTGGTAAGAAGAAAGG 59.990 44.000 0.00 0.00 0.00 3.11
590 591 5.516044 ACAAAAGGTGGTAAGAAGAAAGGT 58.484 37.500 0.00 0.00 0.00 3.50
591 592 5.359860 ACAAAAGGTGGTAAGAAGAAAGGTG 59.640 40.000 0.00 0.00 0.00 4.00
592 593 5.382664 AAAGGTGGTAAGAAGAAAGGTGA 57.617 39.130 0.00 0.00 0.00 4.02
593 594 5.382664 AAGGTGGTAAGAAGAAAGGTGAA 57.617 39.130 0.00 0.00 0.00 3.18
594 595 5.382664 AGGTGGTAAGAAGAAAGGTGAAA 57.617 39.130 0.00 0.00 0.00 2.69
595 596 5.131067 AGGTGGTAAGAAGAAAGGTGAAAC 58.869 41.667 0.00 0.00 0.00 2.78
596 597 4.024302 GGTGGTAAGAAGAAAGGTGAAACG 60.024 45.833 0.00 0.00 38.12 3.60
597 598 4.024302 GTGGTAAGAAGAAAGGTGAAACGG 60.024 45.833 0.00 0.00 38.12 4.44
598 599 3.501062 GGTAAGAAGAAAGGTGAAACGGG 59.499 47.826 0.00 0.00 38.12 5.28
599 600 3.570912 AAGAAGAAAGGTGAAACGGGA 57.429 42.857 0.00 0.00 38.12 5.14
600 601 3.570912 AGAAGAAAGGTGAAACGGGAA 57.429 42.857 0.00 0.00 38.12 3.97
601 602 3.211865 AGAAGAAAGGTGAAACGGGAAC 58.788 45.455 0.00 0.00 38.12 3.62
669 670 9.586435 AAAGTAAAGTGAAATTTGTTCAGAAGG 57.414 29.630 0.00 0.00 0.00 3.46
670 671 8.293699 AGTAAAGTGAAATTTGTTCAGAAGGT 57.706 30.769 0.00 0.00 0.00 3.50
671 672 9.403583 AGTAAAGTGAAATTTGTTCAGAAGGTA 57.596 29.630 0.00 0.00 0.00 3.08
674 675 7.881775 AGTGAAATTTGTTCAGAAGGTAAGT 57.118 32.000 0.00 0.00 0.00 2.24
675 676 8.974060 AGTGAAATTTGTTCAGAAGGTAAGTA 57.026 30.769 0.00 0.00 0.00 2.24
676 677 9.403583 AGTGAAATTTGTTCAGAAGGTAAGTAA 57.596 29.630 0.00 0.00 0.00 2.24
685 686 9.706691 TGTTCAGAAGGTAAGTAAACTAAGATG 57.293 33.333 0.00 0.00 0.00 2.90
686 687 9.924650 GTTCAGAAGGTAAGTAAACTAAGATGA 57.075 33.333 0.00 0.00 0.00 2.92
710 711 9.996554 TGATTGATTATCATATACGTTGAAGGT 57.003 29.630 0.00 0.00 38.35 3.50
713 714 8.601845 TGATTATCATATACGTTGAAGGTTGG 57.398 34.615 0.00 0.00 0.00 3.77
714 715 8.425703 TGATTATCATATACGTTGAAGGTTGGA 58.574 33.333 0.00 0.00 0.00 3.53
715 716 9.436957 GATTATCATATACGTTGAAGGTTGGAT 57.563 33.333 0.00 0.00 0.00 3.41
719 720 9.621629 ATCATATACGTTGAAGGTTGGATAAAA 57.378 29.630 0.00 0.00 0.00 1.52
720 721 9.104965 TCATATACGTTGAAGGTTGGATAAAAG 57.895 33.333 0.00 0.00 0.00 2.27
721 722 6.753107 ATACGTTGAAGGTTGGATAAAAGG 57.247 37.500 0.00 0.00 0.00 3.11
722 723 3.824443 ACGTTGAAGGTTGGATAAAAGGG 59.176 43.478 0.00 0.00 0.00 3.95
723 724 3.824443 CGTTGAAGGTTGGATAAAAGGGT 59.176 43.478 0.00 0.00 0.00 4.34
724 725 4.320935 CGTTGAAGGTTGGATAAAAGGGTG 60.321 45.833 0.00 0.00 0.00 4.61
725 726 3.773560 TGAAGGTTGGATAAAAGGGTGG 58.226 45.455 0.00 0.00 0.00 4.61
726 727 3.141272 TGAAGGTTGGATAAAAGGGTGGT 59.859 43.478 0.00 0.00 0.00 4.16
727 728 3.169512 AGGTTGGATAAAAGGGTGGTG 57.830 47.619 0.00 0.00 0.00 4.17
728 729 2.719705 AGGTTGGATAAAAGGGTGGTGA 59.280 45.455 0.00 0.00 0.00 4.02
729 730 3.089284 GGTTGGATAAAAGGGTGGTGAG 58.911 50.000 0.00 0.00 0.00 3.51
730 731 3.245122 GGTTGGATAAAAGGGTGGTGAGA 60.245 47.826 0.00 0.00 0.00 3.27
731 732 4.403734 GTTGGATAAAAGGGTGGTGAGAA 58.596 43.478 0.00 0.00 0.00 2.87
732 733 4.301072 TGGATAAAAGGGTGGTGAGAAG 57.699 45.455 0.00 0.00 0.00 2.85
733 734 3.913799 TGGATAAAAGGGTGGTGAGAAGA 59.086 43.478 0.00 0.00 0.00 2.87
734 735 4.352595 TGGATAAAAGGGTGGTGAGAAGAA 59.647 41.667 0.00 0.00 0.00 2.52
735 736 5.163034 TGGATAAAAGGGTGGTGAGAAGAAA 60.163 40.000 0.00 0.00 0.00 2.52
736 737 5.416013 GGATAAAAGGGTGGTGAGAAGAAAG 59.584 44.000 0.00 0.00 0.00 2.62
737 738 2.959465 AAGGGTGGTGAGAAGAAAGG 57.041 50.000 0.00 0.00 0.00 3.11
738 739 1.821088 AGGGTGGTGAGAAGAAAGGT 58.179 50.000 0.00 0.00 0.00 3.50
739 740 1.421646 AGGGTGGTGAGAAGAAAGGTG 59.578 52.381 0.00 0.00 0.00 4.00
740 741 1.420138 GGGTGGTGAGAAGAAAGGTGA 59.580 52.381 0.00 0.00 0.00 4.02
741 742 2.158667 GGGTGGTGAGAAGAAAGGTGAA 60.159 50.000 0.00 0.00 0.00 3.18
742 743 3.551846 GGTGGTGAGAAGAAAGGTGAAA 58.448 45.455 0.00 0.00 0.00 2.69
743 744 3.315470 GGTGGTGAGAAGAAAGGTGAAAC 59.685 47.826 0.00 0.00 0.00 2.78
744 745 3.002348 GTGGTGAGAAGAAAGGTGAAACG 59.998 47.826 0.00 0.00 38.12 3.60
745 746 2.548480 GGTGAGAAGAAAGGTGAAACGG 59.452 50.000 0.00 0.00 38.12 4.44
746 747 3.463944 GTGAGAAGAAAGGTGAAACGGA 58.536 45.455 0.00 0.00 38.12 4.69
747 748 3.875134 GTGAGAAGAAAGGTGAAACGGAA 59.125 43.478 0.00 0.00 38.12 4.30
748 749 3.875134 TGAGAAGAAAGGTGAAACGGAAC 59.125 43.478 0.00 0.00 38.12 3.62
749 750 3.211865 AGAAGAAAGGTGAAACGGAACC 58.788 45.455 0.00 0.00 38.12 3.62
755 756 3.782656 AGGTGAAACGGAACCTTATGT 57.217 42.857 0.00 0.00 44.63 2.29
756 757 4.094830 AGGTGAAACGGAACCTTATGTT 57.905 40.909 0.00 0.00 44.63 2.71
824 830 2.159282 CCATAGGAGGACACGTGTACAC 60.159 54.545 31.65 25.29 0.00 2.90
864 878 3.023832 ACCGCTGAATTTAATGGAAGGG 58.976 45.455 0.00 0.00 0.00 3.95
904 925 3.699894 ACCGGTCAGCTCAGCAGG 61.700 66.667 0.00 0.00 0.00 4.85
1168 1189 2.127528 AGGTCCCCTTCTTCCCCC 59.872 66.667 0.00 0.00 0.00 5.40
1272 1293 8.939926 CGGTACTATTAATTTTGCGTGTTAATG 58.060 33.333 0.00 0.00 32.19 1.90
1314 1335 0.888619 AGATCGAACTTCTGTGCGGA 59.111 50.000 0.00 0.00 44.96 5.54
1430 1451 2.655685 GCCGCCGTCTTCGATCTC 60.656 66.667 0.00 0.00 39.71 2.75
1628 1649 4.761739 ACCAATTCCAGTCAAGTATGTGTG 59.238 41.667 0.00 0.00 0.00 3.82
1629 1650 4.761739 CCAATTCCAGTCAAGTATGTGTGT 59.238 41.667 0.00 0.00 0.00 3.72
1640 1667 6.310224 GTCAAGTATGTGTGTTTTGCTTTGTT 59.690 34.615 0.00 0.00 0.00 2.83
1641 1668 6.870965 TCAAGTATGTGTGTTTTGCTTTGTTT 59.129 30.769 0.00 0.00 0.00 2.83
1642 1669 6.645700 AGTATGTGTGTTTTGCTTTGTTTG 57.354 33.333 0.00 0.00 0.00 2.93
1645 1672 5.527511 TGTGTGTTTTGCTTTGTTTGATG 57.472 34.783 0.00 0.00 0.00 3.07
1647 1674 3.373439 TGTGTTTTGCTTTGTTTGATGCC 59.627 39.130 0.00 0.00 0.00 4.40
1656 1683 5.105797 TGCTTTGTTTGATGCCGATCTTAAT 60.106 36.000 0.00 0.00 0.00 1.40
1683 1710 1.544537 CCCCGTTGAGGTGTTGATTCA 60.545 52.381 0.00 0.00 38.74 2.57
1718 1745 6.992123 GTCATTCTGGGATTGGTTTTCTTTTT 59.008 34.615 0.00 0.00 0.00 1.94
1774 1801 1.197721 GTGTACAGTGCTGCAATGTCC 59.802 52.381 34.84 25.92 41.75 4.02
2155 2182 0.726827 CAACGTATGCTTGCCGTCAT 59.273 50.000 0.00 0.00 32.95 3.06
2198 2226 6.552008 TCTGGGTTTGGTTATTTCTTCAGAT 58.448 36.000 0.00 0.00 0.00 2.90
2293 2321 4.601857 TCCAAGTAGGAGTGGATTTTTCCT 59.398 41.667 0.00 0.00 43.07 3.36
2442 2756 6.367161 TCTGCATTTCATTGGGAGATAATCA 58.633 36.000 0.00 0.00 0.00 2.57
2690 3004 7.329471 CGTTCATCTTCATCAAAGAGTTACTCA 59.671 37.037 15.23 0.00 46.95 3.41
3170 3484 4.418392 CATCAAGGTATGCTGTTGCTTTC 58.582 43.478 0.00 0.00 40.48 2.62
3346 3662 5.685520 AGTTTTCCCTCTATTGTCCTCTC 57.314 43.478 0.00 0.00 0.00 3.20
3501 3818 9.797642 AAAATCTATCTATTGACACCATATGCA 57.202 29.630 0.00 0.00 0.00 3.96
3502 3819 9.445878 AAATCTATCTATTGACACCATATGCAG 57.554 33.333 0.00 0.00 0.00 4.41
3504 3821 7.381323 TCTATCTATTGACACCATATGCAGTG 58.619 38.462 9.72 9.72 39.93 3.66
3561 3882 5.246883 CCAATGGGAGTTTGAGAAGGAATTT 59.753 40.000 0.00 0.00 35.59 1.82
3673 3994 5.766590 TGATGAGGATAACTGGAGTGACTA 58.233 41.667 0.00 0.00 0.00 2.59
3674 3995 6.194967 TGATGAGGATAACTGGAGTGACTAA 58.805 40.000 0.00 0.00 0.00 2.24
3681 4004 7.894364 AGGATAACTGGAGTGACTAAGAACTTA 59.106 37.037 2.14 0.00 0.00 2.24
3715 4038 5.420421 TGAGGGAGAGAACTTATGAGTTGAG 59.580 44.000 7.73 0.00 45.88 3.02
3770 4095 5.009110 TGACACAAGTGATGCCGAAATAAAA 59.991 36.000 7.28 0.00 0.00 1.52
3777 4102 3.636300 TGATGCCGAAATAAAATCAGGGG 59.364 43.478 0.00 0.00 0.00 4.79
3782 4107 4.885325 GCCGAAATAAAATCAGGGGTCTTA 59.115 41.667 0.00 0.00 0.00 2.10
3820 4145 6.238538 CGAACCAGTAATTACTTGTGTTTGGT 60.239 38.462 19.82 17.00 33.13 3.67
3824 4149 7.013559 ACCAGTAATTACTTGTGTTTGGTTACC 59.986 37.037 18.74 0.00 31.80 2.85
3829 4154 4.230745 ACTTGTGTTTGGTTACCACTCT 57.769 40.909 2.39 0.00 30.78 3.24
3850 4299 6.892456 ACTCTGAGAGGATGTTGTACATTAGA 59.108 38.462 14.83 0.00 34.37 2.10
3912 4363 5.936372 CAGACATCATCACAAAAAGAGGAGA 59.064 40.000 0.00 0.00 0.00 3.71
3913 4364 6.092396 CAGACATCATCACAAAAAGAGGAGAG 59.908 42.308 0.00 0.00 0.00 3.20
3916 4367 6.876257 ACATCATCACAAAAAGAGGAGAGTAC 59.124 38.462 0.00 0.00 0.00 2.73
3953 4406 7.945664 TCACCCAACTGTTATTTATGTACCTTT 59.054 33.333 0.00 0.00 0.00 3.11
3998 4451 4.397103 TGTTTTATGCCTTCTCTGATGCTG 59.603 41.667 0.00 0.00 0.00 4.41
4028 4481 7.181361 TCCTGAAGGGAACAATGATGAAATTA 58.819 34.615 0.00 0.00 41.91 1.40
4029 4482 7.673504 TCCTGAAGGGAACAATGATGAAATTAA 59.326 33.333 0.00 0.00 41.91 1.40
4061 4514 6.440328 ACCAAATTACTATTGCCATTGGTCTT 59.560 34.615 4.26 0.00 44.08 3.01
4067 4555 6.455360 ACTATTGCCATTGGTCTTGTTATG 57.545 37.500 4.26 0.00 0.00 1.90
4111 4599 7.867909 CAGAAGACACATGAGTTCTACTGTTAA 59.132 37.037 0.00 0.00 0.00 2.01
4127 4615 8.935844 TCTACTGTTAAGTTTACATGATGCAAG 58.064 33.333 0.00 0.00 37.88 4.01
4176 4665 6.015180 GCAATGGCTCCTGATTTCCATTATTA 60.015 38.462 5.19 0.00 44.80 0.98
4214 4703 2.032799 TGCGACATTGTTCAGTTTGTCC 59.967 45.455 0.00 0.00 36.06 4.02
4289 4782 4.415881 TGTACATATGTGCCTTACAGGG 57.584 45.455 18.81 0.00 43.80 4.45
4365 4861 2.483188 CCCGCACTTATTCCAGACCTAC 60.483 54.545 0.00 0.00 0.00 3.18
4366 4862 2.483188 CCGCACTTATTCCAGACCTACC 60.483 54.545 0.00 0.00 0.00 3.18
4367 4863 2.167693 CGCACTTATTCCAGACCTACCA 59.832 50.000 0.00 0.00 0.00 3.25
4499 5108 7.202047 GGATCTGTTGGAGTTCCTAAGATACAT 60.202 40.741 12.08 0.00 37.52 2.29
4570 5179 3.505680 CCATTGAAAGGTTGAATCGGACA 59.494 43.478 0.00 0.00 0.00 4.02
4589 5198 6.649141 TCGGACAAACATACCATATATTGCTC 59.351 38.462 0.00 0.00 0.00 4.26
4651 5260 3.133003 GGATACATACGGATGATCCTGGG 59.867 52.174 16.36 0.00 37.10 4.45
4659 5268 4.776322 TGATCCTGGGTTGCGGCG 62.776 66.667 0.51 0.51 0.00 6.46
4664 5273 3.055719 CTGGGTTGCGGCGAACAT 61.056 61.111 12.98 0.00 0.00 2.71
4672 5281 2.414785 GCGGCGAACATTCCCCAAT 61.415 57.895 12.98 0.00 0.00 3.16
4673 5282 1.944234 GCGGCGAACATTCCCCAATT 61.944 55.000 12.98 0.00 0.00 2.32
4674 5283 0.179140 CGGCGAACATTCCCCAATTG 60.179 55.000 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.593945 AGGAGCCTTATTGATGATAACAAAAA 57.406 30.769 0.00 0.00 0.00 1.94
1 2 7.285401 GGAGGAGCCTTATTGATGATAACAAAA 59.715 37.037 0.00 0.00 0.00 2.44
2 3 6.772716 GGAGGAGCCTTATTGATGATAACAAA 59.227 38.462 0.00 0.00 0.00 2.83
3 4 6.299141 GGAGGAGCCTTATTGATGATAACAA 58.701 40.000 0.00 0.00 0.00 2.83
4 5 5.221925 GGGAGGAGCCTTATTGATGATAACA 60.222 44.000 0.00 0.00 36.66 2.41
5 6 5.221925 TGGGAGGAGCCTTATTGATGATAAC 60.222 44.000 0.00 0.00 36.66 1.89
6 7 4.913355 TGGGAGGAGCCTTATTGATGATAA 59.087 41.667 0.00 0.00 36.66 1.75
7 8 4.502415 TGGGAGGAGCCTTATTGATGATA 58.498 43.478 0.00 0.00 36.66 2.15
8 9 3.330110 CTGGGAGGAGCCTTATTGATGAT 59.670 47.826 0.00 0.00 36.66 2.45
9 10 2.707791 CTGGGAGGAGCCTTATTGATGA 59.292 50.000 0.00 0.00 36.66 2.92
10 11 2.441001 ACTGGGAGGAGCCTTATTGATG 59.559 50.000 0.00 0.00 36.66 3.07
11 12 2.441001 CACTGGGAGGAGCCTTATTGAT 59.559 50.000 0.00 0.00 36.66 2.57
12 13 1.839994 CACTGGGAGGAGCCTTATTGA 59.160 52.381 0.00 0.00 36.66 2.57
13 14 1.748591 GCACTGGGAGGAGCCTTATTG 60.749 57.143 0.00 0.00 36.66 1.90
14 15 0.548510 GCACTGGGAGGAGCCTTATT 59.451 55.000 0.00 0.00 36.66 1.40
15 16 0.327000 AGCACTGGGAGGAGCCTTAT 60.327 55.000 0.00 0.00 36.66 1.73
16 17 0.547712 AAGCACTGGGAGGAGCCTTA 60.548 55.000 0.00 0.00 36.66 2.69
17 18 1.846712 GAAGCACTGGGAGGAGCCTT 61.847 60.000 0.00 0.00 36.66 4.35
18 19 2.204059 AAGCACTGGGAGGAGCCT 60.204 61.111 0.00 0.00 36.66 4.58
19 20 2.270527 GAAGCACTGGGAGGAGCC 59.729 66.667 0.00 0.00 0.00 4.70
20 21 1.376553 GTGAAGCACTGGGAGGAGC 60.377 63.158 0.00 0.00 0.00 4.70
21 22 1.197430 AGGTGAAGCACTGGGAGGAG 61.197 60.000 0.00 0.00 34.40 3.69
22 23 0.768221 AAGGTGAAGCACTGGGAGGA 60.768 55.000 0.00 0.00 34.40 3.71
23 24 0.607489 CAAGGTGAAGCACTGGGAGG 60.607 60.000 0.00 0.00 34.40 4.30
24 25 0.109342 ACAAGGTGAAGCACTGGGAG 59.891 55.000 0.00 0.00 34.40 4.30
25 26 1.071699 GTACAAGGTGAAGCACTGGGA 59.928 52.381 0.00 0.00 34.40 4.37
26 27 1.202758 TGTACAAGGTGAAGCACTGGG 60.203 52.381 0.00 0.00 34.40 4.45
27 28 2.254546 TGTACAAGGTGAAGCACTGG 57.745 50.000 0.00 0.00 34.40 4.00
28 29 4.201851 GCATATGTACAAGGTGAAGCACTG 60.202 45.833 0.00 0.00 34.40 3.66
29 30 3.941483 GCATATGTACAAGGTGAAGCACT 59.059 43.478 0.00 0.00 34.40 4.40
30 31 3.941483 AGCATATGTACAAGGTGAAGCAC 59.059 43.478 0.00 0.00 0.00 4.40
31 32 4.220693 AGCATATGTACAAGGTGAAGCA 57.779 40.909 0.00 0.00 0.00 3.91
32 33 5.817816 ACTTAGCATATGTACAAGGTGAAGC 59.182 40.000 0.00 0.00 0.00 3.86
33 34 7.268586 AGACTTAGCATATGTACAAGGTGAAG 58.731 38.462 0.00 2.68 0.00 3.02
34 35 7.182817 AGACTTAGCATATGTACAAGGTGAA 57.817 36.000 0.00 0.00 0.00 3.18
35 36 6.791867 AGACTTAGCATATGTACAAGGTGA 57.208 37.500 0.00 0.00 0.00 4.02
36 37 6.480320 GGAAGACTTAGCATATGTACAAGGTG 59.520 42.308 0.00 0.16 0.00 4.00
37 38 6.156256 TGGAAGACTTAGCATATGTACAAGGT 59.844 38.462 0.00 1.33 0.00 3.50
38 39 6.582636 TGGAAGACTTAGCATATGTACAAGG 58.417 40.000 0.00 0.00 0.00 3.61
39 40 6.703607 CCTGGAAGACTTAGCATATGTACAAG 59.296 42.308 0.00 7.84 34.07 3.16
40 41 6.156256 ACCTGGAAGACTTAGCATATGTACAA 59.844 38.462 0.00 0.00 34.07 2.41
41 42 5.661312 ACCTGGAAGACTTAGCATATGTACA 59.339 40.000 0.00 0.00 34.07 2.90
42 43 6.163135 ACCTGGAAGACTTAGCATATGTAC 57.837 41.667 0.00 0.00 34.07 2.90
43 44 6.493802 CCTACCTGGAAGACTTAGCATATGTA 59.506 42.308 0.00 0.00 38.35 2.29
44 45 5.305644 CCTACCTGGAAGACTTAGCATATGT 59.694 44.000 0.00 0.00 38.35 2.29
45 46 5.305644 ACCTACCTGGAAGACTTAGCATATG 59.694 44.000 0.00 0.00 39.71 1.78
46 47 5.468658 ACCTACCTGGAAGACTTAGCATAT 58.531 41.667 0.00 0.00 39.71 1.78
47 48 4.880164 ACCTACCTGGAAGACTTAGCATA 58.120 43.478 0.00 0.00 39.71 3.14
48 49 3.725634 ACCTACCTGGAAGACTTAGCAT 58.274 45.455 0.00 0.00 39.71 3.79
49 50 3.185880 ACCTACCTGGAAGACTTAGCA 57.814 47.619 0.00 0.00 39.71 3.49
50 51 5.672421 TTTACCTACCTGGAAGACTTAGC 57.328 43.478 0.00 0.00 39.71 3.09
81 82 9.720769 CTCTCTCCTTTTAAATAACTTACCACA 57.279 33.333 0.00 0.00 0.00 4.17
82 83 9.939802 TCTCTCTCCTTTTAAATAACTTACCAC 57.060 33.333 0.00 0.00 0.00 4.16
88 89 9.883142 CACTCATCTCTCTCCTTTTAAATAACT 57.117 33.333 0.00 0.00 0.00 2.24
89 90 9.660180 ACACTCATCTCTCTCCTTTTAAATAAC 57.340 33.333 0.00 0.00 0.00 1.89
92 93 9.041354 ACTACACTCATCTCTCTCCTTTTAAAT 57.959 33.333 0.00 0.00 0.00 1.40
93 94 8.423906 ACTACACTCATCTCTCTCCTTTTAAA 57.576 34.615 0.00 0.00 0.00 1.52
94 95 9.529823 TTACTACACTCATCTCTCTCCTTTTAA 57.470 33.333 0.00 0.00 0.00 1.52
95 96 8.958506 GTTACTACACTCATCTCTCTCCTTTTA 58.041 37.037 0.00 0.00 0.00 1.52
96 97 7.093684 GGTTACTACACTCATCTCTCTCCTTTT 60.094 40.741 0.00 0.00 0.00 2.27
97 98 6.378848 GGTTACTACACTCATCTCTCTCCTTT 59.621 42.308 0.00 0.00 0.00 3.11
98 99 5.889289 GGTTACTACACTCATCTCTCTCCTT 59.111 44.000 0.00 0.00 0.00 3.36
99 100 5.442391 GGTTACTACACTCATCTCTCTCCT 58.558 45.833 0.00 0.00 0.00 3.69
100 101 4.581409 GGGTTACTACACTCATCTCTCTCC 59.419 50.000 0.00 0.00 0.00 3.71
101 102 4.581409 GGGGTTACTACACTCATCTCTCTC 59.419 50.000 0.00 0.00 0.00 3.20
102 103 4.017407 TGGGGTTACTACACTCATCTCTCT 60.017 45.833 0.00 0.00 0.00 3.10
103 104 4.098196 GTGGGGTTACTACACTCATCTCTC 59.902 50.000 3.54 0.00 32.58 3.20
104 105 4.024670 GTGGGGTTACTACACTCATCTCT 58.975 47.826 3.54 0.00 32.58 3.10
105 106 3.767673 TGTGGGGTTACTACACTCATCTC 59.232 47.826 10.16 0.00 36.16 2.75
106 107 3.786553 TGTGGGGTTACTACACTCATCT 58.213 45.455 10.16 0.00 36.16 2.90
107 108 4.222145 TCTTGTGGGGTTACTACACTCATC 59.778 45.833 10.16 0.00 36.16 2.92
108 109 4.164981 TCTTGTGGGGTTACTACACTCAT 58.835 43.478 10.16 0.00 36.16 2.90
109 110 3.578978 TCTTGTGGGGTTACTACACTCA 58.421 45.455 10.16 0.00 36.16 3.41
110 111 4.612264 TTCTTGTGGGGTTACTACACTC 57.388 45.455 10.16 0.00 36.16 3.51
111 112 4.164604 TGTTTCTTGTGGGGTTACTACACT 59.835 41.667 10.16 0.00 36.16 3.55
112 113 4.453751 TGTTTCTTGTGGGGTTACTACAC 58.546 43.478 3.75 3.75 35.75 2.90
113 114 4.774660 TGTTTCTTGTGGGGTTACTACA 57.225 40.909 0.00 0.00 0.00 2.74
114 115 5.564063 GCATTGTTTCTTGTGGGGTTACTAC 60.564 44.000 0.00 0.00 0.00 2.73
115 116 4.521256 GCATTGTTTCTTGTGGGGTTACTA 59.479 41.667 0.00 0.00 0.00 1.82
116 117 3.320826 GCATTGTTTCTTGTGGGGTTACT 59.679 43.478 0.00 0.00 0.00 2.24
117 118 3.320826 AGCATTGTTTCTTGTGGGGTTAC 59.679 43.478 0.00 0.00 0.00 2.50
118 119 3.571590 AGCATTGTTTCTTGTGGGGTTA 58.428 40.909 0.00 0.00 0.00 2.85
119 120 2.397597 AGCATTGTTTCTTGTGGGGTT 58.602 42.857 0.00 0.00 0.00 4.11
120 121 2.086610 AGCATTGTTTCTTGTGGGGT 57.913 45.000 0.00 0.00 0.00 4.95
121 122 3.614870 GCTTAGCATTGTTTCTTGTGGGG 60.615 47.826 0.00 0.00 0.00 4.96
122 123 3.578688 GCTTAGCATTGTTTCTTGTGGG 58.421 45.455 0.00 0.00 0.00 4.61
123 124 3.236816 CGCTTAGCATTGTTTCTTGTGG 58.763 45.455 4.70 0.00 0.00 4.17
137 138 1.146358 CCTAGGTTCACGCGCTTAGC 61.146 60.000 5.73 0.23 43.95 3.09
138 139 1.146358 GCCTAGGTTCACGCGCTTAG 61.146 60.000 11.31 0.00 0.00 2.18
139 140 1.153706 GCCTAGGTTCACGCGCTTA 60.154 57.895 11.31 0.00 0.00 3.09
140 141 2.434359 GCCTAGGTTCACGCGCTT 60.434 61.111 11.31 0.00 0.00 4.68
141 142 2.725203 TTTGCCTAGGTTCACGCGCT 62.725 55.000 11.31 0.00 0.00 5.92
142 143 1.847890 TTTTGCCTAGGTTCACGCGC 61.848 55.000 11.31 0.00 0.00 6.86
143 144 0.110373 GTTTTGCCTAGGTTCACGCG 60.110 55.000 11.31 3.53 0.00 6.01
144 145 0.948678 TGTTTTGCCTAGGTTCACGC 59.051 50.000 11.31 0.00 0.00 5.34
145 146 3.915437 AATGTTTTGCCTAGGTTCACG 57.085 42.857 11.31 0.00 0.00 4.35
146 147 8.426881 TTTTTAAATGTTTTGCCTAGGTTCAC 57.573 30.769 11.31 3.25 0.00 3.18
168 169 3.582164 TGTATTGGTGGGCTTCCTTTTT 58.418 40.909 0.00 0.00 0.00 1.94
169 170 3.252554 TGTATTGGTGGGCTTCCTTTT 57.747 42.857 0.00 0.00 0.00 2.27
170 171 2.990740 TGTATTGGTGGGCTTCCTTT 57.009 45.000 0.00 0.00 0.00 3.11
171 172 2.311542 TCATGTATTGGTGGGCTTCCTT 59.688 45.455 0.00 0.00 0.00 3.36
172 173 1.922447 TCATGTATTGGTGGGCTTCCT 59.078 47.619 0.00 0.00 0.00 3.36
173 174 2.435372 TCATGTATTGGTGGGCTTCC 57.565 50.000 0.00 0.00 0.00 3.46
174 175 3.620488 TCTTCATGTATTGGTGGGCTTC 58.380 45.455 0.00 0.00 0.00 3.86
175 176 3.624777 CTCTTCATGTATTGGTGGGCTT 58.375 45.455 0.00 0.00 0.00 4.35
176 177 2.684927 GCTCTTCATGTATTGGTGGGCT 60.685 50.000 0.00 0.00 0.00 5.19
177 178 1.678101 GCTCTTCATGTATTGGTGGGC 59.322 52.381 0.00 0.00 0.00 5.36
178 179 3.287867 AGCTCTTCATGTATTGGTGGG 57.712 47.619 0.00 0.00 0.00 4.61
179 180 5.882557 ACTAAAGCTCTTCATGTATTGGTGG 59.117 40.000 0.00 0.00 0.00 4.61
180 181 6.992063 ACTAAAGCTCTTCATGTATTGGTG 57.008 37.500 0.00 0.00 0.00 4.17
181 182 6.127897 GCAACTAAAGCTCTTCATGTATTGGT 60.128 38.462 0.00 0.00 0.00 3.67
182 183 6.094603 AGCAACTAAAGCTCTTCATGTATTGG 59.905 38.462 0.00 0.00 38.01 3.16
183 184 7.081526 AGCAACTAAAGCTCTTCATGTATTG 57.918 36.000 0.00 0.00 38.01 1.90
184 185 8.792830 TTAGCAACTAAAGCTCTTCATGTATT 57.207 30.769 0.00 0.00 42.32 1.89
185 186 8.792830 TTTAGCAACTAAAGCTCTTCATGTAT 57.207 30.769 0.00 0.00 42.32 2.29
186 187 8.792830 ATTTAGCAACTAAAGCTCTTCATGTA 57.207 30.769 6.04 0.00 42.32 2.29
187 188 7.391554 TGATTTAGCAACTAAAGCTCTTCATGT 59.608 33.333 14.32 0.00 41.23 3.21
188 189 7.755591 TGATTTAGCAACTAAAGCTCTTCATG 58.244 34.615 14.32 0.00 41.23 3.07
189 190 7.928307 TGATTTAGCAACTAAAGCTCTTCAT 57.072 32.000 14.32 0.00 41.23 2.57
190 191 7.928307 ATGATTTAGCAACTAAAGCTCTTCA 57.072 32.000 14.32 8.95 41.23 3.02
202 203 8.909671 GCTTGCTTCATATAATGATTTAGCAAC 58.090 33.333 17.33 12.85 46.95 4.17
204 205 8.400184 AGCTTGCTTCATATAATGATTTAGCA 57.600 30.769 9.56 9.56 44.44 3.49
208 209 8.853126 TGCTAAGCTTGCTTCATATAATGATTT 58.147 29.630 9.86 0.00 39.39 2.17
209 210 8.400184 TGCTAAGCTTGCTTCATATAATGATT 57.600 30.769 9.86 0.00 39.39 2.57
210 211 7.991084 TGCTAAGCTTGCTTCATATAATGAT 57.009 32.000 9.86 0.00 39.39 2.45
211 212 7.255242 GGTTGCTAAGCTTGCTTCATATAATGA 60.255 37.037 9.86 0.00 37.55 2.57
212 213 6.860023 GGTTGCTAAGCTTGCTTCATATAATG 59.140 38.462 9.86 0.00 0.00 1.90
213 214 6.547141 TGGTTGCTAAGCTTGCTTCATATAAT 59.453 34.615 9.86 0.00 0.00 1.28
214 215 5.885352 TGGTTGCTAAGCTTGCTTCATATAA 59.115 36.000 9.86 0.00 0.00 0.98
215 216 5.436175 TGGTTGCTAAGCTTGCTTCATATA 58.564 37.500 9.86 0.00 0.00 0.86
216 217 4.272489 TGGTTGCTAAGCTTGCTTCATAT 58.728 39.130 9.86 0.00 0.00 1.78
217 218 3.684908 TGGTTGCTAAGCTTGCTTCATA 58.315 40.909 9.86 0.00 0.00 2.15
218 219 2.517959 TGGTTGCTAAGCTTGCTTCAT 58.482 42.857 9.86 0.00 0.00 2.57
219 220 1.979855 TGGTTGCTAAGCTTGCTTCA 58.020 45.000 9.86 2.06 0.00 3.02
220 221 4.666237 CTTATGGTTGCTAAGCTTGCTTC 58.334 43.478 9.86 7.94 0.00 3.86
221 222 3.119352 GCTTATGGTTGCTAAGCTTGCTT 60.119 43.478 9.86 12.65 44.88 3.91
222 223 2.424956 GCTTATGGTTGCTAAGCTTGCT 59.575 45.455 9.86 0.00 44.88 3.91
223 224 2.802256 GCTTATGGTTGCTAAGCTTGC 58.198 47.619 9.86 11.34 44.88 4.01
229 230 3.945285 GGTGCTTAGCTTATGGTTGCTAA 59.055 43.478 5.60 7.14 45.78 3.09
230 231 3.199946 AGGTGCTTAGCTTATGGTTGCTA 59.800 43.478 5.60 0.00 40.35 3.49
231 232 2.025887 AGGTGCTTAGCTTATGGTTGCT 60.026 45.455 5.60 0.00 42.67 3.91
232 233 2.369394 AGGTGCTTAGCTTATGGTTGC 58.631 47.619 5.60 0.00 0.00 4.17
233 234 5.679734 CATAGGTGCTTAGCTTATGGTTG 57.320 43.478 5.60 0.00 0.00 3.77
248 249 6.352016 ACTATACTCCTCAATGCATAGGTG 57.648 41.667 14.01 13.81 34.30 4.00
249 250 6.554982 TCAACTATACTCCTCAATGCATAGGT 59.445 38.462 14.01 0.58 34.30 3.08
250 251 6.997655 TCAACTATACTCCTCAATGCATAGG 58.002 40.000 8.99 8.99 0.00 2.57
253 254 7.605691 GCTTATCAACTATACTCCTCAATGCAT 59.394 37.037 0.00 0.00 0.00 3.96
254 255 6.931281 GCTTATCAACTATACTCCTCAATGCA 59.069 38.462 0.00 0.00 0.00 3.96
255 256 7.158021 AGCTTATCAACTATACTCCTCAATGC 58.842 38.462 0.00 0.00 0.00 3.56
259 260 9.815306 AGAATAGCTTATCAACTATACTCCTCA 57.185 33.333 0.00 0.00 0.00 3.86
267 268 8.097662 GGGTGCTTAGAATAGCTTATCAACTAT 58.902 37.037 0.00 0.00 41.76 2.12
268 269 7.070696 TGGGTGCTTAGAATAGCTTATCAACTA 59.929 37.037 0.00 0.00 41.76 2.24
269 270 6.126768 TGGGTGCTTAGAATAGCTTATCAACT 60.127 38.462 0.00 0.00 41.76 3.16
270 271 6.055588 TGGGTGCTTAGAATAGCTTATCAAC 58.944 40.000 0.00 0.00 41.76 3.18
271 272 6.247229 TGGGTGCTTAGAATAGCTTATCAA 57.753 37.500 0.00 0.00 41.76 2.57
272 273 5.887214 TGGGTGCTTAGAATAGCTTATCA 57.113 39.130 0.00 0.00 41.76 2.15
273 274 7.386851 TGTATGGGTGCTTAGAATAGCTTATC 58.613 38.462 0.00 0.00 41.76 1.75
274 275 7.316393 TGTATGGGTGCTTAGAATAGCTTAT 57.684 36.000 0.00 0.00 41.76 1.73
275 276 6.740944 TGTATGGGTGCTTAGAATAGCTTA 57.259 37.500 0.00 0.00 41.76 3.09
276 277 5.630415 TGTATGGGTGCTTAGAATAGCTT 57.370 39.130 0.00 0.00 41.76 3.74
277 278 5.832539 ATGTATGGGTGCTTAGAATAGCT 57.167 39.130 0.00 0.00 41.76 3.32
278 279 6.092807 GCTAATGTATGGGTGCTTAGAATAGC 59.907 42.308 0.00 0.00 41.59 2.97
279 280 7.161404 TGCTAATGTATGGGTGCTTAGAATAG 58.839 38.462 0.00 0.00 0.00 1.73
280 281 7.073457 TGCTAATGTATGGGTGCTTAGAATA 57.927 36.000 0.00 0.00 0.00 1.75
281 282 5.940617 TGCTAATGTATGGGTGCTTAGAAT 58.059 37.500 0.00 0.00 0.00 2.40
282 283 5.366482 TGCTAATGTATGGGTGCTTAGAA 57.634 39.130 0.00 0.00 0.00 2.10
283 284 5.123227 GTTGCTAATGTATGGGTGCTTAGA 58.877 41.667 0.00 0.00 0.00 2.10
284 285 4.881273 TGTTGCTAATGTATGGGTGCTTAG 59.119 41.667 0.00 0.00 0.00 2.18
285 286 4.849518 TGTTGCTAATGTATGGGTGCTTA 58.150 39.130 0.00 0.00 0.00 3.09
286 287 3.696045 TGTTGCTAATGTATGGGTGCTT 58.304 40.909 0.00 0.00 0.00 3.91
287 288 3.282021 CTGTTGCTAATGTATGGGTGCT 58.718 45.455 0.00 0.00 0.00 4.40
288 289 2.223572 GCTGTTGCTAATGTATGGGTGC 60.224 50.000 0.00 0.00 36.03 5.01
289 290 2.358898 GGCTGTTGCTAATGTATGGGTG 59.641 50.000 0.00 0.00 39.59 4.61
290 291 2.242196 AGGCTGTTGCTAATGTATGGGT 59.758 45.455 0.00 0.00 39.59 4.51
291 292 2.936202 AGGCTGTTGCTAATGTATGGG 58.064 47.619 0.00 0.00 39.59 4.00
292 293 5.822519 TCTTTAGGCTGTTGCTAATGTATGG 59.177 40.000 0.00 0.00 39.59 2.74
293 294 6.925610 TCTTTAGGCTGTTGCTAATGTATG 57.074 37.500 0.00 0.00 39.59 2.39
294 295 6.884295 TGTTCTTTAGGCTGTTGCTAATGTAT 59.116 34.615 0.00 0.00 39.59 2.29
295 296 6.148811 GTGTTCTTTAGGCTGTTGCTAATGTA 59.851 38.462 0.00 0.00 39.59 2.29
296 297 5.048713 GTGTTCTTTAGGCTGTTGCTAATGT 60.049 40.000 0.00 0.00 39.59 2.71
297 298 5.048782 TGTGTTCTTTAGGCTGTTGCTAATG 60.049 40.000 0.00 0.00 39.59 1.90
298 299 5.048713 GTGTGTTCTTTAGGCTGTTGCTAAT 60.049 40.000 0.00 0.00 39.59 1.73
299 300 4.274950 GTGTGTTCTTTAGGCTGTTGCTAA 59.725 41.667 0.00 0.00 39.59 3.09
300 301 3.813166 GTGTGTTCTTTAGGCTGTTGCTA 59.187 43.478 0.00 0.00 39.59 3.49
301 302 2.618709 GTGTGTTCTTTAGGCTGTTGCT 59.381 45.455 0.00 0.00 39.59 3.91
302 303 2.618709 AGTGTGTTCTTTAGGCTGTTGC 59.381 45.455 0.00 0.00 38.76 4.17
303 304 3.876914 TGAGTGTGTTCTTTAGGCTGTTG 59.123 43.478 0.00 0.00 0.00 3.33
304 305 4.150897 TGAGTGTGTTCTTTAGGCTGTT 57.849 40.909 0.00 0.00 0.00 3.16
305 306 3.838244 TGAGTGTGTTCTTTAGGCTGT 57.162 42.857 0.00 0.00 0.00 4.40
306 307 4.154918 GGATTGAGTGTGTTCTTTAGGCTG 59.845 45.833 0.00 0.00 0.00 4.85
307 308 4.202461 TGGATTGAGTGTGTTCTTTAGGCT 60.202 41.667 0.00 0.00 0.00 4.58
308 309 4.072131 TGGATTGAGTGTGTTCTTTAGGC 58.928 43.478 0.00 0.00 0.00 3.93
309 310 6.176183 AGATGGATTGAGTGTGTTCTTTAGG 58.824 40.000 0.00 0.00 0.00 2.69
310 311 8.954950 ATAGATGGATTGAGTGTGTTCTTTAG 57.045 34.615 0.00 0.00 0.00 1.85
311 312 9.739276 AAATAGATGGATTGAGTGTGTTCTTTA 57.261 29.630 0.00 0.00 0.00 1.85
312 313 8.641498 AAATAGATGGATTGAGTGTGTTCTTT 57.359 30.769 0.00 0.00 0.00 2.52
313 314 8.641498 AAAATAGATGGATTGAGTGTGTTCTT 57.359 30.769 0.00 0.00 0.00 2.52
314 315 8.517878 CAAAAATAGATGGATTGAGTGTGTTCT 58.482 33.333 0.00 0.00 0.00 3.01
315 316 8.299570 ACAAAAATAGATGGATTGAGTGTGTTC 58.700 33.333 0.00 0.00 0.00 3.18
316 317 8.181904 ACAAAAATAGATGGATTGAGTGTGTT 57.818 30.769 0.00 0.00 0.00 3.32
317 318 7.765695 ACAAAAATAGATGGATTGAGTGTGT 57.234 32.000 0.00 0.00 0.00 3.72
318 319 9.559958 GTAACAAAAATAGATGGATTGAGTGTG 57.440 33.333 0.00 0.00 0.00 3.82
319 320 9.520515 AGTAACAAAAATAGATGGATTGAGTGT 57.479 29.630 0.00 0.00 0.00 3.55
332 333 9.478019 CGAGCATTGTTCTAGTAACAAAAATAG 57.522 33.333 18.18 10.37 42.57 1.73
333 334 8.995220 ACGAGCATTGTTCTAGTAACAAAAATA 58.005 29.630 18.18 3.21 42.57 1.40
334 335 7.871853 ACGAGCATTGTTCTAGTAACAAAAAT 58.128 30.769 18.18 10.58 42.57 1.82
335 336 7.254227 ACGAGCATTGTTCTAGTAACAAAAA 57.746 32.000 18.18 3.74 42.57 1.94
336 337 6.854496 ACGAGCATTGTTCTAGTAACAAAA 57.146 33.333 18.18 4.26 42.57 2.44
337 338 6.854496 AACGAGCATTGTTCTAGTAACAAA 57.146 33.333 18.18 7.78 38.69 2.83
357 358 4.804608 TTATATCCCGTTGCAATGAACG 57.195 40.909 20.36 10.98 46.62 3.95
358 359 9.341899 GAATATTTATATCCCGTTGCAATGAAC 57.658 33.333 20.36 0.00 0.00 3.18
359 360 9.295825 AGAATATTTATATCCCGTTGCAATGAA 57.704 29.630 20.36 8.10 0.00 2.57
360 361 8.862325 AGAATATTTATATCCCGTTGCAATGA 57.138 30.769 20.36 9.30 0.00 2.57
382 383 9.090692 GGTAAATCACAAGCTAACGTAATAGAA 57.909 33.333 0.00 0.00 0.00 2.10
383 384 8.472413 AGGTAAATCACAAGCTAACGTAATAGA 58.528 33.333 0.00 0.00 0.00 1.98
384 385 8.540492 CAGGTAAATCACAAGCTAACGTAATAG 58.460 37.037 0.00 0.00 0.00 1.73
385 386 8.036575 ACAGGTAAATCACAAGCTAACGTAATA 58.963 33.333 0.00 0.00 0.00 0.98
386 387 6.877322 ACAGGTAAATCACAAGCTAACGTAAT 59.123 34.615 0.00 0.00 0.00 1.89
387 388 6.225318 ACAGGTAAATCACAAGCTAACGTAA 58.775 36.000 0.00 0.00 0.00 3.18
388 389 5.786311 ACAGGTAAATCACAAGCTAACGTA 58.214 37.500 0.00 0.00 0.00 3.57
389 390 4.638304 ACAGGTAAATCACAAGCTAACGT 58.362 39.130 0.00 0.00 0.00 3.99
390 391 4.688879 TGACAGGTAAATCACAAGCTAACG 59.311 41.667 0.00 0.00 0.00 3.18
391 392 6.554334 TTGACAGGTAAATCACAAGCTAAC 57.446 37.500 0.00 0.00 0.00 2.34
392 393 8.856153 TTATTGACAGGTAAATCACAAGCTAA 57.144 30.769 0.00 0.00 0.00 3.09
394 395 7.944729 ATTATTGACAGGTAAATCACAAGCT 57.055 32.000 0.00 0.00 0.00 3.74
398 399 9.183368 TGCATTATTATTGACAGGTAAATCACA 57.817 29.630 0.00 0.00 0.00 3.58
404 405 9.800433 CACAATTGCATTATTATTGACAGGTAA 57.200 29.630 13.60 0.00 34.28 2.85
405 406 8.965819 ACACAATTGCATTATTATTGACAGGTA 58.034 29.630 13.60 0.00 34.28 3.08
406 407 7.839907 ACACAATTGCATTATTATTGACAGGT 58.160 30.769 13.60 4.98 34.28 4.00
407 408 9.800433 TTACACAATTGCATTATTATTGACAGG 57.200 29.630 13.60 4.49 34.28 4.00
421 422 9.702494 TGATGAACATTTATTTACACAATTGCA 57.298 25.926 5.05 0.00 0.00 4.08
432 433 9.357652 CGGTCAGAATTTGATGAACATTTATTT 57.642 29.630 5.49 0.00 38.29 1.40
433 434 8.522830 ACGGTCAGAATTTGATGAACATTTATT 58.477 29.630 5.49 0.00 38.29 1.40
434 435 7.970061 CACGGTCAGAATTTGATGAACATTTAT 59.030 33.333 5.49 0.00 38.29 1.40
435 436 7.174080 TCACGGTCAGAATTTGATGAACATTTA 59.826 33.333 5.49 0.00 38.29 1.40
436 437 6.016360 TCACGGTCAGAATTTGATGAACATTT 60.016 34.615 5.49 0.00 38.29 2.32
437 438 5.473162 TCACGGTCAGAATTTGATGAACATT 59.527 36.000 5.49 0.00 38.29 2.71
438 439 5.003160 TCACGGTCAGAATTTGATGAACAT 58.997 37.500 5.49 0.00 38.29 2.71
439 440 4.384940 TCACGGTCAGAATTTGATGAACA 58.615 39.130 5.49 0.00 38.29 3.18
440 441 5.356882 TTCACGGTCAGAATTTGATGAAC 57.643 39.130 0.00 0.00 38.29 3.18
441 442 6.573664 AATTCACGGTCAGAATTTGATGAA 57.426 33.333 1.75 0.00 41.54 2.57
442 443 6.093495 GGTAATTCACGGTCAGAATTTGATGA 59.907 38.462 10.52 0.00 41.54 2.92
443 444 6.094048 AGGTAATTCACGGTCAGAATTTGATG 59.906 38.462 10.52 0.00 41.54 3.07
444 445 6.180472 AGGTAATTCACGGTCAGAATTTGAT 58.820 36.000 10.52 0.00 41.54 2.57
445 446 5.556915 AGGTAATTCACGGTCAGAATTTGA 58.443 37.500 10.52 0.00 41.54 2.69
446 447 5.880054 AGGTAATTCACGGTCAGAATTTG 57.120 39.130 10.52 0.00 41.54 2.32
447 448 9.847224 ATATAAGGTAATTCACGGTCAGAATTT 57.153 29.630 10.52 0.00 41.54 1.82
448 449 9.847224 AATATAAGGTAATTCACGGTCAGAATT 57.153 29.630 10.22 10.22 45.05 2.17
449 450 9.847224 AAATATAAGGTAATTCACGGTCAGAAT 57.153 29.630 0.00 0.00 37.30 2.40
450 451 9.675464 AAAATATAAGGTAATTCACGGTCAGAA 57.325 29.630 0.00 0.00 0.00 3.02
451 452 9.104965 CAAAATATAAGGTAATTCACGGTCAGA 57.895 33.333 0.00 0.00 0.00 3.27
452 453 9.104965 TCAAAATATAAGGTAATTCACGGTCAG 57.895 33.333 0.00 0.00 0.00 3.51
453 454 9.621629 ATCAAAATATAAGGTAATTCACGGTCA 57.378 29.630 0.00 0.00 0.00 4.02
496 497 9.586435 CCTTCTGAACAAATTTCACTTTACTTT 57.414 29.630 0.00 0.00 0.00 2.66
497 498 8.749354 ACCTTCTGAACAAATTTCACTTTACTT 58.251 29.630 0.00 0.00 0.00 2.24
498 499 8.293699 ACCTTCTGAACAAATTTCACTTTACT 57.706 30.769 0.00 0.00 0.00 2.24
501 502 8.749354 ACTTACCTTCTGAACAAATTTCACTTT 58.251 29.630 0.00 0.00 0.00 2.66
502 503 8.293699 ACTTACCTTCTGAACAAATTTCACTT 57.706 30.769 0.00 0.00 0.00 3.16
503 504 7.881775 ACTTACCTTCTGAACAAATTTCACT 57.118 32.000 0.00 0.00 0.00 3.41
548 549 9.184523 CCTTTTGTCCAACCTTCAATGTATATA 57.815 33.333 0.00 0.00 0.00 0.86
549 550 7.673926 ACCTTTTGTCCAACCTTCAATGTATAT 59.326 33.333 0.00 0.00 0.00 0.86
550 551 7.007723 ACCTTTTGTCCAACCTTCAATGTATA 58.992 34.615 0.00 0.00 0.00 1.47
551 552 5.838521 ACCTTTTGTCCAACCTTCAATGTAT 59.161 36.000 0.00 0.00 0.00 2.29
552 553 5.068460 CACCTTTTGTCCAACCTTCAATGTA 59.932 40.000 0.00 0.00 0.00 2.29
553 554 4.030216 ACCTTTTGTCCAACCTTCAATGT 58.970 39.130 0.00 0.00 0.00 2.71
554 555 4.370917 CACCTTTTGTCCAACCTTCAATG 58.629 43.478 0.00 0.00 0.00 2.82
555 556 3.387699 CCACCTTTTGTCCAACCTTCAAT 59.612 43.478 0.00 0.00 0.00 2.57
556 557 2.763448 CCACCTTTTGTCCAACCTTCAA 59.237 45.455 0.00 0.00 0.00 2.69
557 558 2.291930 ACCACCTTTTGTCCAACCTTCA 60.292 45.455 0.00 0.00 0.00 3.02
558 559 2.384828 ACCACCTTTTGTCCAACCTTC 58.615 47.619 0.00 0.00 0.00 3.46
559 560 2.543037 ACCACCTTTTGTCCAACCTT 57.457 45.000 0.00 0.00 0.00 3.50
560 561 3.203487 TCTTACCACCTTTTGTCCAACCT 59.797 43.478 0.00 0.00 0.00 3.50
561 562 3.558033 TCTTACCACCTTTTGTCCAACC 58.442 45.455 0.00 0.00 0.00 3.77
562 563 4.885325 TCTTCTTACCACCTTTTGTCCAAC 59.115 41.667 0.00 0.00 0.00 3.77
563 564 5.118729 TCTTCTTACCACCTTTTGTCCAA 57.881 39.130 0.00 0.00 0.00 3.53
564 565 4.781775 TCTTCTTACCACCTTTTGTCCA 57.218 40.909 0.00 0.00 0.00 4.02
565 566 5.009710 CCTTTCTTCTTACCACCTTTTGTCC 59.990 44.000 0.00 0.00 0.00 4.02
566 567 5.593095 ACCTTTCTTCTTACCACCTTTTGTC 59.407 40.000 0.00 0.00 0.00 3.18
567 568 5.359860 CACCTTTCTTCTTACCACCTTTTGT 59.640 40.000 0.00 0.00 0.00 2.83
568 569 5.592688 TCACCTTTCTTCTTACCACCTTTTG 59.407 40.000 0.00 0.00 0.00 2.44
569 570 5.762279 TCACCTTTCTTCTTACCACCTTTT 58.238 37.500 0.00 0.00 0.00 2.27
570 571 5.382664 TCACCTTTCTTCTTACCACCTTT 57.617 39.130 0.00 0.00 0.00 3.11
571 572 5.382664 TTCACCTTTCTTCTTACCACCTT 57.617 39.130 0.00 0.00 0.00 3.50
572 573 5.131067 GTTTCACCTTTCTTCTTACCACCT 58.869 41.667 0.00 0.00 0.00 4.00
573 574 4.024302 CGTTTCACCTTTCTTCTTACCACC 60.024 45.833 0.00 0.00 0.00 4.61
574 575 4.024302 CCGTTTCACCTTTCTTCTTACCAC 60.024 45.833 0.00 0.00 0.00 4.16
575 576 4.131596 CCGTTTCACCTTTCTTCTTACCA 58.868 43.478 0.00 0.00 0.00 3.25
576 577 3.501062 CCCGTTTCACCTTTCTTCTTACC 59.499 47.826 0.00 0.00 0.00 2.85
577 578 4.383173 TCCCGTTTCACCTTTCTTCTTAC 58.617 43.478 0.00 0.00 0.00 2.34
578 579 4.693042 TCCCGTTTCACCTTTCTTCTTA 57.307 40.909 0.00 0.00 0.00 2.10
579 580 3.570912 TCCCGTTTCACCTTTCTTCTT 57.429 42.857 0.00 0.00 0.00 2.52
580 581 3.211865 GTTCCCGTTTCACCTTTCTTCT 58.788 45.455 0.00 0.00 0.00 2.85
581 582 2.292569 GGTTCCCGTTTCACCTTTCTTC 59.707 50.000 0.00 0.00 0.00 2.87
582 583 2.092049 AGGTTCCCGTTTCACCTTTCTT 60.092 45.455 0.00 0.00 37.70 2.52
583 584 1.493446 AGGTTCCCGTTTCACCTTTCT 59.507 47.619 0.00 0.00 37.70 2.52
584 585 1.977056 AGGTTCCCGTTTCACCTTTC 58.023 50.000 0.00 0.00 37.70 2.62
585 586 2.447408 AAGGTTCCCGTTTCACCTTT 57.553 45.000 0.00 0.00 46.85 3.11
587 588 2.374170 ACATAAGGTTCCCGTTTCACCT 59.626 45.455 0.00 0.00 43.17 4.00
588 589 2.786777 ACATAAGGTTCCCGTTTCACC 58.213 47.619 0.00 0.00 0.00 4.02
643 644 9.586435 CCTTCTGAACAAATTTCACTTTACTTT 57.414 29.630 0.00 0.00 0.00 2.66
644 645 8.749354 ACCTTCTGAACAAATTTCACTTTACTT 58.251 29.630 0.00 0.00 0.00 2.24
645 646 8.293699 ACCTTCTGAACAAATTTCACTTTACT 57.706 30.769 0.00 0.00 0.00 2.24
648 649 8.749354 ACTTACCTTCTGAACAAATTTCACTTT 58.251 29.630 0.00 0.00 0.00 2.66
649 650 8.293699 ACTTACCTTCTGAACAAATTTCACTT 57.706 30.769 0.00 0.00 0.00 3.16
650 651 7.881775 ACTTACCTTCTGAACAAATTTCACT 57.118 32.000 0.00 0.00 0.00 3.41
659 660 9.706691 CATCTTAGTTTACTTACCTTCTGAACA 57.293 33.333 0.00 0.00 0.00 3.18
660 661 9.924650 TCATCTTAGTTTACTTACCTTCTGAAC 57.075 33.333 0.00 0.00 0.00 3.18
687 688 9.051679 CCAACCTTCAACGTATATGATAATCAA 57.948 33.333 0.00 0.00 0.00 2.57
688 689 8.425703 TCCAACCTTCAACGTATATGATAATCA 58.574 33.333 0.00 0.00 0.00 2.57
689 690 8.827177 TCCAACCTTCAACGTATATGATAATC 57.173 34.615 0.00 0.00 0.00 1.75
693 694 9.621629 TTTTATCCAACCTTCAACGTATATGAT 57.378 29.630 0.00 0.00 0.00 2.45
694 695 9.104965 CTTTTATCCAACCTTCAACGTATATGA 57.895 33.333 0.00 0.00 0.00 2.15
695 696 8.342634 CCTTTTATCCAACCTTCAACGTATATG 58.657 37.037 0.00 0.00 0.00 1.78
696 697 7.501225 CCCTTTTATCCAACCTTCAACGTATAT 59.499 37.037 0.00 0.00 0.00 0.86
697 698 6.824704 CCCTTTTATCCAACCTTCAACGTATA 59.175 38.462 0.00 0.00 0.00 1.47
698 699 5.650703 CCCTTTTATCCAACCTTCAACGTAT 59.349 40.000 0.00 0.00 0.00 3.06
699 700 5.005094 CCCTTTTATCCAACCTTCAACGTA 58.995 41.667 0.00 0.00 0.00 3.57
700 701 3.824443 CCCTTTTATCCAACCTTCAACGT 59.176 43.478 0.00 0.00 0.00 3.99
701 702 3.824443 ACCCTTTTATCCAACCTTCAACG 59.176 43.478 0.00 0.00 0.00 4.10
702 703 4.021456 CCACCCTTTTATCCAACCTTCAAC 60.021 45.833 0.00 0.00 0.00 3.18
703 704 4.156477 CCACCCTTTTATCCAACCTTCAA 58.844 43.478 0.00 0.00 0.00 2.69
704 705 3.141272 ACCACCCTTTTATCCAACCTTCA 59.859 43.478 0.00 0.00 0.00 3.02
705 706 3.509967 CACCACCCTTTTATCCAACCTTC 59.490 47.826 0.00 0.00 0.00 3.46
706 707 3.141272 TCACCACCCTTTTATCCAACCTT 59.859 43.478 0.00 0.00 0.00 3.50
707 708 2.719705 TCACCACCCTTTTATCCAACCT 59.280 45.455 0.00 0.00 0.00 3.50
708 709 3.089284 CTCACCACCCTTTTATCCAACC 58.911 50.000 0.00 0.00 0.00 3.77
709 710 4.028993 TCTCACCACCCTTTTATCCAAC 57.971 45.455 0.00 0.00 0.00 3.77
710 711 4.352595 TCTTCTCACCACCCTTTTATCCAA 59.647 41.667 0.00 0.00 0.00 3.53
711 712 3.913799 TCTTCTCACCACCCTTTTATCCA 59.086 43.478 0.00 0.00 0.00 3.41
712 713 4.569719 TCTTCTCACCACCCTTTTATCC 57.430 45.455 0.00 0.00 0.00 2.59
713 714 5.416013 CCTTTCTTCTCACCACCCTTTTATC 59.584 44.000 0.00 0.00 0.00 1.75
714 715 5.162980 ACCTTTCTTCTCACCACCCTTTTAT 60.163 40.000 0.00 0.00 0.00 1.40
715 716 4.167307 ACCTTTCTTCTCACCACCCTTTTA 59.833 41.667 0.00 0.00 0.00 1.52
716 717 3.052869 ACCTTTCTTCTCACCACCCTTTT 60.053 43.478 0.00 0.00 0.00 2.27
717 718 2.514160 ACCTTTCTTCTCACCACCCTTT 59.486 45.455 0.00 0.00 0.00 3.11
718 719 2.136026 ACCTTTCTTCTCACCACCCTT 58.864 47.619 0.00 0.00 0.00 3.95
719 720 1.421646 CACCTTTCTTCTCACCACCCT 59.578 52.381 0.00 0.00 0.00 4.34
720 721 1.420138 TCACCTTTCTTCTCACCACCC 59.580 52.381 0.00 0.00 0.00 4.61
721 722 2.930826 TCACCTTTCTTCTCACCACC 57.069 50.000 0.00 0.00 0.00 4.61
722 723 3.002348 CGTTTCACCTTTCTTCTCACCAC 59.998 47.826 0.00 0.00 0.00 4.16
723 724 3.202906 CGTTTCACCTTTCTTCTCACCA 58.797 45.455 0.00 0.00 0.00 4.17
724 725 2.548480 CCGTTTCACCTTTCTTCTCACC 59.452 50.000 0.00 0.00 0.00 4.02
725 726 3.463944 TCCGTTTCACCTTTCTTCTCAC 58.536 45.455 0.00 0.00 0.00 3.51
726 727 3.830744 TCCGTTTCACCTTTCTTCTCA 57.169 42.857 0.00 0.00 0.00 3.27
727 728 3.250280 GGTTCCGTTTCACCTTTCTTCTC 59.750 47.826 0.00 0.00 0.00 2.87
728 729 3.118000 AGGTTCCGTTTCACCTTTCTTCT 60.118 43.478 0.00 0.00 40.85 2.85
729 730 3.211865 AGGTTCCGTTTCACCTTTCTTC 58.788 45.455 0.00 0.00 40.85 2.87
730 731 3.292492 AGGTTCCGTTTCACCTTTCTT 57.708 42.857 0.00 0.00 40.85 2.52
735 736 3.782656 ACATAAGGTTCCGTTTCACCT 57.217 42.857 0.00 0.00 46.04 4.00
767 768 9.485206 AACGATTGTAAACAGTAAATCACTACT 57.515 29.630 0.00 0.00 34.98 2.57
770 771 8.832521 TGAAACGATTGTAAACAGTAAATCACT 58.167 29.630 0.00 0.00 38.32 3.41
771 772 8.996988 TGAAACGATTGTAAACAGTAAATCAC 57.003 30.769 0.00 0.00 0.00 3.06
772 773 9.820229 GATGAAACGATTGTAAACAGTAAATCA 57.180 29.630 0.00 0.00 0.00 2.57
773 774 9.820229 TGATGAAACGATTGTAAACAGTAAATC 57.180 29.630 0.00 0.00 0.00 2.17
774 775 9.607285 GTGATGAAACGATTGTAAACAGTAAAT 57.393 29.630 0.00 0.00 0.00 1.40
775 776 8.613482 TGTGATGAAACGATTGTAAACAGTAAA 58.387 29.630 0.00 0.00 0.00 2.01
776 777 8.144155 TGTGATGAAACGATTGTAAACAGTAA 57.856 30.769 0.00 0.00 0.00 2.24
777 778 7.716768 TGTGATGAAACGATTGTAAACAGTA 57.283 32.000 0.00 0.00 0.00 2.74
778 779 6.612247 TGTGATGAAACGATTGTAAACAGT 57.388 33.333 0.00 0.00 0.00 3.55
779 780 6.742718 GGATGTGATGAAACGATTGTAAACAG 59.257 38.462 0.00 0.00 0.00 3.16
780 781 6.205658 TGGATGTGATGAAACGATTGTAAACA 59.794 34.615 0.00 0.00 0.00 2.83
781 782 6.607689 TGGATGTGATGAAACGATTGTAAAC 58.392 36.000 0.00 0.00 0.00 2.01
782 783 6.809630 TGGATGTGATGAAACGATTGTAAA 57.190 33.333 0.00 0.00 0.00 2.01
783 784 7.226523 CCTATGGATGTGATGAAACGATTGTAA 59.773 37.037 0.00 0.00 0.00 2.41
784 785 6.705825 CCTATGGATGTGATGAAACGATTGTA 59.294 38.462 0.00 0.00 0.00 2.41
785 786 5.528690 CCTATGGATGTGATGAAACGATTGT 59.471 40.000 0.00 0.00 0.00 2.71
786 787 5.759763 TCCTATGGATGTGATGAAACGATTG 59.240 40.000 0.00 0.00 0.00 2.67
787 788 5.928976 TCCTATGGATGTGATGAAACGATT 58.071 37.500 0.00 0.00 0.00 3.34
788 789 5.512060 CCTCCTATGGATGTGATGAAACGAT 60.512 44.000 0.00 0.00 0.00 3.73
824 830 4.560128 CGGTTATATCCAGATGTCAGTGG 58.440 47.826 0.85 0.00 34.87 4.00
864 878 2.092323 GGTAGGGGACTCAATTGTTGC 58.908 52.381 5.13 0.00 43.67 4.17
934 955 4.421479 ACAGAAGTCGGGCGCGAG 62.421 66.667 27.32 16.44 0.00 5.03
935 956 4.415332 GACAGAAGTCGGGCGCGA 62.415 66.667 23.01 23.01 34.60 5.87
1168 1189 4.918201 GGCGATTGGGGGAGCGAG 62.918 72.222 0.00 0.00 0.00 5.03
1247 1268 8.739461 GCATTAACACGCAAAATTAATAGTACC 58.261 33.333 0.00 0.00 29.50 3.34
1333 1354 2.580729 TTGTCAAATTACGAACGCCG 57.419 45.000 0.00 0.00 45.44 6.46
1430 1451 1.513586 GTACTCCGTCGCGTCCTTG 60.514 63.158 5.77 0.00 0.00 3.61
1615 1636 5.804979 ACAAAGCAAAACACACATACTTGAC 59.195 36.000 0.00 0.00 0.00 3.18
1628 1649 2.863137 TCGGCATCAAACAAAGCAAAAC 59.137 40.909 0.00 0.00 0.00 2.43
1629 1650 3.170791 TCGGCATCAAACAAAGCAAAA 57.829 38.095 0.00 0.00 0.00 2.44
1640 1667 6.446318 GGCAAAATATTAAGATCGGCATCAA 58.554 36.000 0.00 0.00 0.00 2.57
1641 1668 5.048083 GGGCAAAATATTAAGATCGGCATCA 60.048 40.000 0.00 0.00 0.00 3.07
1642 1669 5.402398 GGGCAAAATATTAAGATCGGCATC 58.598 41.667 0.00 0.00 0.00 3.91
1645 1672 3.365969 CGGGGCAAAATATTAAGATCGGC 60.366 47.826 0.00 0.00 0.00 5.54
1647 1674 5.008217 TCAACGGGGCAAAATATTAAGATCG 59.992 40.000 0.00 0.00 0.00 3.69
1656 1683 1.202952 ACACCTCAACGGGGCAAAATA 60.203 47.619 0.00 0.00 41.20 1.40
1683 1710 3.184628 TCCCAGAATGACCAGAACATCT 58.815 45.455 0.00 0.00 39.69 2.90
1718 1745 5.729229 TCTTAAAATCCATGACCACCTAGGA 59.271 40.000 17.98 0.00 41.22 2.94
1774 1801 4.746361 TGCGTTGTTGCAATTGGG 57.254 50.000 0.59 0.00 43.02 4.12
1804 1831 3.802418 AACGTCTGCGCTTCCGGTT 62.802 57.895 9.73 3.72 42.83 4.44
1950 1977 6.380560 ACATGATACCATCTGAGATGATCGAT 59.619 38.462 23.29 10.33 0.00 3.59
2155 2182 6.180472 CCCAGAAGCAGATAAAAGTAAAGGA 58.820 40.000 0.00 0.00 0.00 3.36
2198 2226 2.638480 AGCCCTGCGAGCAAATATAA 57.362 45.000 0.00 0.00 0.00 0.98
2293 2321 1.606668 CGCTTGTACCCTTTTCTTGCA 59.393 47.619 0.00 0.00 0.00 4.08
2374 2688 5.147767 AGCACTACACTGATCCATACCATA 58.852 41.667 0.00 0.00 0.00 2.74
2442 2756 2.867109 ACCTTGTGTAGAGCAGCATT 57.133 45.000 0.00 0.00 0.00 3.56
2498 2812 4.764679 TTGTACTTGCATGACATCAACC 57.235 40.909 6.60 0.00 0.00 3.77
2690 3004 1.123861 TGCCTGTCCTCTGCTGAACT 61.124 55.000 0.00 0.00 0.00 3.01
2903 3217 1.770658 AGGCATAGCAGCAGATAACCA 59.229 47.619 0.00 0.00 35.83 3.67
3170 3484 3.067742 CAGAATGAAGCCATAAAGCTGGG 59.932 47.826 0.00 0.00 44.11 4.45
3346 3662 6.044512 ACACGTTGAAACACTAAAGCTTAG 57.955 37.500 0.00 0.20 0.00 2.18
3499 3816 6.255453 TCACTAGAAAAATGCAAAAACACTGC 59.745 34.615 0.00 0.00 40.35 4.40
3500 3817 7.489113 ACTCACTAGAAAAATGCAAAAACACTG 59.511 33.333 0.00 0.00 0.00 3.66
3501 3818 7.547227 ACTCACTAGAAAAATGCAAAAACACT 58.453 30.769 0.00 0.00 0.00 3.55
3502 3819 7.755582 ACTCACTAGAAAAATGCAAAAACAC 57.244 32.000 0.00 0.00 0.00 3.32
3574 3895 5.567534 GCGTCAAATCATCAAATTTACACGT 59.432 36.000 0.00 0.00 36.93 4.49
3715 4038 9.537192 TGTTAGTAACCTTGTATATACACATGC 57.463 33.333 15.20 5.88 35.64 4.06
3770 4095 7.039223 CGTGTAATACCTAATAAGACCCCTGAT 60.039 40.741 0.00 0.00 0.00 2.90
3777 4102 8.193438 ACTGGTTCGTGTAATACCTAATAAGAC 58.807 37.037 0.00 0.00 33.05 3.01
3820 4145 4.160329 ACAACATCCTCTCAGAGTGGTAA 58.840 43.478 16.61 0.95 31.13 2.85
3824 4149 4.790765 TGTACAACATCCTCTCAGAGTG 57.209 45.455 0.00 0.00 0.00 3.51
3829 4154 9.166173 CAAATTCTAATGTACAACATCCTCTCA 57.834 33.333 0.00 0.00 37.97 3.27
3898 4347 9.307121 CATACATAGTACTCTCCTCTTTTTGTG 57.693 37.037 0.00 0.00 0.00 3.33
4052 4505 4.766891 ACCCTGTTCATAACAAGACCAATG 59.233 41.667 0.00 0.00 41.61 2.82
4127 4615 6.471519 GCTCTTGATCAAAAGTTGCATGATAC 59.528 38.462 10.41 0.00 34.10 2.24
4176 4665 8.506437 CAATGTCGCACCAATATGTTATAGATT 58.494 33.333 0.00 0.00 0.00 2.40
4183 4672 4.217334 TGAACAATGTCGCACCAATATGTT 59.783 37.500 0.00 0.00 32.89 2.71
4193 4682 2.032799 GGACAAACTGAACAATGTCGCA 59.967 45.455 0.00 0.00 42.35 5.10
4214 4703 1.870402 TGTCGTGCCAGTTGTAACATG 59.130 47.619 0.00 0.00 0.00 3.21
4365 4861 4.171005 CAGCTCAGCAACACAATAAATGG 58.829 43.478 0.00 0.00 0.00 3.16
4366 4862 3.611113 GCAGCTCAGCAACACAATAAATG 59.389 43.478 0.00 0.00 0.00 2.32
4367 4863 3.508793 AGCAGCTCAGCAACACAATAAAT 59.491 39.130 0.00 0.00 36.85 1.40
4518 5127 1.722011 CGGATTTCCAGTTACGCACT 58.278 50.000 0.00 0.00 35.35 4.40
4519 5128 0.096454 GCGGATTTCCAGTTACGCAC 59.904 55.000 0.00 0.00 45.57 5.34
4550 5159 5.068460 TGTTTGTCCGATTCAACCTTTCAAT 59.932 36.000 0.00 0.00 0.00 2.57
4570 5179 9.860650 TTACTTGGAGCAATATATGGTATGTTT 57.139 29.630 0.00 0.00 40.59 2.83
4635 5244 1.072331 GCAACCCAGGATCATCCGTAT 59.928 52.381 0.00 0.00 42.75 3.06
4636 5245 0.468226 GCAACCCAGGATCATCCGTA 59.532 55.000 0.00 0.00 42.75 4.02
4642 5251 4.776322 CGCCGCAACCCAGGATCA 62.776 66.667 0.00 0.00 0.00 2.92
4651 5260 2.178273 GGGAATGTTCGCCGCAAC 59.822 61.111 0.00 0.00 34.41 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.