Multiple sequence alignment - TraesCS3A01G369000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G369000 chr3A 100.000 5680 0 0 1 5680 619645448 619651127 0.000000e+00 10490.0
1 TraesCS3A01G369000 chr3D 93.632 3329 136 21 551 3811 476195247 476198567 0.000000e+00 4903.0
2 TraesCS3A01G369000 chr3D 94.284 1557 52 17 3810 5355 476198620 476200150 0.000000e+00 2348.0
3 TraesCS3A01G369000 chr3D 89.251 521 48 7 1954 2472 445757418 445756904 0.000000e+00 645.0
4 TraesCS3A01G369000 chr3D 95.548 292 12 1 1 291 316465078 316464787 3.100000e-127 466.0
5 TraesCS3A01G369000 chr3D 94.355 124 7 0 292 415 476195117 476195240 2.090000e-44 191.0
6 TraesCS3A01G369000 chr3D 83.486 109 6 4 5575 5680 476200622 476200721 2.180000e-14 91.6
7 TraesCS3A01G369000 chr3B 94.706 1700 70 11 1244 2929 634237718 634236025 0.000000e+00 2623.0
8 TraesCS3A01G369000 chr3B 94.459 1498 64 8 3866 5355 634235021 634233535 0.000000e+00 2289.0
9 TraesCS3A01G369000 chr3B 92.888 703 42 4 3113 3811 634235909 634235211 0.000000e+00 1014.0
10 TraesCS3A01G369000 chr3B 93.679 617 26 10 532 1141 634238772 634238162 0.000000e+00 911.0
11 TraesCS3A01G369000 chr3B 95.563 293 10 3 1 291 43611775 43612066 3.100000e-127 466.0
12 TraesCS3A01G369000 chr3B 94.531 128 6 1 292 419 634238893 634238767 4.490000e-46 196.0
13 TraesCS3A01G369000 chr3B 93.478 92 6 0 3017 3108 634236034 634235943 2.760000e-28 137.0
14 TraesCS3A01G369000 chr3B 81.651 109 8 5 5575 5680 634233065 634232966 4.720000e-11 80.5
15 TraesCS3A01G369000 chr5B 89.655 522 47 6 1953 2472 599604478 599603962 0.000000e+00 658.0
16 TraesCS3A01G369000 chr5B 98.347 121 2 0 416 536 70795654 70795774 4.460000e-51 213.0
17 TraesCS3A01G369000 chr5B 96.800 125 4 0 410 534 79817869 79817993 5.770000e-50 209.0
18 TraesCS3A01G369000 chr5B 95.349 129 6 0 409 537 454655470 454655342 7.460000e-49 206.0
19 TraesCS3A01G369000 chr1D 89.464 522 47 7 1953 2472 475274688 475274173 0.000000e+00 652.0
20 TraesCS3A01G369000 chr1D 92.188 192 15 0 2780 2971 475273321 475273130 7.250000e-69 272.0
21 TraesCS3A01G369000 chr5A 88.123 522 55 6 1953 2472 55378564 55378048 1.050000e-171 614.0
22 TraesCS3A01G369000 chr5A 95.848 289 11 1 4 291 450425269 450424981 3.100000e-127 466.0
23 TraesCS3A01G369000 chrUn 87.308 520 60 5 1953 2472 36554262 36554775 1.760000e-164 590.0
24 TraesCS3A01G369000 chrUn 95.548 292 12 1 1 291 31026301 31026010 3.100000e-127 466.0
25 TraesCS3A01G369000 chr2B 96.575 292 9 1 1 291 606028046 606027755 3.080000e-132 483.0
26 TraesCS3A01G369000 chr1B 95.578 294 10 3 1 292 309196944 309196652 8.620000e-128 468.0
27 TraesCS3A01G369000 chr6B 95.238 294 13 1 3 295 86574777 86574484 1.110000e-126 464.0
28 TraesCS3A01G369000 chr6B 97.619 126 3 0 410 535 32822529 32822654 3.450000e-52 217.0
29 TraesCS3A01G369000 chr6B 96.800 125 4 0 416 540 130306163 130306039 5.770000e-50 209.0
30 TraesCS3A01G369000 chr6A 95.205 292 13 1 2 292 198394704 198394413 1.440000e-125 460.0
31 TraesCS3A01G369000 chr6A 95.205 292 13 1 2 292 198500100 198499809 1.440000e-125 460.0
32 TraesCS3A01G369000 chr2D 90.104 192 18 1 2777 2968 277707077 277707267 1.220000e-61 248.0
33 TraesCS3A01G369000 chr5D 98.361 122 2 0 416 537 420228284 420228163 1.240000e-51 215.0
34 TraesCS3A01G369000 chr5D 95.455 132 5 1 410 540 566048281 566048412 5.770000e-50 209.0
35 TraesCS3A01G369000 chr4D 97.600 125 2 1 411 535 234179137 234179260 4.460000e-51 213.0
36 TraesCS3A01G369000 chr6D 97.541 122 3 0 416 537 430998463 430998584 5.770000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G369000 chr3A 619645448 619651127 5679 False 10490.000000 10490 100.000000 1 5680 1 chr3A.!!$F1 5679
1 TraesCS3A01G369000 chr3D 476195117 476200721 5604 False 1883.400000 4903 91.439250 292 5680 4 chr3D.!!$F1 5388
2 TraesCS3A01G369000 chr3D 445756904 445757418 514 True 645.000000 645 89.251000 1954 2472 1 chr3D.!!$R2 518
3 TraesCS3A01G369000 chr3B 634232966 634238893 5927 True 1035.785714 2623 92.198857 292 5680 7 chr3B.!!$R1 5388
4 TraesCS3A01G369000 chr5B 599603962 599604478 516 True 658.000000 658 89.655000 1953 2472 1 chr5B.!!$R2 519
5 TraesCS3A01G369000 chr1D 475273130 475274688 1558 True 462.000000 652 90.826000 1953 2971 2 chr1D.!!$R1 1018
6 TraesCS3A01G369000 chr5A 55378048 55378564 516 True 614.000000 614 88.123000 1953 2472 1 chr5A.!!$R1 519
7 TraesCS3A01G369000 chrUn 36554262 36554775 513 False 590.000000 590 87.308000 1953 2472 1 chrUn.!!$F1 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 168 0.030908 AGCCAGCTCGCGAGTTATAC 59.969 55.0 34.46 21.22 0.00 1.47 F
529 530 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
1216 1221 0.373716 CGGCAATGTAAGTTCTCCGC 59.626 55.0 0.00 0.00 0.00 5.54 F
1454 1800 0.310854 CTTGTTTGGTTCTGACGGCC 59.689 55.0 0.00 0.00 0.00 6.13 F
2082 2441 0.673333 TGCACCCTGCTTGTACGATG 60.673 55.0 0.00 0.00 45.31 3.84 F
3541 4512 0.685097 TGGTCTCTACACCAAGCCAC 59.315 55.0 0.00 0.00 43.88 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1201 1206 0.255033 GGGGGCGGAGAACTTACATT 59.745 55.000 0.0 0.0 0.00 2.71 R
1373 1719 0.478507 CTCTTGGGTTCCACTTGGGT 59.521 55.000 0.0 0.0 38.11 4.51 R
2185 2544 1.442769 AAAGGTCATGTAGCACAGCG 58.557 50.000 0.0 0.0 0.00 5.18 R
3396 4361 0.108585 TTCCACAGCACTCCTGGAAC 59.891 55.000 0.0 0.0 46.14 3.62 R
3595 4566 4.253685 ACTGAAATGTAGAATGTGACCCG 58.746 43.478 0.0 0.0 0.00 5.28 R
5169 6288 0.250901 TCTCACAGGGGAAAGCAAGC 60.251 55.000 0.0 0.0 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.361977 CCGTTGAAGGCCCAACCG 61.362 66.667 16.42 12.11 46.52 4.44
18 19 4.038080 CGTTGAAGGCCCAACCGC 62.038 66.667 16.42 0.00 46.52 5.68
25 26 4.176752 GGCCCAACCGCCTAGGAG 62.177 72.222 14.75 9.83 46.10 3.69
26 27 3.081409 GCCCAACCGCCTAGGAGA 61.081 66.667 14.75 0.00 45.00 3.71
27 28 2.901042 CCCAACCGCCTAGGAGAC 59.099 66.667 14.75 0.00 45.00 3.36
28 29 1.686110 CCCAACCGCCTAGGAGACT 60.686 63.158 14.75 0.00 45.00 3.24
29 30 1.677637 CCCAACCGCCTAGGAGACTC 61.678 65.000 14.75 0.00 45.00 3.36
30 31 0.970937 CCAACCGCCTAGGAGACTCA 60.971 60.000 14.75 0.00 45.00 3.41
31 32 1.115467 CAACCGCCTAGGAGACTCAT 58.885 55.000 14.75 0.00 45.00 2.90
32 33 1.115467 AACCGCCTAGGAGACTCATG 58.885 55.000 14.75 0.00 45.00 3.07
33 34 1.365633 CCGCCTAGGAGACTCATGC 59.634 63.158 14.75 0.00 45.00 4.06
34 35 1.007964 CGCCTAGGAGACTCATGCG 60.008 63.158 14.75 7.33 42.55 4.73
35 36 1.729470 CGCCTAGGAGACTCATGCGT 61.729 60.000 14.75 0.00 42.94 5.24
36 37 0.461961 GCCTAGGAGACTCATGCGTT 59.538 55.000 14.75 0.00 43.67 4.84
37 38 1.681793 GCCTAGGAGACTCATGCGTTA 59.318 52.381 14.75 0.00 43.67 3.18
38 39 2.544069 GCCTAGGAGACTCATGCGTTAC 60.544 54.545 14.75 0.00 43.67 2.50
39 40 2.688446 CCTAGGAGACTCATGCGTTACA 59.312 50.000 1.05 0.00 43.67 2.41
40 41 3.130516 CCTAGGAGACTCATGCGTTACAA 59.869 47.826 1.05 0.00 43.67 2.41
41 42 3.678056 AGGAGACTCATGCGTTACAAA 57.322 42.857 4.53 0.00 32.90 2.83
42 43 4.002906 AGGAGACTCATGCGTTACAAAA 57.997 40.909 4.53 0.00 32.90 2.44
43 44 4.385825 AGGAGACTCATGCGTTACAAAAA 58.614 39.130 4.53 0.00 32.90 1.94
164 165 2.490217 GAGCCAGCTCGCGAGTTA 59.510 61.111 34.46 0.73 33.06 2.24
165 166 1.066587 GAGCCAGCTCGCGAGTTAT 59.933 57.895 34.46 19.21 33.06 1.89
166 167 0.311165 GAGCCAGCTCGCGAGTTATA 59.689 55.000 34.46 0.00 33.06 0.98
167 168 0.030908 AGCCAGCTCGCGAGTTATAC 59.969 55.000 34.46 21.22 0.00 1.47
168 169 1.269444 GCCAGCTCGCGAGTTATACG 61.269 60.000 34.46 18.00 0.00 3.06
169 170 0.306840 CCAGCTCGCGAGTTATACGA 59.693 55.000 34.46 0.00 0.00 3.43
174 175 2.893837 CTCGCGAGTTATACGAGTCAG 58.106 52.381 27.79 0.00 46.19 3.51
175 176 1.004185 TCGCGAGTTATACGAGTCAGC 60.004 52.381 3.71 0.00 32.94 4.26
176 177 1.756367 GCGAGTTATACGAGTCAGCC 58.244 55.000 0.00 0.00 0.00 4.85
177 178 1.065102 GCGAGTTATACGAGTCAGCCA 59.935 52.381 0.00 0.00 0.00 4.75
178 179 2.479049 GCGAGTTATACGAGTCAGCCAA 60.479 50.000 0.00 0.00 0.00 4.52
179 180 3.795826 GCGAGTTATACGAGTCAGCCAAT 60.796 47.826 0.00 0.00 0.00 3.16
180 181 3.975670 CGAGTTATACGAGTCAGCCAATC 59.024 47.826 0.00 0.00 0.00 2.67
181 182 4.261238 CGAGTTATACGAGTCAGCCAATCT 60.261 45.833 0.00 0.00 0.00 2.40
182 183 5.593010 GAGTTATACGAGTCAGCCAATCTT 58.407 41.667 0.00 0.00 0.00 2.40
183 184 5.352284 AGTTATACGAGTCAGCCAATCTTG 58.648 41.667 0.00 0.00 0.00 3.02
184 185 5.127194 AGTTATACGAGTCAGCCAATCTTGA 59.873 40.000 0.00 0.00 0.00 3.02
185 186 2.839486 ACGAGTCAGCCAATCTTGAA 57.161 45.000 0.00 0.00 0.00 2.69
186 187 3.340814 ACGAGTCAGCCAATCTTGAAT 57.659 42.857 0.00 0.00 0.00 2.57
187 188 3.679389 ACGAGTCAGCCAATCTTGAATT 58.321 40.909 0.00 0.00 0.00 2.17
188 189 4.074970 ACGAGTCAGCCAATCTTGAATTT 58.925 39.130 0.00 0.00 0.00 1.82
189 190 4.083110 ACGAGTCAGCCAATCTTGAATTTG 60.083 41.667 0.00 0.00 0.00 2.32
190 191 4.154737 CGAGTCAGCCAATCTTGAATTTGA 59.845 41.667 0.00 0.00 0.00 2.69
191 192 5.638783 GAGTCAGCCAATCTTGAATTTGAG 58.361 41.667 0.00 0.00 0.00 3.02
192 193 4.082354 AGTCAGCCAATCTTGAATTTGAGC 60.082 41.667 0.00 0.00 0.00 4.26
193 194 4.082354 GTCAGCCAATCTTGAATTTGAGCT 60.082 41.667 0.00 0.00 32.93 4.09
194 195 4.157289 TCAGCCAATCTTGAATTTGAGCTC 59.843 41.667 6.82 6.82 31.44 4.09
195 196 4.082408 CAGCCAATCTTGAATTTGAGCTCA 60.082 41.667 13.74 13.74 31.44 4.26
196 197 4.710375 AGCCAATCTTGAATTTGAGCTCAT 59.290 37.500 19.04 1.77 29.30 2.90
197 198 5.187186 AGCCAATCTTGAATTTGAGCTCATT 59.813 36.000 19.04 10.05 29.30 2.57
198 199 6.379133 AGCCAATCTTGAATTTGAGCTCATTA 59.621 34.615 19.04 9.45 29.30 1.90
199 200 7.069578 AGCCAATCTTGAATTTGAGCTCATTAT 59.930 33.333 19.04 11.47 29.30 1.28
200 201 8.355169 GCCAATCTTGAATTTGAGCTCATTATA 58.645 33.333 19.04 0.00 0.00 0.98
211 212 7.853377 TTGAGCTCATTATAATAACGAGTCG 57.147 36.000 19.04 11.85 0.00 4.18
212 213 7.198306 TGAGCTCATTATAATAACGAGTCGA 57.802 36.000 21.50 0.00 0.00 4.20
213 214 7.298854 TGAGCTCATTATAATAACGAGTCGAG 58.701 38.462 21.50 2.16 0.00 4.04
214 215 7.041303 TGAGCTCATTATAATAACGAGTCGAGT 60.041 37.037 21.50 9.13 0.00 4.18
215 216 7.299586 AGCTCATTATAATAACGAGTCGAGTC 58.700 38.462 21.50 10.37 0.00 3.36
216 217 6.246748 GCTCATTATAATAACGAGTCGAGTCG 59.753 42.308 34.64 34.64 45.76 4.18
217 218 7.412137 TCATTATAATAACGAGTCGAGTCGA 57.588 36.000 40.68 24.64 42.85 4.20
218 219 7.508134 TCATTATAATAACGAGTCGAGTCGAG 58.492 38.462 40.68 19.43 42.85 4.04
219 220 2.455295 AATAACGAGTCGAGTCGAGC 57.545 50.000 40.68 10.29 42.85 5.03
220 221 1.654317 ATAACGAGTCGAGTCGAGCT 58.346 50.000 40.68 27.41 42.85 4.09
221 222 2.284263 TAACGAGTCGAGTCGAGCTA 57.716 50.000 40.68 26.53 42.85 3.32
222 223 1.000884 AACGAGTCGAGTCGAGCTAG 58.999 55.000 40.68 17.40 42.85 3.42
223 224 1.274476 CGAGTCGAGTCGAGCTAGC 59.726 63.158 33.61 6.62 42.85 3.42
224 225 1.149361 CGAGTCGAGTCGAGCTAGCT 61.149 60.000 33.61 19.45 42.85 3.32
225 226 0.580104 GAGTCGAGTCGAGCTAGCTC 59.420 60.000 31.12 31.12 36.23 4.09
249 250 6.359964 GTTAACGAAACGAGTTCTAGTGAG 57.640 41.667 0.00 0.00 33.70 3.51
250 251 4.564940 AACGAAACGAGTTCTAGTGAGT 57.435 40.909 0.00 0.00 33.70 3.41
251 252 4.144534 ACGAAACGAGTTCTAGTGAGTC 57.855 45.455 0.00 0.00 33.70 3.36
252 253 3.154489 CGAAACGAGTTCTAGTGAGTCG 58.846 50.000 18.12 18.12 36.88 4.18
253 254 3.120752 CGAAACGAGTTCTAGTGAGTCGA 60.121 47.826 23.25 0.00 35.65 4.20
254 255 4.396519 GAAACGAGTTCTAGTGAGTCGAG 58.603 47.826 23.25 5.59 35.65 4.04
255 256 1.733360 ACGAGTTCTAGTGAGTCGAGC 59.267 52.381 23.25 0.00 35.65 5.03
256 257 1.062880 CGAGTTCTAGTGAGTCGAGCC 59.937 57.143 16.04 0.00 34.43 4.70
257 258 1.062880 GAGTTCTAGTGAGTCGAGCCG 59.937 57.143 0.00 0.00 0.00 5.52
258 259 1.085091 GTTCTAGTGAGTCGAGCCGA 58.915 55.000 0.00 0.00 0.00 5.54
259 260 1.062880 GTTCTAGTGAGTCGAGCCGAG 59.937 57.143 0.00 0.00 36.23 4.63
260 261 1.090625 TCTAGTGAGTCGAGCCGAGC 61.091 60.000 0.00 0.00 36.23 5.03
261 262 1.078356 TAGTGAGTCGAGCCGAGCT 60.078 57.895 0.00 0.00 43.88 4.09
262 263 0.177373 TAGTGAGTCGAGCCGAGCTA 59.823 55.000 0.00 0.00 39.88 3.32
263 264 1.092921 AGTGAGTCGAGCCGAGCTAG 61.093 60.000 0.00 0.00 39.88 3.42
264 265 2.330041 GAGTCGAGCCGAGCTAGC 59.670 66.667 6.62 6.62 39.88 3.42
265 266 2.124487 AGTCGAGCCGAGCTAGCT 60.124 61.111 19.45 19.45 45.23 3.32
274 275 2.330041 GAGCTAGCTCGACTCGGC 59.670 66.667 28.04 4.45 33.06 5.54
275 276 2.124487 AGCTAGCTCGACTCGGCT 60.124 61.111 12.68 15.68 41.92 5.52
276 277 2.113131 GAGCTAGCTCGACTCGGCTC 62.113 65.000 28.04 12.42 42.79 4.70
277 278 2.629210 CTAGCTCGACTCGGCTCG 59.371 66.667 15.06 7.92 39.65 5.03
278 279 1.883544 CTAGCTCGACTCGGCTCGA 60.884 63.158 15.06 5.43 40.37 4.04
279 280 1.429927 CTAGCTCGACTCGGCTCGAA 61.430 60.000 15.06 1.79 42.00 3.71
280 281 0.814410 TAGCTCGACTCGGCTCGAAT 60.814 55.000 15.06 2.45 42.00 3.34
281 282 1.226717 GCTCGACTCGGCTCGAATT 60.227 57.895 0.00 0.00 42.00 2.17
282 283 1.203600 GCTCGACTCGGCTCGAATTC 61.204 60.000 0.00 0.00 42.00 2.17
283 284 0.592754 CTCGACTCGGCTCGAATTCC 60.593 60.000 0.00 0.00 42.00 3.01
284 285 1.138883 CGACTCGGCTCGAATTCCA 59.861 57.895 0.00 0.00 34.74 3.53
285 286 0.867753 CGACTCGGCTCGAATTCCAG 60.868 60.000 0.00 0.00 34.74 3.86
286 287 1.148759 GACTCGGCTCGAATTCCAGC 61.149 60.000 15.86 15.86 34.74 4.85
307 308 6.071391 CCAGCCCTAGCAAAGAAGAAAAATTA 60.071 38.462 0.00 0.00 43.56 1.40
374 375 6.377245 TTTAAATTTTCTAGAGACCCGGGA 57.623 37.500 32.02 2.06 0.00 5.14
408 409 1.203313 GTTTGTGTCGCCAGTACGC 59.797 57.895 0.00 0.00 0.00 4.42
415 416 1.154169 TCGCCAGTACGCTGTTACG 60.154 57.895 0.00 0.00 41.02 3.18
417 418 0.179192 CGCCAGTACGCTGTTACGTA 60.179 55.000 0.00 0.00 46.19 3.57
423 424 2.113860 TACGCTGTTACGTACTCCCT 57.886 50.000 0.00 0.00 46.19 4.20
424 425 1.251251 ACGCTGTTACGTACTCCCTT 58.749 50.000 0.00 0.00 46.19 3.95
425 426 1.200948 ACGCTGTTACGTACTCCCTTC 59.799 52.381 0.00 0.00 46.19 3.46
426 427 1.792993 CGCTGTTACGTACTCCCTTCG 60.793 57.143 0.00 0.00 0.00 3.79
427 428 1.200948 GCTGTTACGTACTCCCTTCGT 59.799 52.381 0.00 0.00 40.78 3.85
428 429 2.730402 GCTGTTACGTACTCCCTTCGTC 60.730 54.545 0.00 0.00 38.69 4.20
429 430 1.812571 TGTTACGTACTCCCTTCGTCC 59.187 52.381 0.00 0.00 38.69 4.79
430 431 1.086696 TTACGTACTCCCTTCGTCCG 58.913 55.000 0.00 0.00 38.69 4.79
431 432 0.744414 TACGTACTCCCTTCGTCCGG 60.744 60.000 0.00 0.00 38.69 5.14
432 433 1.746615 CGTACTCCCTTCGTCCGGA 60.747 63.158 0.00 0.00 0.00 5.14
433 434 1.308069 CGTACTCCCTTCGTCCGGAA 61.308 60.000 5.23 0.00 0.00 4.30
434 435 0.890683 GTACTCCCTTCGTCCGGAAA 59.109 55.000 5.23 0.00 33.34 3.13
435 436 1.479730 GTACTCCCTTCGTCCGGAAAT 59.520 52.381 5.23 0.00 33.34 2.17
436 437 1.856629 ACTCCCTTCGTCCGGAAATA 58.143 50.000 5.23 0.00 33.34 1.40
437 438 1.479730 ACTCCCTTCGTCCGGAAATAC 59.520 52.381 5.23 0.00 33.34 1.89
438 439 1.755380 CTCCCTTCGTCCGGAAATACT 59.245 52.381 5.23 0.00 33.34 2.12
439 440 1.753073 TCCCTTCGTCCGGAAATACTC 59.247 52.381 5.23 0.00 33.34 2.59
440 441 1.535437 CCCTTCGTCCGGAAATACTCG 60.535 57.143 5.23 4.26 33.34 4.18
441 442 1.133790 CCTTCGTCCGGAAATACTCGT 59.866 52.381 5.23 0.00 33.34 4.18
442 443 2.448219 CTTCGTCCGGAAATACTCGTC 58.552 52.381 5.23 0.00 33.34 4.20
443 444 0.374758 TCGTCCGGAAATACTCGTCG 59.625 55.000 5.23 1.58 0.00 5.12
444 445 0.374758 CGTCCGGAAATACTCGTCGA 59.625 55.000 5.23 0.00 0.00 4.20
445 446 1.202065 CGTCCGGAAATACTCGTCGAA 60.202 52.381 5.23 0.00 0.00 3.71
446 447 2.448219 GTCCGGAAATACTCGTCGAAG 58.552 52.381 5.23 0.00 0.00 3.79
447 448 1.402968 TCCGGAAATACTCGTCGAAGG 59.597 52.381 0.00 0.00 0.00 3.46
448 449 1.402968 CCGGAAATACTCGTCGAAGGA 59.597 52.381 0.00 0.00 0.00 3.36
449 450 2.159338 CCGGAAATACTCGTCGAAGGAA 60.159 50.000 0.00 0.00 0.00 3.36
450 451 3.490419 CCGGAAATACTCGTCGAAGGAAT 60.490 47.826 0.00 0.00 0.00 3.01
451 452 3.486108 CGGAAATACTCGTCGAAGGAATG 59.514 47.826 0.00 0.00 0.00 2.67
452 453 3.802685 GGAAATACTCGTCGAAGGAATGG 59.197 47.826 0.00 0.00 0.00 3.16
453 454 4.441079 GGAAATACTCGTCGAAGGAATGGA 60.441 45.833 0.00 0.00 0.00 3.41
454 455 4.939052 AATACTCGTCGAAGGAATGGAT 57.061 40.909 0.00 0.00 0.00 3.41
455 456 2.586258 ACTCGTCGAAGGAATGGATG 57.414 50.000 0.00 0.00 0.00 3.51
456 457 1.825474 ACTCGTCGAAGGAATGGATGT 59.175 47.619 0.00 0.00 0.00 3.06
457 458 3.021695 ACTCGTCGAAGGAATGGATGTA 58.978 45.455 0.00 0.00 0.00 2.29
458 459 3.637229 ACTCGTCGAAGGAATGGATGTAT 59.363 43.478 0.00 0.00 0.00 2.29
459 460 4.230657 CTCGTCGAAGGAATGGATGTATC 58.769 47.826 0.00 0.00 0.00 2.24
460 461 3.889538 TCGTCGAAGGAATGGATGTATCT 59.110 43.478 0.00 0.00 0.00 1.98
461 462 5.067954 TCGTCGAAGGAATGGATGTATCTA 58.932 41.667 0.00 0.00 0.00 1.98
462 463 5.181433 TCGTCGAAGGAATGGATGTATCTAG 59.819 44.000 0.00 0.00 0.00 2.43
463 464 5.181433 CGTCGAAGGAATGGATGTATCTAGA 59.819 44.000 0.00 0.00 0.00 2.43
464 465 6.127869 CGTCGAAGGAATGGATGTATCTAGAT 60.128 42.308 10.73 10.73 0.00 1.98
465 466 7.032580 GTCGAAGGAATGGATGTATCTAGATG 58.967 42.308 15.79 0.00 0.00 2.90
466 467 6.721668 TCGAAGGAATGGATGTATCTAGATGT 59.278 38.462 15.79 1.25 0.00 3.06
467 468 7.888546 TCGAAGGAATGGATGTATCTAGATGTA 59.111 37.037 15.79 4.44 0.00 2.29
468 469 8.690884 CGAAGGAATGGATGTATCTAGATGTAT 58.309 37.037 15.79 9.11 0.00 2.29
507 508 8.984891 ACATTCATTTTTATGCATTTCTTCGA 57.015 26.923 3.54 0.00 0.00 3.71
508 509 8.863049 ACATTCATTTTTATGCATTTCTTCGAC 58.137 29.630 3.54 0.00 0.00 4.20
509 510 8.862074 CATTCATTTTTATGCATTTCTTCGACA 58.138 29.630 3.54 0.00 0.00 4.35
510 511 8.809159 TTCATTTTTATGCATTTCTTCGACAA 57.191 26.923 3.54 0.00 0.00 3.18
511 512 8.451687 TCATTTTTATGCATTTCTTCGACAAG 57.548 30.769 3.54 0.00 0.00 3.16
512 513 8.081633 TCATTTTTATGCATTTCTTCGACAAGT 58.918 29.630 3.54 0.00 0.00 3.16
513 514 9.340695 CATTTTTATGCATTTCTTCGACAAGTA 57.659 29.630 3.54 0.00 0.00 2.24
515 516 9.906660 TTTTTATGCATTTCTTCGACAAGTATT 57.093 25.926 3.54 0.00 0.00 1.89
516 517 9.906660 TTTTATGCATTTCTTCGACAAGTATTT 57.093 25.926 3.54 0.00 0.00 1.40
517 518 9.554724 TTTATGCATTTCTTCGACAAGTATTTC 57.445 29.630 3.54 0.00 0.00 2.17
518 519 5.938322 TGCATTTCTTCGACAAGTATTTCC 58.062 37.500 0.00 0.00 0.00 3.13
519 520 5.022021 GCATTTCTTCGACAAGTATTTCCG 58.978 41.667 0.00 0.00 0.00 4.30
520 521 5.560148 CATTTCTTCGACAAGTATTTCCGG 58.440 41.667 0.00 0.00 0.00 5.14
521 522 4.524316 TTCTTCGACAAGTATTTCCGGA 57.476 40.909 0.00 0.00 0.00 5.14
522 523 3.841643 TCTTCGACAAGTATTTCCGGAC 58.158 45.455 1.83 0.00 0.00 4.79
523 524 2.267188 TCGACAAGTATTTCCGGACG 57.733 50.000 1.83 0.27 0.00 4.79
524 525 1.135315 TCGACAAGTATTTCCGGACGG 60.135 52.381 1.83 3.96 0.00 4.79
525 526 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
526 527 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
527 528 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
528 529 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
529 530 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
530 531 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
590 592 2.099062 CGCATCCAACGCTGCTTC 59.901 61.111 0.00 0.00 36.23 3.86
634 636 8.298729 AGTTTCTCAAAAGACCAAAAGAAGAT 57.701 30.769 0.00 0.00 0.00 2.40
690 693 1.240256 GACTCCACTCAGTCGACACT 58.760 55.000 19.50 0.00 33.74 3.55
756 761 1.480954 TGAAGAGTCATTACCTCGCCC 59.519 52.381 0.00 0.00 34.08 6.13
783 788 3.125658 TCGCCAAAATTAGAAACTACCGC 59.874 43.478 0.00 0.00 0.00 5.68
786 791 4.412207 CCAAAATTAGAAACTACCGCAGC 58.588 43.478 0.00 0.00 0.00 5.25
922 927 2.038975 TCCCTCCCCTCTCAACCG 59.961 66.667 0.00 0.00 0.00 4.44
976 981 1.002134 CTCCACCGCCAAATCCAGT 60.002 57.895 0.00 0.00 0.00 4.00
1165 1170 1.453015 CCCGATTCGCCCCATTTCA 60.453 57.895 0.00 0.00 0.00 2.69
1212 1217 1.165270 GCACCGGCAATGTAAGTTCT 58.835 50.000 0.00 0.00 40.72 3.01
1216 1221 0.373716 CGGCAATGTAAGTTCTCCGC 59.626 55.000 0.00 0.00 0.00 5.54
1454 1800 0.310854 CTTGTTTGGTTCTGACGGCC 59.689 55.000 0.00 0.00 0.00 6.13
1460 1807 1.698506 TGGTTCTGACGGCCAAAAAT 58.301 45.000 2.24 0.00 0.00 1.82
1578 1925 2.629210 CAAAGGCGCGTGTTCGAA 59.371 55.556 8.43 0.00 39.71 3.71
1714 2061 3.388024 GGCTGATGAGGTACATTACAGGA 59.612 47.826 0.00 0.00 39.56 3.86
1721 2068 5.428253 TGAGGTACATTACAGGATTTCAGC 58.572 41.667 0.00 0.00 0.00 4.26
1907 2255 4.989279 TGGGCTCAAATCTTCTTATTGC 57.011 40.909 0.00 0.00 0.00 3.56
1930 2289 4.382040 CCCCGATCATGCAGTACTAATAGG 60.382 50.000 0.00 0.00 0.00 2.57
1936 2295 7.604164 CGATCATGCAGTACTAATAGGGATTTT 59.396 37.037 0.00 0.00 0.00 1.82
1937 2296 8.627208 ATCATGCAGTACTAATAGGGATTTTG 57.373 34.615 0.00 0.00 0.00 2.44
2067 2426 4.509600 GGATGCTGTAAGAACTATCTGCAC 59.490 45.833 10.53 0.00 37.52 4.57
2082 2441 0.673333 TGCACCCTGCTTGTACGATG 60.673 55.000 0.00 0.00 45.31 3.84
2294 2655 9.052759 CACCTACATTGTACACTTTTAACTCTT 57.947 33.333 0.00 0.00 0.00 2.85
2353 2714 5.756347 TGTACTGTTTTGCTAACTGATCGTT 59.244 36.000 13.23 7.81 39.64 3.85
2360 2721 8.175069 TGTTTTGCTAACTGATCGTTGATTATC 58.825 33.333 11.54 0.00 37.05 1.75
2433 2794 9.487790 CCAAAGCTTGAATCCTTAAATTGTAAA 57.512 29.630 0.00 0.00 0.00 2.01
2490 2851 4.917385 TGGCTCCTTCAATTTACTTGCTA 58.083 39.130 0.00 0.00 34.66 3.49
2524 2885 6.048732 TGTTATGTCTGCTAACATGAAGGA 57.951 37.500 12.89 0.00 40.08 3.36
2829 3748 3.476552 TCAGGCAGTACTTTTTGTGAGG 58.523 45.455 0.00 0.00 0.00 3.86
2850 3769 8.674607 GTGAGGAAGTATACATTTTGTTTAGGG 58.325 37.037 5.50 0.00 0.00 3.53
2880 3799 5.664908 CCAGGATATGGCTTAGAGTATCCAT 59.335 44.000 15.29 7.01 43.83 3.41
3013 3949 9.684448 TGTGTGGTTATGTATAACATGTTTTTG 57.316 29.630 17.78 0.00 43.33 2.44
3074 4010 6.357367 AGTGTTGCTAAGGGATATGGTAAAG 58.643 40.000 0.00 0.00 0.00 1.85
3079 4015 7.865530 TGCTAAGGGATATGGTAAAGTGATA 57.134 36.000 0.00 0.00 0.00 2.15
3080 4016 7.676947 TGCTAAGGGATATGGTAAAGTGATAC 58.323 38.462 0.00 0.00 0.00 2.24
3132 4097 0.686224 GCTAGGGATGCTGATGCTCT 59.314 55.000 0.00 0.00 40.48 4.09
3256 4221 7.615365 TGCAGGTAATTTATTTCTTGTGGAGAT 59.385 33.333 0.00 0.00 33.49 2.75
3271 4236 8.807118 TCTTGTGGAGATCACTATCATATTACC 58.193 37.037 0.00 0.00 46.20 2.85
3297 4262 7.652524 TGCAATCTGCCACCTTTATTATTAA 57.347 32.000 0.00 0.00 44.23 1.40
3345 4310 7.912056 TCTATTGTTGAAAGAGTTCTGGATG 57.088 36.000 0.00 0.00 34.60 3.51
3346 4311 5.972107 ATTGTTGAAAGAGTTCTGGATGG 57.028 39.130 0.00 0.00 34.60 3.51
3364 4329 3.011566 TGGGGTTGGTGCTTATGTATG 57.988 47.619 0.00 0.00 0.00 2.39
3379 4344 9.348476 TGCTTATGTATGGCTTATTGAAATGTA 57.652 29.630 0.00 0.00 0.00 2.29
3499 4470 5.572896 GGTTTCTCATGTTTATTTTCGCCAG 59.427 40.000 0.00 0.00 0.00 4.85
3541 4512 0.685097 TGGTCTCTACACCAAGCCAC 59.315 55.000 0.00 0.00 43.88 5.01
3559 4530 3.574396 GCCACACCTCTGTAGCTCATATA 59.426 47.826 0.00 0.00 32.72 0.86
3560 4531 4.039245 GCCACACCTCTGTAGCTCATATAA 59.961 45.833 0.00 0.00 32.72 0.98
3595 4566 7.315142 TGATTTTTGCCATTAGTTCATCTGTC 58.685 34.615 0.00 0.00 0.00 3.51
3673 4644 1.270550 GTGACCAATTGGACTGCTTGG 59.729 52.381 31.22 2.56 44.06 3.61
3681 4652 2.775911 TGGACTGCTTGGATCTTGAG 57.224 50.000 0.00 0.00 0.00 3.02
3768 4739 6.703607 CCACTACTAGGCTTGAATGTATCTTG 59.296 42.308 2.20 0.00 0.00 3.02
3769 4740 6.703607 CACTACTAGGCTTGAATGTATCTTGG 59.296 42.308 2.20 0.00 0.00 3.61
3813 4838 7.573968 AAATCCTCAGTGCACTAAATTATCC 57.426 36.000 21.20 0.00 0.00 2.59
3832 4857 7.815840 TTATCCGATTTAATCATTCTTGCCA 57.184 32.000 5.76 0.00 0.00 4.92
3833 4858 6.713762 ATCCGATTTAATCATTCTTGCCAA 57.286 33.333 5.76 0.00 0.00 4.52
3864 4972 9.847224 AACAACTTTCCTTTTAGAAGATAGTGA 57.153 29.630 0.00 0.00 34.71 3.41
4023 5131 4.445162 CCCAACACCAACAGGTAAAGACTA 60.445 45.833 0.00 0.00 33.30 2.59
4138 5246 3.658757 GCACTGGCAAATACCTTTCAA 57.341 42.857 0.00 0.00 40.72 2.69
4236 5344 9.209175 GGTCTTCACATCCTGTATAATTATGAC 57.791 37.037 8.28 2.42 0.00 3.06
4254 5362 3.857052 TGACGTTCTAAGTTGCCTATGG 58.143 45.455 0.00 0.00 0.00 2.74
4310 5418 6.238648 AGAAATTTGTAGATCGACCCAAGTT 58.761 36.000 3.33 2.52 0.00 2.66
4599 5713 4.588899 ACACCAATATGTCAGCTGCTTTA 58.411 39.130 9.47 0.09 0.00 1.85
4723 5838 7.914537 AGATTTTCTTTAAGAAGTGCAAACG 57.085 32.000 7.49 0.00 35.37 3.60
4740 5855 4.024809 GCAAACGAGTCAAACTAAGAAGCT 60.025 41.667 0.00 0.00 0.00 3.74
4786 5901 5.116084 ACTTTGCTATTCCTCCTGCATTA 57.884 39.130 0.00 0.00 35.27 1.90
4863 5979 6.899393 TTATTTTGTTGAATCAGGTGCTCT 57.101 33.333 0.00 0.00 0.00 4.09
4873 5989 3.708403 TCAGGTGCTCTCATTCATTGT 57.292 42.857 0.00 0.00 0.00 2.71
4874 5990 4.824479 TCAGGTGCTCTCATTCATTGTA 57.176 40.909 0.00 0.00 0.00 2.41
4875 5991 5.363562 TCAGGTGCTCTCATTCATTGTAT 57.636 39.130 0.00 0.00 0.00 2.29
4876 5992 5.363101 TCAGGTGCTCTCATTCATTGTATC 58.637 41.667 0.00 0.00 0.00 2.24
4877 5993 5.104817 TCAGGTGCTCTCATTCATTGTATCA 60.105 40.000 0.00 0.00 0.00 2.15
4961 6077 4.491676 TCTTACTGCCGAAAGTGTACATC 58.508 43.478 0.00 0.00 0.00 3.06
5113 6231 1.630369 AGTAATGCAGAGCTGGGACAA 59.370 47.619 0.00 0.00 38.70 3.18
5156 6275 8.607459 CCAGAGAAATTGTACATCAGTGATAAC 58.393 37.037 5.03 7.96 0.00 1.89
5169 6288 6.037786 TCAGTGATAACTTTACTCAGGTGG 57.962 41.667 0.00 0.00 0.00 4.61
5170 6289 4.631813 CAGTGATAACTTTACTCAGGTGGC 59.368 45.833 0.00 0.00 0.00 5.01
5171 6290 4.532521 AGTGATAACTTTACTCAGGTGGCT 59.467 41.667 0.00 0.00 0.00 4.75
5172 6291 5.013183 AGTGATAACTTTACTCAGGTGGCTT 59.987 40.000 0.00 0.00 0.00 4.35
5279 6398 3.959535 TGGACTCCAAATCCAATTTGC 57.040 42.857 6.85 0.00 46.27 3.68
5289 6408 7.678837 TCCAAATCCAATTTGCAGATTACTTT 58.321 30.769 1.59 0.92 46.27 2.66
5297 6416 7.009815 CCAATTTGCAGATTACTTTGTGCATAG 59.990 37.037 1.59 0.00 44.99 2.23
5302 6421 6.259387 TGCAGATTACTTTGTGCATAGATGAG 59.741 38.462 0.00 0.00 40.93 2.90
5309 6428 4.952262 TTGTGCATAGATGAGCAACTTC 57.048 40.909 0.00 0.00 43.20 3.01
5321 6440 5.039920 TGAGCAACTTCATGGCATACTAT 57.960 39.130 0.00 0.00 0.00 2.12
5326 6445 3.602608 ACTTCATGGCATACTATCCCCT 58.397 45.455 0.00 0.00 0.00 4.79
5329 6448 2.912956 TCATGGCATACTATCCCCTTCC 59.087 50.000 0.00 0.00 0.00 3.46
5346 6465 5.306937 CCCCTTCCAACTAAATTTCTTTGGT 59.693 40.000 21.66 3.80 39.69 3.67
5365 6503 8.700051 TCTTTGGTCAAAACATGGAAATTTCTA 58.300 29.630 17.42 12.40 0.00 2.10
5377 6515 8.314021 ACATGGAAATTTCTAATCCAACTTTCC 58.686 33.333 17.42 7.13 45.75 3.13
5388 6526 8.656806 TCTAATCCAACTTTCCAGAGAAACTTA 58.343 33.333 0.00 0.00 37.07 2.24
5391 6529 5.473504 TCCAACTTTCCAGAGAAACTTATGC 59.526 40.000 0.00 0.00 37.07 3.14
5392 6530 5.241506 CCAACTTTCCAGAGAAACTTATGCA 59.758 40.000 0.00 0.00 37.07 3.96
5393 6531 6.239008 CCAACTTTCCAGAGAAACTTATGCAA 60.239 38.462 0.00 0.00 37.07 4.08
5419 6557 5.064441 AGAAGCATTAACTGAAACCATGC 57.936 39.130 0.00 0.00 40.53 4.06
5422 6560 5.064441 AGCATTAACTGAAACCATGCTTC 57.936 39.130 0.00 0.00 46.71 3.86
5452 6672 7.936847 ACATAGAATTAGTTGTGAAGACACCAA 59.063 33.333 0.00 0.00 45.40 3.67
5453 6673 8.950210 CATAGAATTAGTTGTGAAGACACCAAT 58.050 33.333 0.00 0.00 45.40 3.16
5454 6674 7.206981 AGAATTAGTTGTGAAGACACCAATG 57.793 36.000 0.00 0.00 45.40 2.82
5456 6676 1.603802 AGTTGTGAAGACACCAATGCG 59.396 47.619 0.00 0.00 45.40 4.73
5468 6688 3.316588 ACACCAATGCGTGTGTTAATGAA 59.683 39.130 6.69 0.00 45.19 2.57
5470 6690 4.558470 CACCAATGCGTGTGTTAATGAATC 59.442 41.667 0.00 0.00 0.00 2.52
5473 6693 4.882671 ATGCGTGTGTTAATGAATCTCC 57.117 40.909 0.00 0.00 0.00 3.71
5474 6694 3.669536 TGCGTGTGTTAATGAATCTCCA 58.330 40.909 0.00 0.00 0.00 3.86
5493 6713 3.012518 CCAGTTGCAAAGTATCTCCCTG 58.987 50.000 0.00 0.44 0.00 4.45
5499 6732 3.282021 GCAAAGTATCTCCCTGCAATGA 58.718 45.455 0.00 0.00 33.19 2.57
5508 6741 4.464008 TCTCCCTGCAATGAACATTATCC 58.536 43.478 0.00 0.00 0.00 2.59
5525 6758 9.889128 AACATTATCCAAAACATTCCTTAATGG 57.111 29.630 3.41 0.00 45.72 3.16
5587 6963 9.685276 TCACACATAATCACTTAATCCTTGAAT 57.315 29.630 0.00 0.00 0.00 2.57
5588 6964 9.726232 CACACATAATCACTTAATCCTTGAATG 57.274 33.333 0.00 0.00 0.00 2.67
5589 6965 8.408601 ACACATAATCACTTAATCCTTGAATGC 58.591 33.333 0.00 0.00 0.00 3.56
5590 6966 8.407832 CACATAATCACTTAATCCTTGAATGCA 58.592 33.333 0.00 0.00 0.00 3.96
5591 6967 9.139734 ACATAATCACTTAATCCTTGAATGCAT 57.860 29.630 0.00 0.00 0.00 3.96
5592 6968 9.622004 CATAATCACTTAATCCTTGAATGCATC 57.378 33.333 0.00 0.00 0.00 3.91
5593 6969 7.649533 AATCACTTAATCCTTGAATGCATCA 57.350 32.000 0.00 0.00 35.85 3.07
5675 7054 5.988561 GTCTCAAGCTTCCATATCCAACTAG 59.011 44.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.361977 CGGTTGGGCCTTCAACGG 61.362 66.667 15.90 15.34 45.66 4.44
1 2 4.038080 GCGGTTGGGCCTTCAACG 62.038 66.667 15.90 9.93 45.66 4.10
9 10 3.081409 TCTCCTAGGCGGTTGGGC 61.081 66.667 2.96 0.00 42.69 5.36
10 11 1.677637 GAGTCTCCTAGGCGGTTGGG 61.678 65.000 2.96 0.00 0.00 4.12
11 12 0.970937 TGAGTCTCCTAGGCGGTTGG 60.971 60.000 2.96 0.00 0.00 3.77
12 13 1.115467 ATGAGTCTCCTAGGCGGTTG 58.885 55.000 2.96 0.00 0.00 3.77
13 14 1.115467 CATGAGTCTCCTAGGCGGTT 58.885 55.000 2.96 0.00 0.00 4.44
14 15 1.395826 GCATGAGTCTCCTAGGCGGT 61.396 60.000 2.96 0.00 0.00 5.68
15 16 1.365633 GCATGAGTCTCCTAGGCGG 59.634 63.158 2.96 0.00 0.00 6.13
16 17 1.007964 CGCATGAGTCTCCTAGGCG 60.008 63.158 2.96 5.06 36.93 5.52
17 18 0.461961 AACGCATGAGTCTCCTAGGC 59.538 55.000 2.96 0.00 0.00 3.93
18 19 2.688446 TGTAACGCATGAGTCTCCTAGG 59.312 50.000 0.82 0.82 0.00 3.02
19 20 4.371855 TTGTAACGCATGAGTCTCCTAG 57.628 45.455 1.45 0.00 0.00 3.02
20 21 4.794278 TTTGTAACGCATGAGTCTCCTA 57.206 40.909 1.45 0.00 0.00 2.94
21 22 3.678056 TTTGTAACGCATGAGTCTCCT 57.322 42.857 1.45 0.00 0.00 3.69
22 23 4.742438 TTTTTGTAACGCATGAGTCTCC 57.258 40.909 1.45 0.00 0.00 3.71
147 148 0.311165 TATAACTCGCGAGCTGGCTC 59.689 55.000 34.83 12.09 39.55 4.70
148 149 0.030908 GTATAACTCGCGAGCTGGCT 59.969 55.000 34.83 17.53 0.00 4.75
149 150 1.269444 CGTATAACTCGCGAGCTGGC 61.269 60.000 34.83 19.63 0.00 4.85
150 151 0.306840 TCGTATAACTCGCGAGCTGG 59.693 55.000 34.83 18.02 0.00 4.85
151 152 1.664629 CTCGTATAACTCGCGAGCTG 58.335 55.000 34.83 17.87 44.03 4.24
155 156 1.004185 GCTGACTCGTATAACTCGCGA 60.004 52.381 9.26 9.26 0.00 5.87
156 157 1.386961 GCTGACTCGTATAACTCGCG 58.613 55.000 0.00 0.00 0.00 5.87
157 158 1.065102 TGGCTGACTCGTATAACTCGC 59.935 52.381 0.00 0.00 0.00 5.03
158 159 3.416119 TTGGCTGACTCGTATAACTCG 57.584 47.619 0.00 0.00 0.00 4.18
159 160 5.189659 AGATTGGCTGACTCGTATAACTC 57.810 43.478 0.00 0.00 0.00 3.01
160 161 5.127194 TCAAGATTGGCTGACTCGTATAACT 59.873 40.000 0.00 0.00 0.00 2.24
161 162 5.348986 TCAAGATTGGCTGACTCGTATAAC 58.651 41.667 0.00 0.00 0.00 1.89
162 163 5.592104 TCAAGATTGGCTGACTCGTATAA 57.408 39.130 0.00 0.00 0.00 0.98
163 164 5.592104 TTCAAGATTGGCTGACTCGTATA 57.408 39.130 0.00 0.00 0.00 1.47
164 165 4.471904 TTCAAGATTGGCTGACTCGTAT 57.528 40.909 0.00 0.00 0.00 3.06
165 166 3.953712 TTCAAGATTGGCTGACTCGTA 57.046 42.857 0.00 0.00 0.00 3.43
166 167 2.839486 TTCAAGATTGGCTGACTCGT 57.161 45.000 0.00 0.00 0.00 4.18
167 168 4.154737 TCAAATTCAAGATTGGCTGACTCG 59.845 41.667 0.00 0.00 0.00 4.18
168 169 5.633830 TCAAATTCAAGATTGGCTGACTC 57.366 39.130 0.00 0.00 0.00 3.36
169 170 4.082354 GCTCAAATTCAAGATTGGCTGACT 60.082 41.667 0.00 0.00 0.00 3.41
170 171 4.082354 AGCTCAAATTCAAGATTGGCTGAC 60.082 41.667 0.00 0.00 34.22 3.51
171 172 4.084287 AGCTCAAATTCAAGATTGGCTGA 58.916 39.130 0.00 0.00 34.22 4.26
172 173 4.082408 TGAGCTCAAATTCAAGATTGGCTG 60.082 41.667 15.67 0.00 35.02 4.85
173 174 4.084287 TGAGCTCAAATTCAAGATTGGCT 58.916 39.130 15.67 0.00 36.46 4.75
174 175 4.445452 TGAGCTCAAATTCAAGATTGGC 57.555 40.909 15.67 0.00 0.00 4.52
185 186 8.916654 CGACTCGTTATTATAATGAGCTCAAAT 58.083 33.333 25.58 18.85 36.91 2.32
186 187 8.132995 TCGACTCGTTATTATAATGAGCTCAAA 58.867 33.333 25.58 12.67 36.91 2.69
187 188 7.645402 TCGACTCGTTATTATAATGAGCTCAA 58.355 34.615 25.58 5.35 36.91 3.02
188 189 7.041303 ACTCGACTCGTTATTATAATGAGCTCA 60.041 37.037 25.58 20.79 36.91 4.26
189 190 7.299586 ACTCGACTCGTTATTATAATGAGCTC 58.700 38.462 25.58 20.81 36.91 4.09
190 191 7.204496 ACTCGACTCGTTATTATAATGAGCT 57.796 36.000 25.58 16.52 36.91 4.09
191 192 6.246748 CGACTCGACTCGTTATTATAATGAGC 59.753 42.308 25.58 19.03 36.91 4.26
192 193 7.508134 TCGACTCGACTCGTTATTATAATGAG 58.492 38.462 24.58 24.58 38.80 2.90
193 194 7.412137 TCGACTCGACTCGTTATTATAATGA 57.588 36.000 13.05 6.69 35.10 2.57
194 195 6.246748 GCTCGACTCGACTCGTTATTATAATG 59.753 42.308 13.05 0.00 35.10 1.90
195 196 6.147492 AGCTCGACTCGACTCGTTATTATAAT 59.853 38.462 13.05 2.97 35.10 1.28
196 197 5.464722 AGCTCGACTCGACTCGTTATTATAA 59.535 40.000 13.05 0.00 35.10 0.98
197 198 4.987285 AGCTCGACTCGACTCGTTATTATA 59.013 41.667 13.05 0.00 35.10 0.98
198 199 3.808726 AGCTCGACTCGACTCGTTATTAT 59.191 43.478 13.05 0.00 35.10 1.28
199 200 3.193263 AGCTCGACTCGACTCGTTATTA 58.807 45.455 13.05 0.00 35.10 0.98
200 201 2.008329 AGCTCGACTCGACTCGTTATT 58.992 47.619 13.05 0.00 35.10 1.40
201 202 1.654317 AGCTCGACTCGACTCGTTAT 58.346 50.000 13.05 0.00 35.10 1.89
202 203 2.191802 CTAGCTCGACTCGACTCGTTA 58.808 52.381 13.05 5.57 35.10 3.18
203 204 1.000884 CTAGCTCGACTCGACTCGTT 58.999 55.000 13.05 4.85 35.10 3.85
204 205 1.422950 GCTAGCTCGACTCGACTCGT 61.423 60.000 7.70 0.00 35.10 4.18
205 206 1.149361 AGCTAGCTCGACTCGACTCG 61.149 60.000 12.68 8.00 34.83 4.18
206 207 0.580104 GAGCTAGCTCGACTCGACTC 59.420 60.000 28.04 3.20 33.06 3.36
207 208 2.685364 GAGCTAGCTCGACTCGACT 58.315 57.895 28.04 0.00 33.06 4.18
226 227 5.911838 ACTCACTAGAACTCGTTTCGTTAAC 59.088 40.000 0.00 0.00 39.47 2.01
227 228 6.064846 ACTCACTAGAACTCGTTTCGTTAA 57.935 37.500 0.00 0.00 39.47 2.01
228 229 5.613360 CGACTCACTAGAACTCGTTTCGTTA 60.613 44.000 0.00 0.00 39.47 3.18
229 230 4.535116 GACTCACTAGAACTCGTTTCGTT 58.465 43.478 0.00 0.00 39.47 3.85
230 231 3.363772 CGACTCACTAGAACTCGTTTCGT 60.364 47.826 0.00 0.00 39.47 3.85
231 232 3.120752 TCGACTCACTAGAACTCGTTTCG 60.121 47.826 0.00 0.00 39.47 3.46
232 233 4.396519 CTCGACTCACTAGAACTCGTTTC 58.603 47.826 0.00 0.00 33.95 2.78
233 234 3.365164 GCTCGACTCACTAGAACTCGTTT 60.365 47.826 0.00 0.00 0.00 3.60
234 235 2.160022 GCTCGACTCACTAGAACTCGTT 59.840 50.000 0.00 0.00 0.00 3.85
235 236 1.733360 GCTCGACTCACTAGAACTCGT 59.267 52.381 0.00 0.00 0.00 4.18
236 237 1.062880 GGCTCGACTCACTAGAACTCG 59.937 57.143 0.00 0.00 0.00 4.18
237 238 1.062880 CGGCTCGACTCACTAGAACTC 59.937 57.143 0.00 0.00 0.00 3.01
238 239 1.088306 CGGCTCGACTCACTAGAACT 58.912 55.000 0.00 0.00 0.00 3.01
239 240 1.062880 CTCGGCTCGACTCACTAGAAC 59.937 57.143 0.00 0.00 0.00 3.01
240 241 1.370609 CTCGGCTCGACTCACTAGAA 58.629 55.000 0.00 0.00 0.00 2.10
241 242 1.090625 GCTCGGCTCGACTCACTAGA 61.091 60.000 0.00 0.00 0.00 2.43
242 243 1.092921 AGCTCGGCTCGACTCACTAG 61.093 60.000 0.00 0.00 30.62 2.57
243 244 0.177373 TAGCTCGGCTCGACTCACTA 59.823 55.000 1.46 0.00 40.44 2.74
244 245 1.078356 TAGCTCGGCTCGACTCACT 60.078 57.895 1.46 0.00 40.44 3.41
245 246 1.353804 CTAGCTCGGCTCGACTCAC 59.646 63.158 1.46 0.00 40.44 3.51
246 247 2.473760 GCTAGCTCGGCTCGACTCA 61.474 63.158 7.70 0.00 40.44 3.41
247 248 2.113131 GAGCTAGCTCGGCTCGACTC 62.113 65.000 28.04 3.20 45.01 3.36
248 249 2.124487 AGCTAGCTCGGCTCGACT 60.124 61.111 12.68 0.00 40.44 4.18
249 250 2.330041 GAGCTAGCTCGGCTCGAC 59.670 66.667 28.04 4.45 45.01 4.20
257 258 2.113131 GAGCCGAGTCGAGCTAGCTC 62.113 65.000 31.12 31.12 42.61 4.09
258 259 2.124487 AGCCGAGTCGAGCTAGCT 60.124 61.111 19.45 19.45 37.64 3.32
259 260 2.330041 GAGCCGAGTCGAGCTAGC 59.670 66.667 22.81 6.62 40.11 3.42
260 261 1.883544 TCGAGCCGAGTCGAGCTAG 60.884 63.158 22.81 22.02 43.91 3.42
261 262 2.186125 TCGAGCCGAGTCGAGCTA 59.814 61.111 22.81 10.28 43.91 3.32
266 267 0.867753 CTGGAATTCGAGCCGAGTCG 60.868 60.000 5.29 5.29 41.51 4.18
267 268 1.148759 GCTGGAATTCGAGCCGAGTC 61.149 60.000 26.80 3.39 41.09 3.36
268 269 1.153549 GCTGGAATTCGAGCCGAGT 60.154 57.895 26.80 0.00 41.09 4.18
269 270 3.711348 GCTGGAATTCGAGCCGAG 58.289 61.111 26.80 0.63 41.09 4.63
273 274 0.882484 GCTAGGGCTGGAATTCGAGC 60.882 60.000 28.50 28.50 45.32 5.03
274 275 0.465705 TGCTAGGGCTGGAATTCGAG 59.534 55.000 12.73 12.73 39.59 4.04
275 276 0.908910 TTGCTAGGGCTGGAATTCGA 59.091 50.000 0.00 0.00 39.59 3.71
276 277 1.672881 CTTTGCTAGGGCTGGAATTCG 59.327 52.381 0.00 0.00 39.59 3.34
277 278 3.004752 TCTTTGCTAGGGCTGGAATTC 57.995 47.619 0.00 0.00 39.59 2.17
278 279 3.010584 TCTTCTTTGCTAGGGCTGGAATT 59.989 43.478 0.00 0.00 39.59 2.17
279 280 2.578021 TCTTCTTTGCTAGGGCTGGAAT 59.422 45.455 0.00 0.00 39.59 3.01
280 281 1.985159 TCTTCTTTGCTAGGGCTGGAA 59.015 47.619 0.00 0.00 39.59 3.53
281 282 1.656587 TCTTCTTTGCTAGGGCTGGA 58.343 50.000 0.00 0.00 39.59 3.86
282 283 2.496899 TTCTTCTTTGCTAGGGCTGG 57.503 50.000 0.00 0.00 39.59 4.85
283 284 4.853924 TTTTTCTTCTTTGCTAGGGCTG 57.146 40.909 0.00 0.00 39.59 4.85
284 285 7.724490 ATAATTTTTCTTCTTTGCTAGGGCT 57.276 32.000 0.00 0.00 39.59 5.19
374 375 2.831526 ACAAACCTGGAAGTTTTGTGCT 59.168 40.909 11.11 0.00 37.87 4.40
408 409 2.159462 GGACGAAGGGAGTACGTAACAG 60.159 54.545 0.00 0.00 40.29 3.16
415 416 0.890683 TTTCCGGACGAAGGGAGTAC 59.109 55.000 1.83 0.00 33.01 2.73
416 417 1.856629 ATTTCCGGACGAAGGGAGTA 58.143 50.000 1.83 0.00 33.01 2.59
417 418 1.479730 GTATTTCCGGACGAAGGGAGT 59.520 52.381 1.83 0.00 33.01 3.85
418 419 1.755380 AGTATTTCCGGACGAAGGGAG 59.245 52.381 1.83 0.00 33.01 4.30
420 421 1.535437 CGAGTATTTCCGGACGAAGGG 60.535 57.143 1.83 0.00 0.00 3.95
421 422 1.133790 ACGAGTATTTCCGGACGAAGG 59.866 52.381 15.79 0.32 0.00 3.46
422 423 2.448219 GACGAGTATTTCCGGACGAAG 58.552 52.381 15.79 1.95 0.00 3.79
423 424 1.202065 CGACGAGTATTTCCGGACGAA 60.202 52.381 15.79 3.90 34.06 3.85
424 425 0.374758 CGACGAGTATTTCCGGACGA 59.625 55.000 15.79 3.01 34.06 4.20
425 426 0.374758 TCGACGAGTATTTCCGGACG 59.625 55.000 1.83 5.89 0.00 4.79
426 427 2.448219 CTTCGACGAGTATTTCCGGAC 58.552 52.381 1.83 0.00 0.00 4.79
427 428 1.402968 CCTTCGACGAGTATTTCCGGA 59.597 52.381 0.00 0.00 0.00 5.14
428 429 1.402968 TCCTTCGACGAGTATTTCCGG 59.597 52.381 0.00 0.00 0.00 5.14
429 430 2.838386 TCCTTCGACGAGTATTTCCG 57.162 50.000 0.00 0.00 0.00 4.30
430 431 3.802685 CCATTCCTTCGACGAGTATTTCC 59.197 47.826 0.00 0.00 0.00 3.13
431 432 4.679662 TCCATTCCTTCGACGAGTATTTC 58.320 43.478 0.00 0.00 0.00 2.17
432 433 4.730949 TCCATTCCTTCGACGAGTATTT 57.269 40.909 0.00 0.00 0.00 1.40
433 434 4.099573 ACATCCATTCCTTCGACGAGTATT 59.900 41.667 0.00 0.00 0.00 1.89
434 435 3.637229 ACATCCATTCCTTCGACGAGTAT 59.363 43.478 0.00 0.00 0.00 2.12
435 436 3.021695 ACATCCATTCCTTCGACGAGTA 58.978 45.455 0.00 0.00 0.00 2.59
436 437 1.825474 ACATCCATTCCTTCGACGAGT 59.175 47.619 0.00 0.00 0.00 4.18
437 438 2.586258 ACATCCATTCCTTCGACGAG 57.414 50.000 0.00 0.00 0.00 4.18
438 439 3.889538 AGATACATCCATTCCTTCGACGA 59.110 43.478 0.00 0.00 0.00 4.20
439 440 4.244425 AGATACATCCATTCCTTCGACG 57.756 45.455 0.00 0.00 0.00 5.12
440 441 6.576662 TCTAGATACATCCATTCCTTCGAC 57.423 41.667 0.00 0.00 0.00 4.20
441 442 6.721668 ACATCTAGATACATCCATTCCTTCGA 59.278 38.462 4.54 0.00 0.00 3.71
442 443 6.929625 ACATCTAGATACATCCATTCCTTCG 58.070 40.000 4.54 0.00 0.00 3.79
482 483 8.863049 GTCGAAGAAATGCATAAAAATGAATGT 58.137 29.630 0.00 0.00 39.69 2.71
483 484 8.862074 TGTCGAAGAAATGCATAAAAATGAATG 58.138 29.630 0.00 0.00 39.69 2.67
484 485 8.984891 TGTCGAAGAAATGCATAAAAATGAAT 57.015 26.923 0.00 0.00 39.69 2.57
485 486 8.809159 TTGTCGAAGAAATGCATAAAAATGAA 57.191 26.923 0.00 0.00 39.69 2.57
486 487 8.081633 ACTTGTCGAAGAAATGCATAAAAATGA 58.918 29.630 0.00 0.00 39.69 2.57
487 488 8.231304 ACTTGTCGAAGAAATGCATAAAAATG 57.769 30.769 0.00 0.00 39.69 2.32
489 490 9.906660 AATACTTGTCGAAGAAATGCATAAAAA 57.093 25.926 0.00 0.00 39.69 1.94
490 491 9.906660 AAATACTTGTCGAAGAAATGCATAAAA 57.093 25.926 0.00 0.00 39.69 1.52
491 492 9.554724 GAAATACTTGTCGAAGAAATGCATAAA 57.445 29.630 0.00 0.00 39.69 1.40
492 493 8.181573 GGAAATACTTGTCGAAGAAATGCATAA 58.818 33.333 0.00 0.00 39.69 1.90
493 494 7.465379 CGGAAATACTTGTCGAAGAAATGCATA 60.465 37.037 0.00 0.00 39.69 3.14
494 495 6.555315 GGAAATACTTGTCGAAGAAATGCAT 58.445 36.000 0.00 0.00 39.69 3.96
495 496 5.390461 CGGAAATACTTGTCGAAGAAATGCA 60.390 40.000 0.00 0.00 39.69 3.96
496 497 5.022021 CGGAAATACTTGTCGAAGAAATGC 58.978 41.667 0.00 0.00 39.69 3.56
497 498 5.350365 TCCGGAAATACTTGTCGAAGAAATG 59.650 40.000 0.00 0.00 39.69 2.32
498 499 5.350640 GTCCGGAAATACTTGTCGAAGAAAT 59.649 40.000 5.23 0.00 39.69 2.17
499 500 4.687483 GTCCGGAAATACTTGTCGAAGAAA 59.313 41.667 5.23 0.00 39.69 2.52
500 501 4.240096 GTCCGGAAATACTTGTCGAAGAA 58.760 43.478 5.23 0.00 39.69 2.52
501 502 3.671433 CGTCCGGAAATACTTGTCGAAGA 60.671 47.826 5.23 0.00 32.98 2.87
502 503 2.597305 CGTCCGGAAATACTTGTCGAAG 59.403 50.000 5.23 0.00 35.07 3.79
503 504 2.598589 CGTCCGGAAATACTTGTCGAA 58.401 47.619 5.23 0.00 0.00 3.71
504 505 1.135315 CCGTCCGGAAATACTTGTCGA 60.135 52.381 5.23 0.00 37.50 4.20
505 506 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
506 507 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
507 508 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
508 509 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
509 510 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
510 511 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
511 512 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
512 513 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
513 514 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
514 515 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
515 516 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
516 517 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
517 518 0.817229 GTAGTACTCCCTCCGTCCGG 60.817 65.000 0.00 0.00 0.00 5.14
518 519 0.107508 TGTAGTACTCCCTCCGTCCG 60.108 60.000 0.00 0.00 0.00 4.79
519 520 2.361643 ATGTAGTACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
520 521 2.290093 CGAATGTAGTACTCCCTCCGTC 59.710 54.545 0.00 0.00 0.00 4.79
521 522 2.295885 CGAATGTAGTACTCCCTCCGT 58.704 52.381 0.00 0.00 0.00 4.69
522 523 1.607628 CCGAATGTAGTACTCCCTCCG 59.392 57.143 0.00 0.00 0.00 4.63
523 524 2.941480 TCCGAATGTAGTACTCCCTCC 58.059 52.381 0.00 0.00 0.00 4.30
524 525 4.996788 TTTCCGAATGTAGTACTCCCTC 57.003 45.455 0.00 0.00 0.00 4.30
525 526 5.424252 TCATTTTCCGAATGTAGTACTCCCT 59.576 40.000 0.00 0.00 0.00 4.20
526 527 5.522824 GTCATTTTCCGAATGTAGTACTCCC 59.477 44.000 0.00 0.00 0.00 4.30
527 528 5.231568 CGTCATTTTCCGAATGTAGTACTCC 59.768 44.000 0.00 0.00 0.00 3.85
528 529 5.231568 CCGTCATTTTCCGAATGTAGTACTC 59.768 44.000 0.00 0.00 0.00 2.59
529 530 5.107133 CCGTCATTTTCCGAATGTAGTACT 58.893 41.667 0.00 0.00 0.00 2.73
530 531 4.866486 ACCGTCATTTTCCGAATGTAGTAC 59.134 41.667 0.00 0.00 0.00 2.73
590 592 0.248094 TACTTCGATCAGACGCAGCG 60.248 55.000 14.82 14.82 30.59 5.18
690 693 9.974980 GTTTCATTTAGAAGGAAAATTGGTACA 57.025 29.630 2.57 0.00 42.02 2.90
756 761 5.072040 AGTTTCTAATTTTGGCGAATGGG 57.928 39.130 0.00 0.00 0.00 4.00
976 981 0.970937 AGAGAGTCGGGAATTGGCGA 60.971 55.000 0.00 0.00 0.00 5.54
1195 1200 1.674817 CGGAGAACTTACATTGCCGGT 60.675 52.381 1.90 0.00 34.08 5.28
1201 1206 0.255033 GGGGGCGGAGAACTTACATT 59.745 55.000 0.00 0.00 0.00 2.71
1203 1208 3.395630 GGGGGCGGAGAACTTACA 58.604 61.111 0.00 0.00 0.00 2.41
1373 1719 0.478507 CTCTTGGGTTCCACTTGGGT 59.521 55.000 0.00 0.00 38.11 4.51
1454 1800 2.134346 CGGGGCACAGTGAAATTTTTG 58.866 47.619 4.15 0.00 0.00 2.44
1460 1807 2.410322 ATCTGCGGGGCACAGTGAAA 62.410 55.000 4.15 0.00 36.50 2.69
1578 1925 1.237285 GGACACACGCCTTGCAGAAT 61.237 55.000 0.00 0.00 0.00 2.40
1714 2061 5.790593 AGAAATTTGCTCACATGCTGAAAT 58.209 33.333 0.00 0.00 0.00 2.17
1721 2068 6.210796 TGAAACAGAGAAATTTGCTCACATG 58.789 36.000 7.15 0.00 34.85 3.21
1907 2255 3.685139 ATTAGTACTGCATGATCGGGG 57.315 47.619 5.39 0.00 0.00 5.73
1930 2289 8.761575 TTTTTCAAGTATCTGCATCAAAATCC 57.238 30.769 0.00 0.00 0.00 3.01
1936 2295 7.363181 CCTGGAATTTTTCAAGTATCTGCATCA 60.363 37.037 0.00 0.00 0.00 3.07
1937 2296 6.976925 CCTGGAATTTTTCAAGTATCTGCATC 59.023 38.462 0.00 0.00 0.00 3.91
2067 2426 1.586422 CCATCATCGTACAAGCAGGG 58.414 55.000 0.00 0.00 0.00 4.45
2185 2544 1.442769 AAAGGTCATGTAGCACAGCG 58.557 50.000 0.00 0.00 0.00 5.18
2353 2714 9.947433 ATTTGCAATTCCTGAAAAAGATAATCA 57.053 25.926 0.00 0.00 36.09 2.57
2448 2809 5.186409 AGCCATTCAATTTTCACTACAGCAT 59.814 36.000 0.00 0.00 0.00 3.79
2490 2851 6.147864 AGCAGACATAACAACAAACACATT 57.852 33.333 0.00 0.00 0.00 2.71
2524 2885 9.807649 GTCATCATGCCAAAGAAATATTAGTTT 57.192 29.630 0.00 0.00 0.00 2.66
2733 3652 4.764172 AGACATCATACTCAAGAACCTGC 58.236 43.478 0.00 0.00 0.00 4.85
2829 3748 8.301002 TGTTGCCCTAAACAAAATGTATACTTC 58.699 33.333 4.17 0.00 37.12 3.01
2880 3799 7.182817 AGTGTTTGGTTAGCATCTAGTGATA 57.817 36.000 0.00 0.00 0.00 2.15
2939 3859 4.655649 TCTTAGCACCTACCATCACATCAT 59.344 41.667 0.00 0.00 0.00 2.45
2972 3892 9.638239 CATAACCACACAAGTAATTTATTTGCT 57.362 29.630 10.56 0.00 0.00 3.91
2985 3921 9.906660 AAAACATGTTATACATAACCACACAAG 57.093 29.630 12.39 0.00 41.41 3.16
3013 3949 5.939457 ACTTCCGATTTTGCTAGTTAAAGC 58.061 37.500 0.00 0.00 43.08 3.51
3074 4010 8.762481 ATTTCCTAAACCCCATTTAGTATCAC 57.238 34.615 5.86 0.00 45.84 3.06
3079 4015 6.194967 CCAGATTTCCTAAACCCCATTTAGT 58.805 40.000 5.86 0.00 45.84 2.24
3080 4016 6.096846 CACCAGATTTCCTAAACCCCATTTAG 59.903 42.308 0.34 0.34 46.54 1.85
3256 4221 7.388776 GCAGATTGCAAGGTAATATGATAGTGA 59.611 37.037 4.94 0.00 44.26 3.41
3345 4310 2.306847 CCATACATAAGCACCAACCCC 58.693 52.381 0.00 0.00 0.00 4.95
3346 4311 1.681264 GCCATACATAAGCACCAACCC 59.319 52.381 0.00 0.00 0.00 4.11
3364 4329 7.158099 AGGACAAACTACATTTCAATAAGCC 57.842 36.000 0.00 0.00 0.00 4.35
3396 4361 0.108585 TTCCACAGCACTCCTGGAAC 59.891 55.000 0.00 0.00 46.14 3.62
3494 4459 6.966435 ATTCAAATTTAAACATTCCTGGCG 57.034 33.333 0.00 0.00 0.00 5.69
3541 4512 7.928167 TCATTGTTTATATGAGCTACAGAGGTG 59.072 37.037 0.00 0.00 32.11 4.00
3559 4530 7.989416 AATGGCAAAAATCAGATCATTGTTT 57.011 28.000 0.00 0.00 0.00 2.83
3560 4531 8.316214 ACTAATGGCAAAAATCAGATCATTGTT 58.684 29.630 0.00 0.00 0.00 2.83
3595 4566 4.253685 ACTGAAATGTAGAATGTGACCCG 58.746 43.478 0.00 0.00 0.00 5.28
3673 4644 5.180868 ACAGAATGAAGCAACACTCAAGATC 59.819 40.000 0.00 0.00 39.69 2.75
3681 4652 5.181748 AGGATAGACAGAATGAAGCAACAC 58.818 41.667 0.00 0.00 39.69 3.32
3769 4740 4.621068 TTAGAACACAGCAATAGCATGC 57.379 40.909 10.51 10.51 46.78 4.06
3864 4972 6.271159 GGAATGTGGGGTCTAAGAAGAGATAT 59.729 42.308 0.00 0.00 30.45 1.63
3967 5075 6.202954 CAGTATGTTATTTACTACTGCTGGCC 59.797 42.308 0.00 0.00 34.64 5.36
4138 5246 4.388577 AGTAGCCTTTTTCCTGGAATGT 57.611 40.909 10.45 0.00 0.00 2.71
4254 5362 2.813754 TGTTGAGCTGTAACAAGGCATC 59.186 45.455 9.94 0.00 35.29 3.91
4430 5540 4.217118 GCAAACTCCATCAAACACTCAGAT 59.783 41.667 0.00 0.00 0.00 2.90
4431 5541 3.565482 GCAAACTCCATCAAACACTCAGA 59.435 43.478 0.00 0.00 0.00 3.27
4432 5542 3.316029 TGCAAACTCCATCAAACACTCAG 59.684 43.478 0.00 0.00 0.00 3.35
4472 5582 6.266330 GCTTATCTTCTTTGGATTGCCCTAAT 59.734 38.462 0.00 0.00 35.38 1.73
4510 5620 8.515695 AATATCTGAAATGTCAATCTGAAGCA 57.484 30.769 0.00 0.00 31.88 3.91
4599 5713 8.747538 AAAGAAACAGTAAGTACACCTGAAAT 57.252 30.769 11.85 0.59 0.00 2.17
4723 5838 6.663565 CCTTTTGAGCTTCTTAGTTTGACTC 58.336 40.000 0.00 0.00 0.00 3.36
4740 5855 1.999648 AATGCACCTGAGCCTTTTGA 58.000 45.000 0.00 0.00 0.00 2.69
4873 5989 9.102757 GACTGACTGAAAAAGCTTGATATGATA 57.897 33.333 0.00 0.00 0.00 2.15
4874 5990 7.201591 CGACTGACTGAAAAAGCTTGATATGAT 60.202 37.037 0.00 0.00 0.00 2.45
4875 5991 6.091305 CGACTGACTGAAAAAGCTTGATATGA 59.909 38.462 0.00 0.00 0.00 2.15
4876 5992 6.128445 ACGACTGACTGAAAAAGCTTGATATG 60.128 38.462 0.00 0.00 0.00 1.78
4877 5993 5.934625 ACGACTGACTGAAAAAGCTTGATAT 59.065 36.000 0.00 0.00 0.00 1.63
5123 6242 5.437289 TGTACAATTTCTCTGGCAACTTG 57.563 39.130 0.00 0.00 37.61 3.16
5156 6275 2.191128 AGCAAGCCACCTGAGTAAAG 57.809 50.000 0.00 0.00 0.00 1.85
5169 6288 0.250901 TCTCACAGGGGAAAGCAAGC 60.251 55.000 0.00 0.00 0.00 4.01
5170 6289 2.503895 ATCTCACAGGGGAAAGCAAG 57.496 50.000 0.00 0.00 0.00 4.01
5171 6290 4.079253 GTTTATCTCACAGGGGAAAGCAA 58.921 43.478 0.00 0.00 0.00 3.91
5172 6291 3.073798 TGTTTATCTCACAGGGGAAAGCA 59.926 43.478 0.00 0.00 0.00 3.91
5212 6331 5.209818 TGAGACAAACGAGATGTAAAGGT 57.790 39.130 0.00 0.00 0.00 3.50
5213 6332 5.389935 GCTTGAGACAAACGAGATGTAAAGG 60.390 44.000 0.00 0.00 0.00 3.11
5218 6337 3.111853 TGCTTGAGACAAACGAGATGT 57.888 42.857 0.00 0.00 0.00 3.06
5224 6343 4.214437 GACTTCAATGCTTGAGACAAACG 58.786 43.478 0.00 0.00 41.38 3.60
5244 6363 5.305585 TGGAGTCCAAGTGAATTAACTGAC 58.694 41.667 10.20 0.90 0.00 3.51
5277 6396 6.114767 TCATCTATGCACAAAGTAATCTGCA 58.885 36.000 0.00 0.00 36.69 4.41
5279 6398 6.259387 TGCTCATCTATGCACAAAGTAATCTG 59.741 38.462 0.00 0.00 33.94 2.90
5289 6408 3.941573 TGAAGTTGCTCATCTATGCACA 58.058 40.909 0.00 0.00 39.05 4.57
5297 6416 3.881688 AGTATGCCATGAAGTTGCTCATC 59.118 43.478 0.00 0.00 33.66 2.92
5302 6421 3.503748 GGGATAGTATGCCATGAAGTTGC 59.496 47.826 15.39 0.00 40.99 4.17
5309 6428 2.644299 TGGAAGGGGATAGTATGCCATG 59.356 50.000 21.00 0.00 43.48 3.66
5321 6440 5.542251 CCAAAGAAATTTAGTTGGAAGGGGA 59.458 40.000 20.48 0.00 42.66 4.81
5326 6445 9.157104 GTTTTGACCAAAGAAATTTAGTTGGAA 57.843 29.630 27.35 17.20 42.66 3.53
5329 6448 9.919348 CATGTTTTGACCAAAGAAATTTAGTTG 57.081 29.630 0.00 0.00 0.00 3.16
5346 6465 9.487790 GTTGGATTAGAAATTTCCATGTTTTGA 57.512 29.630 14.61 0.00 39.22 2.69
5393 6531 7.041848 GCATGGTTTCAGTTAATGCTTCTTTTT 60.042 33.333 0.00 0.00 40.34 1.94
5437 6657 1.333619 ACGCATTGGTGTCTTCACAAC 59.666 47.619 0.98 0.00 45.45 3.32
5452 6672 4.260985 TGGAGATTCATTAACACACGCAT 58.739 39.130 0.00 0.00 0.00 4.73
5453 6673 3.669536 TGGAGATTCATTAACACACGCA 58.330 40.909 0.00 0.00 0.00 5.24
5454 6674 3.684788 ACTGGAGATTCATTAACACACGC 59.315 43.478 0.00 0.00 0.00 5.34
5456 6676 5.048782 TGCAACTGGAGATTCATTAACACAC 60.049 40.000 0.00 0.00 0.00 3.82
5468 6688 4.384647 GGGAGATACTTTGCAACTGGAGAT 60.385 45.833 0.00 0.00 0.00 2.75
5470 6690 3.054802 AGGGAGATACTTTGCAACTGGAG 60.055 47.826 0.00 0.00 0.00 3.86
5473 6693 2.421424 GCAGGGAGATACTTTGCAACTG 59.579 50.000 0.00 0.70 34.99 3.16
5474 6694 2.040278 TGCAGGGAGATACTTTGCAACT 59.960 45.455 0.00 0.00 41.34 3.16
5493 6713 7.550196 AGGAATGTTTTGGATAATGTTCATTGC 59.450 33.333 8.11 0.00 34.39 3.56
5499 6732 9.889128 CCATTAAGGAATGTTTTGGATAATGTT 57.111 29.630 0.00 0.00 40.87 2.71
5508 6741 4.567971 TGCTGCCATTAAGGAATGTTTTG 58.432 39.130 0.00 0.00 40.87 2.44
5525 6758 8.779603 TTTAATAAAAATGCTTTTGTTGCTGC 57.220 26.923 0.00 0.00 36.75 5.25
5562 6795 9.726232 CATTCAAGGATTAAGTGATTATGTGTG 57.274 33.333 0.00 0.00 0.00 3.82
5563 6796 8.408601 GCATTCAAGGATTAAGTGATTATGTGT 58.591 33.333 0.00 0.00 0.00 3.72
5564 6797 8.407832 TGCATTCAAGGATTAAGTGATTATGTG 58.592 33.333 0.00 0.00 0.00 3.21
5566 6799 9.622004 GATGCATTCAAGGATTAAGTGATTATG 57.378 33.333 0.00 0.00 0.00 1.90
5567 6800 9.358406 TGATGCATTCAAGGATTAAGTGATTAT 57.642 29.630 0.00 0.00 0.00 1.28
5570 6803 7.834881 ATGATGCATTCAAGGATTAAGTGAT 57.165 32.000 0.00 0.00 38.03 3.06
5571 6804 7.649533 AATGATGCATTCAAGGATTAAGTGA 57.350 32.000 0.00 0.00 38.03 3.41
5572 6805 8.195436 AGAAATGATGCATTCAAGGATTAAGTG 58.805 33.333 0.00 0.00 38.03 3.16
5573 6806 8.302515 AGAAATGATGCATTCAAGGATTAAGT 57.697 30.769 0.00 0.00 38.03 2.24
5625 7003 7.403312 TTTTATGGGGTGTGTCAATCTAATG 57.597 36.000 0.00 0.00 0.00 1.90
5626 7004 7.673926 ACTTTTTATGGGGTGTGTCAATCTAAT 59.326 33.333 0.00 0.00 0.00 1.73
5627 7005 7.007723 ACTTTTTATGGGGTGTGTCAATCTAA 58.992 34.615 0.00 0.00 0.00 2.10
5628 7006 6.548321 ACTTTTTATGGGGTGTGTCAATCTA 58.452 36.000 0.00 0.00 0.00 1.98
5629 7007 5.393866 ACTTTTTATGGGGTGTGTCAATCT 58.606 37.500 0.00 0.00 0.00 2.40
5630 7008 5.476945 AGACTTTTTATGGGGTGTGTCAATC 59.523 40.000 0.00 0.00 0.00 2.67
5631 7009 5.393866 AGACTTTTTATGGGGTGTGTCAAT 58.606 37.500 0.00 0.00 0.00 2.57
5632 7010 4.798882 AGACTTTTTATGGGGTGTGTCAA 58.201 39.130 0.00 0.00 0.00 3.18
5633 7011 4.141367 TGAGACTTTTTATGGGGTGTGTCA 60.141 41.667 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.