Multiple sequence alignment - TraesCS3A01G369800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G369800 chr3A 100.000 4926 0 0 1 4926 620753564 620758489 0.000000e+00 9097.0
1 TraesCS3A01G369800 chr3D 90.578 3927 234 58 317 4173 477238324 477242184 0.000000e+00 5077.0
2 TraesCS3A01G369800 chr3D 88.516 566 50 6 4166 4723 477242910 477243468 0.000000e+00 671.0
3 TraesCS3A01G369800 chr3D 75.439 684 103 31 4282 4924 302225206 302225865 6.280000e-69 272.0
4 TraesCS3A01G369800 chr3B 89.377 2278 126 48 505 2744 636439151 636441350 0.000000e+00 2760.0
5 TraesCS3A01G369800 chr3B 94.118 561 29 4 3452 4011 636441862 636442419 0.000000e+00 850.0
6 TraesCS3A01G369800 chr3B 77.528 979 139 39 4010 4921 636442391 636443355 9.460000e-142 514.0
7 TraesCS3A01G369800 chr2B 76.850 1162 239 21 1301 2453 712839218 712838078 3.240000e-176 628.0
8 TraesCS3A01G369800 chr2B 76.710 541 95 17 4404 4915 22015700 22015162 6.280000e-69 272.0
9 TraesCS3A01G369800 chr2B 83.537 164 25 2 2855 3017 7044724 7044886 8.540000e-33 152.0
10 TraesCS3A01G369800 chr2B 81.564 179 31 2 2855 3032 454724121 454723944 3.970000e-31 147.0
11 TraesCS3A01G369800 chr2B 81.564 179 31 2 2855 3032 454788256 454788079 3.970000e-31 147.0
12 TraesCS3A01G369800 chr2B 82.317 164 27 2 2855 3017 7157781 7157943 1.850000e-29 141.0
13 TraesCS3A01G369800 chr2D 76.268 1163 240 29 1301 2448 589243604 589242463 1.980000e-163 586.0
14 TraesCS3A01G369800 chr2D 100.000 38 0 0 148 185 65542780 65542817 2.460000e-08 71.3
15 TraesCS3A01G369800 chr2D 100.000 30 0 0 148 177 14357853 14357882 6.890000e-04 56.5
16 TraesCS3A01G369800 chr1A 78.807 486 87 10 4450 4926 374139231 374139709 3.700000e-81 313.0
17 TraesCS3A01G369800 chr1A 75.560 536 100 17 4416 4923 430230754 430230222 8.240000e-58 235.0
18 TraesCS3A01G369800 chr4D 78.218 505 78 17 4450 4924 124534881 124534379 1.340000e-75 294.0
19 TraesCS3A01G369800 chr4D 77.419 496 89 15 4450 4925 47557364 47557856 1.750000e-69 274.0
20 TraesCS3A01G369800 chr7D 78.024 496 84 10 4450 4926 163014606 163015095 6.240000e-74 289.0
21 TraesCS3A01G369800 chr7D 77.470 506 81 17 4450 4926 515397217 515396716 6.280000e-69 272.0
22 TraesCS3A01G369800 chr7D 81.273 267 39 8 4450 4710 453089486 453089225 6.460000e-49 206.0
23 TraesCS3A01G369800 chr6B 77.888 502 78 18 4455 4926 278287094 278286596 1.040000e-71 281.0
24 TraesCS3A01G369800 chr6B 97.059 34 0 1 148 181 88316838 88316870 6.890000e-04 56.5
25 TraesCS3A01G369800 chr7B 77.510 498 84 8 4450 4920 221275153 221275649 1.750000e-69 274.0
26 TraesCS3A01G369800 chr7B 76.471 493 84 19 4462 4924 437208214 437207724 6.370000e-59 239.0
27 TraesCS3A01G369800 chr7B 74.753 507 93 16 4450 4926 185271204 185271705 1.400000e-45 195.0
28 TraesCS3A01G369800 chr5D 76.782 491 87 14 4448 4920 443310137 443310618 2.940000e-62 250.0
29 TraesCS3A01G369800 chr4B 76.735 490 84 10 4450 4911 645330781 645331268 3.810000e-61 246.0
30 TraesCS3A01G369800 chr7A 75.875 514 92 9 4443 4926 281546434 281545923 2.960000e-57 233.0
31 TraesCS3A01G369800 chr7A 97.561 41 0 1 148 187 705601344 705601384 8.850000e-08 69.4
32 TraesCS3A01G369800 chr7A 92.857 42 1 2 148 187 730567988 730568029 5.330000e-05 60.2
33 TraesCS3A01G369800 chr7A 100.000 29 0 0 62 90 4578047 4578075 2.000000e-03 54.7
34 TraesCS3A01G369800 chr1B 75.483 518 91 19 4415 4897 6493356 6492840 2.310000e-53 220.0
35 TraesCS3A01G369800 chr1B 82.329 249 41 3 4464 4710 611583940 611583693 3.860000e-51 213.0
36 TraesCS3A01G369800 chrUn 81.564 179 31 2 2855 3032 268874983 268874806 3.970000e-31 147.0
37 TraesCS3A01G369800 chrUn 81.564 179 31 2 2855 3032 359499386 359499209 3.970000e-31 147.0
38 TraesCS3A01G369800 chrUn 81.564 179 31 2 2855 3032 360049656 360049479 3.970000e-31 147.0
39 TraesCS3A01G369800 chrUn 81.564 179 31 2 2855 3032 384038730 384038553 3.970000e-31 147.0
40 TraesCS3A01G369800 chr6D 100.000 39 0 0 148 186 44004101 44004139 6.840000e-09 73.1
41 TraesCS3A01G369800 chr4A 92.857 42 2 1 147 188 590279267 590279227 5.330000e-05 60.2
42 TraesCS3A01G369800 chr2A 97.143 35 0 1 150 184 17537726 17537759 1.920000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G369800 chr3A 620753564 620758489 4925 False 9097.000000 9097 100.000000 1 4926 1 chr3A.!!$F1 4925
1 TraesCS3A01G369800 chr3D 477238324 477243468 5144 False 2874.000000 5077 89.547000 317 4723 2 chr3D.!!$F2 4406
2 TraesCS3A01G369800 chr3D 302225206 302225865 659 False 272.000000 272 75.439000 4282 4924 1 chr3D.!!$F1 642
3 TraesCS3A01G369800 chr3B 636439151 636443355 4204 False 1374.666667 2760 87.007667 505 4921 3 chr3B.!!$F1 4416
4 TraesCS3A01G369800 chr2B 712838078 712839218 1140 True 628.000000 628 76.850000 1301 2453 1 chr2B.!!$R4 1152
5 TraesCS3A01G369800 chr2B 22015162 22015700 538 True 272.000000 272 76.710000 4404 4915 1 chr2B.!!$R1 511
6 TraesCS3A01G369800 chr2D 589242463 589243604 1141 True 586.000000 586 76.268000 1301 2448 1 chr2D.!!$R1 1147
7 TraesCS3A01G369800 chr1A 430230222 430230754 532 True 235.000000 235 75.560000 4416 4923 1 chr1A.!!$R1 507
8 TraesCS3A01G369800 chr4D 124534379 124534881 502 True 294.000000 294 78.218000 4450 4924 1 chr4D.!!$R1 474
9 TraesCS3A01G369800 chr7D 515396716 515397217 501 True 272.000000 272 77.470000 4450 4926 1 chr7D.!!$R2 476
10 TraesCS3A01G369800 chr7A 281545923 281546434 511 True 233.000000 233 75.875000 4443 4926 1 chr7A.!!$R1 483
11 TraesCS3A01G369800 chr1B 6492840 6493356 516 True 220.000000 220 75.483000 4415 4897 1 chr1B.!!$R1 482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 243 0.039527 GGTTGAAAGGCGTGCGAAAT 60.040 50.0 0.00 0.0 0.00 2.17 F
503 522 0.094730 CCTGGATTCGTTTTCGTCGC 59.905 55.0 0.00 0.0 44.46 5.19 F
1018 1046 0.243636 GATGAAAACAAGTGCCCCCG 59.756 55.0 0.00 0.0 0.00 5.73 F
2651 2707 0.178068 ACTACCTGCATCGGCGAATT 59.822 50.0 15.93 0.0 45.35 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1630 1678 0.105964 TCGGCCCTGGACATAAATCG 59.894 55.0 0.0 0.0 0.0 3.34 R
1988 2036 0.664166 CCAGCGAACACAAACATGGC 60.664 55.0 0.0 0.0 0.0 4.40 R
2865 3094 0.389296 CACGGGTATCACGCACTCAA 60.389 55.0 0.0 0.0 34.0 3.02 R
4241 5248 0.037447 TGCGGTCAACATTGGATGGA 59.963 50.0 0.0 0.0 33.6 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 4.983671 AATAAAATCCAAAGGAGCGACC 57.016 40.909 0.00 0.00 34.05 4.79
61 62 2.286365 AAAATCCAAAGGAGCGACCA 57.714 45.000 5.84 0.00 42.04 4.02
62 63 1.826385 AAATCCAAAGGAGCGACCAG 58.174 50.000 5.84 0.00 42.04 4.00
63 64 0.984230 AATCCAAAGGAGCGACCAGA 59.016 50.000 5.84 0.00 42.04 3.86
64 65 0.539051 ATCCAAAGGAGCGACCAGAG 59.461 55.000 5.84 0.00 42.04 3.35
65 66 1.743252 CCAAAGGAGCGACCAGAGC 60.743 63.158 5.84 0.00 42.04 4.09
66 67 2.097038 CAAAGGAGCGACCAGAGCG 61.097 63.158 5.84 0.00 42.04 5.03
73 74 3.175240 CGACCAGAGCGCGTCAAG 61.175 66.667 8.43 2.53 0.00 3.02
74 75 2.049063 GACCAGAGCGCGTCAAGT 60.049 61.111 8.43 5.72 0.00 3.16
75 76 2.356313 ACCAGAGCGCGTCAAGTG 60.356 61.111 8.43 0.00 0.00 3.16
76 77 3.114616 CCAGAGCGCGTCAAGTGG 61.115 66.667 8.43 4.29 0.00 4.00
77 78 3.782244 CAGAGCGCGTCAAGTGGC 61.782 66.667 8.43 0.00 0.00 5.01
108 109 4.638895 GCCCCCAGTGCCCCTTTT 62.639 66.667 0.00 0.00 0.00 2.27
109 110 2.204034 CCCCCAGTGCCCCTTTTT 59.796 61.111 0.00 0.00 0.00 1.94
128 129 3.508845 TTTTTGAGGGGAGGTCTTCTG 57.491 47.619 0.00 0.00 0.00 3.02
129 130 2.415983 TTTGAGGGGAGGTCTTCTGA 57.584 50.000 0.00 0.00 0.00 3.27
130 131 2.415983 TTGAGGGGAGGTCTTCTGAA 57.584 50.000 0.00 0.00 0.00 3.02
131 132 1.944177 TGAGGGGAGGTCTTCTGAAG 58.056 55.000 11.18 11.18 0.00 3.02
132 133 1.199615 GAGGGGAGGTCTTCTGAAGG 58.800 60.000 16.83 0.00 0.00 3.46
133 134 0.793617 AGGGGAGGTCTTCTGAAGGA 59.206 55.000 16.83 1.98 0.00 3.36
134 135 1.152271 AGGGGAGGTCTTCTGAAGGAA 59.848 52.381 16.83 0.00 0.00 3.36
135 136 2.200955 GGGGAGGTCTTCTGAAGGAAT 58.799 52.381 16.83 3.56 33.01 3.01
136 137 3.014110 AGGGGAGGTCTTCTGAAGGAATA 59.986 47.826 16.83 0.00 33.01 1.75
137 138 3.134985 GGGGAGGTCTTCTGAAGGAATAC 59.865 52.174 16.83 7.83 33.01 1.89
138 139 4.034410 GGGAGGTCTTCTGAAGGAATACT 58.966 47.826 16.83 8.34 33.35 2.12
139 140 4.100344 GGGAGGTCTTCTGAAGGAATACTC 59.900 50.000 16.83 14.97 33.35 2.59
140 141 4.100344 GGAGGTCTTCTGAAGGAATACTCC 59.900 50.000 16.83 18.82 42.81 3.85
168 169 6.449635 TTTGACACATATGGTAAGCAATCC 57.550 37.500 7.80 0.00 0.00 3.01
169 170 5.109500 TGACACATATGGTAAGCAATCCA 57.891 39.130 7.80 0.00 38.14 3.41
170 171 5.504853 TGACACATATGGTAAGCAATCCAA 58.495 37.500 7.80 0.00 37.27 3.53
171 172 5.948758 TGACACATATGGTAAGCAATCCAAA 59.051 36.000 7.80 0.00 37.27 3.28
172 173 6.127758 TGACACATATGGTAAGCAATCCAAAC 60.128 38.462 7.80 0.00 37.27 2.93
173 174 5.714333 ACACATATGGTAAGCAATCCAAACA 59.286 36.000 7.80 0.00 37.27 2.83
174 175 6.210385 ACACATATGGTAAGCAATCCAAACAA 59.790 34.615 7.80 0.00 37.27 2.83
175 176 7.093377 ACACATATGGTAAGCAATCCAAACAAT 60.093 33.333 7.80 0.00 37.27 2.71
176 177 7.765360 CACATATGGTAAGCAATCCAAACAATT 59.235 33.333 7.80 0.00 37.27 2.32
177 178 7.981225 ACATATGGTAAGCAATCCAAACAATTC 59.019 33.333 7.80 0.00 37.27 2.17
178 179 5.798125 TGGTAAGCAATCCAAACAATTCA 57.202 34.783 0.00 0.00 0.00 2.57
179 180 6.166984 TGGTAAGCAATCCAAACAATTCAA 57.833 33.333 0.00 0.00 0.00 2.69
180 181 6.586344 TGGTAAGCAATCCAAACAATTCAAA 58.414 32.000 0.00 0.00 0.00 2.69
181 182 7.050377 TGGTAAGCAATCCAAACAATTCAAAA 58.950 30.769 0.00 0.00 0.00 2.44
182 183 7.554118 TGGTAAGCAATCCAAACAATTCAAAAA 59.446 29.630 0.00 0.00 0.00 1.94
224 225 1.673168 GCTGCTCTCAGGTTATTGGG 58.327 55.000 0.00 0.00 40.65 4.12
225 226 1.065126 GCTGCTCTCAGGTTATTGGGT 60.065 52.381 0.00 0.00 40.65 4.51
226 227 2.619074 GCTGCTCTCAGGTTATTGGGTT 60.619 50.000 0.00 0.00 40.65 4.11
227 228 3.012518 CTGCTCTCAGGTTATTGGGTTG 58.987 50.000 0.00 0.00 36.68 3.77
228 229 2.642311 TGCTCTCAGGTTATTGGGTTGA 59.358 45.455 0.00 0.00 0.00 3.18
229 230 3.073798 TGCTCTCAGGTTATTGGGTTGAA 59.926 43.478 0.00 0.00 0.00 2.69
230 231 4.079253 GCTCTCAGGTTATTGGGTTGAAA 58.921 43.478 0.00 0.00 0.00 2.69
231 232 4.156739 GCTCTCAGGTTATTGGGTTGAAAG 59.843 45.833 0.00 0.00 0.00 2.62
232 233 4.662278 TCTCAGGTTATTGGGTTGAAAGG 58.338 43.478 0.00 0.00 0.00 3.11
233 234 3.161866 TCAGGTTATTGGGTTGAAAGGC 58.838 45.455 0.00 0.00 0.00 4.35
234 235 2.094752 CAGGTTATTGGGTTGAAAGGCG 60.095 50.000 0.00 0.00 0.00 5.52
235 236 1.890489 GGTTATTGGGTTGAAAGGCGT 59.110 47.619 0.00 0.00 0.00 5.68
236 237 2.352323 GGTTATTGGGTTGAAAGGCGTG 60.352 50.000 0.00 0.00 0.00 5.34
237 238 0.885196 TATTGGGTTGAAAGGCGTGC 59.115 50.000 0.00 0.00 0.00 5.34
238 239 2.141122 ATTGGGTTGAAAGGCGTGCG 62.141 55.000 0.00 0.00 0.00 5.34
239 240 2.975799 GGGTTGAAAGGCGTGCGA 60.976 61.111 0.00 0.00 0.00 5.10
240 241 2.548295 GGGTTGAAAGGCGTGCGAA 61.548 57.895 0.00 0.00 0.00 4.70
241 242 1.357334 GGTTGAAAGGCGTGCGAAA 59.643 52.632 0.00 0.00 0.00 3.46
242 243 0.039527 GGTTGAAAGGCGTGCGAAAT 60.040 50.000 0.00 0.00 0.00 2.17
243 244 1.601914 GGTTGAAAGGCGTGCGAAATT 60.602 47.619 0.00 0.00 0.00 1.82
244 245 2.124122 GTTGAAAGGCGTGCGAAATTT 58.876 42.857 0.00 0.00 0.00 1.82
245 246 2.500509 TGAAAGGCGTGCGAAATTTT 57.499 40.000 0.00 0.00 0.00 1.82
246 247 2.815478 TGAAAGGCGTGCGAAATTTTT 58.185 38.095 0.00 0.00 0.00 1.94
247 248 3.966154 TGAAAGGCGTGCGAAATTTTTA 58.034 36.364 0.00 0.00 0.00 1.52
248 249 4.551388 TGAAAGGCGTGCGAAATTTTTAT 58.449 34.783 0.00 0.00 0.00 1.40
249 250 4.619336 TGAAAGGCGTGCGAAATTTTTATC 59.381 37.500 0.00 0.00 0.00 1.75
250 251 4.434713 AAGGCGTGCGAAATTTTTATCT 57.565 36.364 0.00 0.00 0.00 1.98
251 252 4.016113 AGGCGTGCGAAATTTTTATCTC 57.984 40.909 0.00 0.00 0.00 2.75
252 253 3.438781 AGGCGTGCGAAATTTTTATCTCA 59.561 39.130 0.00 0.00 0.00 3.27
253 254 3.542310 GGCGTGCGAAATTTTTATCTCAC 59.458 43.478 0.00 0.00 0.00 3.51
254 255 4.155449 GCGTGCGAAATTTTTATCTCACA 58.845 39.130 0.00 0.00 0.00 3.58
255 256 4.793216 GCGTGCGAAATTTTTATCTCACAT 59.207 37.500 0.00 0.00 0.00 3.21
256 257 5.286082 GCGTGCGAAATTTTTATCTCACATT 59.714 36.000 0.00 0.00 0.00 2.71
257 258 6.676385 CGTGCGAAATTTTTATCTCACATTG 58.324 36.000 0.00 0.00 0.00 2.82
258 259 6.460987 GTGCGAAATTTTTATCTCACATTGC 58.539 36.000 0.00 0.00 0.00 3.56
259 260 6.089283 GTGCGAAATTTTTATCTCACATTGCA 59.911 34.615 0.00 0.00 0.00 4.08
260 261 6.644181 TGCGAAATTTTTATCTCACATTGCAA 59.356 30.769 0.00 0.00 0.00 4.08
261 262 7.331440 TGCGAAATTTTTATCTCACATTGCAAT 59.669 29.630 5.99 5.99 0.00 3.56
262 263 7.633281 GCGAAATTTTTATCTCACATTGCAATG 59.367 33.333 32.74 32.74 42.10 2.82
263 264 8.111836 CGAAATTTTTATCTCACATTGCAATGG 58.888 33.333 35.85 26.00 40.70 3.16
264 265 8.851541 AAATTTTTATCTCACATTGCAATGGT 57.148 26.923 35.85 22.00 40.70 3.55
265 266 8.851541 AATTTTTATCTCACATTGCAATGGTT 57.148 26.923 35.85 18.67 40.70 3.67
266 267 9.941325 AATTTTTATCTCACATTGCAATGGTTA 57.059 25.926 35.85 22.20 40.70 2.85
268 269 9.941325 TTTTTATCTCACATTGCAATGGTTATT 57.059 25.926 35.85 22.21 40.70 1.40
269 270 8.929827 TTTATCTCACATTGCAATGGTTATTG 57.070 30.769 35.85 26.00 45.17 1.90
270 271 6.778834 ATCTCACATTGCAATGGTTATTGA 57.221 33.333 35.85 28.09 45.21 2.57
271 272 6.198650 TCTCACATTGCAATGGTTATTGAG 57.801 37.500 35.85 33.45 45.21 3.02
272 273 5.711506 TCTCACATTGCAATGGTTATTGAGT 59.288 36.000 33.52 17.31 45.21 3.41
273 274 5.953183 TCACATTGCAATGGTTATTGAGTC 58.047 37.500 35.85 0.00 45.21 3.36
274 275 4.794762 CACATTGCAATGGTTATTGAGTCG 59.205 41.667 35.85 12.61 45.21 4.18
275 276 4.699735 ACATTGCAATGGTTATTGAGTCGA 59.300 37.500 35.85 0.00 45.21 4.20
276 277 5.182950 ACATTGCAATGGTTATTGAGTCGAA 59.817 36.000 35.85 0.00 45.21 3.71
277 278 4.944962 TGCAATGGTTATTGAGTCGAAG 57.055 40.909 4.33 0.00 45.21 3.79
278 279 3.689161 TGCAATGGTTATTGAGTCGAAGG 59.311 43.478 4.33 0.00 45.21 3.46
279 280 3.487544 GCAATGGTTATTGAGTCGAAGGC 60.488 47.826 4.33 0.00 45.21 4.35
280 281 2.396590 TGGTTATTGAGTCGAAGGCC 57.603 50.000 0.00 0.00 0.00 5.19
281 282 1.065709 TGGTTATTGAGTCGAAGGCCC 60.066 52.381 0.00 0.00 0.00 5.80
282 283 1.065709 GGTTATTGAGTCGAAGGCCCA 60.066 52.381 0.00 0.00 0.00 5.36
283 284 2.421529 GGTTATTGAGTCGAAGGCCCAT 60.422 50.000 0.00 0.00 0.00 4.00
284 285 3.279434 GTTATTGAGTCGAAGGCCCATT 58.721 45.455 0.00 0.00 0.00 3.16
285 286 4.448210 GTTATTGAGTCGAAGGCCCATTA 58.552 43.478 0.00 0.00 0.00 1.90
286 287 3.644966 ATTGAGTCGAAGGCCCATTAA 57.355 42.857 0.00 0.00 0.00 1.40
287 288 2.396590 TGAGTCGAAGGCCCATTAAC 57.603 50.000 0.00 0.00 0.00 2.01
288 289 1.626321 TGAGTCGAAGGCCCATTAACA 59.374 47.619 0.00 0.00 0.00 2.41
289 290 2.039216 TGAGTCGAAGGCCCATTAACAA 59.961 45.455 0.00 0.00 0.00 2.83
290 291 2.678336 GAGTCGAAGGCCCATTAACAAG 59.322 50.000 0.00 0.00 0.00 3.16
291 292 2.039879 AGTCGAAGGCCCATTAACAAGT 59.960 45.455 0.00 0.00 0.00 3.16
292 293 3.262405 AGTCGAAGGCCCATTAACAAGTA 59.738 43.478 0.00 0.00 0.00 2.24
293 294 3.373130 GTCGAAGGCCCATTAACAAGTAC 59.627 47.826 0.00 0.00 0.00 2.73
294 295 3.262405 TCGAAGGCCCATTAACAAGTACT 59.738 43.478 0.00 0.00 0.00 2.73
295 296 3.621715 CGAAGGCCCATTAACAAGTACTC 59.378 47.826 0.00 0.00 0.00 2.59
296 297 3.646736 AGGCCCATTAACAAGTACTCC 57.353 47.619 0.00 0.00 0.00 3.85
297 298 2.093128 AGGCCCATTAACAAGTACTCCG 60.093 50.000 0.00 0.00 0.00 4.63
298 299 2.355412 GGCCCATTAACAAGTACTCCGT 60.355 50.000 0.00 0.00 0.00 4.69
299 300 2.934553 GCCCATTAACAAGTACTCCGTC 59.065 50.000 0.00 0.00 0.00 4.79
300 301 3.369157 GCCCATTAACAAGTACTCCGTCT 60.369 47.826 0.00 0.00 0.00 4.18
301 302 4.430908 CCCATTAACAAGTACTCCGTCTC 58.569 47.826 0.00 0.00 0.00 3.36
302 303 4.159879 CCCATTAACAAGTACTCCGTCTCT 59.840 45.833 0.00 0.00 0.00 3.10
303 304 5.359009 CCCATTAACAAGTACTCCGTCTCTA 59.641 44.000 0.00 0.00 0.00 2.43
304 305 6.127535 CCCATTAACAAGTACTCCGTCTCTAA 60.128 42.308 0.00 0.00 0.00 2.10
305 306 7.318141 CCATTAACAAGTACTCCGTCTCTAAA 58.682 38.462 0.00 0.00 0.00 1.85
306 307 7.488471 CCATTAACAAGTACTCCGTCTCTAAAG 59.512 40.741 0.00 0.00 0.00 1.85
307 308 7.750229 TTAACAAGTACTCCGTCTCTAAAGA 57.250 36.000 0.00 0.00 0.00 2.52
308 309 6.645790 AACAAGTACTCCGTCTCTAAAGAA 57.354 37.500 0.00 0.00 31.93 2.52
309 310 6.645790 ACAAGTACTCCGTCTCTAAAGAAA 57.354 37.500 0.00 0.00 31.93 2.52
310 311 7.229581 ACAAGTACTCCGTCTCTAAAGAAAT 57.770 36.000 0.00 0.00 31.93 2.17
311 312 8.345724 ACAAGTACTCCGTCTCTAAAGAAATA 57.654 34.615 0.00 0.00 31.93 1.40
312 313 8.968969 ACAAGTACTCCGTCTCTAAAGAAATAT 58.031 33.333 0.00 0.00 31.93 1.28
358 359 0.958091 CGAGCAACACCCAAATTCCA 59.042 50.000 0.00 0.00 0.00 3.53
370 371 6.183360 ACACCCAAATTCCAGTTACTCTTTTG 60.183 38.462 0.00 0.00 0.00 2.44
371 372 5.304357 ACCCAAATTCCAGTTACTCTTTTGG 59.696 40.000 13.46 13.46 38.78 3.28
372 373 5.304357 CCCAAATTCCAGTTACTCTTTTGGT 59.696 40.000 16.58 0.00 38.03 3.67
373 374 6.447162 CCAAATTCCAGTTACTCTTTTGGTC 58.553 40.000 12.73 0.00 36.41 4.02
374 375 6.265422 CCAAATTCCAGTTACTCTTTTGGTCT 59.735 38.462 12.73 0.00 36.41 3.85
461 479 1.541620 GTCCAGGTTTCCCCTCCCT 60.542 63.158 0.00 0.00 43.86 4.20
464 482 2.127528 AGGTTTCCCCTCCCTCCC 59.872 66.667 0.00 0.00 40.71 4.30
478 496 1.675007 CCTCCCTCCCCTCTTTCTTT 58.325 55.000 0.00 0.00 0.00 2.52
483 501 1.340502 CCTCCCCTCTTTCTTTCTGGC 60.341 57.143 0.00 0.00 0.00 4.85
486 504 0.701147 CCCTCTTTCTTTCTGGCCCT 59.299 55.000 0.00 0.00 0.00 5.19
487 505 1.615384 CCCTCTTTCTTTCTGGCCCTG 60.615 57.143 0.00 0.00 0.00 4.45
493 512 0.253044 TCTTTCTGGCCCTGGATTCG 59.747 55.000 0.00 0.00 0.00 3.34
498 517 0.811281 CTGGCCCTGGATTCGTTTTC 59.189 55.000 0.00 0.00 0.00 2.29
499 518 0.958382 TGGCCCTGGATTCGTTTTCG 60.958 55.000 0.00 0.00 45.64 3.46
503 522 0.094730 CCTGGATTCGTTTTCGTCGC 59.905 55.000 0.00 0.00 44.46 5.19
534 553 1.723542 GCTCGCATCTGAATACCGATG 59.276 52.381 0.00 0.00 39.91 3.84
541 560 1.037493 CTGAATACCGATGGGTCCGA 58.963 55.000 1.19 0.00 46.01 4.55
543 562 1.832366 TGAATACCGATGGGTCCGAAA 59.168 47.619 1.19 0.00 46.01 3.46
560 579 5.854338 GTCCGAAATTTTTGCAGTAAATCGA 59.146 36.000 15.27 0.00 31.88 3.59
634 653 2.029666 CGGCGGCCCTCAGATTAG 59.970 66.667 14.55 0.00 0.00 1.73
656 675 2.039818 TTTGCACCCAACGTTGAGTA 57.960 45.000 29.35 14.74 0.00 2.59
659 678 0.865769 GCACCCAACGTTGAGTACTG 59.134 55.000 29.35 11.82 0.00 2.74
660 679 1.508632 CACCCAACGTTGAGTACTGG 58.491 55.000 29.35 21.28 31.92 4.00
675 694 5.831525 TGAGTACTGGAGTAGTTGTTTGAGA 59.168 40.000 0.00 0.00 40.89 3.27
683 702 4.327680 AGTAGTTGTTTGAGATGGGCTTC 58.672 43.478 0.00 0.00 0.00 3.86
687 706 1.988107 TGTTTGAGATGGGCTTCTCCT 59.012 47.619 13.08 0.00 41.24 3.69
732 751 9.063615 GTATTCTTCAGGGTCAGTAAAGAAAAA 57.936 33.333 0.00 0.00 38.87 1.94
801 822 1.847798 TACGGGCATTTGACCCTGCT 61.848 55.000 0.00 0.00 46.04 4.24
817 838 4.279420 ACCCTGCTCAAAGAAAAGTTCATC 59.721 41.667 0.00 0.00 0.00 2.92
822 843 7.094032 CCTGCTCAAAGAAAAGTTCATCCTAAT 60.094 37.037 0.00 0.00 0.00 1.73
823 844 7.596494 TGCTCAAAGAAAAGTTCATCCTAATG 58.404 34.615 0.00 0.00 0.00 1.90
824 845 7.031975 GCTCAAAGAAAAGTTCATCCTAATGG 58.968 38.462 0.00 0.00 33.42 3.16
864 885 4.579340 TGTTAATCAAACTACCGGCAACAA 59.421 37.500 0.00 0.00 38.99 2.83
870 891 3.636282 AACTACCGGCAACAAATGTTC 57.364 42.857 0.00 0.00 35.83 3.18
892 913 7.761409 GTTCAGATGAACCAATTAGTTATGCA 58.239 34.615 13.59 0.00 46.42 3.96
897 918 9.643693 AGATGAACCAATTAGTTATGCAAAAAG 57.356 29.630 0.00 0.00 0.00 2.27
930 951 4.884247 AGAATAATACTCCGTGCTAAGGC 58.116 43.478 0.00 0.00 39.26 4.35
996 1024 8.594881 ATTGTAGATCTAGCAATTTTACTCCG 57.405 34.615 17.62 0.00 29.59 4.63
1008 1036 6.442952 CAATTTTACTCCGGTGATGAAAACA 58.557 36.000 11.17 0.00 0.00 2.83
1018 1046 0.243636 GATGAAAACAAGTGCCCCCG 59.756 55.000 0.00 0.00 0.00 5.73
1038 1066 2.197324 GTTTGTGGGCAGGGACCA 59.803 61.111 0.00 0.00 39.14 4.02
1073 1101 7.388500 TCGTCGTTCCATAAAACCTTTTAAGAT 59.612 33.333 0.00 0.00 36.35 2.40
1090 1118 9.618890 CTTTTAAGATGACAAGATCCAAGGATA 57.381 33.333 0.68 0.00 34.60 2.59
1110 1138 5.012561 GGATATTCAGCTTCACCATCTACCT 59.987 44.000 0.00 0.00 0.00 3.08
1147 1175 3.195396 TCTTGCATCTTTGTTAATGGGCC 59.805 43.478 0.00 0.00 0.00 5.80
1148 1176 2.818921 TGCATCTTTGTTAATGGGCCT 58.181 42.857 4.53 0.00 0.00 5.19
1150 1178 3.195396 TGCATCTTTGTTAATGGGCCTTC 59.805 43.478 4.53 0.00 0.00 3.46
1151 1179 3.448660 GCATCTTTGTTAATGGGCCTTCT 59.551 43.478 4.53 0.00 0.00 2.85
1152 1180 4.081476 GCATCTTTGTTAATGGGCCTTCTT 60.081 41.667 4.53 0.00 0.00 2.52
1154 1182 6.466812 CATCTTTGTTAATGGGCCTTCTTTT 58.533 36.000 4.53 0.00 0.00 2.27
1155 1183 6.493189 TCTTTGTTAATGGGCCTTCTTTTT 57.507 33.333 4.53 0.00 0.00 1.94
1203 1247 8.598916 TGTTCCTCACACATTAATTAAGGTAGA 58.401 33.333 14.61 13.85 0.00 2.59
1204 1248 9.444600 GTTCCTCACACATTAATTAAGGTAGAA 57.555 33.333 14.61 10.06 0.00 2.10
1206 1250 9.667107 TCCTCACACATTAATTAAGGTAGAAAG 57.333 33.333 14.61 9.90 0.00 2.62
1223 1267 6.931840 GGTAGAAAGAACTGAGACTTGAACAT 59.068 38.462 0.00 0.00 0.00 2.71
1224 1268 6.857777 AGAAAGAACTGAGACTTGAACATG 57.142 37.500 0.00 0.00 0.00 3.21
1225 1269 5.762218 AGAAAGAACTGAGACTTGAACATGG 59.238 40.000 0.00 0.00 0.00 3.66
1226 1270 4.013267 AGAACTGAGACTTGAACATGGG 57.987 45.455 0.00 0.00 0.00 4.00
1227 1271 3.392616 AGAACTGAGACTTGAACATGGGT 59.607 43.478 0.00 0.00 0.00 4.51
1229 1273 1.808945 CTGAGACTTGAACATGGGTGC 59.191 52.381 0.00 0.00 0.00 5.01
1230 1274 1.142667 TGAGACTTGAACATGGGTGCA 59.857 47.619 0.00 0.00 0.00 4.57
1231 1275 2.224843 TGAGACTTGAACATGGGTGCAT 60.225 45.455 0.00 0.00 30.89 3.96
1232 1276 2.821969 GAGACTTGAACATGGGTGCATT 59.178 45.455 0.00 0.00 30.89 3.56
1233 1277 4.009675 GAGACTTGAACATGGGTGCATTA 58.990 43.478 0.00 0.00 30.89 1.90
1234 1278 3.758554 AGACTTGAACATGGGTGCATTAC 59.241 43.478 0.00 0.00 30.89 1.89
1235 1279 3.495331 ACTTGAACATGGGTGCATTACA 58.505 40.909 0.00 0.00 30.89 2.41
1236 1280 4.088634 ACTTGAACATGGGTGCATTACAT 58.911 39.130 0.00 0.00 30.89 2.29
1237 1281 4.082081 ACTTGAACATGGGTGCATTACATG 60.082 41.667 19.99 19.99 45.56 3.21
1238 1282 2.759535 TGAACATGGGTGCATTACATGG 59.240 45.455 23.27 11.63 44.65 3.66
1242 1286 4.545678 ACATGGGTGCATTACATGGTATT 58.454 39.130 23.27 7.70 44.65 1.89
1275 1319 2.040145 TCAACCACATTGATGAGAGCCA 59.960 45.455 0.00 0.00 42.62 4.75
1288 1332 4.836125 TGAGAGCCACTGATTTGTTTTC 57.164 40.909 0.00 0.00 0.00 2.29
1290 1335 3.565307 AGAGCCACTGATTTGTTTTCCA 58.435 40.909 0.00 0.00 0.00 3.53
1329 1374 6.870971 TGTACTGCATCGTATACTATCACA 57.129 37.500 0.56 0.00 0.00 3.58
1349 1394 5.068855 TCACAATTGACAATGAAAGAAGCCA 59.931 36.000 13.59 0.00 0.00 4.75
1381 1426 7.290813 TGAGCATACTATCTAAGAAGTGGAGA 58.709 38.462 0.00 0.00 0.00 3.71
1425 1470 5.700402 AAGTTAGTATTCACCAGAGCCAT 57.300 39.130 0.00 0.00 0.00 4.40
1430 1475 3.457380 AGTATTCACCAGAGCCATGATGT 59.543 43.478 0.00 0.00 0.00 3.06
1522 1570 2.378028 GCGACAGCTCAAGTCATCC 58.622 57.895 3.84 0.00 41.01 3.51
1589 1637 4.132336 CACACCTCACATTGATAGATGGG 58.868 47.826 0.00 0.00 0.00 4.00
1754 1802 6.320672 TCTTAGTCTGGGGTTCGTCTATTTAG 59.679 42.308 0.00 0.00 0.00 1.85
1835 1883 2.764128 TCACAGGGGATCTCGGGC 60.764 66.667 0.00 0.00 0.00 6.13
1929 1977 2.125350 GGAACTGAGCAGGCTCCG 60.125 66.667 17.92 14.16 42.09 4.63
2050 2098 5.048504 GCTTGGTGAATCTGTGAAGATTTCA 60.049 40.000 2.69 1.01 38.50 2.69
2182 2230 6.631962 TGAAACCAAGGTTTGTTCGTTAAAT 58.368 32.000 21.05 0.00 46.80 1.40
2366 2421 0.528901 TCGATATTGTTGGGTCGCCG 60.529 55.000 0.00 0.00 34.33 6.46
2538 2594 7.734942 AGTTTGGATATTTTTGTGTGTGGAAT 58.265 30.769 0.00 0.00 0.00 3.01
2606 2662 4.852650 GCAATGTTTTGTGCAAATATTGGC 59.147 37.500 22.10 7.96 46.51 4.52
2607 2663 5.562307 GCAATGTTTTGTGCAAATATTGGCA 60.562 36.000 13.72 13.72 46.51 4.92
2608 2664 5.866335 ATGTTTTGTGCAAATATTGGCAG 57.134 34.783 18.05 0.00 41.35 4.85
2628 2684 0.544697 GGGGCAATTTCGGTCCTAGA 59.455 55.000 0.00 0.00 0.00 2.43
2637 2693 6.202379 GCAATTTCGGTCCTAGATTTACTACC 59.798 42.308 0.00 0.00 0.00 3.18
2646 2702 3.113260 AGATTTACTACCTGCATCGGC 57.887 47.619 0.00 0.00 41.68 5.54
2651 2707 0.178068 ACTACCTGCATCGGCGAATT 59.822 50.000 15.93 0.00 45.35 2.17
2733 2797 8.092068 CACATTGGAAATGCATGGTATTCATAT 58.908 33.333 0.00 0.00 34.12 1.78
2776 3002 6.732896 AGTGGATGGTTAGTCGATAATTCT 57.267 37.500 0.00 0.00 0.00 2.40
2777 3003 6.750148 AGTGGATGGTTAGTCGATAATTCTC 58.250 40.000 0.00 0.00 0.00 2.87
2778 3004 6.551601 AGTGGATGGTTAGTCGATAATTCTCT 59.448 38.462 0.00 0.00 0.00 3.10
2779 3005 6.642950 GTGGATGGTTAGTCGATAATTCTCTG 59.357 42.308 0.00 0.00 0.00 3.35
2780 3006 6.549736 TGGATGGTTAGTCGATAATTCTCTGA 59.450 38.462 0.00 0.00 0.00 3.27
2781 3007 7.087639 GGATGGTTAGTCGATAATTCTCTGAG 58.912 42.308 0.00 0.00 0.00 3.35
2783 3009 5.221263 TGGTTAGTCGATAATTCTCTGAGGC 60.221 44.000 4.59 0.00 0.00 4.70
2784 3010 5.010213 GGTTAGTCGATAATTCTCTGAGGCT 59.990 44.000 4.59 0.00 0.00 4.58
2785 3011 4.582701 AGTCGATAATTCTCTGAGGCTG 57.417 45.455 4.59 0.00 0.00 4.85
2786 3012 3.320541 AGTCGATAATTCTCTGAGGCTGG 59.679 47.826 4.59 0.00 0.00 4.85
2787 3013 2.630098 TCGATAATTCTCTGAGGCTGGG 59.370 50.000 4.59 0.00 0.00 4.45
2788 3014 2.366916 CGATAATTCTCTGAGGCTGGGT 59.633 50.000 4.59 0.00 0.00 4.51
2821 3050 7.607991 ACTCCCTGTGAACAGTAAAATCATTAG 59.392 37.037 9.49 0.00 42.27 1.73
2830 3059 7.716799 ACAGTAAAATCATTAGAAATGGCCA 57.283 32.000 8.56 8.56 0.00 5.36
2868 3097 4.933505 TTTTGTGGTGCAAGATGATTGA 57.066 36.364 0.00 0.00 38.47 2.57
2869 3098 4.508461 TTTGTGGTGCAAGATGATTGAG 57.492 40.909 0.00 0.00 38.47 3.02
2913 3142 5.568685 TTTGTGAAGTTCGGACATTTGAA 57.431 34.783 0.00 0.00 0.00 2.69
2934 3163 2.494530 GCCCGTGGCCAAAAAGACA 61.495 57.895 7.24 0.00 44.06 3.41
2951 3180 3.815809 AGACAAAATGACCTCCGAACAA 58.184 40.909 0.00 0.00 0.00 2.83
2954 3183 3.888930 ACAAAATGACCTCCGAACAATGT 59.111 39.130 0.00 0.00 0.00 2.71
2958 3187 4.819105 ATGACCTCCGAACAATGTAGAA 57.181 40.909 0.00 0.00 0.00 2.10
2971 3201 9.107367 CGAACAATGTAGAATTCAAACTTTCTC 57.893 33.333 8.44 7.71 34.22 2.87
2979 3209 3.864789 TTCAAACTTTCTCAGAGGCCT 57.135 42.857 3.86 3.86 0.00 5.19
2980 3210 3.131709 TCAAACTTTCTCAGAGGCCTG 57.868 47.619 12.00 0.00 41.74 4.85
2981 3211 2.705658 TCAAACTTTCTCAGAGGCCTGA 59.294 45.455 12.00 1.01 46.48 3.86
3012 3242 3.130164 TCCTGAGAGCTCTTCAAATCTCG 59.870 47.826 19.36 4.64 40.87 4.04
3017 3247 4.249661 AGAGCTCTTCAAATCTCGAAACC 58.750 43.478 11.45 0.00 0.00 3.27
3021 3251 6.352516 AGCTCTTCAAATCTCGAAACCATAT 58.647 36.000 0.00 0.00 0.00 1.78
3055 3285 0.800631 ACATCACGCACTCAAGCATG 59.199 50.000 0.00 0.00 0.00 4.06
3135 3370 2.111384 GTTCACTCCTGGGCTCATCTA 58.889 52.381 0.00 0.00 0.00 1.98
3161 3396 1.518903 GGAGCCAAAACGCTGCTTCT 61.519 55.000 0.00 0.00 43.31 2.85
3165 3400 0.239347 CCAAAACGCTGCTTCTCTGG 59.761 55.000 0.00 0.00 0.00 3.86
3248 3483 9.877178 TTCTTTTGTCTAGATGAACCTAGATTC 57.123 33.333 0.00 0.00 44.70 2.52
3295 3530 5.215252 TCCATTACTATGCTCTAGGTTGC 57.785 43.478 0.00 0.00 0.00 4.17
3310 3545 4.307032 AGGTTGCATATTGGAGACTGTT 57.693 40.909 0.00 0.00 0.00 3.16
3408 3647 8.668510 AATGTGCTAGTATTGAATTGTCTAGG 57.331 34.615 10.98 0.00 31.72 3.02
3428 3667 2.092429 GGACTCTTGGGTGCATGGAATA 60.092 50.000 0.00 0.00 0.00 1.75
3435 3674 5.127519 TCTTGGGTGCATGGAATAGATTTTG 59.872 40.000 0.00 0.00 0.00 2.44
3438 3677 5.248020 TGGGTGCATGGAATAGATTTTGTTT 59.752 36.000 0.00 0.00 0.00 2.83
3439 3678 6.172630 GGGTGCATGGAATAGATTTTGTTTT 58.827 36.000 0.00 0.00 0.00 2.43
3440 3679 6.654582 GGGTGCATGGAATAGATTTTGTTTTT 59.345 34.615 0.00 0.00 0.00 1.94
3443 3682 6.589523 TGCATGGAATAGATTTTGTTTTTCCG 59.410 34.615 0.00 0.00 36.30 4.30
3482 3722 9.358123 CGCTATATAAATTTCTCAAACTTGTCG 57.642 33.333 0.00 0.00 0.00 4.35
3522 3762 4.109050 TCTTTGCGTTTTTCATGAACCAC 58.891 39.130 7.89 6.87 0.00 4.16
3543 3783 4.644234 CACATATGGGATGCCAAACACTTA 59.356 41.667 11.10 0.00 0.00 2.24
3572 3812 9.774742 CAGTTTTGTTGGCTCTAAATAGAATAC 57.225 33.333 0.00 0.00 0.00 1.89
3634 3874 2.912967 GCAGATGCATTGTTTTGACTCG 59.087 45.455 0.00 0.00 41.59 4.18
3641 3881 3.612479 GCATTGTTTTGACTCGGCAATCT 60.612 43.478 0.00 0.00 0.00 2.40
3669 3909 2.551270 ACCAAGAGAAGATGCCTACCA 58.449 47.619 0.00 0.00 0.00 3.25
3721 3961 3.264706 TCAAAATGACGGGGTTCTATGGA 59.735 43.478 0.00 0.00 0.00 3.41
3811 4051 3.318313 AGATCCGGTGGTGAGGAATAAT 58.682 45.455 0.00 0.00 40.32 1.28
3845 4085 0.245539 CATGGGTGGAGCAAAGCAAG 59.754 55.000 0.00 0.00 0.00 4.01
3847 4087 0.112995 TGGGTGGAGCAAAGCAAGAT 59.887 50.000 0.00 0.00 0.00 2.40
3904 4144 3.032017 TCGAGGCAAGAGTTCAGAAAG 57.968 47.619 0.00 0.00 0.00 2.62
3956 4196 6.494893 TGAAACTATGTTGCAGGTGTATTC 57.505 37.500 0.00 0.00 0.00 1.75
3959 4199 7.549134 TGAAACTATGTTGCAGGTGTATTCTAG 59.451 37.037 0.00 0.00 0.00 2.43
3987 4227 6.575162 TTTGTTTTAAGGAAGGAGAGATGC 57.425 37.500 0.00 0.00 0.00 3.91
3988 4228 4.589908 TGTTTTAAGGAAGGAGAGATGCC 58.410 43.478 0.00 0.00 0.00 4.40
3989 4229 4.042809 TGTTTTAAGGAAGGAGAGATGCCA 59.957 41.667 0.00 0.00 0.00 4.92
3990 4230 4.927267 TTTAAGGAAGGAGAGATGCCAA 57.073 40.909 0.00 0.00 0.00 4.52
3991 4231 5.456921 TTTAAGGAAGGAGAGATGCCAAT 57.543 39.130 0.00 0.00 0.00 3.16
3992 4232 6.575244 TTTAAGGAAGGAGAGATGCCAATA 57.425 37.500 0.00 0.00 0.00 1.90
3993 4233 4.703379 AAGGAAGGAGAGATGCCAATAG 57.297 45.455 0.00 0.00 0.00 1.73
3994 4234 3.933886 AGGAAGGAGAGATGCCAATAGA 58.066 45.455 0.00 0.00 0.00 1.98
3995 4235 4.501433 AGGAAGGAGAGATGCCAATAGAT 58.499 43.478 0.00 0.00 0.00 1.98
3996 4236 4.286549 AGGAAGGAGAGATGCCAATAGATG 59.713 45.833 0.00 0.00 0.00 2.90
3997 4237 4.041444 GGAAGGAGAGATGCCAATAGATGT 59.959 45.833 0.00 0.00 0.00 3.06
3998 4238 5.455899 GGAAGGAGAGATGCCAATAGATGTT 60.456 44.000 0.00 0.00 0.00 2.71
3999 4239 5.643421 AGGAGAGATGCCAATAGATGTTT 57.357 39.130 0.00 0.00 0.00 2.83
4000 4240 6.011122 AGGAGAGATGCCAATAGATGTTTT 57.989 37.500 0.00 0.00 0.00 2.43
4001 4241 6.430007 AGGAGAGATGCCAATAGATGTTTTT 58.570 36.000 0.00 0.00 0.00 1.94
4052 4292 2.915604 TGAAGGAAGGAGCTCAGGAAAT 59.084 45.455 17.19 0.00 0.00 2.17
4157 4403 5.006386 GGATACTTGCTAATGCTAAGCCAT 58.994 41.667 3.59 0.00 39.30 4.40
4159 4405 2.954318 ACTTGCTAATGCTAAGCCATGG 59.046 45.455 7.63 7.63 39.30 3.66
4164 4410 3.381272 GCTAATGCTAAGCCATGGACAAA 59.619 43.478 18.40 0.00 33.73 2.83
4173 5154 1.135199 GCCATGGACAAAGTCTGCATG 60.135 52.381 18.40 8.50 34.42 4.06
4178 5159 3.076621 TGGACAAAGTCTGCATGATGTC 58.923 45.455 0.00 8.77 37.14 3.06
4212 5195 3.454812 AGTAATAAGGGCATCTCCAACGT 59.545 43.478 0.00 0.00 36.21 3.99
4227 5234 0.464916 AACGTTGGTCCTTGGACACC 60.465 55.000 19.90 6.38 0.00 4.16
4229 5236 1.599797 GTTGGTCCTTGGACACCGG 60.600 63.158 19.90 0.00 35.15 5.28
4274 5281 3.016031 TGACCGCATACATTTCAGCAAT 58.984 40.909 0.00 0.00 0.00 3.56
4310 5328 2.837878 CGTGCAAACAATACGGATTTCG 59.162 45.455 0.00 0.00 45.88 3.46
4340 5358 2.068519 GACGACATTCATGCAGACACA 58.931 47.619 0.00 0.00 0.00 3.72
4440 5468 2.654896 AGCCCTTGTTATTCCCTTCCTT 59.345 45.455 0.00 0.00 0.00 3.36
4453 5481 1.196012 CTTCCTTAGACCGCCTCCTT 58.804 55.000 0.00 0.00 0.00 3.36
4498 5528 3.270877 GGCGATAAGACTGGTGAAATGT 58.729 45.455 0.00 0.00 0.00 2.71
4596 5637 1.139654 TGCCATACTCACCATCAGAGC 59.860 52.381 0.00 0.00 36.58 4.09
4673 5714 0.179100 CAATGCTCTCGTCGTCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
4692 5733 3.299977 GGGCCGCCCGAAAGTTTT 61.300 61.111 14.19 0.00 32.13 2.43
4723 5774 1.068748 GTAGGAGCGTTGTTCTCGTCA 60.069 52.381 0.00 0.00 31.92 4.35
4911 5977 5.282055 TGCTCTAGGAGGAATATGTTGTG 57.718 43.478 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.163476 GGTCGCTCCTTTGGATTTTATTTTT 58.837 36.000 0.00 0.00 0.00 1.94
37 38 5.245075 TGGTCGCTCCTTTGGATTTTATTTT 59.755 36.000 0.00 0.00 37.07 1.82
38 39 4.770010 TGGTCGCTCCTTTGGATTTTATTT 59.230 37.500 0.00 0.00 37.07 1.40
39 40 4.340617 TGGTCGCTCCTTTGGATTTTATT 58.659 39.130 0.00 0.00 37.07 1.40
40 41 3.947834 CTGGTCGCTCCTTTGGATTTTAT 59.052 43.478 0.00 0.00 37.07 1.40
41 42 3.008594 TCTGGTCGCTCCTTTGGATTTTA 59.991 43.478 0.00 0.00 37.07 1.52
42 43 2.162681 CTGGTCGCTCCTTTGGATTTT 58.837 47.619 0.00 0.00 37.07 1.82
43 44 1.351017 TCTGGTCGCTCCTTTGGATTT 59.649 47.619 0.00 0.00 37.07 2.17
44 45 0.984230 TCTGGTCGCTCCTTTGGATT 59.016 50.000 0.00 0.00 37.07 3.01
45 46 0.539051 CTCTGGTCGCTCCTTTGGAT 59.461 55.000 0.00 0.00 37.07 3.41
46 47 1.975327 CTCTGGTCGCTCCTTTGGA 59.025 57.895 0.00 0.00 37.07 3.53
47 48 1.743252 GCTCTGGTCGCTCCTTTGG 60.743 63.158 0.00 0.00 37.07 3.28
48 49 2.097038 CGCTCTGGTCGCTCCTTTG 61.097 63.158 0.00 0.00 37.07 2.77
49 50 2.262915 CGCTCTGGTCGCTCCTTT 59.737 61.111 0.00 0.00 37.07 3.11
56 57 3.175240 CTTGACGCGCTCTGGTCG 61.175 66.667 5.73 0.00 35.95 4.79
57 58 2.049063 ACTTGACGCGCTCTGGTC 60.049 61.111 5.73 5.97 0.00 4.02
58 59 2.356313 CACTTGACGCGCTCTGGT 60.356 61.111 5.73 0.00 0.00 4.00
59 60 3.114616 CCACTTGACGCGCTCTGG 61.115 66.667 5.73 3.67 0.00 3.86
60 61 3.782244 GCCACTTGACGCGCTCTG 61.782 66.667 5.73 0.00 0.00 3.35
91 92 4.638895 AAAAGGGGCACTGGGGGC 62.639 66.667 0.00 0.00 0.00 5.80
92 93 2.204034 AAAAAGGGGCACTGGGGG 59.796 61.111 0.00 0.00 0.00 5.40
108 109 3.053077 TCAGAAGACCTCCCCTCAAAAA 58.947 45.455 0.00 0.00 0.00 1.94
109 110 2.701551 TCAGAAGACCTCCCCTCAAAA 58.298 47.619 0.00 0.00 0.00 2.44
110 111 2.415983 TCAGAAGACCTCCCCTCAAA 57.584 50.000 0.00 0.00 0.00 2.69
111 112 2.260822 CTTCAGAAGACCTCCCCTCAA 58.739 52.381 3.82 0.00 0.00 3.02
112 113 1.553417 CCTTCAGAAGACCTCCCCTCA 60.553 57.143 12.14 0.00 0.00 3.86
113 114 1.199615 CCTTCAGAAGACCTCCCCTC 58.800 60.000 12.14 0.00 0.00 4.30
114 115 0.793617 TCCTTCAGAAGACCTCCCCT 59.206 55.000 12.14 0.00 0.00 4.79
115 116 1.657804 TTCCTTCAGAAGACCTCCCC 58.342 55.000 12.14 0.00 0.00 4.81
116 117 4.034410 AGTATTCCTTCAGAAGACCTCCC 58.966 47.826 12.14 0.00 45.94 4.30
117 118 4.100344 GGAGTATTCCTTCAGAAGACCTCC 59.900 50.000 12.14 12.87 45.94 4.30
118 119 5.270893 GGAGTATTCCTTCAGAAGACCTC 57.729 47.826 12.14 8.39 45.94 3.85
143 144 7.039434 TGGATTGCTTACCATATGTGTCAAAAA 60.039 33.333 1.24 0.00 0.00 1.94
144 145 6.435591 TGGATTGCTTACCATATGTGTCAAAA 59.564 34.615 1.24 0.00 0.00 2.44
145 146 5.948758 TGGATTGCTTACCATATGTGTCAAA 59.051 36.000 1.24 0.00 0.00 2.69
146 147 5.504853 TGGATTGCTTACCATATGTGTCAA 58.495 37.500 1.24 1.71 0.00 3.18
147 148 5.109500 TGGATTGCTTACCATATGTGTCA 57.891 39.130 1.24 0.00 0.00 3.58
148 149 6.127758 TGTTTGGATTGCTTACCATATGTGTC 60.128 38.462 1.24 0.00 36.02 3.67
149 150 5.714333 TGTTTGGATTGCTTACCATATGTGT 59.286 36.000 1.24 2.24 36.02 3.72
150 151 6.206395 TGTTTGGATTGCTTACCATATGTG 57.794 37.500 1.24 0.00 36.02 3.21
151 152 6.849085 TTGTTTGGATTGCTTACCATATGT 57.151 33.333 1.24 0.00 36.02 2.29
152 153 7.980662 TGAATTGTTTGGATTGCTTACCATATG 59.019 33.333 0.00 0.00 36.02 1.78
153 154 8.076910 TGAATTGTTTGGATTGCTTACCATAT 57.923 30.769 0.00 0.00 36.02 1.78
154 155 7.473735 TGAATTGTTTGGATTGCTTACCATA 57.526 32.000 0.00 0.00 36.02 2.74
155 156 6.357579 TGAATTGTTTGGATTGCTTACCAT 57.642 33.333 0.00 0.00 36.02 3.55
156 157 5.798125 TGAATTGTTTGGATTGCTTACCA 57.202 34.783 0.00 0.00 0.00 3.25
157 158 7.489574 TTTTGAATTGTTTGGATTGCTTACC 57.510 32.000 0.00 0.00 0.00 2.85
194 195 5.621193 ACCTGAGAGCAGCTAACTTAAAAA 58.379 37.500 0.00 0.00 40.91 1.94
195 196 5.228945 ACCTGAGAGCAGCTAACTTAAAA 57.771 39.130 0.00 0.00 40.91 1.52
196 197 4.891992 ACCTGAGAGCAGCTAACTTAAA 57.108 40.909 0.00 0.00 40.91 1.52
197 198 4.891992 AACCTGAGAGCAGCTAACTTAA 57.108 40.909 0.00 0.00 40.91 1.85
198 199 6.341316 CAATAACCTGAGAGCAGCTAACTTA 58.659 40.000 0.00 0.00 40.91 2.24
199 200 5.181748 CAATAACCTGAGAGCAGCTAACTT 58.818 41.667 0.00 0.00 40.91 2.66
200 201 4.383552 CCAATAACCTGAGAGCAGCTAACT 60.384 45.833 0.00 0.00 40.91 2.24
201 202 3.873952 CCAATAACCTGAGAGCAGCTAAC 59.126 47.826 0.00 0.00 40.91 2.34
202 203 3.118261 CCCAATAACCTGAGAGCAGCTAA 60.118 47.826 0.00 0.00 40.91 3.09
203 204 2.435805 CCCAATAACCTGAGAGCAGCTA 59.564 50.000 0.00 0.00 40.91 3.32
204 205 1.211457 CCCAATAACCTGAGAGCAGCT 59.789 52.381 0.00 0.00 40.91 4.24
205 206 1.065126 ACCCAATAACCTGAGAGCAGC 60.065 52.381 0.00 0.00 40.91 5.25
206 207 3.012518 CAACCCAATAACCTGAGAGCAG 58.987 50.000 0.00 0.00 41.93 4.24
207 208 2.642311 TCAACCCAATAACCTGAGAGCA 59.358 45.455 0.00 0.00 0.00 4.26
208 209 3.350219 TCAACCCAATAACCTGAGAGC 57.650 47.619 0.00 0.00 0.00 4.09
209 210 4.702131 CCTTTCAACCCAATAACCTGAGAG 59.298 45.833 0.00 0.00 0.00 3.20
210 211 4.662278 CCTTTCAACCCAATAACCTGAGA 58.338 43.478 0.00 0.00 0.00 3.27
211 212 3.193479 GCCTTTCAACCCAATAACCTGAG 59.807 47.826 0.00 0.00 0.00 3.35
212 213 3.161866 GCCTTTCAACCCAATAACCTGA 58.838 45.455 0.00 0.00 0.00 3.86
213 214 2.094752 CGCCTTTCAACCCAATAACCTG 60.095 50.000 0.00 0.00 0.00 4.00
214 215 2.167662 CGCCTTTCAACCCAATAACCT 58.832 47.619 0.00 0.00 0.00 3.50
215 216 1.890489 ACGCCTTTCAACCCAATAACC 59.110 47.619 0.00 0.00 0.00 2.85
216 217 2.924880 GCACGCCTTTCAACCCAATAAC 60.925 50.000 0.00 0.00 0.00 1.89
217 218 1.271102 GCACGCCTTTCAACCCAATAA 59.729 47.619 0.00 0.00 0.00 1.40
218 219 0.885196 GCACGCCTTTCAACCCAATA 59.115 50.000 0.00 0.00 0.00 1.90
219 220 1.665442 GCACGCCTTTCAACCCAAT 59.335 52.632 0.00 0.00 0.00 3.16
220 221 2.840066 CGCACGCCTTTCAACCCAA 61.840 57.895 0.00 0.00 0.00 4.12
221 222 3.283684 CGCACGCCTTTCAACCCA 61.284 61.111 0.00 0.00 0.00 4.51
222 223 2.065906 TTTCGCACGCCTTTCAACCC 62.066 55.000 0.00 0.00 0.00 4.11
223 224 0.039527 ATTTCGCACGCCTTTCAACC 60.040 50.000 0.00 0.00 0.00 3.77
224 225 1.766069 AATTTCGCACGCCTTTCAAC 58.234 45.000 0.00 0.00 0.00 3.18
225 226 2.500509 AAATTTCGCACGCCTTTCAA 57.499 40.000 0.00 0.00 0.00 2.69
226 227 2.500509 AAAATTTCGCACGCCTTTCA 57.499 40.000 0.00 0.00 0.00 2.69
227 228 4.857037 AGATAAAAATTTCGCACGCCTTTC 59.143 37.500 0.00 0.00 0.00 2.62
228 229 4.805219 AGATAAAAATTTCGCACGCCTTT 58.195 34.783 0.00 0.00 0.00 3.11
229 230 4.083003 TGAGATAAAAATTTCGCACGCCTT 60.083 37.500 0.00 0.00 0.00 4.35
230 231 3.438781 TGAGATAAAAATTTCGCACGCCT 59.561 39.130 0.00 0.00 0.00 5.52
231 232 3.542310 GTGAGATAAAAATTTCGCACGCC 59.458 43.478 0.00 0.00 33.96 5.68
232 233 4.155449 TGTGAGATAAAAATTTCGCACGC 58.845 39.130 7.08 0.00 43.09 5.34
233 234 6.676385 CAATGTGAGATAAAAATTTCGCACG 58.324 36.000 7.08 0.00 43.09 5.34
234 235 6.089283 TGCAATGTGAGATAAAAATTTCGCAC 59.911 34.615 5.17 5.17 41.32 5.34
235 236 6.155136 TGCAATGTGAGATAAAAATTTCGCA 58.845 32.000 0.00 0.00 34.91 5.10
236 237 6.630676 TGCAATGTGAGATAAAAATTTCGC 57.369 33.333 0.00 0.00 0.00 4.70
237 238 8.111836 CCATTGCAATGTGAGATAAAAATTTCG 58.888 33.333 31.87 11.26 34.60 3.46
238 239 8.938906 ACCATTGCAATGTGAGATAAAAATTTC 58.061 29.630 31.87 0.00 34.60 2.17
239 240 8.851541 ACCATTGCAATGTGAGATAAAAATTT 57.148 26.923 31.87 6.18 34.60 1.82
240 241 8.851541 AACCATTGCAATGTGAGATAAAAATT 57.148 26.923 31.87 11.70 34.60 1.82
242 243 9.941325 AATAACCATTGCAATGTGAGATAAAAA 57.059 25.926 31.87 10.25 34.60 1.94
243 244 9.368674 CAATAACCATTGCAATGTGAGATAAAA 57.631 29.630 31.87 11.48 35.44 1.52
244 245 8.747471 TCAATAACCATTGCAATGTGAGATAAA 58.253 29.630 31.87 12.68 41.21 1.40
245 246 8.291191 TCAATAACCATTGCAATGTGAGATAA 57.709 30.769 31.87 13.92 41.21 1.75
246 247 7.557358 ACTCAATAACCATTGCAATGTGAGATA 59.443 33.333 37.76 24.26 41.21 1.98
247 248 6.379133 ACTCAATAACCATTGCAATGTGAGAT 59.621 34.615 37.76 27.13 41.21 2.75
248 249 5.711506 ACTCAATAACCATTGCAATGTGAGA 59.288 36.000 37.76 25.35 41.21 3.27
249 250 5.957798 ACTCAATAACCATTGCAATGTGAG 58.042 37.500 33.60 33.60 41.21 3.51
250 251 5.391843 CGACTCAATAACCATTGCAATGTGA 60.392 40.000 31.87 26.22 41.21 3.58
251 252 4.794762 CGACTCAATAACCATTGCAATGTG 59.205 41.667 31.87 25.46 41.21 3.21
252 253 4.699735 TCGACTCAATAACCATTGCAATGT 59.300 37.500 31.87 20.13 41.21 2.71
253 254 5.233957 TCGACTCAATAACCATTGCAATG 57.766 39.130 28.91 28.91 41.21 2.82
254 255 5.163622 CCTTCGACTCAATAACCATTGCAAT 60.164 40.000 5.99 5.99 41.21 3.56
255 256 4.155826 CCTTCGACTCAATAACCATTGCAA 59.844 41.667 0.00 0.00 41.21 4.08
256 257 3.689161 CCTTCGACTCAATAACCATTGCA 59.311 43.478 0.00 0.00 41.21 4.08
257 258 3.487544 GCCTTCGACTCAATAACCATTGC 60.488 47.826 0.00 0.00 41.21 3.56
258 259 3.065371 GGCCTTCGACTCAATAACCATTG 59.935 47.826 0.00 0.00 42.55 2.82
259 260 3.279434 GGCCTTCGACTCAATAACCATT 58.721 45.455 0.00 0.00 0.00 3.16
260 261 2.421529 GGGCCTTCGACTCAATAACCAT 60.422 50.000 0.84 0.00 0.00 3.55
261 262 1.065709 GGGCCTTCGACTCAATAACCA 60.066 52.381 0.84 0.00 0.00 3.67
262 263 1.065709 TGGGCCTTCGACTCAATAACC 60.066 52.381 4.53 0.00 0.00 2.85
263 264 2.396590 TGGGCCTTCGACTCAATAAC 57.603 50.000 4.53 0.00 0.00 1.89
264 265 3.644966 AATGGGCCTTCGACTCAATAA 57.355 42.857 4.53 0.00 0.00 1.40
265 266 4.080807 TGTTAATGGGCCTTCGACTCAATA 60.081 41.667 4.53 0.00 0.00 1.90
266 267 3.279434 GTTAATGGGCCTTCGACTCAAT 58.721 45.455 4.53 0.00 0.00 2.57
267 268 2.039216 TGTTAATGGGCCTTCGACTCAA 59.961 45.455 4.53 0.00 0.00 3.02
268 269 1.626321 TGTTAATGGGCCTTCGACTCA 59.374 47.619 4.53 0.00 0.00 3.41
269 270 2.396590 TGTTAATGGGCCTTCGACTC 57.603 50.000 4.53 0.00 0.00 3.36
270 271 2.039879 ACTTGTTAATGGGCCTTCGACT 59.960 45.455 4.53 0.00 0.00 4.18
271 272 2.433436 ACTTGTTAATGGGCCTTCGAC 58.567 47.619 4.53 1.66 0.00 4.20
272 273 2.871096 ACTTGTTAATGGGCCTTCGA 57.129 45.000 4.53 0.00 0.00 3.71
273 274 3.606687 AGTACTTGTTAATGGGCCTTCG 58.393 45.455 4.53 0.00 0.00 3.79
274 275 3.945921 GGAGTACTTGTTAATGGGCCTTC 59.054 47.826 4.53 0.00 0.00 3.46
275 276 3.621461 CGGAGTACTTGTTAATGGGCCTT 60.621 47.826 4.53 0.00 0.00 4.35
276 277 2.093128 CGGAGTACTTGTTAATGGGCCT 60.093 50.000 4.53 0.00 0.00 5.19
277 278 2.285977 CGGAGTACTTGTTAATGGGCC 58.714 52.381 0.00 0.00 0.00 5.80
278 279 2.981898 ACGGAGTACTTGTTAATGGGC 58.018 47.619 0.00 0.00 41.94 5.36
298 299 9.538508 GCCGGTACTTTTATATTTCTTTAGAGA 57.461 33.333 1.90 0.00 0.00 3.10
299 300 8.771766 GGCCGGTACTTTTATATTTCTTTAGAG 58.228 37.037 1.90 0.00 0.00 2.43
300 301 7.439056 CGGCCGGTACTTTTATATTTCTTTAGA 59.561 37.037 20.10 0.00 0.00 2.10
301 302 7.307573 CCGGCCGGTACTTTTATATTTCTTTAG 60.308 40.741 36.64 2.02 0.00 1.85
302 303 6.482973 CCGGCCGGTACTTTTATATTTCTTTA 59.517 38.462 36.64 0.00 0.00 1.85
303 304 5.297527 CCGGCCGGTACTTTTATATTTCTTT 59.702 40.000 36.64 0.00 0.00 2.52
304 305 4.818005 CCGGCCGGTACTTTTATATTTCTT 59.182 41.667 36.64 0.00 0.00 2.52
305 306 4.383173 CCGGCCGGTACTTTTATATTTCT 58.617 43.478 36.64 0.00 0.00 2.52
306 307 3.499537 CCCGGCCGGTACTTTTATATTTC 59.500 47.826 40.52 0.00 0.00 2.17
307 308 3.479489 CCCGGCCGGTACTTTTATATTT 58.521 45.455 40.52 0.00 0.00 1.40
308 309 2.811504 GCCCGGCCGGTACTTTTATATT 60.812 50.000 40.52 0.00 0.00 1.28
309 310 1.271001 GCCCGGCCGGTACTTTTATAT 60.271 52.381 40.52 0.00 0.00 0.86
310 311 0.106521 GCCCGGCCGGTACTTTTATA 59.893 55.000 40.52 0.00 0.00 0.98
311 312 1.153107 GCCCGGCCGGTACTTTTAT 60.153 57.895 40.52 0.00 0.00 1.40
312 313 2.268600 GCCCGGCCGGTACTTTTA 59.731 61.111 40.52 0.00 0.00 1.52
313 314 4.728110 GGCCCGGCCGGTACTTTT 62.728 66.667 40.52 0.00 39.62 2.27
370 371 3.336138 AAGGAAGACGATGGAAAGACC 57.664 47.619 0.00 0.00 39.54 3.85
371 372 3.866327 GCTAAGGAAGACGATGGAAAGAC 59.134 47.826 0.00 0.00 0.00 3.01
372 373 3.118738 GGCTAAGGAAGACGATGGAAAGA 60.119 47.826 0.00 0.00 0.00 2.52
373 374 3.198872 GGCTAAGGAAGACGATGGAAAG 58.801 50.000 0.00 0.00 0.00 2.62
374 375 3.261981 GGCTAAGGAAGACGATGGAAA 57.738 47.619 0.00 0.00 0.00 3.13
405 423 1.587043 GAAGGGAGGAAAACCTGCGC 61.587 60.000 0.00 0.00 37.13 6.09
406 424 0.960861 GGAAGGGAGGAAAACCTGCG 60.961 60.000 0.00 0.00 37.13 5.18
407 425 0.405973 AGGAAGGGAGGAAAACCTGC 59.594 55.000 0.00 0.00 37.13 4.85
461 479 2.269940 CAGAAAGAAAGAGGGGAGGGA 58.730 52.381 0.00 0.00 0.00 4.20
464 482 1.340502 GGCCAGAAAGAAAGAGGGGAG 60.341 57.143 0.00 0.00 0.00 4.30
478 496 0.404040 AAAACGAATCCAGGGCCAGA 59.596 50.000 6.18 1.64 0.00 3.86
483 501 0.719465 CGACGAAAACGAATCCAGGG 59.281 55.000 0.00 0.00 0.00 4.45
486 504 0.940519 ACGCGACGAAAACGAATCCA 60.941 50.000 15.93 0.00 0.00 3.41
487 505 0.246642 GACGCGACGAAAACGAATCC 60.247 55.000 15.93 0.00 0.00 3.01
493 512 2.188124 GTGTAAGACGCGACGAAAAC 57.812 50.000 15.93 5.92 0.00 2.43
534 553 2.812358 ACTGCAAAAATTTCGGACCC 57.188 45.000 0.00 0.00 0.00 4.46
541 560 8.495148 GGAACAATCGATTTACTGCAAAAATTT 58.505 29.630 8.21 0.00 0.00 1.82
543 562 7.151308 TGGAACAATCGATTTACTGCAAAAAT 58.849 30.769 8.21 6.43 31.92 1.82
656 675 4.263068 CCCATCTCAAACAACTACTCCAGT 60.263 45.833 0.00 0.00 40.05 4.00
659 678 3.010420 GCCCATCTCAAACAACTACTCC 58.990 50.000 0.00 0.00 0.00 3.85
660 679 3.944087 AGCCCATCTCAAACAACTACTC 58.056 45.455 0.00 0.00 0.00 2.59
675 694 3.181439 GGTAATTGCTAGGAGAAGCCCAT 60.181 47.826 0.00 0.00 42.05 4.00
683 702 6.349300 ACAGTACAATGGTAATTGCTAGGAG 58.651 40.000 0.00 0.00 46.06 3.69
687 706 9.899661 AAGAATACAGTACAATGGTAATTGCTA 57.100 29.630 0.00 0.00 46.06 3.49
732 751 8.750298 AGAGTGCACATTAATAACACTAGTAGT 58.250 33.333 21.04 0.00 41.45 2.73
755 776 1.042229 AGAGCATGCTAGCAGGAGAG 58.958 55.000 32.02 15.09 36.85 3.20
817 838 5.396485 TCCAATCCAATCCAATCCATTAGG 58.604 41.667 0.00 0.00 0.00 2.69
822 843 4.268828 ACATCCAATCCAATCCAATCCA 57.731 40.909 0.00 0.00 0.00 3.41
823 844 6.729690 TTAACATCCAATCCAATCCAATCC 57.270 37.500 0.00 0.00 0.00 3.01
824 845 7.954835 TGATTAACATCCAATCCAATCCAATC 58.045 34.615 0.00 0.00 32.46 2.67
825 846 7.917730 TGATTAACATCCAATCCAATCCAAT 57.082 32.000 0.00 0.00 32.46 3.16
826 847 7.730672 TTGATTAACATCCAATCCAATCCAA 57.269 32.000 0.00 0.00 32.46 3.53
870 891 8.984891 TTTTGCATAACTAATTGGTTCATCTG 57.015 30.769 10.79 6.34 0.00 2.90
923 944 1.550327 AAAAGGAGGCTTGCCTTAGC 58.450 50.000 15.92 3.01 44.72 3.09
975 1003 6.322969 TCACCGGAGTAAAATTGCTAGATCTA 59.677 38.462 9.46 1.69 0.00 1.98
996 1024 1.000843 GGGGCACTTGTTTTCATCACC 59.999 52.381 0.00 0.00 0.00 4.02
1008 1036 2.520741 CAAACCACGGGGGCACTT 60.521 61.111 9.50 0.00 42.05 3.16
1018 1046 2.197324 TCCCTGCCCACAAACCAC 59.803 61.111 0.00 0.00 0.00 4.16
1038 1066 3.543680 ATGGAACGACGATCAATCCTT 57.456 42.857 0.00 0.00 0.00 3.36
1050 1078 8.508875 GTCATCTTAAAAGGTTTTATGGAACGA 58.491 33.333 0.00 4.23 33.12 3.85
1073 1101 5.131642 AGCTGAATATCCTTGGATCTTGTCA 59.868 40.000 5.30 5.22 0.00 3.58
1090 1118 4.716784 TGTAGGTAGATGGTGAAGCTGAAT 59.283 41.667 0.00 0.00 0.00 2.57
1152 1180 6.252995 AGTATTATCACCCTTGCCTGAAAAA 58.747 36.000 0.00 0.00 0.00 1.94
1154 1182 5.450818 AGTATTATCACCCTTGCCTGAAA 57.549 39.130 0.00 0.00 0.00 2.69
1155 1183 5.192927 CAAGTATTATCACCCTTGCCTGAA 58.807 41.667 0.00 0.00 0.00 3.02
1157 1185 4.526970 ACAAGTATTATCACCCTTGCCTG 58.473 43.478 0.00 0.00 38.24 4.85
1158 1186 4.862641 ACAAGTATTATCACCCTTGCCT 57.137 40.909 0.00 0.00 38.24 4.75
1159 1187 4.338400 GGAACAAGTATTATCACCCTTGCC 59.662 45.833 0.00 0.00 38.24 4.52
1160 1188 5.193679 AGGAACAAGTATTATCACCCTTGC 58.806 41.667 0.00 0.00 38.24 4.01
1161 1189 6.316390 GTGAGGAACAAGTATTATCACCCTTG 59.684 42.308 0.00 0.00 40.05 3.61
1203 1247 4.823989 CCCATGTTCAAGTCTCAGTTCTTT 59.176 41.667 0.00 0.00 0.00 2.52
1204 1248 4.141390 ACCCATGTTCAAGTCTCAGTTCTT 60.141 41.667 0.00 0.00 0.00 2.52
1205 1249 3.392616 ACCCATGTTCAAGTCTCAGTTCT 59.607 43.478 0.00 0.00 0.00 3.01
1206 1250 3.499918 CACCCATGTTCAAGTCTCAGTTC 59.500 47.826 0.00 0.00 0.00 3.01
1258 1302 2.014857 CAGTGGCTCTCATCAATGTGG 58.985 52.381 0.00 0.00 0.00 4.17
1267 1311 3.569701 GGAAAACAAATCAGTGGCTCTCA 59.430 43.478 0.00 0.00 0.00 3.27
1275 1319 6.524734 GGAAGGAATTGGAAAACAAATCAGT 58.475 36.000 0.00 0.00 43.46 3.41
1314 1359 9.981114 TCATTGTCAATTGTGATAGTATACGAT 57.019 29.630 5.13 0.00 35.80 3.73
1329 1374 4.933400 GCATGGCTTCTTTCATTGTCAATT 59.067 37.500 0.00 0.00 0.00 2.32
1371 1416 2.057922 TCCAAAGCCTTCTCCACTTCT 58.942 47.619 0.00 0.00 0.00 2.85
1381 1426 2.179427 GGGTAGCATTTCCAAAGCCTT 58.821 47.619 0.00 0.00 0.00 4.35
1425 1470 1.011968 GGCGTTACTGCGACACATCA 61.012 55.000 0.00 0.00 40.13 3.07
1490 1538 0.950555 TGTCGCTGGATGCTGTTGAC 60.951 55.000 10.06 10.06 40.11 3.18
1589 1637 1.126846 CGACGAGGCACAGAAATTGAC 59.873 52.381 0.00 0.00 0.00 3.18
1630 1678 0.105964 TCGGCCCTGGACATAAATCG 59.894 55.000 0.00 0.00 0.00 3.34
1754 1802 1.451028 GGTGATCAGGAGGCAGTGC 60.451 63.158 6.55 6.55 0.00 4.40
1835 1883 2.182537 GCATTTTGGGAGCAGGCG 59.817 61.111 0.00 0.00 0.00 5.52
1929 1977 3.377172 ACAGTACTTGACCTGCAAACAAC 59.623 43.478 0.00 0.00 35.74 3.32
1988 2036 0.664166 CCAGCGAACACAAACATGGC 60.664 55.000 0.00 0.00 0.00 4.40
2050 2098 2.672307 AAGTCGACCGTCGCCTCT 60.672 61.111 16.24 10.85 40.21 3.69
2182 2230 1.538876 AGGCAGGCACCTTCCAGTA 60.539 57.895 8.14 0.00 36.28 2.74
2241 2289 4.021719 AGTGAAACAAGAATGAGCCAATGG 60.022 41.667 0.00 0.00 41.43 3.16
2366 2421 1.630878 AGAATCCCACCAGTGACTTCC 59.369 52.381 0.00 0.00 0.00 3.46
2602 2658 2.282039 CGAAATTGCCCCCTGCCAA 61.282 57.895 0.00 0.00 40.16 4.52
2604 2660 3.460868 CCGAAATTGCCCCCTGCC 61.461 66.667 0.00 0.00 40.16 4.85
2606 2662 2.052104 GGACCGAAATTGCCCCCTG 61.052 63.158 0.00 0.00 0.00 4.45
2607 2663 0.917333 TAGGACCGAAATTGCCCCCT 60.917 55.000 0.00 0.00 0.00 4.79
2608 2664 0.465642 CTAGGACCGAAATTGCCCCC 60.466 60.000 0.00 0.00 0.00 5.40
2619 2675 3.635373 TGCAGGTAGTAAATCTAGGACCG 59.365 47.826 0.00 0.00 30.07 4.79
2628 2684 1.411246 TCGCCGATGCAGGTAGTAAAT 59.589 47.619 0.00 0.00 37.32 1.40
2637 2693 4.732285 ATAAAGTAATTCGCCGATGCAG 57.268 40.909 0.00 0.00 37.32 4.41
2758 2984 6.517529 GCCTCAGAGAATTATCGACTAACCAT 60.518 42.308 0.00 0.00 0.00 3.55
2776 3002 2.111384 GTAGATGAACCCAGCCTCAGA 58.889 52.381 0.00 0.00 0.00 3.27
2777 3003 2.102252 GAGTAGATGAACCCAGCCTCAG 59.898 54.545 0.00 0.00 0.00 3.35
2778 3004 2.111384 GAGTAGATGAACCCAGCCTCA 58.889 52.381 0.00 0.00 0.00 3.86
2779 3005 1.414550 GGAGTAGATGAACCCAGCCTC 59.585 57.143 0.00 0.00 0.00 4.70
2780 3006 1.501582 GGAGTAGATGAACCCAGCCT 58.498 55.000 0.00 0.00 0.00 4.58
2781 3007 0.470341 GGGAGTAGATGAACCCAGCC 59.530 60.000 0.00 0.00 41.72 4.85
2783 3009 2.169352 CACAGGGAGTAGATGAACCCAG 59.831 54.545 0.00 0.00 44.25 4.45
2784 3010 2.187958 CACAGGGAGTAGATGAACCCA 58.812 52.381 0.00 0.00 44.25 4.51
2785 3011 2.467880 TCACAGGGAGTAGATGAACCC 58.532 52.381 0.00 0.00 42.36 4.11
2786 3012 3.260884 TGTTCACAGGGAGTAGATGAACC 59.739 47.826 11.66 0.00 45.50 3.62
2787 3013 4.499183 CTGTTCACAGGGAGTAGATGAAC 58.501 47.826 8.17 8.17 46.02 3.18
2788 3014 4.808414 CTGTTCACAGGGAGTAGATGAA 57.192 45.455 0.00 0.00 40.20 2.57
2849 3078 3.253921 CACTCAATCATCTTGCACCACAA 59.746 43.478 0.00 0.00 36.62 3.33
2851 3080 2.415090 GCACTCAATCATCTTGCACCAC 60.415 50.000 0.00 0.00 33.24 4.16
2854 3083 1.466167 ACGCACTCAATCATCTTGCAC 59.534 47.619 0.00 0.00 32.51 4.57
2857 3086 4.025396 GGTATCACGCACTCAATCATCTTG 60.025 45.833 0.00 0.00 0.00 3.02
2858 3087 4.122776 GGTATCACGCACTCAATCATCTT 58.877 43.478 0.00 0.00 0.00 2.40
2860 3089 2.802816 GGGTATCACGCACTCAATCATC 59.197 50.000 0.00 0.00 0.00 2.92
2861 3090 2.803133 CGGGTATCACGCACTCAATCAT 60.803 50.000 0.00 0.00 0.00 2.45
2862 3091 1.470805 CGGGTATCACGCACTCAATCA 60.471 52.381 0.00 0.00 0.00 2.57
2863 3092 1.209128 CGGGTATCACGCACTCAATC 58.791 55.000 0.00 0.00 0.00 2.67
2864 3093 0.535335 ACGGGTATCACGCACTCAAT 59.465 50.000 0.00 0.00 34.00 2.57
2865 3094 0.389296 CACGGGTATCACGCACTCAA 60.389 55.000 0.00 0.00 34.00 3.02
2866 3095 1.214325 CACGGGTATCACGCACTCA 59.786 57.895 0.00 0.00 34.00 3.41
2867 3096 2.165301 GCACGGGTATCACGCACTC 61.165 63.158 0.00 0.00 34.00 3.51
2868 3097 2.125673 GCACGGGTATCACGCACT 60.126 61.111 0.00 0.00 34.00 4.40
2869 3098 3.192922 GGCACGGGTATCACGCAC 61.193 66.667 0.00 0.00 34.00 5.34
2925 3154 5.181690 TCGGAGGTCATTTTGTCTTTTTG 57.818 39.130 0.00 0.00 0.00 2.44
2934 3163 5.556915 TCTACATTGTTCGGAGGTCATTTT 58.443 37.500 0.00 0.00 0.00 1.82
2951 3180 7.120432 GCCTCTGAGAAAGTTTGAATTCTACAT 59.880 37.037 6.17 0.00 36.08 2.29
2954 3183 5.940470 GGCCTCTGAGAAAGTTTGAATTCTA 59.060 40.000 6.17 0.00 36.08 2.10
2958 3187 4.077822 CAGGCCTCTGAGAAAGTTTGAAT 58.922 43.478 0.00 0.00 43.49 2.57
2988 3218 5.486526 GAGATTTGAAGAGCTCTCAGGAAA 58.513 41.667 18.55 13.26 35.34 3.13
2989 3219 4.381398 CGAGATTTGAAGAGCTCTCAGGAA 60.381 45.833 18.55 10.17 35.02 3.36
3012 3242 6.311200 GTCTGTGCCAAATTTGATATGGTTTC 59.689 38.462 19.86 0.00 36.57 2.78
3017 3247 6.474427 GTGATGTCTGTGCCAAATTTGATATG 59.526 38.462 19.86 3.85 0.00 1.78
3021 3251 3.304592 CGTGATGTCTGTGCCAAATTTGA 60.305 43.478 19.86 0.00 0.00 2.69
3105 3340 4.081406 CCCAGGAGTGAACATGAAATTCA 58.919 43.478 0.00 0.00 33.68 2.57
3135 3370 2.600470 GTTTTGGCTCCCCGGCTT 60.600 61.111 0.00 0.00 39.32 4.35
3140 3375 4.056125 GCAGCGTTTTGGCTCCCC 62.056 66.667 0.00 0.00 42.53 4.81
3232 3467 5.198207 TGACGGTGAATCTAGGTTCATCTA 58.802 41.667 23.36 9.64 39.99 1.98
3248 3483 9.869844 GATATATTTTTGAGAAATCTGACGGTG 57.130 33.333 0.00 0.00 0.00 4.94
3293 3528 7.611467 AGACAAATAAACAGTCTCCAATATGCA 59.389 33.333 0.00 0.00 0.00 3.96
3356 3593 8.262601 AGGGTGTAGAAAATTTCAGGAAAAAT 57.737 30.769 8.55 0.00 33.56 1.82
3373 3612 7.497595 TCAATACTAGCACATTTAGGGTGTAG 58.502 38.462 0.00 0.00 38.51 2.74
3408 3647 2.134789 ATTCCATGCACCCAAGAGTC 57.865 50.000 0.00 0.00 0.00 3.36
3428 3667 5.508994 GGTGGATGACGGAAAAACAAAATCT 60.509 40.000 0.00 0.00 0.00 2.40
3435 3674 2.228103 GGAAGGTGGATGACGGAAAAAC 59.772 50.000 0.00 0.00 0.00 2.43
3438 3677 0.036765 CGGAAGGTGGATGACGGAAA 60.037 55.000 0.00 0.00 0.00 3.13
3439 3678 1.594833 CGGAAGGTGGATGACGGAA 59.405 57.895 0.00 0.00 0.00 4.30
3440 3679 3.014085 GCGGAAGGTGGATGACGGA 62.014 63.158 0.00 0.00 0.00 4.69
3443 3682 3.963428 ATATAGCGGAAGGTGGATGAC 57.037 47.619 0.00 0.00 44.53 3.06
3482 3722 3.407424 AGAAGAAAATGGCAAAAGGGC 57.593 42.857 0.00 0.00 43.73 5.19
3522 3762 5.850557 TTAAGTGTTTGGCATCCCATATG 57.149 39.130 0.00 0.00 41.78 1.78
3543 3783 8.635765 TCTATTTAGAGCCAACAAAACTGATT 57.364 30.769 0.00 0.00 0.00 2.57
3593 3833 5.942826 TCTGCATGATTGTATTGGTGTGTTA 59.057 36.000 0.00 0.00 0.00 2.41
3634 3874 3.620488 TCTTGGTTCACCATAGATTGCC 58.380 45.455 0.00 0.00 46.97 4.52
3641 3881 4.517285 GCATCTTCTCTTGGTTCACCATA 58.483 43.478 0.00 0.00 46.97 2.74
3669 3909 1.267574 ATGACGGTGAGGATGTGGCT 61.268 55.000 0.00 0.00 0.00 4.75
3721 3961 4.624125 GCTAGCTCAACCTGACCAAGTAAT 60.624 45.833 7.70 0.00 0.00 1.89
3811 4051 3.922426 CATGGGTGGAATAGGCCAA 57.078 52.632 5.01 0.00 40.20 4.52
3845 4085 0.243095 GACGTGCCCCGGTCTATATC 59.757 60.000 0.00 0.00 42.24 1.63
3847 4087 2.188829 CGACGTGCCCCGGTCTATA 61.189 63.158 0.00 0.00 42.24 1.31
4000 4240 8.593945 ACATCTATTGGCATCTCCTTTAAAAA 57.406 30.769 0.00 0.00 35.26 1.94
4001 4241 8.593945 AACATCTATTGGCATCTCCTTTAAAA 57.406 30.769 0.00 0.00 35.26 1.52
4002 4242 8.469200 CAAACATCTATTGGCATCTCCTTTAAA 58.531 33.333 0.00 0.00 35.26 1.52
4003 4243 7.615365 ACAAACATCTATTGGCATCTCCTTTAA 59.385 33.333 0.00 0.00 35.26 1.52
4004 4244 7.118723 ACAAACATCTATTGGCATCTCCTTTA 58.881 34.615 0.00 0.00 35.26 1.85
4005 4245 5.954150 ACAAACATCTATTGGCATCTCCTTT 59.046 36.000 0.00 0.00 35.26 3.11
4006 4246 5.513233 ACAAACATCTATTGGCATCTCCTT 58.487 37.500 0.00 0.00 35.26 3.36
4007 4247 5.121380 ACAAACATCTATTGGCATCTCCT 57.879 39.130 0.00 0.00 35.26 3.69
4008 4248 5.841957 AACAAACATCTATTGGCATCTCC 57.158 39.130 0.00 0.00 32.02 3.71
4052 4292 0.535335 GACAGATGGTAAGGACGGCA 59.465 55.000 0.00 0.00 0.00 5.69
4096 4336 8.934507 AGTCTAATAAACACAAGATAGACAGC 57.065 34.615 11.87 0.00 40.90 4.40
4157 4403 3.076621 GACATCATGCAGACTTTGTCCA 58.923 45.455 0.00 0.00 30.86 4.02
4159 4405 4.393990 TGATGACATCATGCAGACTTTGTC 59.606 41.667 14.24 1.92 36.57 3.18
4188 5169 5.129815 ACGTTGGAGATGCCCTTATTACTTA 59.870 40.000 0.00 0.00 34.97 2.24
4212 5195 2.073716 ACCGGTGTCCAAGGACCAA 61.074 57.895 6.12 0.00 43.97 3.67
4241 5248 0.037447 TGCGGTCAACATTGGATGGA 59.963 50.000 0.00 0.00 33.60 3.41
4310 5328 7.169813 TCTGCATGAATGTCGTCTGATTTATAC 59.830 37.037 0.00 0.00 0.00 1.47
4319 5337 2.289010 TGTGTCTGCATGAATGTCGTCT 60.289 45.455 0.00 0.00 0.00 4.18
4380 5405 4.646492 GTCGTAGGATAGGTTTAGGGTTGA 59.354 45.833 0.00 0.00 0.00 3.18
4382 5407 3.633986 CGTCGTAGGATAGGTTTAGGGTT 59.366 47.826 0.00 0.00 0.00 4.11
4440 5468 1.107538 CGGATGAAGGAGGCGGTCTA 61.108 60.000 0.00 0.00 0.00 2.59
4453 5481 1.025041 CTCATGGAGACGACGGATGA 58.975 55.000 0.00 0.00 0.00 2.92
4498 5528 3.826754 CGCCGGAGACTGCAGCTA 61.827 66.667 15.27 0.00 41.12 3.32
4596 5637 3.777925 CGAACAAGGCGCGGACTG 61.778 66.667 8.83 0.00 0.00 3.51
4656 5697 1.736586 GATGGGACGACGAGAGCAT 59.263 57.895 0.00 0.00 0.00 3.79
4723 5774 1.442769 CACAACTACAGGCGATTGCT 58.557 50.000 4.59 0.00 42.25 3.91
4881 5947 1.323271 CCTCCTAGAGCAGCACCGAA 61.323 60.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.