Multiple sequence alignment - TraesCS3A01G367300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G367300 chr3A 100.000 4136 0 0 1 4136 616278769 616282904 0.000000e+00 7638
1 TraesCS3A01G367300 chr3A 91.156 294 24 2 422 714 196422009 196421717 8.330000e-107 398
2 TraesCS3A01G367300 chr3B 96.348 3313 81 17 713 4002 630296917 630300212 0.000000e+00 5411
3 TraesCS3A01G367300 chr3B 94.245 139 5 2 4001 4136 630300294 630300432 4.190000e-50 209
4 TraesCS3A01G367300 chr3D 93.528 3152 128 30 844 3961 473821592 473824701 0.000000e+00 4621
5 TraesCS3A01G367300 chr3D 90.970 299 26 1 416 714 81841269 81841566 6.440000e-108 401
6 TraesCS3A01G367300 chr4A 91.475 305 26 0 414 718 112768655 112768351 1.780000e-113 420
7 TraesCS3A01G367300 chr4A 90.584 308 26 2 407 714 441498974 441499278 4.980000e-109 405
8 TraesCS3A01G367300 chr2D 91.060 302 27 0 413 714 194750236 194750537 3.850000e-110 409
9 TraesCS3A01G367300 chr5A 90.820 305 26 2 417 719 165330901 165330597 1.380000e-109 407
10 TraesCS3A01G367300 chr5A 90.667 300 27 1 419 718 540627472 540627174 8.330000e-107 398
11 TraesCS3A01G367300 chr1A 91.216 296 26 0 419 714 350750801 350750506 1.790000e-108 403
12 TraesCS3A01G367300 chr7A 91.409 291 21 1 411 701 93490691 93490405 3.000000e-106 396


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G367300 chr3A 616278769 616282904 4135 False 7638 7638 100.0000 1 4136 1 chr3A.!!$F1 4135
1 TraesCS3A01G367300 chr3B 630296917 630300432 3515 False 2810 5411 95.2965 713 4136 2 chr3B.!!$F1 3423
2 TraesCS3A01G367300 chr3D 473821592 473824701 3109 False 4621 4621 93.5280 844 3961 1 chr3D.!!$F2 3117

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.032815 TCATCTGCCGTCGTGTTTGA 59.967 50.0 0.00 0.0 0.00 2.69 F
217 218 0.036732 TTGAGCGGCCACAATCTTCT 59.963 50.0 2.24 0.0 0.00 2.85 F
342 343 0.037419 ACATTCCAACGGGCATTTGC 60.037 50.0 0.00 0.0 41.14 3.68 F
430 431 0.111253 AACACTCAGGCCTCCTTTGG 59.889 55.0 0.00 0.0 0.00 3.28 F
841 846 0.179000 CTCTTCCTCCACCATTCCCG 59.821 60.0 0.00 0.0 0.00 5.14 F
1815 1820 0.754957 CTGGTGCAAGTCCCAACCAA 60.755 55.0 0.00 0.0 0.00 3.67 F
2866 2871 0.033366 GAACAACTGCCGCCCAAATT 59.967 50.0 0.00 0.0 0.00 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2012 0.523072 CAACATCAGGAACAAGCCCG 59.477 55.000 0.00 0.0 0.00 6.13 R
2133 2138 8.162848 AGAGCCCCTTCAGCATTATATTATAA 57.837 34.615 0.00 0.0 0.00 0.98 R
2251 2256 4.422073 TCTCACATAACCCATGGATCAC 57.578 45.455 15.22 0.0 39.13 3.06 R
2515 2520 2.880443 ACCATTGTTTGCCATCTCACT 58.120 42.857 0.00 0.0 0.00 3.41 R
2850 2855 1.272212 ACTAAATTTGGGCGGCAGTTG 59.728 47.619 12.47 0.0 0.00 3.16 R
3039 3044 0.242017 GTGCAAGCACCTCATCCAAC 59.758 55.000 14.01 0.0 40.79 3.77 R
3672 3714 1.939838 GCTGTAGGAGTTTGGTGTCCG 60.940 57.143 0.00 0.0 37.97 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.438216 TGATGTGCCAATCTCCAAAGA 57.562 42.857 0.00 0.00 35.54 2.52
22 23 3.765381 TGATGTGCCAATCTCCAAAGAA 58.235 40.909 0.00 0.00 34.49 2.52
23 24 3.760151 TGATGTGCCAATCTCCAAAGAAG 59.240 43.478 0.00 0.00 34.49 2.85
24 25 3.507162 TGTGCCAATCTCCAAAGAAGA 57.493 42.857 0.00 0.00 34.49 2.87
25 26 3.149196 TGTGCCAATCTCCAAAGAAGAC 58.851 45.455 0.00 0.00 34.49 3.01
26 27 2.489722 GTGCCAATCTCCAAAGAAGACC 59.510 50.000 0.00 0.00 34.49 3.85
27 28 2.376518 TGCCAATCTCCAAAGAAGACCT 59.623 45.455 0.00 0.00 34.49 3.85
28 29 3.181429 TGCCAATCTCCAAAGAAGACCTT 60.181 43.478 0.00 0.00 34.49 3.50
29 30 3.829026 GCCAATCTCCAAAGAAGACCTTT 59.171 43.478 0.00 0.00 45.48 3.11
30 31 5.010282 GCCAATCTCCAAAGAAGACCTTTA 58.990 41.667 0.00 0.00 42.88 1.85
31 32 5.654209 GCCAATCTCCAAAGAAGACCTTTAT 59.346 40.000 0.00 0.00 42.88 1.40
32 33 6.183360 GCCAATCTCCAAAGAAGACCTTTATC 60.183 42.308 0.00 0.00 42.88 1.75
33 34 7.115414 CCAATCTCCAAAGAAGACCTTTATCT 58.885 38.462 0.00 0.00 42.88 1.98
34 35 7.613411 CCAATCTCCAAAGAAGACCTTTATCTT 59.387 37.037 0.00 0.00 42.88 2.40
35 36 8.457261 CAATCTCCAAAGAAGACCTTTATCTTG 58.543 37.037 0.00 0.00 42.88 3.02
36 37 6.476378 TCTCCAAAGAAGACCTTTATCTTGG 58.524 40.000 0.00 0.00 42.88 3.61
37 38 5.010282 TCCAAAGAAGACCTTTATCTTGGC 58.990 41.667 0.00 0.00 42.88 4.52
38 39 5.012893 CCAAAGAAGACCTTTATCTTGGCT 58.987 41.667 0.00 0.00 42.88 4.75
39 40 6.012858 TCCAAAGAAGACCTTTATCTTGGCTA 60.013 38.462 0.00 0.00 42.88 3.93
40 41 6.317391 CCAAAGAAGACCTTTATCTTGGCTAG 59.683 42.308 0.00 0.00 42.88 3.42
41 42 5.029807 AGAAGACCTTTATCTTGGCTAGC 57.970 43.478 6.04 6.04 39.08 3.42
42 43 4.471386 AGAAGACCTTTATCTTGGCTAGCA 59.529 41.667 18.24 0.00 39.08 3.49
43 44 4.143986 AGACCTTTATCTTGGCTAGCAC 57.856 45.455 18.24 6.66 0.00 4.40
44 45 3.777522 AGACCTTTATCTTGGCTAGCACT 59.222 43.478 18.24 0.00 0.00 4.40
45 46 4.962995 AGACCTTTATCTTGGCTAGCACTA 59.037 41.667 18.24 0.00 0.00 2.74
46 47 5.604650 AGACCTTTATCTTGGCTAGCACTAT 59.395 40.000 18.24 6.69 0.00 2.12
47 48 6.100424 AGACCTTTATCTTGGCTAGCACTATT 59.900 38.462 18.24 0.35 0.00 1.73
48 49 7.290248 AGACCTTTATCTTGGCTAGCACTATTA 59.710 37.037 18.24 0.00 0.00 0.98
49 50 7.217906 ACCTTTATCTTGGCTAGCACTATTAC 58.782 38.462 18.24 0.00 0.00 1.89
50 51 7.071321 ACCTTTATCTTGGCTAGCACTATTACT 59.929 37.037 18.24 0.00 0.00 2.24
51 52 7.600752 CCTTTATCTTGGCTAGCACTATTACTC 59.399 40.741 18.24 0.00 0.00 2.59
52 53 4.939052 TCTTGGCTAGCACTATTACTCC 57.061 45.455 18.24 0.00 0.00 3.85
53 54 3.641906 TCTTGGCTAGCACTATTACTCCC 59.358 47.826 18.24 0.00 0.00 4.30
54 55 2.326428 TGGCTAGCACTATTACTCCCC 58.674 52.381 18.24 0.00 0.00 4.81
55 56 2.326428 GGCTAGCACTATTACTCCCCA 58.674 52.381 18.24 0.00 0.00 4.96
56 57 2.907042 GGCTAGCACTATTACTCCCCAT 59.093 50.000 18.24 0.00 0.00 4.00
57 58 4.094476 GGCTAGCACTATTACTCCCCATA 58.906 47.826 18.24 0.00 0.00 2.74
58 59 4.530946 GGCTAGCACTATTACTCCCCATAA 59.469 45.833 18.24 0.00 0.00 1.90
59 60 5.012768 GGCTAGCACTATTACTCCCCATAAA 59.987 44.000 18.24 0.00 0.00 1.40
60 61 5.932883 GCTAGCACTATTACTCCCCATAAAC 59.067 44.000 10.63 0.00 0.00 2.01
61 62 6.239629 GCTAGCACTATTACTCCCCATAAACT 60.240 42.308 10.63 0.00 0.00 2.66
62 63 6.576778 AGCACTATTACTCCCCATAAACTT 57.423 37.500 0.00 0.00 0.00 2.66
63 64 6.970191 AGCACTATTACTCCCCATAAACTTT 58.030 36.000 0.00 0.00 0.00 2.66
64 65 6.828785 AGCACTATTACTCCCCATAAACTTTG 59.171 38.462 0.00 0.00 0.00 2.77
65 66 6.459710 GCACTATTACTCCCCATAAACTTTGC 60.460 42.308 0.00 0.00 0.00 3.68
66 67 6.039382 CACTATTACTCCCCATAAACTTTGCC 59.961 42.308 0.00 0.00 0.00 4.52
67 68 2.990740 ACTCCCCATAAACTTTGCCA 57.009 45.000 0.00 0.00 0.00 4.92
68 69 3.252554 ACTCCCCATAAACTTTGCCAA 57.747 42.857 0.00 0.00 0.00 4.52
69 70 3.165071 ACTCCCCATAAACTTTGCCAAG 58.835 45.455 0.00 0.00 35.92 3.61
70 71 3.181423 ACTCCCCATAAACTTTGCCAAGA 60.181 43.478 4.25 0.00 33.72 3.02
71 72 4.026052 CTCCCCATAAACTTTGCCAAGAT 58.974 43.478 4.25 0.00 33.72 2.40
72 73 4.424842 TCCCCATAAACTTTGCCAAGATT 58.575 39.130 4.25 1.29 33.72 2.40
73 74 4.843516 TCCCCATAAACTTTGCCAAGATTT 59.156 37.500 4.25 4.36 33.72 2.17
74 75 5.309282 TCCCCATAAACTTTGCCAAGATTTT 59.691 36.000 4.25 0.00 33.72 1.82
75 76 6.003326 CCCCATAAACTTTGCCAAGATTTTT 58.997 36.000 4.25 0.00 33.72 1.94
76 77 6.149308 CCCCATAAACTTTGCCAAGATTTTTC 59.851 38.462 4.25 0.00 33.72 2.29
77 78 6.709846 CCCATAAACTTTGCCAAGATTTTTCA 59.290 34.615 4.25 0.00 33.72 2.69
78 79 7.391275 CCCATAAACTTTGCCAAGATTTTTCAT 59.609 33.333 4.25 0.00 33.72 2.57
79 80 8.445493 CCATAAACTTTGCCAAGATTTTTCATC 58.555 33.333 4.25 0.00 33.72 2.92
80 81 9.211485 CATAAACTTTGCCAAGATTTTTCATCT 57.789 29.630 4.25 0.00 33.72 2.90
81 82 7.486802 AAACTTTGCCAAGATTTTTCATCTG 57.513 32.000 4.25 0.00 33.72 2.90
82 83 4.992951 ACTTTGCCAAGATTTTTCATCTGC 59.007 37.500 4.25 0.00 33.72 4.26
83 84 3.598019 TGCCAAGATTTTTCATCTGCC 57.402 42.857 0.00 0.00 0.00 4.85
84 85 2.094597 TGCCAAGATTTTTCATCTGCCG 60.095 45.455 0.00 0.00 0.00 5.69
85 86 2.094545 GCCAAGATTTTTCATCTGCCGT 60.095 45.455 0.00 0.00 0.00 5.68
86 87 3.762779 CCAAGATTTTTCATCTGCCGTC 58.237 45.455 0.00 0.00 0.00 4.79
87 88 3.419915 CAAGATTTTTCATCTGCCGTCG 58.580 45.455 0.00 0.00 0.00 5.12
88 89 2.699954 AGATTTTTCATCTGCCGTCGT 58.300 42.857 0.00 0.00 0.00 4.34
89 90 2.416547 AGATTTTTCATCTGCCGTCGTG 59.583 45.455 0.00 0.00 0.00 4.35
90 91 1.588674 TTTTTCATCTGCCGTCGTGT 58.411 45.000 0.00 0.00 0.00 4.49
91 92 1.588674 TTTTCATCTGCCGTCGTGTT 58.411 45.000 0.00 0.00 0.00 3.32
92 93 1.588674 TTTCATCTGCCGTCGTGTTT 58.411 45.000 0.00 0.00 0.00 2.83
93 94 0.865111 TTCATCTGCCGTCGTGTTTG 59.135 50.000 0.00 0.00 0.00 2.93
94 95 0.032815 TCATCTGCCGTCGTGTTTGA 59.967 50.000 0.00 0.00 0.00 2.69
95 96 0.439985 CATCTGCCGTCGTGTTTGAG 59.560 55.000 0.00 0.00 0.00 3.02
96 97 0.670546 ATCTGCCGTCGTGTTTGAGG 60.671 55.000 0.00 0.00 0.00 3.86
97 98 2.280524 TGCCGTCGTGTTTGAGGG 60.281 61.111 0.00 0.00 44.75 4.30
99 100 3.047877 CCGTCGTGTTTGAGGGCC 61.048 66.667 0.00 0.00 37.13 5.80
100 101 3.047877 CGTCGTGTTTGAGGGCCC 61.048 66.667 16.46 16.46 0.00 5.80
101 102 2.671963 GTCGTGTTTGAGGGCCCC 60.672 66.667 21.43 11.17 0.00 5.80
102 103 4.323477 TCGTGTTTGAGGGCCCCG 62.323 66.667 21.43 13.62 0.00 5.73
103 104 4.323477 CGTGTTTGAGGGCCCCGA 62.323 66.667 21.43 7.19 0.00 5.14
104 105 2.355115 GTGTTTGAGGGCCCCGAT 59.645 61.111 21.43 0.00 0.00 4.18
105 106 1.749258 GTGTTTGAGGGCCCCGATC 60.749 63.158 21.43 10.89 0.00 3.69
106 107 2.513897 GTTTGAGGGCCCCGATCG 60.514 66.667 21.43 8.51 0.00 3.69
107 108 4.483243 TTTGAGGGCCCCGATCGC 62.483 66.667 21.43 1.39 0.00 4.58
112 113 4.688966 GGGCCCCGATCGCTGATC 62.689 72.222 12.23 8.05 35.88 2.92
113 114 4.688966 GGCCCCGATCGCTGATCC 62.689 72.222 10.32 2.05 35.83 3.36
114 115 4.688966 GCCCCGATCGCTGATCCC 62.689 72.222 10.32 0.00 35.83 3.85
115 116 3.233980 CCCCGATCGCTGATCCCA 61.234 66.667 10.32 0.00 35.83 4.37
116 117 2.807107 CCCCGATCGCTGATCCCAA 61.807 63.158 10.32 0.00 35.83 4.12
117 118 1.146041 CCCGATCGCTGATCCCAAA 59.854 57.895 10.32 0.00 35.83 3.28
118 119 0.250467 CCCGATCGCTGATCCCAAAT 60.250 55.000 10.32 0.00 35.83 2.32
119 120 1.151668 CCGATCGCTGATCCCAAATC 58.848 55.000 10.32 0.00 35.83 2.17
120 121 1.270518 CCGATCGCTGATCCCAAATCT 60.271 52.381 10.32 0.00 35.83 2.40
121 122 2.487934 CGATCGCTGATCCCAAATCTT 58.512 47.619 0.26 0.00 35.83 2.40
122 123 2.478134 CGATCGCTGATCCCAAATCTTC 59.522 50.000 0.26 0.00 35.83 2.87
123 124 3.737850 GATCGCTGATCCCAAATCTTCT 58.262 45.455 7.14 0.00 33.37 2.85
124 125 3.185246 TCGCTGATCCCAAATCTTCTC 57.815 47.619 0.00 0.00 0.00 2.87
125 126 2.768527 TCGCTGATCCCAAATCTTCTCT 59.231 45.455 0.00 0.00 0.00 3.10
126 127 3.198635 TCGCTGATCCCAAATCTTCTCTT 59.801 43.478 0.00 0.00 0.00 2.85
127 128 3.559242 CGCTGATCCCAAATCTTCTCTTC 59.441 47.826 0.00 0.00 0.00 2.87
128 129 4.682859 CGCTGATCCCAAATCTTCTCTTCT 60.683 45.833 0.00 0.00 0.00 2.85
129 130 4.815846 GCTGATCCCAAATCTTCTCTTCTC 59.184 45.833 0.00 0.00 0.00 2.87
130 131 5.396660 GCTGATCCCAAATCTTCTCTTCTCT 60.397 44.000 0.00 0.00 0.00 3.10
131 132 6.633325 TGATCCCAAATCTTCTCTTCTCTT 57.367 37.500 0.00 0.00 0.00 2.85
132 133 7.025520 TGATCCCAAATCTTCTCTTCTCTTT 57.974 36.000 0.00 0.00 0.00 2.52
133 134 7.465116 TGATCCCAAATCTTCTCTTCTCTTTT 58.535 34.615 0.00 0.00 0.00 2.27
134 135 7.946776 TGATCCCAAATCTTCTCTTCTCTTTTT 59.053 33.333 0.00 0.00 0.00 1.94
157 158 5.841267 TGTGGCCACAATATCCTATATGT 57.159 39.130 36.10 0.00 38.56 2.29
158 159 6.199557 TGTGGCCACAATATCCTATATGTT 57.800 37.500 36.10 0.00 38.56 2.71
159 160 6.003326 TGTGGCCACAATATCCTATATGTTG 58.997 40.000 36.10 0.00 38.56 3.33
160 161 6.183361 TGTGGCCACAATATCCTATATGTTGA 60.183 38.462 36.10 5.89 38.56 3.18
161 162 6.714810 GTGGCCACAATATCCTATATGTTGAA 59.285 38.462 31.23 0.00 0.00 2.69
162 163 7.394359 GTGGCCACAATATCCTATATGTTGAAT 59.606 37.037 31.23 0.00 0.00 2.57
163 164 7.394077 TGGCCACAATATCCTATATGTTGAATG 59.606 37.037 0.00 0.00 0.00 2.67
164 165 7.394359 GGCCACAATATCCTATATGTTGAATGT 59.606 37.037 0.00 0.00 0.00 2.71
165 166 9.448438 GCCACAATATCCTATATGTTGAATGTA 57.552 33.333 2.10 0.00 0.00 2.29
178 179 9.730705 ATATGTTGAATGTACAGAGAATATGGG 57.269 33.333 0.33 0.00 0.00 4.00
179 180 6.356556 TGTTGAATGTACAGAGAATATGGGG 58.643 40.000 0.33 0.00 0.00 4.96
180 181 4.973168 TGAATGTACAGAGAATATGGGGC 58.027 43.478 0.33 0.00 0.00 5.80
181 182 4.660303 TGAATGTACAGAGAATATGGGGCT 59.340 41.667 0.33 0.00 0.00 5.19
182 183 5.843969 TGAATGTACAGAGAATATGGGGCTA 59.156 40.000 0.33 0.00 0.00 3.93
183 184 6.014242 TGAATGTACAGAGAATATGGGGCTAG 60.014 42.308 0.33 0.00 0.00 3.42
184 185 5.074746 TGTACAGAGAATATGGGGCTAGA 57.925 43.478 0.00 0.00 0.00 2.43
185 186 4.833380 TGTACAGAGAATATGGGGCTAGAC 59.167 45.833 0.00 0.00 0.00 2.59
186 187 4.206244 ACAGAGAATATGGGGCTAGACT 57.794 45.455 0.00 0.00 0.00 3.24
187 188 5.340891 ACAGAGAATATGGGGCTAGACTA 57.659 43.478 0.00 0.00 0.00 2.59
188 189 5.716979 ACAGAGAATATGGGGCTAGACTAA 58.283 41.667 0.00 0.00 0.00 2.24
189 190 5.777732 ACAGAGAATATGGGGCTAGACTAAG 59.222 44.000 0.00 0.00 0.00 2.18
190 191 6.013379 CAGAGAATATGGGGCTAGACTAAGA 58.987 44.000 0.00 0.00 0.00 2.10
191 192 6.495181 CAGAGAATATGGGGCTAGACTAAGAA 59.505 42.308 0.00 0.00 0.00 2.52
192 193 7.180051 CAGAGAATATGGGGCTAGACTAAGAAT 59.820 40.741 0.00 0.00 0.00 2.40
193 194 7.398904 AGAGAATATGGGGCTAGACTAAGAATC 59.601 40.741 0.00 0.00 0.00 2.52
194 195 6.442244 AGAATATGGGGCTAGACTAAGAATCC 59.558 42.308 0.00 0.00 0.00 3.01
195 196 2.690840 TGGGGCTAGACTAAGAATCCC 58.309 52.381 0.00 0.00 0.00 3.85
196 197 2.022428 TGGGGCTAGACTAAGAATCCCA 60.022 50.000 0.00 0.00 40.50 4.37
197 198 3.252351 GGGGCTAGACTAAGAATCCCAT 58.748 50.000 0.00 0.00 34.04 4.00
198 199 3.653352 GGGGCTAGACTAAGAATCCCATT 59.347 47.826 0.00 0.00 34.04 3.16
199 200 4.104897 GGGGCTAGACTAAGAATCCCATTT 59.895 45.833 0.00 0.00 34.04 2.32
200 201 5.066593 GGGCTAGACTAAGAATCCCATTTG 58.933 45.833 0.00 0.00 32.68 2.32
201 202 5.163195 GGGCTAGACTAAGAATCCCATTTGA 60.163 44.000 0.00 0.00 32.68 2.69
202 203 5.994668 GGCTAGACTAAGAATCCCATTTGAG 59.005 44.000 0.00 0.00 0.00 3.02
203 204 5.468409 GCTAGACTAAGAATCCCATTTGAGC 59.532 44.000 0.00 0.00 0.00 4.26
204 205 4.446371 AGACTAAGAATCCCATTTGAGCG 58.554 43.478 0.00 0.00 0.00 5.03
205 206 3.545703 ACTAAGAATCCCATTTGAGCGG 58.454 45.455 0.00 0.00 0.00 5.52
206 207 1.106285 AAGAATCCCATTTGAGCGGC 58.894 50.000 0.00 0.00 0.00 6.53
207 208 0.753111 AGAATCCCATTTGAGCGGCC 60.753 55.000 0.00 0.00 0.00 6.13
208 209 1.000233 AATCCCATTTGAGCGGCCA 60.000 52.632 2.24 0.00 0.00 5.36
209 210 1.322538 AATCCCATTTGAGCGGCCAC 61.323 55.000 2.24 0.00 0.00 5.01
210 211 2.497792 ATCCCATTTGAGCGGCCACA 62.498 55.000 2.24 0.00 0.00 4.17
211 212 2.274645 CCCATTTGAGCGGCCACAA 61.275 57.895 2.24 2.96 0.00 3.33
212 213 1.606885 CCCATTTGAGCGGCCACAAT 61.607 55.000 2.24 0.00 0.00 2.71
213 214 0.179129 CCATTTGAGCGGCCACAATC 60.179 55.000 2.24 0.00 0.00 2.67
214 215 0.813184 CATTTGAGCGGCCACAATCT 59.187 50.000 2.24 0.00 0.00 2.40
215 216 1.203052 CATTTGAGCGGCCACAATCTT 59.797 47.619 2.24 0.00 0.00 2.40
216 217 0.881118 TTTGAGCGGCCACAATCTTC 59.119 50.000 2.24 0.00 0.00 2.87
217 218 0.036732 TTGAGCGGCCACAATCTTCT 59.963 50.000 2.24 0.00 0.00 2.85
218 219 0.391661 TGAGCGGCCACAATCTTCTC 60.392 55.000 2.24 0.00 0.00 2.87
219 220 0.107945 GAGCGGCCACAATCTTCTCT 60.108 55.000 2.24 0.00 0.00 3.10
220 221 0.326264 AGCGGCCACAATCTTCTCTT 59.674 50.000 2.24 0.00 0.00 2.85
221 222 0.729690 GCGGCCACAATCTTCTCTTC 59.270 55.000 2.24 0.00 0.00 2.87
222 223 1.677217 GCGGCCACAATCTTCTCTTCT 60.677 52.381 2.24 0.00 0.00 2.85
223 224 2.275318 CGGCCACAATCTTCTCTTCTC 58.725 52.381 2.24 0.00 0.00 2.87
224 225 2.275318 GGCCACAATCTTCTCTTCTCG 58.725 52.381 0.00 0.00 0.00 4.04
225 226 2.093973 GGCCACAATCTTCTCTTCTCGA 60.094 50.000 0.00 0.00 0.00 4.04
226 227 3.589988 GCCACAATCTTCTCTTCTCGAA 58.410 45.455 0.00 0.00 0.00 3.71
227 228 3.616379 GCCACAATCTTCTCTTCTCGAAG 59.384 47.826 0.22 0.22 39.32 3.79
228 229 3.616379 CCACAATCTTCTCTTCTCGAAGC 59.384 47.826 1.81 0.00 38.17 3.86
229 230 3.616379 CACAATCTTCTCTTCTCGAAGCC 59.384 47.826 1.81 0.00 38.17 4.35
230 231 3.194062 CAATCTTCTCTTCTCGAAGCCC 58.806 50.000 1.81 0.00 38.17 5.19
231 232 1.187087 TCTTCTCTTCTCGAAGCCCC 58.813 55.000 1.81 0.00 38.17 5.80
232 233 0.179124 CTTCTCTTCTCGAAGCCCCG 60.179 60.000 1.81 0.00 38.28 5.73
233 234 0.898789 TTCTCTTCTCGAAGCCCCGT 60.899 55.000 1.81 0.00 38.28 5.28
234 235 1.153745 CTCTTCTCGAAGCCCCGTG 60.154 63.158 1.81 0.00 38.28 4.94
235 236 1.595993 CTCTTCTCGAAGCCCCGTGA 61.596 60.000 1.81 0.00 38.28 4.35
236 237 1.446272 CTTCTCGAAGCCCCGTGAC 60.446 63.158 0.00 0.00 32.76 3.67
237 238 2.837371 CTTCTCGAAGCCCCGTGACC 62.837 65.000 0.00 0.00 32.76 4.02
238 239 3.691342 CTCGAAGCCCCGTGACCA 61.691 66.667 0.00 0.00 0.00 4.02
239 240 3.234630 CTCGAAGCCCCGTGACCAA 62.235 63.158 0.00 0.00 0.00 3.67
240 241 2.281208 CGAAGCCCCGTGACCAAA 60.281 61.111 0.00 0.00 0.00 3.28
241 242 1.894756 CGAAGCCCCGTGACCAAAA 60.895 57.895 0.00 0.00 0.00 2.44
242 243 1.448922 CGAAGCCCCGTGACCAAAAA 61.449 55.000 0.00 0.00 0.00 1.94
243 244 0.966179 GAAGCCCCGTGACCAAAAAT 59.034 50.000 0.00 0.00 0.00 1.82
244 245 1.343142 GAAGCCCCGTGACCAAAAATT 59.657 47.619 0.00 0.00 0.00 1.82
245 246 0.966179 AGCCCCGTGACCAAAAATTC 59.034 50.000 0.00 0.00 0.00 2.17
246 247 0.966179 GCCCCGTGACCAAAAATTCT 59.034 50.000 0.00 0.00 0.00 2.40
247 248 1.067846 GCCCCGTGACCAAAAATTCTC 60.068 52.381 0.00 0.00 0.00 2.87
248 249 1.544246 CCCCGTGACCAAAAATTCTCC 59.456 52.381 0.00 0.00 0.00 3.71
249 250 2.235016 CCCGTGACCAAAAATTCTCCA 58.765 47.619 0.00 0.00 0.00 3.86
250 251 2.625790 CCCGTGACCAAAAATTCTCCAA 59.374 45.455 0.00 0.00 0.00 3.53
251 252 3.305335 CCCGTGACCAAAAATTCTCCAAG 60.305 47.826 0.00 0.00 0.00 3.61
252 253 3.317993 CCGTGACCAAAAATTCTCCAAGT 59.682 43.478 0.00 0.00 0.00 3.16
253 254 4.202111 CCGTGACCAAAAATTCTCCAAGTT 60.202 41.667 0.00 0.00 0.00 2.66
254 255 5.348164 CGTGACCAAAAATTCTCCAAGTTT 58.652 37.500 0.00 0.00 31.12 2.66
255 256 5.458779 CGTGACCAAAAATTCTCCAAGTTTC 59.541 40.000 0.00 0.00 28.50 2.78
256 257 5.458779 GTGACCAAAAATTCTCCAAGTTTCG 59.541 40.000 0.00 0.00 28.50 3.46
257 258 4.944048 ACCAAAAATTCTCCAAGTTTCGG 58.056 39.130 0.00 0.00 31.22 4.30
258 259 4.202212 ACCAAAAATTCTCCAAGTTTCGGG 60.202 41.667 0.00 0.00 29.45 5.14
259 260 4.202212 CCAAAAATTCTCCAAGTTTCGGGT 60.202 41.667 0.00 0.00 28.50 5.28
260 261 5.010213 CCAAAAATTCTCCAAGTTTCGGGTA 59.990 40.000 0.00 0.00 28.50 3.69
261 262 5.700722 AAAATTCTCCAAGTTTCGGGTAC 57.299 39.130 0.00 0.00 0.00 3.34
262 263 4.360951 AATTCTCCAAGTTTCGGGTACA 57.639 40.909 0.00 0.00 0.00 2.90
263 264 4.569719 ATTCTCCAAGTTTCGGGTACAT 57.430 40.909 0.00 0.00 0.00 2.29
264 265 5.687166 ATTCTCCAAGTTTCGGGTACATA 57.313 39.130 0.00 0.00 0.00 2.29
265 266 5.687166 TTCTCCAAGTTTCGGGTACATAT 57.313 39.130 0.00 0.00 0.00 1.78
266 267 5.687166 TCTCCAAGTTTCGGGTACATATT 57.313 39.130 0.00 0.00 0.00 1.28
267 268 5.424757 TCTCCAAGTTTCGGGTACATATTG 58.575 41.667 0.00 0.00 0.00 1.90
268 269 4.519213 TCCAAGTTTCGGGTACATATTGG 58.481 43.478 0.00 0.00 37.80 3.16
269 270 3.630312 CCAAGTTTCGGGTACATATTGGG 59.370 47.826 0.00 0.00 33.82 4.12
270 271 4.519213 CAAGTTTCGGGTACATATTGGGA 58.481 43.478 0.00 0.00 0.00 4.37
271 272 5.130350 CAAGTTTCGGGTACATATTGGGAT 58.870 41.667 0.00 0.00 0.00 3.85
272 273 5.382664 AGTTTCGGGTACATATTGGGATT 57.617 39.130 0.00 0.00 0.00 3.01
273 274 6.503560 AGTTTCGGGTACATATTGGGATTA 57.496 37.500 0.00 0.00 0.00 1.75
274 275 7.086685 AGTTTCGGGTACATATTGGGATTAT 57.913 36.000 0.00 0.00 0.00 1.28
275 276 7.166167 AGTTTCGGGTACATATTGGGATTATC 58.834 38.462 0.00 0.00 0.00 1.75
276 277 6.945636 TTCGGGTACATATTGGGATTATCT 57.054 37.500 0.00 0.00 0.00 1.98
277 278 6.294361 TCGGGTACATATTGGGATTATCTG 57.706 41.667 0.00 0.00 0.00 2.90
278 279 6.020389 TCGGGTACATATTGGGATTATCTGA 58.980 40.000 0.00 0.00 0.00 3.27
279 280 6.499000 TCGGGTACATATTGGGATTATCTGAA 59.501 38.462 0.00 0.00 0.00 3.02
280 281 7.182026 TCGGGTACATATTGGGATTATCTGAAT 59.818 37.037 0.00 0.00 0.00 2.57
281 282 7.829211 CGGGTACATATTGGGATTATCTGAATT 59.171 37.037 0.00 0.00 0.00 2.17
282 283 8.960591 GGGTACATATTGGGATTATCTGAATTG 58.039 37.037 0.00 0.00 0.00 2.32
283 284 8.462016 GGTACATATTGGGATTATCTGAATTGC 58.538 37.037 0.00 0.00 0.00 3.56
284 285 9.013229 GTACATATTGGGATTATCTGAATTGCA 57.987 33.333 0.00 0.00 0.00 4.08
285 286 8.118976 ACATATTGGGATTATCTGAATTGCAG 57.881 34.615 0.00 0.00 46.31 4.41
286 287 4.924305 TTGGGATTATCTGAATTGCAGC 57.076 40.909 0.00 0.00 44.52 5.25
287 288 3.900971 TGGGATTATCTGAATTGCAGCA 58.099 40.909 0.00 0.00 44.52 4.41
288 289 3.887110 TGGGATTATCTGAATTGCAGCAG 59.113 43.478 0.00 6.90 44.52 4.24
289 290 3.305199 GGGATTATCTGAATTGCAGCAGC 60.305 47.826 0.00 0.00 44.52 5.25
300 301 2.337361 GCAGCAGCATCATATGGCA 58.663 52.632 2.13 0.00 41.58 4.92
301 302 0.671796 GCAGCAGCATCATATGGCAA 59.328 50.000 2.13 0.00 41.58 4.52
302 303 1.067974 GCAGCAGCATCATATGGCAAA 59.932 47.619 2.13 0.00 41.58 3.68
303 304 2.482316 GCAGCAGCATCATATGGCAAAA 60.482 45.455 2.13 0.00 41.58 2.44
304 305 3.120792 CAGCAGCATCATATGGCAAAAC 58.879 45.455 2.13 0.00 0.00 2.43
305 306 2.761767 AGCAGCATCATATGGCAAAACA 59.238 40.909 2.13 0.00 0.00 2.83
306 307 2.861935 GCAGCATCATATGGCAAAACAC 59.138 45.455 2.13 0.00 0.00 3.32
307 308 3.429822 GCAGCATCATATGGCAAAACACT 60.430 43.478 2.13 0.00 0.00 3.55
308 309 4.751060 CAGCATCATATGGCAAAACACTT 58.249 39.130 2.13 0.00 0.00 3.16
309 310 4.565166 CAGCATCATATGGCAAAACACTTG 59.435 41.667 2.13 0.00 0.00 3.16
310 311 3.307782 GCATCATATGGCAAAACACTTGC 59.692 43.478 2.13 0.78 44.22 4.01
311 312 4.751060 CATCATATGGCAAAACACTTGCT 58.249 39.130 9.15 0.00 44.36 3.91
312 313 4.439305 TCATATGGCAAAACACTTGCTC 57.561 40.909 9.15 1.25 44.36 4.26
313 314 3.825585 TCATATGGCAAAACACTTGCTCA 59.174 39.130 9.15 6.33 44.36 4.26
314 315 4.280425 TCATATGGCAAAACACTTGCTCAA 59.720 37.500 9.15 0.00 44.36 3.02
315 316 2.582728 TGGCAAAACACTTGCTCAAG 57.417 45.000 9.15 7.99 44.36 3.02
316 317 1.211743 GGCAAAACACTTGCTCAAGC 58.788 50.000 9.36 0.00 44.36 4.01
326 327 4.208632 GCTCAAGCAGCGGTACAT 57.791 55.556 0.00 0.00 38.76 2.29
327 328 2.471255 GCTCAAGCAGCGGTACATT 58.529 52.632 0.00 0.00 38.76 2.71
328 329 0.375106 GCTCAAGCAGCGGTACATTC 59.625 55.000 0.00 0.00 38.76 2.67
329 330 1.009829 CTCAAGCAGCGGTACATTCC 58.990 55.000 0.00 0.00 0.00 3.01
330 331 0.323302 TCAAGCAGCGGTACATTCCA 59.677 50.000 0.00 0.00 0.00 3.53
331 332 1.164411 CAAGCAGCGGTACATTCCAA 58.836 50.000 0.00 0.00 0.00 3.53
332 333 1.135689 CAAGCAGCGGTACATTCCAAC 60.136 52.381 0.00 0.00 0.00 3.77
333 334 1.019278 AGCAGCGGTACATTCCAACG 61.019 55.000 0.00 0.00 0.00 4.10
334 335 1.977594 GCAGCGGTACATTCCAACGG 61.978 60.000 0.00 0.00 0.00 4.44
335 336 1.078708 AGCGGTACATTCCAACGGG 60.079 57.895 0.00 0.00 0.00 5.28
336 337 2.757056 GCGGTACATTCCAACGGGC 61.757 63.158 0.00 0.00 0.00 6.13
337 338 1.376166 CGGTACATTCCAACGGGCA 60.376 57.895 0.00 0.00 0.00 5.36
338 339 0.746563 CGGTACATTCCAACGGGCAT 60.747 55.000 0.00 0.00 0.00 4.40
339 340 1.470051 GGTACATTCCAACGGGCATT 58.530 50.000 0.00 0.00 0.00 3.56
340 341 1.822371 GGTACATTCCAACGGGCATTT 59.178 47.619 0.00 0.00 0.00 2.32
341 342 2.416701 GGTACATTCCAACGGGCATTTG 60.417 50.000 0.00 0.00 0.00 2.32
342 343 0.037419 ACATTCCAACGGGCATTTGC 60.037 50.000 0.00 0.00 41.14 3.68
343 344 0.247185 CATTCCAACGGGCATTTGCT 59.753 50.000 2.12 0.00 41.70 3.91
344 345 0.247185 ATTCCAACGGGCATTTGCTG 59.753 50.000 2.12 0.00 41.70 4.41
345 346 0.825425 TTCCAACGGGCATTTGCTGA 60.825 50.000 2.12 0.00 41.70 4.26
346 347 0.611618 TCCAACGGGCATTTGCTGAT 60.612 50.000 2.12 0.00 41.70 2.90
347 348 0.247185 CCAACGGGCATTTGCTGATT 59.753 50.000 2.12 0.00 41.70 2.57
348 349 1.632422 CAACGGGCATTTGCTGATTC 58.368 50.000 2.12 0.00 41.70 2.52
349 350 1.067706 CAACGGGCATTTGCTGATTCA 60.068 47.619 2.12 0.00 41.70 2.57
350 351 1.255882 ACGGGCATTTGCTGATTCAA 58.744 45.000 2.12 0.00 41.70 2.69
351 352 1.826720 ACGGGCATTTGCTGATTCAAT 59.173 42.857 2.12 0.00 41.70 2.57
352 353 3.023119 ACGGGCATTTGCTGATTCAATA 58.977 40.909 2.12 0.00 41.70 1.90
353 354 3.446873 ACGGGCATTTGCTGATTCAATAA 59.553 39.130 2.12 0.00 41.70 1.40
354 355 4.046462 CGGGCATTTGCTGATTCAATAAG 58.954 43.478 2.12 0.00 41.70 1.73
355 356 4.440525 CGGGCATTTGCTGATTCAATAAGT 60.441 41.667 2.12 0.00 41.70 2.24
356 357 5.422145 GGGCATTTGCTGATTCAATAAGTT 58.578 37.500 2.12 0.00 41.70 2.66
357 358 5.521372 GGGCATTTGCTGATTCAATAAGTTC 59.479 40.000 2.12 0.00 41.70 3.01
358 359 6.335777 GGCATTTGCTGATTCAATAAGTTCT 58.664 36.000 2.12 0.00 41.70 3.01
359 360 6.474751 GGCATTTGCTGATTCAATAAGTTCTC 59.525 38.462 2.12 0.00 41.70 2.87
360 361 7.031372 GCATTTGCTGATTCAATAAGTTCTCA 58.969 34.615 0.00 0.00 38.21 3.27
361 362 7.008992 GCATTTGCTGATTCAATAAGTTCTCAC 59.991 37.037 0.00 0.00 38.21 3.51
362 363 7.509141 TTTGCTGATTCAATAAGTTCTCACA 57.491 32.000 0.00 0.00 0.00 3.58
363 364 6.486253 TGCTGATTCAATAAGTTCTCACAC 57.514 37.500 0.00 0.00 0.00 3.82
364 365 5.120674 TGCTGATTCAATAAGTTCTCACACG 59.879 40.000 0.00 0.00 0.00 4.49
365 366 5.348724 GCTGATTCAATAAGTTCTCACACGA 59.651 40.000 0.00 0.00 0.00 4.35
366 367 6.454848 GCTGATTCAATAAGTTCTCACACGAG 60.455 42.308 0.00 0.00 40.98 4.18
367 368 6.455647 TGATTCAATAAGTTCTCACACGAGT 58.544 36.000 0.00 0.00 40.44 4.18
368 369 6.929049 TGATTCAATAAGTTCTCACACGAGTT 59.071 34.615 0.00 0.00 40.44 3.01
369 370 6.525121 TTCAATAAGTTCTCACACGAGTTG 57.475 37.500 0.00 0.00 40.44 3.16
370 371 5.838529 TCAATAAGTTCTCACACGAGTTGA 58.161 37.500 0.00 0.00 40.44 3.18
371 372 6.277605 TCAATAAGTTCTCACACGAGTTGAA 58.722 36.000 0.00 0.00 40.44 2.69
372 373 6.200286 TCAATAAGTTCTCACACGAGTTGAAC 59.800 38.462 15.66 15.66 40.44 3.18
373 374 3.802948 AGTTCTCACACGAGTTGAACT 57.197 42.857 18.47 18.47 40.80 3.01
374 375 3.707793 AGTTCTCACACGAGTTGAACTC 58.292 45.455 15.12 15.12 41.28 3.01
375 376 3.130516 AGTTCTCACACGAGTTGAACTCA 59.869 43.478 23.50 4.32 45.30 3.41
376 377 3.079960 TCTCACACGAGTTGAACTCAC 57.920 47.619 23.50 0.07 45.30 3.51
377 378 2.128035 CTCACACGAGTTGAACTCACC 58.872 52.381 23.50 0.00 45.30 4.02
378 379 1.478916 TCACACGAGTTGAACTCACCA 59.521 47.619 23.50 1.35 45.30 4.17
379 380 2.102420 TCACACGAGTTGAACTCACCAT 59.898 45.455 23.50 4.60 45.30 3.55
380 381 2.476619 CACACGAGTTGAACTCACCATC 59.523 50.000 23.50 0.00 45.30 3.51
381 382 2.102420 ACACGAGTTGAACTCACCATCA 59.898 45.455 23.50 0.00 45.30 3.07
382 383 2.476619 CACGAGTTGAACTCACCATCAC 59.523 50.000 23.50 0.00 45.30 3.06
383 384 1.721389 CGAGTTGAACTCACCATCACG 59.279 52.381 23.50 5.38 45.30 4.35
384 385 2.755650 GAGTTGAACTCACCATCACGT 58.244 47.619 19.73 0.00 44.45 4.49
385 386 2.476619 GAGTTGAACTCACCATCACGTG 59.523 50.000 19.73 9.94 44.45 4.49
386 387 4.650740 GAGTTGAACTCACCATCACGTGG 61.651 52.174 19.73 1.66 44.45 4.94
394 395 3.605013 CCATCACGTGGTGTCTCAA 57.395 52.632 26.25 0.00 43.44 3.02
395 396 1.877637 CCATCACGTGGTGTCTCAAA 58.122 50.000 26.25 0.00 43.44 2.69
396 397 1.531149 CCATCACGTGGTGTCTCAAAC 59.469 52.381 26.25 0.00 43.44 2.93
397 398 1.531149 CATCACGTGGTGTCTCAAACC 59.469 52.381 20.85 0.00 38.26 3.27
398 399 0.528901 TCACGTGGTGTCTCAAACCG 60.529 55.000 17.00 0.00 40.86 4.44
399 400 0.528901 CACGTGGTGTCTCAAACCGA 60.529 55.000 7.95 0.00 40.86 4.69
400 401 0.249322 ACGTGGTGTCTCAAACCGAG 60.249 55.000 0.00 0.00 40.86 4.63
401 402 0.249322 CGTGGTGTCTCAAACCGAGT 60.249 55.000 0.00 0.00 42.88 4.18
402 403 1.805120 CGTGGTGTCTCAAACCGAGTT 60.805 52.381 0.00 0.00 42.88 3.01
403 404 2.285977 GTGGTGTCTCAAACCGAGTTT 58.714 47.619 0.00 0.00 42.88 2.66
404 405 2.681344 GTGGTGTCTCAAACCGAGTTTT 59.319 45.455 0.03 0.00 42.88 2.43
405 406 3.128068 GTGGTGTCTCAAACCGAGTTTTT 59.872 43.478 0.03 0.00 42.88 1.94
406 407 3.127895 TGGTGTCTCAAACCGAGTTTTTG 59.872 43.478 0.03 0.00 42.88 2.44
407 408 3.375922 GGTGTCTCAAACCGAGTTTTTGA 59.624 43.478 0.03 0.00 42.88 2.69
408 409 4.142556 GGTGTCTCAAACCGAGTTTTTGAA 60.143 41.667 0.03 0.00 41.32 2.69
409 410 5.395642 GTGTCTCAAACCGAGTTTTTGAAA 58.604 37.500 0.03 0.00 41.32 2.69
410 411 5.859648 GTGTCTCAAACCGAGTTTTTGAAAA 59.140 36.000 0.03 0.00 41.32 2.29
411 412 6.363896 GTGTCTCAAACCGAGTTTTTGAAAAA 59.636 34.615 0.00 0.00 41.32 1.94
427 428 2.755952 AAAAACACTCAGGCCTCCTT 57.244 45.000 0.00 0.00 0.00 3.36
428 429 2.755952 AAAACACTCAGGCCTCCTTT 57.244 45.000 0.00 0.00 0.00 3.11
429 430 1.986882 AAACACTCAGGCCTCCTTTG 58.013 50.000 0.00 0.00 0.00 2.77
430 431 0.111253 AACACTCAGGCCTCCTTTGG 59.889 55.000 0.00 0.00 0.00 3.28
431 432 1.062488 ACACTCAGGCCTCCTTTGGT 61.062 55.000 0.00 0.00 0.00 3.67
432 433 0.111253 CACTCAGGCCTCCTTTGGTT 59.889 55.000 0.00 0.00 0.00 3.67
433 434 0.853530 ACTCAGGCCTCCTTTGGTTT 59.146 50.000 0.00 0.00 0.00 3.27
434 435 1.251251 CTCAGGCCTCCTTTGGTTTG 58.749 55.000 0.00 0.00 0.00 2.93
435 436 0.850100 TCAGGCCTCCTTTGGTTTGA 59.150 50.000 0.00 0.00 0.00 2.69
436 437 1.216678 TCAGGCCTCCTTTGGTTTGAA 59.783 47.619 0.00 0.00 0.00 2.69
437 438 1.615392 CAGGCCTCCTTTGGTTTGAAG 59.385 52.381 0.00 0.00 0.00 3.02
438 439 0.969149 GGCCTCCTTTGGTTTGAAGG 59.031 55.000 0.00 0.00 44.06 3.46
449 450 7.099120 CCTTTGGTTTGAAGGAATTTCATAGG 58.901 38.462 0.00 0.00 45.25 2.57
450 451 7.039082 CCTTTGGTTTGAAGGAATTTCATAGGA 60.039 37.037 0.00 0.00 45.25 2.94
451 452 7.847711 TTGGTTTGAAGGAATTTCATAGGAA 57.152 32.000 0.00 0.00 44.90 3.36
452 453 8.434589 TTGGTTTGAAGGAATTTCATAGGAAT 57.565 30.769 0.00 0.00 44.90 3.01
453 454 8.434589 TGGTTTGAAGGAATTTCATAGGAATT 57.565 30.769 0.00 0.00 44.90 2.17
454 455 8.531146 TGGTTTGAAGGAATTTCATAGGAATTC 58.469 33.333 0.00 0.00 44.90 2.17
455 456 8.753133 GGTTTGAAGGAATTTCATAGGAATTCT 58.247 33.333 5.23 0.00 44.90 2.40
460 461 9.500785 GAAGGAATTTCATAGGAATTCTAGAGG 57.499 37.037 5.23 0.00 35.78 3.69
461 462 8.805145 AGGAATTTCATAGGAATTCTAGAGGA 57.195 34.615 5.23 0.00 31.93 3.71
462 463 9.404077 AGGAATTTCATAGGAATTCTAGAGGAT 57.596 33.333 5.23 0.00 31.93 3.24
469 470 9.707957 TCATAGGAATTCTAGAGGATAGGATTC 57.292 37.037 5.23 7.20 38.32 2.52
470 471 9.713684 CATAGGAATTCTAGAGGATAGGATTCT 57.286 37.037 13.16 5.20 38.80 2.40
473 474 9.100197 AGGAATTCTAGAGGATAGGATTCTTTC 57.900 37.037 13.16 1.30 38.80 2.62
474 475 8.318412 GGAATTCTAGAGGATAGGATTCTTTCC 58.682 40.741 13.16 2.28 45.85 3.13
485 486 3.916035 GGATTCTTTCCTTTATGGCCCT 58.084 45.455 0.00 0.00 41.78 5.19
486 487 4.290093 GGATTCTTTCCTTTATGGCCCTT 58.710 43.478 0.00 0.00 41.78 3.95
487 488 4.716784 GGATTCTTTCCTTTATGGCCCTTT 59.283 41.667 0.00 0.00 41.78 3.11
488 489 5.395657 GGATTCTTTCCTTTATGGCCCTTTG 60.396 44.000 0.00 0.00 41.78 2.77
489 490 3.440127 TCTTTCCTTTATGGCCCTTTGG 58.560 45.455 0.00 0.00 35.26 3.28
490 491 3.173151 CTTTCCTTTATGGCCCTTTGGT 58.827 45.455 0.00 0.00 35.26 3.67
491 492 3.268034 TTCCTTTATGGCCCTTTGGTT 57.732 42.857 0.00 0.00 35.26 3.67
492 493 2.815158 TCCTTTATGGCCCTTTGGTTC 58.185 47.619 0.00 0.00 35.26 3.62
493 494 2.110899 TCCTTTATGGCCCTTTGGTTCA 59.889 45.455 0.00 0.00 35.26 3.18
494 495 3.106827 CCTTTATGGCCCTTTGGTTCAT 58.893 45.455 0.00 0.00 33.99 2.57
495 496 4.017037 TCCTTTATGGCCCTTTGGTTCATA 60.017 41.667 0.00 0.00 35.26 2.15
496 497 4.342092 CCTTTATGGCCCTTTGGTTCATAG 59.658 45.833 0.00 0.00 34.12 2.23
497 498 2.459555 ATGGCCCTTTGGTTCATAGG 57.540 50.000 0.00 0.00 33.40 2.57
498 499 1.377690 TGGCCCTTTGGTTCATAGGA 58.622 50.000 0.00 0.00 35.14 2.94
499 500 1.713647 TGGCCCTTTGGTTCATAGGAA 59.286 47.619 0.00 0.00 35.14 3.36
500 501 2.314549 TGGCCCTTTGGTTCATAGGAAT 59.685 45.455 0.00 0.00 35.14 3.01
501 502 2.695147 GGCCCTTTGGTTCATAGGAATG 59.305 50.000 0.00 0.00 35.14 2.67
502 503 2.695147 GCCCTTTGGTTCATAGGAATGG 59.305 50.000 6.07 0.00 35.14 3.16
503 504 3.627237 GCCCTTTGGTTCATAGGAATGGA 60.627 47.826 6.07 0.00 35.14 3.41
504 505 4.808042 CCCTTTGGTTCATAGGAATGGAT 58.192 43.478 6.07 0.00 35.14 3.41
505 506 5.211201 CCCTTTGGTTCATAGGAATGGATT 58.789 41.667 6.07 0.00 35.14 3.01
506 507 5.302823 CCCTTTGGTTCATAGGAATGGATTC 59.697 44.000 6.07 0.00 35.14 2.52
526 527 8.605947 TGGATTCCTATTCCTACATAGAATTGG 58.394 37.037 3.95 7.41 43.65 3.16
527 528 8.606830 GGATTCCTATTCCTACATAGAATTGGT 58.393 37.037 11.79 0.00 43.14 3.67
530 531 7.974504 TCCTATTCCTACATAGAATTGGTTCC 58.025 38.462 11.79 0.00 43.14 3.62
531 532 7.794683 TCCTATTCCTACATAGAATTGGTTCCT 59.205 37.037 11.79 0.00 43.14 3.36
532 533 9.101325 CCTATTCCTACATAGAATTGGTTCCTA 57.899 37.037 6.00 0.00 39.97 2.94
535 536 7.554959 TCCTACATAGAATTGGTTCCTATCC 57.445 40.000 0.00 0.00 34.81 2.59
536 537 7.313731 TCCTACATAGAATTGGTTCCTATCCT 58.686 38.462 0.00 0.00 34.81 3.24
537 538 7.794683 TCCTACATAGAATTGGTTCCTATCCTT 59.205 37.037 0.00 0.00 34.81 3.36
538 539 8.097662 CCTACATAGAATTGGTTCCTATCCTTC 58.902 40.741 0.00 0.00 34.81 3.46
539 540 7.451731 ACATAGAATTGGTTCCTATCCTTCA 57.548 36.000 0.00 0.00 34.81 3.02
540 541 7.283329 ACATAGAATTGGTTCCTATCCTTCAC 58.717 38.462 0.00 0.00 34.81 3.18
541 542 5.779241 AGAATTGGTTCCTATCCTTCACA 57.221 39.130 0.00 0.00 34.81 3.58
542 543 6.332976 AGAATTGGTTCCTATCCTTCACAT 57.667 37.500 0.00 0.00 34.81 3.21
543 544 6.735556 AGAATTGGTTCCTATCCTTCACATT 58.264 36.000 0.00 0.00 34.81 2.71
544 545 7.184862 AGAATTGGTTCCTATCCTTCACATTT 58.815 34.615 0.00 0.00 34.81 2.32
545 546 7.340487 AGAATTGGTTCCTATCCTTCACATTTC 59.660 37.037 0.00 0.00 34.81 2.17
546 547 5.512942 TGGTTCCTATCCTTCACATTTCA 57.487 39.130 0.00 0.00 0.00 2.69
547 548 6.078456 TGGTTCCTATCCTTCACATTTCAT 57.922 37.500 0.00 0.00 0.00 2.57
548 549 7.206789 TGGTTCCTATCCTTCACATTTCATA 57.793 36.000 0.00 0.00 0.00 2.15
549 550 7.282585 TGGTTCCTATCCTTCACATTTCATAG 58.717 38.462 0.00 0.00 0.00 2.23
550 551 6.712547 GGTTCCTATCCTTCACATTTCATAGG 59.287 42.308 0.00 0.00 35.93 2.57
551 552 7.420214 GGTTCCTATCCTTCACATTTCATAGGA 60.420 40.741 2.01 2.01 39.98 2.94
552 553 7.690454 TCCTATCCTTCACATTTCATAGGAA 57.310 36.000 3.47 0.00 39.17 3.36
553 554 8.101309 TCCTATCCTTCACATTTCATAGGAAA 57.899 34.615 4.85 4.85 46.36 3.13
554 555 8.556589 TCCTATCCTTCACATTTCATAGGAAAA 58.443 33.333 6.65 0.00 45.52 2.29
555 556 9.359653 CCTATCCTTCACATTTCATAGGAAAAT 57.640 33.333 6.65 0.00 45.52 1.82
574 575 9.807921 AGGAAAATAAAAATGAACCTAGACTCA 57.192 29.630 0.00 0.00 0.00 3.41
617 618 9.705290 GGTGTTAACCAAATGACATCTTATTTT 57.295 29.630 2.48 0.00 46.75 1.82
650 651 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
651 652 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
652 653 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
653 654 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
654 655 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
655 656 9.722184 CATAGGATTTGAGATACATGTCATCTT 57.278 33.333 0.00 0.00 32.86 2.40
670 671 9.911788 ACATGTCATCTTATTTCCTACAAGATT 57.088 29.630 0.00 0.00 37.00 2.40
682 683 9.765795 ATTTCCTACAAGATTTCTATTCCTACG 57.234 33.333 0.00 0.00 0.00 3.51
683 684 8.529424 TTCCTACAAGATTTCTATTCCTACGA 57.471 34.615 0.00 0.00 0.00 3.43
684 685 8.707796 TCCTACAAGATTTCTATTCCTACGAT 57.292 34.615 0.00 0.00 0.00 3.73
685 686 9.803507 TCCTACAAGATTTCTATTCCTACGATA 57.196 33.333 0.00 0.00 0.00 2.92
752 753 1.804396 CTGCACCATTTCCGCCAACA 61.804 55.000 0.00 0.00 0.00 3.33
755 756 0.523072 CACCATTTCCGCCAACAGAG 59.477 55.000 0.00 0.00 0.00 3.35
756 757 1.244019 ACCATTTCCGCCAACAGAGC 61.244 55.000 0.00 0.00 0.00 4.09
783 784 2.541556 CCTTGCGGCTAGACTAAGAAC 58.458 52.381 13.02 0.00 0.00 3.01
790 795 3.243301 CGGCTAGACTAAGAACGCCATTA 60.243 47.826 9.61 0.00 37.39 1.90
822 827 1.235281 GGCCCAGTCGTTTCAGAACC 61.235 60.000 0.00 0.00 31.93 3.62
825 830 1.344763 CCCAGTCGTTTCAGAACCTCT 59.655 52.381 0.00 0.00 31.93 3.69
826 831 2.224305 CCCAGTCGTTTCAGAACCTCTT 60.224 50.000 0.00 0.00 31.93 2.85
829 834 2.966516 AGTCGTTTCAGAACCTCTTCCT 59.033 45.455 0.00 0.00 31.93 3.36
830 835 3.006003 AGTCGTTTCAGAACCTCTTCCTC 59.994 47.826 0.00 0.00 31.93 3.71
831 836 2.299297 TCGTTTCAGAACCTCTTCCTCC 59.701 50.000 0.00 0.00 31.93 4.30
832 837 2.037251 CGTTTCAGAACCTCTTCCTCCA 59.963 50.000 0.00 0.00 31.93 3.86
833 838 3.403968 GTTTCAGAACCTCTTCCTCCAC 58.596 50.000 0.00 0.00 0.00 4.02
834 839 1.645710 TCAGAACCTCTTCCTCCACC 58.354 55.000 0.00 0.00 0.00 4.61
835 840 1.132849 TCAGAACCTCTTCCTCCACCA 60.133 52.381 0.00 0.00 0.00 4.17
836 841 1.912043 CAGAACCTCTTCCTCCACCAT 59.088 52.381 0.00 0.00 0.00 3.55
838 843 2.573915 AGAACCTCTTCCTCCACCATTC 59.426 50.000 0.00 0.00 0.00 2.67
839 844 1.290134 ACCTCTTCCTCCACCATTCC 58.710 55.000 0.00 0.00 0.00 3.01
840 845 0.548510 CCTCTTCCTCCACCATTCCC 59.451 60.000 0.00 0.00 0.00 3.97
841 846 0.179000 CTCTTCCTCCACCATTCCCG 59.821 60.000 0.00 0.00 0.00 5.14
842 847 1.452108 CTTCCTCCACCATTCCCGC 60.452 63.158 0.00 0.00 0.00 6.13
844 849 4.856801 CCTCCACCATTCCCGCGG 62.857 72.222 21.04 21.04 0.00 6.46
879 884 1.202734 AGGATGCGACCATGAATGAGG 60.203 52.381 0.00 0.00 0.00 3.86
934 939 2.791868 AAGCCAAACCGCAACACCC 61.792 57.895 0.00 0.00 0.00 4.61
1450 1455 3.909258 GACGCCGACGCCTTCTTCA 62.909 63.158 0.00 0.00 45.53 3.02
1461 1466 1.551452 CCTTCTTCACGTCCCTCTCT 58.449 55.000 0.00 0.00 0.00 3.10
1671 1676 2.162681 GACATGGCACTTTACCTGCTT 58.837 47.619 0.00 0.00 34.84 3.91
1741 1746 2.027625 GTGCTCCGAGGGTGTTTCG 61.028 63.158 0.00 0.00 37.78 3.46
1814 1819 1.152777 CTGGTGCAAGTCCCAACCA 60.153 57.895 0.00 0.00 0.00 3.67
1815 1820 0.754957 CTGGTGCAAGTCCCAACCAA 60.755 55.000 0.00 0.00 0.00 3.67
1944 1949 8.223378 TGATTACCTATGGGATTCTGATTCAT 57.777 34.615 0.25 0.00 36.25 2.57
2007 2012 7.180051 AGGGTATATTCAGAGATGATCAAGACC 59.820 40.741 0.00 0.00 0.00 3.85
2133 2138 4.100963 TCTGGCATCCGTAATGTGATAACT 59.899 41.667 0.00 0.00 37.71 2.24
2251 2256 1.682854 ACATGGTGAGTTTTGGCACTG 59.317 47.619 0.00 0.00 35.43 3.66
2713 2718 1.761784 ACAAAAAGGTTGATGCTGCCA 59.238 42.857 0.00 0.00 0.00 4.92
2850 2855 7.156876 TCTCTCTGAGATGAAAGAGAAGAAC 57.843 40.000 8.00 0.00 46.25 3.01
2866 2871 0.033366 GAACAACTGCCGCCCAAATT 59.967 50.000 0.00 0.00 0.00 1.82
2959 2964 7.232534 TGTGGACAGCTATTTTAGAAAATGGTT 59.767 33.333 9.92 3.13 38.60 3.67
3024 3029 1.230324 GCTCTTGTCACAGAACACCC 58.770 55.000 0.00 0.00 0.00 4.61
3039 3044 4.319133 CCCGAGGGTGTCCAATTG 57.681 61.111 0.00 0.00 34.83 2.32
3183 3188 4.016444 TCTTCTTTGCCTTAATTCCGCAT 58.984 39.130 0.00 0.00 31.44 4.73
3206 3211 5.759059 TGATAGATTTCTGTTTCCATGGCT 58.241 37.500 6.96 0.00 0.00 4.75
3417 3422 6.975197 GCTTTCTAAGATAAAATGGCACCTTC 59.025 38.462 0.00 0.00 0.00 3.46
3489 3510 7.582719 TCATAGGCTTAGGATGGTTATTTTGT 58.417 34.615 0.00 0.00 0.00 2.83
3532 3553 4.384056 CTTGCCTGTCTCTTCTTTCTTCA 58.616 43.478 0.00 0.00 0.00 3.02
3672 3714 6.073980 CCATAGTACATACACGCCACAAATAC 60.074 42.308 0.00 0.00 0.00 1.89
3752 3794 6.012658 TGAGTTACAAAAGCCATGTCAATC 57.987 37.500 0.00 0.00 32.27 2.67
3813 3855 8.491152 GTGATAATGTCGAATCAAATCTACTGG 58.509 37.037 0.00 0.00 34.06 4.00
4007 4133 4.916831 GCATCTCGATGACATCTAAGACAG 59.083 45.833 13.45 11.94 41.20 3.51
4017 4143 9.073475 GATGACATCTAAGACAGAGTATTACCT 57.927 37.037 8.25 0.00 36.48 3.08
4021 4147 8.908903 ACATCTAAGACAGAGTATTACCTTCTG 58.091 37.037 10.13 10.13 43.04 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.972133 TCTTTGGAGATTGGCACATCAT 58.028 40.909 10.74 0.00 39.30 2.45
1 2 3.438216 TCTTTGGAGATTGGCACATCA 57.562 42.857 10.74 0.00 39.30 3.07
2 3 4.012374 TCTTCTTTGGAGATTGGCACATC 58.988 43.478 0.00 0.00 39.30 3.06
4 5 3.149196 GTCTTCTTTGGAGATTGGCACA 58.851 45.455 0.00 0.00 0.00 4.57
5 6 2.489722 GGTCTTCTTTGGAGATTGGCAC 59.510 50.000 0.00 0.00 0.00 5.01
6 7 2.376518 AGGTCTTCTTTGGAGATTGGCA 59.623 45.455 0.00 0.00 0.00 4.92
7 8 3.078891 AGGTCTTCTTTGGAGATTGGC 57.921 47.619 0.00 0.00 0.00 4.52
8 9 7.115414 AGATAAAGGTCTTCTTTGGAGATTGG 58.885 38.462 1.71 0.00 44.68 3.16
9 10 8.457261 CAAGATAAAGGTCTTCTTTGGAGATTG 58.543 37.037 1.71 0.00 44.68 2.67
10 11 7.613411 CCAAGATAAAGGTCTTCTTTGGAGATT 59.387 37.037 1.71 0.00 44.68 2.40
11 12 7.115414 CCAAGATAAAGGTCTTCTTTGGAGAT 58.885 38.462 1.71 0.00 44.68 2.75
12 13 6.476378 CCAAGATAAAGGTCTTCTTTGGAGA 58.524 40.000 1.71 0.00 44.68 3.71
13 14 5.124617 GCCAAGATAAAGGTCTTCTTTGGAG 59.875 44.000 14.14 0.00 44.68 3.86
14 15 5.010282 GCCAAGATAAAGGTCTTCTTTGGA 58.990 41.667 14.14 0.00 44.68 3.53
15 16 5.012893 AGCCAAGATAAAGGTCTTCTTTGG 58.987 41.667 1.71 0.00 44.68 3.28
16 17 6.183360 GCTAGCCAAGATAAAGGTCTTCTTTG 60.183 42.308 2.29 0.00 44.68 2.77
17 18 5.883115 GCTAGCCAAGATAAAGGTCTTCTTT 59.117 40.000 2.29 0.00 46.49 2.52
18 19 5.045578 TGCTAGCCAAGATAAAGGTCTTCTT 60.046 40.000 13.29 0.00 36.33 2.52
19 20 4.471386 TGCTAGCCAAGATAAAGGTCTTCT 59.529 41.667 13.29 0.00 36.33 2.85
20 21 4.572795 GTGCTAGCCAAGATAAAGGTCTTC 59.427 45.833 13.29 0.00 36.33 2.87
21 22 4.226168 AGTGCTAGCCAAGATAAAGGTCTT 59.774 41.667 13.29 0.00 38.95 3.01
22 23 3.777522 AGTGCTAGCCAAGATAAAGGTCT 59.222 43.478 13.29 0.00 0.00 3.85
23 24 4.143986 AGTGCTAGCCAAGATAAAGGTC 57.856 45.455 13.29 0.00 0.00 3.85
24 25 5.896073 ATAGTGCTAGCCAAGATAAAGGT 57.104 39.130 13.29 0.00 0.00 3.50
25 26 7.445945 AGTAATAGTGCTAGCCAAGATAAAGG 58.554 38.462 13.29 0.00 0.00 3.11
26 27 7.600752 GGAGTAATAGTGCTAGCCAAGATAAAG 59.399 40.741 13.29 0.00 0.00 1.85
27 28 7.442656 GGAGTAATAGTGCTAGCCAAGATAAA 58.557 38.462 13.29 0.00 0.00 1.40
28 29 6.014499 GGGAGTAATAGTGCTAGCCAAGATAA 60.014 42.308 13.29 0.00 0.00 1.75
29 30 5.480772 GGGAGTAATAGTGCTAGCCAAGATA 59.519 44.000 13.29 0.00 0.00 1.98
30 31 4.284746 GGGAGTAATAGTGCTAGCCAAGAT 59.715 45.833 13.29 0.00 0.00 2.40
31 32 3.641906 GGGAGTAATAGTGCTAGCCAAGA 59.358 47.826 13.29 0.00 0.00 3.02
32 33 3.244249 GGGGAGTAATAGTGCTAGCCAAG 60.244 52.174 13.29 0.00 0.00 3.61
33 34 2.704065 GGGGAGTAATAGTGCTAGCCAA 59.296 50.000 13.29 0.00 0.00 4.52
34 35 2.326428 GGGGAGTAATAGTGCTAGCCA 58.674 52.381 13.29 0.00 0.00 4.75
35 36 2.326428 TGGGGAGTAATAGTGCTAGCC 58.674 52.381 13.29 3.49 0.00 3.93
36 37 5.740290 TTATGGGGAGTAATAGTGCTAGC 57.260 43.478 8.10 8.10 0.00 3.42
37 38 7.304497 AGTTTATGGGGAGTAATAGTGCTAG 57.696 40.000 0.00 0.00 0.00 3.42
38 39 7.685849 AAGTTTATGGGGAGTAATAGTGCTA 57.314 36.000 0.00 0.00 0.00 3.49
39 40 6.576778 AAGTTTATGGGGAGTAATAGTGCT 57.423 37.500 0.00 0.00 0.00 4.40
40 41 6.459710 GCAAAGTTTATGGGGAGTAATAGTGC 60.460 42.308 0.00 0.00 0.00 4.40
41 42 6.039382 GGCAAAGTTTATGGGGAGTAATAGTG 59.961 42.308 0.00 0.00 0.00 2.74
42 43 6.127101 GGCAAAGTTTATGGGGAGTAATAGT 58.873 40.000 0.00 0.00 0.00 2.12
43 44 6.126409 TGGCAAAGTTTATGGGGAGTAATAG 58.874 40.000 0.00 0.00 0.00 1.73
44 45 6.080969 TGGCAAAGTTTATGGGGAGTAATA 57.919 37.500 0.00 0.00 0.00 0.98
45 46 4.941713 TGGCAAAGTTTATGGGGAGTAAT 58.058 39.130 0.00 0.00 0.00 1.89
46 47 4.390129 TGGCAAAGTTTATGGGGAGTAA 57.610 40.909 0.00 0.00 0.00 2.24
47 48 4.043561 TCTTGGCAAAGTTTATGGGGAGTA 59.956 41.667 0.00 0.00 34.78 2.59
48 49 2.990740 TGGCAAAGTTTATGGGGAGT 57.009 45.000 0.00 0.00 0.00 3.85
49 50 3.430453 TCTTGGCAAAGTTTATGGGGAG 58.570 45.455 0.00 0.00 34.78 4.30
50 51 3.534357 TCTTGGCAAAGTTTATGGGGA 57.466 42.857 0.00 0.00 34.78 4.81
51 52 4.824479 AATCTTGGCAAAGTTTATGGGG 57.176 40.909 0.00 0.00 34.78 4.96
52 53 6.709846 TGAAAAATCTTGGCAAAGTTTATGGG 59.290 34.615 0.00 0.00 34.78 4.00
53 54 7.727331 TGAAAAATCTTGGCAAAGTTTATGG 57.273 32.000 0.00 0.00 34.78 2.74
54 55 9.211485 AGATGAAAAATCTTGGCAAAGTTTATG 57.789 29.630 0.00 0.00 34.78 1.90
55 56 9.211485 CAGATGAAAAATCTTGGCAAAGTTTAT 57.789 29.630 0.00 0.00 34.78 1.40
56 57 7.171337 GCAGATGAAAAATCTTGGCAAAGTTTA 59.829 33.333 0.00 0.00 34.78 2.01
57 58 6.017687 GCAGATGAAAAATCTTGGCAAAGTTT 60.018 34.615 0.00 2.57 34.78 2.66
58 59 5.467735 GCAGATGAAAAATCTTGGCAAAGTT 59.532 36.000 0.00 0.00 34.78 2.66
59 60 4.992951 GCAGATGAAAAATCTTGGCAAAGT 59.007 37.500 0.00 0.00 34.78 2.66
60 61 4.390909 GGCAGATGAAAAATCTTGGCAAAG 59.609 41.667 0.00 0.00 34.45 2.77
61 62 4.317488 GGCAGATGAAAAATCTTGGCAAA 58.683 39.130 0.00 0.00 0.00 3.68
62 63 3.614630 CGGCAGATGAAAAATCTTGGCAA 60.615 43.478 0.00 0.00 0.00 4.52
63 64 2.094597 CGGCAGATGAAAAATCTTGGCA 60.095 45.455 0.00 0.00 0.00 4.92
64 65 2.094545 ACGGCAGATGAAAAATCTTGGC 60.095 45.455 0.00 0.00 0.00 4.52
65 66 3.728864 CGACGGCAGATGAAAAATCTTGG 60.729 47.826 0.00 0.00 0.00 3.61
66 67 3.120199 ACGACGGCAGATGAAAAATCTTG 60.120 43.478 0.00 0.00 0.00 3.02
67 68 3.074412 ACGACGGCAGATGAAAAATCTT 58.926 40.909 0.00 0.00 0.00 2.40
68 69 2.416547 CACGACGGCAGATGAAAAATCT 59.583 45.455 0.00 0.00 0.00 2.40
69 70 2.159627 ACACGACGGCAGATGAAAAATC 59.840 45.455 0.00 0.00 0.00 2.17
70 71 2.151202 ACACGACGGCAGATGAAAAAT 58.849 42.857 0.00 0.00 0.00 1.82
71 72 1.588674 ACACGACGGCAGATGAAAAA 58.411 45.000 0.00 0.00 0.00 1.94
72 73 1.588674 AACACGACGGCAGATGAAAA 58.411 45.000 0.00 0.00 0.00 2.29
73 74 1.262950 CAAACACGACGGCAGATGAAA 59.737 47.619 0.00 0.00 0.00 2.69
74 75 0.865111 CAAACACGACGGCAGATGAA 59.135 50.000 0.00 0.00 0.00 2.57
75 76 0.032815 TCAAACACGACGGCAGATGA 59.967 50.000 0.00 0.00 0.00 2.92
76 77 0.439985 CTCAAACACGACGGCAGATG 59.560 55.000 0.00 0.00 0.00 2.90
77 78 0.670546 CCTCAAACACGACGGCAGAT 60.671 55.000 0.00 0.00 0.00 2.90
78 79 1.300620 CCTCAAACACGACGGCAGA 60.301 57.895 0.00 0.00 0.00 4.26
79 80 2.317609 CCCTCAAACACGACGGCAG 61.318 63.158 0.00 0.00 0.00 4.85
80 81 2.280524 CCCTCAAACACGACGGCA 60.281 61.111 0.00 0.00 0.00 5.69
81 82 3.723348 GCCCTCAAACACGACGGC 61.723 66.667 0.00 0.00 31.34 5.68
82 83 3.047877 GGCCCTCAAACACGACGG 61.048 66.667 0.00 0.00 0.00 4.79
83 84 3.047877 GGGCCCTCAAACACGACG 61.048 66.667 17.04 0.00 0.00 5.12
84 85 2.671963 GGGGCCCTCAAACACGAC 60.672 66.667 24.38 0.00 0.00 4.34
85 86 4.323477 CGGGGCCCTCAAACACGA 62.323 66.667 24.38 0.00 0.00 4.35
86 87 3.622060 ATCGGGGCCCTCAAACACG 62.622 63.158 24.38 15.22 0.00 4.49
87 88 1.749258 GATCGGGGCCCTCAAACAC 60.749 63.158 24.38 0.93 0.00 3.32
88 89 2.674754 GATCGGGGCCCTCAAACA 59.325 61.111 24.38 0.00 0.00 2.83
89 90 2.513897 CGATCGGGGCCCTCAAAC 60.514 66.667 24.38 2.70 0.00 2.93
90 91 4.483243 GCGATCGGGGCCCTCAAA 62.483 66.667 24.38 4.95 0.00 2.69
95 96 4.688966 GATCAGCGATCGGGGCCC 62.689 72.222 15.76 15.76 29.12 5.80
96 97 4.688966 GGATCAGCGATCGGGGCC 62.689 72.222 18.30 0.00 39.72 5.80
97 98 4.688966 GGGATCAGCGATCGGGGC 62.689 72.222 18.30 0.00 39.72 5.80
98 99 2.324014 TTTGGGATCAGCGATCGGGG 62.324 60.000 18.30 0.00 39.72 5.73
99 100 0.250467 ATTTGGGATCAGCGATCGGG 60.250 55.000 18.30 0.00 39.72 5.14
100 101 1.151668 GATTTGGGATCAGCGATCGG 58.848 55.000 18.30 0.48 39.72 4.18
101 102 2.160822 AGATTTGGGATCAGCGATCG 57.839 50.000 11.69 11.69 39.72 3.69
102 103 3.737850 AGAAGATTTGGGATCAGCGATC 58.262 45.455 9.24 9.24 38.25 3.69
103 104 3.390639 AGAGAAGATTTGGGATCAGCGAT 59.609 43.478 0.00 0.00 0.00 4.58
104 105 2.768527 AGAGAAGATTTGGGATCAGCGA 59.231 45.455 0.00 0.00 0.00 4.93
105 106 3.191078 AGAGAAGATTTGGGATCAGCG 57.809 47.619 0.00 0.00 0.00 5.18
106 107 4.779696 AGAAGAGAAGATTTGGGATCAGC 58.220 43.478 0.00 0.00 0.00 4.26
107 108 6.237887 AGAGAAGAGAAGATTTGGGATCAG 57.762 41.667 0.00 0.00 0.00 2.90
108 109 6.633325 AAGAGAAGAGAAGATTTGGGATCA 57.367 37.500 0.00 0.00 0.00 2.92
109 110 7.936496 AAAAGAGAAGAGAAGATTTGGGATC 57.064 36.000 0.00 0.00 0.00 3.36
135 136 5.841267 ACATATAGGATATTGTGGCCACA 57.159 39.130 34.74 34.74 39.98 4.17
136 137 6.237901 TCAACATATAGGATATTGTGGCCAC 58.762 40.000 29.67 29.67 0.00 5.01
137 138 6.446909 TCAACATATAGGATATTGTGGCCA 57.553 37.500 0.00 0.00 0.00 5.36
138 139 7.394359 ACATTCAACATATAGGATATTGTGGCC 59.606 37.037 0.00 0.00 0.00 5.36
139 140 8.340618 ACATTCAACATATAGGATATTGTGGC 57.659 34.615 0.00 0.00 0.00 5.01
152 153 9.730705 CCCATATTCTCTGTACATTCAACATAT 57.269 33.333 0.00 0.00 0.00 1.78
153 154 8.156820 CCCCATATTCTCTGTACATTCAACATA 58.843 37.037 0.00 0.00 0.00 2.29
154 155 7.000472 CCCCATATTCTCTGTACATTCAACAT 59.000 38.462 0.00 0.00 0.00 2.71
155 156 6.356556 CCCCATATTCTCTGTACATTCAACA 58.643 40.000 0.00 0.00 0.00 3.33
156 157 5.239525 GCCCCATATTCTCTGTACATTCAAC 59.760 44.000 0.00 0.00 0.00 3.18
157 158 5.132648 AGCCCCATATTCTCTGTACATTCAA 59.867 40.000 0.00 0.00 0.00 2.69
158 159 4.660303 AGCCCCATATTCTCTGTACATTCA 59.340 41.667 0.00 0.00 0.00 2.57
159 160 5.234466 AGCCCCATATTCTCTGTACATTC 57.766 43.478 0.00 0.00 0.00 2.67
160 161 6.014156 GTCTAGCCCCATATTCTCTGTACATT 60.014 42.308 0.00 0.00 0.00 2.71
161 162 5.482175 GTCTAGCCCCATATTCTCTGTACAT 59.518 44.000 0.00 0.00 0.00 2.29
162 163 4.833380 GTCTAGCCCCATATTCTCTGTACA 59.167 45.833 0.00 0.00 0.00 2.90
163 164 5.081032 AGTCTAGCCCCATATTCTCTGTAC 58.919 45.833 0.00 0.00 0.00 2.90
164 165 5.340891 AGTCTAGCCCCATATTCTCTGTA 57.659 43.478 0.00 0.00 0.00 2.74
165 166 4.206244 AGTCTAGCCCCATATTCTCTGT 57.794 45.455 0.00 0.00 0.00 3.41
166 167 6.013379 TCTTAGTCTAGCCCCATATTCTCTG 58.987 44.000 0.00 0.00 0.00 3.35
167 168 6.220881 TCTTAGTCTAGCCCCATATTCTCT 57.779 41.667 0.00 0.00 0.00 3.10
168 169 6.919775 TTCTTAGTCTAGCCCCATATTCTC 57.080 41.667 0.00 0.00 0.00 2.87
169 170 6.442244 GGATTCTTAGTCTAGCCCCATATTCT 59.558 42.308 0.00 0.00 0.00 2.40
170 171 6.352308 GGGATTCTTAGTCTAGCCCCATATTC 60.352 46.154 0.00 0.00 32.98 1.75
171 172 5.489278 GGGATTCTTAGTCTAGCCCCATATT 59.511 44.000 0.00 0.00 32.98 1.28
172 173 5.033522 GGGATTCTTAGTCTAGCCCCATAT 58.966 45.833 0.00 0.00 32.98 1.78
173 174 4.140543 TGGGATTCTTAGTCTAGCCCCATA 60.141 45.833 0.00 0.00 37.65 2.74
174 175 3.252351 GGGATTCTTAGTCTAGCCCCAT 58.748 50.000 0.00 0.00 32.98 4.00
175 176 2.022428 TGGGATTCTTAGTCTAGCCCCA 60.022 50.000 0.00 0.00 40.03 4.96
176 177 2.690840 TGGGATTCTTAGTCTAGCCCC 58.309 52.381 0.00 0.00 33.11 5.80
177 178 4.984146 AATGGGATTCTTAGTCTAGCCC 57.016 45.455 0.00 0.00 34.67 5.19
178 179 5.930135 TCAAATGGGATTCTTAGTCTAGCC 58.070 41.667 0.00 0.00 0.00 3.93
179 180 5.468409 GCTCAAATGGGATTCTTAGTCTAGC 59.532 44.000 0.00 0.00 0.00 3.42
180 181 5.694006 CGCTCAAATGGGATTCTTAGTCTAG 59.306 44.000 0.00 0.00 0.00 2.43
181 182 5.453339 CCGCTCAAATGGGATTCTTAGTCTA 60.453 44.000 0.00 0.00 0.00 2.59
182 183 4.446371 CGCTCAAATGGGATTCTTAGTCT 58.554 43.478 0.00 0.00 0.00 3.24
183 184 3.561725 CCGCTCAAATGGGATTCTTAGTC 59.438 47.826 0.00 0.00 0.00 2.59
184 185 3.545703 CCGCTCAAATGGGATTCTTAGT 58.454 45.455 0.00 0.00 0.00 2.24
185 186 2.291741 GCCGCTCAAATGGGATTCTTAG 59.708 50.000 0.00 0.00 0.00 2.18
186 187 2.297701 GCCGCTCAAATGGGATTCTTA 58.702 47.619 0.00 0.00 0.00 2.10
187 188 1.106285 GCCGCTCAAATGGGATTCTT 58.894 50.000 0.00 0.00 0.00 2.52
188 189 0.753111 GGCCGCTCAAATGGGATTCT 60.753 55.000 0.00 0.00 0.00 2.40
189 190 1.037030 TGGCCGCTCAAATGGGATTC 61.037 55.000 0.00 0.00 0.00 2.52
190 191 1.000233 TGGCCGCTCAAATGGGATT 60.000 52.632 0.00 0.00 0.00 3.01
191 192 1.754234 GTGGCCGCTCAAATGGGAT 60.754 57.895 9.68 0.00 0.00 3.85
192 193 2.361104 GTGGCCGCTCAAATGGGA 60.361 61.111 9.68 0.00 0.00 4.37
193 194 1.606885 ATTGTGGCCGCTCAAATGGG 61.607 55.000 18.96 0.00 0.00 4.00
194 195 0.179129 GATTGTGGCCGCTCAAATGG 60.179 55.000 18.96 0.00 0.00 3.16
195 196 0.813184 AGATTGTGGCCGCTCAAATG 59.187 50.000 18.96 0.00 0.00 2.32
196 197 1.474077 GAAGATTGTGGCCGCTCAAAT 59.526 47.619 18.96 9.03 0.00 2.32
197 198 0.881118 GAAGATTGTGGCCGCTCAAA 59.119 50.000 18.96 3.65 0.00 2.69
198 199 0.036732 AGAAGATTGTGGCCGCTCAA 59.963 50.000 18.96 13.57 0.00 3.02
199 200 0.391661 GAGAAGATTGTGGCCGCTCA 60.392 55.000 18.96 4.35 0.00 4.26
200 201 0.107945 AGAGAAGATTGTGGCCGCTC 60.108 55.000 18.96 7.71 0.00 5.03
201 202 0.326264 AAGAGAAGATTGTGGCCGCT 59.674 50.000 18.96 0.00 0.00 5.52
202 203 0.729690 GAAGAGAAGATTGTGGCCGC 59.270 55.000 10.11 10.11 0.00 6.53
203 204 2.275318 GAGAAGAGAAGATTGTGGCCG 58.725 52.381 0.00 0.00 0.00 6.13
204 205 2.093973 TCGAGAAGAGAAGATTGTGGCC 60.094 50.000 0.00 0.00 0.00 5.36
205 206 3.238108 TCGAGAAGAGAAGATTGTGGC 57.762 47.619 0.00 0.00 0.00 5.01
206 207 3.616379 GCTTCGAGAAGAGAAGATTGTGG 59.384 47.826 16.23 0.00 45.78 4.17
207 208 3.616379 GGCTTCGAGAAGAGAAGATTGTG 59.384 47.826 16.23 0.00 45.78 3.33
208 209 3.368948 GGGCTTCGAGAAGAGAAGATTGT 60.369 47.826 16.23 0.00 45.78 2.71
209 210 3.194062 GGGCTTCGAGAAGAGAAGATTG 58.806 50.000 16.23 0.00 45.78 2.67
210 211 2.169561 GGGGCTTCGAGAAGAGAAGATT 59.830 50.000 16.23 0.00 45.78 2.40
211 212 1.760029 GGGGCTTCGAGAAGAGAAGAT 59.240 52.381 16.23 0.00 45.78 2.40
212 213 1.187087 GGGGCTTCGAGAAGAGAAGA 58.813 55.000 16.23 0.00 45.78 2.87
213 214 0.179124 CGGGGCTTCGAGAAGAGAAG 60.179 60.000 16.23 1.94 45.69 2.85
214 215 0.898789 ACGGGGCTTCGAGAAGAGAA 60.899 55.000 16.23 0.00 40.79 2.87
215 216 1.304217 ACGGGGCTTCGAGAAGAGA 60.304 57.895 16.23 0.00 40.79 3.10
216 217 1.153745 CACGGGGCTTCGAGAAGAG 60.154 63.158 16.23 6.74 40.79 2.85
217 218 1.605451 TCACGGGGCTTCGAGAAGA 60.605 57.895 16.23 0.00 40.79 2.87
218 219 1.446272 GTCACGGGGCTTCGAGAAG 60.446 63.158 8.39 8.39 41.24 2.85
219 220 2.654877 GTCACGGGGCTTCGAGAA 59.345 61.111 7.66 0.00 32.24 2.87
220 221 3.379445 GGTCACGGGGCTTCGAGA 61.379 66.667 7.66 2.91 0.00 4.04
221 222 2.725203 TTTGGTCACGGGGCTTCGAG 62.725 60.000 7.66 0.68 0.00 4.04
222 223 2.326773 TTTTGGTCACGGGGCTTCGA 62.327 55.000 7.66 0.00 0.00 3.71
223 224 1.448922 TTTTTGGTCACGGGGCTTCG 61.449 55.000 0.00 0.00 0.00 3.79
224 225 0.966179 ATTTTTGGTCACGGGGCTTC 59.034 50.000 0.00 0.00 0.00 3.86
225 226 1.343142 GAATTTTTGGTCACGGGGCTT 59.657 47.619 0.00 0.00 0.00 4.35
226 227 0.966179 GAATTTTTGGTCACGGGGCT 59.034 50.000 0.00 0.00 0.00 5.19
227 228 0.966179 AGAATTTTTGGTCACGGGGC 59.034 50.000 0.00 0.00 0.00 5.80
228 229 1.544246 GGAGAATTTTTGGTCACGGGG 59.456 52.381 0.00 0.00 0.00 5.73
229 230 2.235016 TGGAGAATTTTTGGTCACGGG 58.765 47.619 0.00 0.00 0.00 5.28
230 231 3.317993 ACTTGGAGAATTTTTGGTCACGG 59.682 43.478 0.00 0.00 0.00 4.94
231 232 4.568152 ACTTGGAGAATTTTTGGTCACG 57.432 40.909 0.00 0.00 0.00 4.35
232 233 5.458779 CGAAACTTGGAGAATTTTTGGTCAC 59.541 40.000 0.00 0.00 0.00 3.67
233 234 5.451242 CCGAAACTTGGAGAATTTTTGGTCA 60.451 40.000 0.00 0.00 33.45 4.02
234 235 4.982295 CCGAAACTTGGAGAATTTTTGGTC 59.018 41.667 0.00 0.00 33.45 4.02
235 236 4.202212 CCCGAAACTTGGAGAATTTTTGGT 60.202 41.667 0.00 0.00 35.11 3.67
236 237 4.202212 ACCCGAAACTTGGAGAATTTTTGG 60.202 41.667 0.00 0.00 36.01 3.28
237 238 4.944048 ACCCGAAACTTGGAGAATTTTTG 58.056 39.130 0.00 0.00 0.00 2.44
238 239 5.595133 TGTACCCGAAACTTGGAGAATTTTT 59.405 36.000 0.00 0.00 0.00 1.94
239 240 5.134661 TGTACCCGAAACTTGGAGAATTTT 58.865 37.500 0.00 0.00 0.00 1.82
240 241 4.721132 TGTACCCGAAACTTGGAGAATTT 58.279 39.130 0.00 0.00 0.00 1.82
241 242 4.360951 TGTACCCGAAACTTGGAGAATT 57.639 40.909 0.00 0.00 0.00 2.17
242 243 4.569719 ATGTACCCGAAACTTGGAGAAT 57.430 40.909 0.00 0.00 0.00 2.40
243 244 5.687166 ATATGTACCCGAAACTTGGAGAA 57.313 39.130 0.00 0.00 0.00 2.87
244 245 5.424757 CAATATGTACCCGAAACTTGGAGA 58.575 41.667 0.00 0.00 0.00 3.71
245 246 4.574828 CCAATATGTACCCGAAACTTGGAG 59.425 45.833 0.00 0.00 35.08 3.86
246 247 4.519213 CCAATATGTACCCGAAACTTGGA 58.481 43.478 0.00 0.00 35.08 3.53
247 248 3.630312 CCCAATATGTACCCGAAACTTGG 59.370 47.826 0.00 0.00 33.34 3.61
248 249 4.519213 TCCCAATATGTACCCGAAACTTG 58.481 43.478 0.00 0.00 0.00 3.16
249 250 4.847990 TCCCAATATGTACCCGAAACTT 57.152 40.909 0.00 0.00 0.00 2.66
250 251 5.382664 AATCCCAATATGTACCCGAAACT 57.617 39.130 0.00 0.00 0.00 2.66
251 252 7.119262 CAGATAATCCCAATATGTACCCGAAAC 59.881 40.741 0.00 0.00 0.00 2.78
252 253 7.016760 TCAGATAATCCCAATATGTACCCGAAA 59.983 37.037 0.00 0.00 0.00 3.46
253 254 6.499000 TCAGATAATCCCAATATGTACCCGAA 59.501 38.462 0.00 0.00 0.00 4.30
254 255 6.020389 TCAGATAATCCCAATATGTACCCGA 58.980 40.000 0.00 0.00 0.00 5.14
255 256 6.294361 TCAGATAATCCCAATATGTACCCG 57.706 41.667 0.00 0.00 0.00 5.28
256 257 8.960591 CAATTCAGATAATCCCAATATGTACCC 58.039 37.037 0.00 0.00 0.00 3.69
257 258 8.462016 GCAATTCAGATAATCCCAATATGTACC 58.538 37.037 0.00 0.00 0.00 3.34
258 259 9.013229 TGCAATTCAGATAATCCCAATATGTAC 57.987 33.333 0.00 0.00 0.00 2.90
259 260 9.234827 CTGCAATTCAGATAATCCCAATATGTA 57.765 33.333 0.00 0.00 45.72 2.29
260 261 7.309621 GCTGCAATTCAGATAATCCCAATATGT 60.310 37.037 8.52 0.00 45.72 2.29
261 262 7.033791 GCTGCAATTCAGATAATCCCAATATG 58.966 38.462 8.52 0.00 45.72 1.78
262 263 6.722590 TGCTGCAATTCAGATAATCCCAATAT 59.277 34.615 0.00 0.00 45.72 1.28
263 264 6.069994 TGCTGCAATTCAGATAATCCCAATA 58.930 36.000 0.00 0.00 45.72 1.90
264 265 4.897076 TGCTGCAATTCAGATAATCCCAAT 59.103 37.500 0.00 0.00 45.72 3.16
265 266 4.279982 TGCTGCAATTCAGATAATCCCAA 58.720 39.130 0.00 0.00 45.72 4.12
266 267 3.887110 CTGCTGCAATTCAGATAATCCCA 59.113 43.478 3.02 0.00 45.72 4.37
267 268 3.305199 GCTGCTGCAATTCAGATAATCCC 60.305 47.826 11.11 0.00 45.72 3.85
268 269 3.898529 GCTGCTGCAATTCAGATAATCC 58.101 45.455 11.11 0.00 45.72 3.01
282 283 0.671796 TTGCCATATGATGCTGCTGC 59.328 50.000 8.89 8.89 40.20 5.25
283 284 3.120792 GTTTTGCCATATGATGCTGCTG 58.879 45.455 3.65 0.00 0.00 4.41
284 285 2.761767 TGTTTTGCCATATGATGCTGCT 59.238 40.909 3.65 0.00 0.00 4.24
285 286 2.861935 GTGTTTTGCCATATGATGCTGC 59.138 45.455 3.65 0.00 0.00 5.25
286 287 4.380841 AGTGTTTTGCCATATGATGCTG 57.619 40.909 3.65 0.00 0.00 4.41
287 288 4.751060 CAAGTGTTTTGCCATATGATGCT 58.249 39.130 3.65 0.00 0.00 3.79
288 289 3.307782 GCAAGTGTTTTGCCATATGATGC 59.692 43.478 3.65 0.15 39.38 3.91
289 290 4.751060 AGCAAGTGTTTTGCCATATGATG 58.249 39.130 3.65 0.00 45.98 3.07
290 291 4.463539 TGAGCAAGTGTTTTGCCATATGAT 59.536 37.500 3.65 0.00 45.98 2.45
291 292 3.825585 TGAGCAAGTGTTTTGCCATATGA 59.174 39.130 3.65 0.00 45.98 2.15
292 293 4.177165 TGAGCAAGTGTTTTGCCATATG 57.823 40.909 8.15 0.00 45.98 1.78
293 294 4.813027 CTTGAGCAAGTGTTTTGCCATAT 58.187 39.130 8.15 0.00 45.98 1.78
294 295 3.552684 GCTTGAGCAAGTGTTTTGCCATA 60.553 43.478 11.47 0.00 45.98 2.74
295 296 2.804212 GCTTGAGCAAGTGTTTTGCCAT 60.804 45.455 11.47 0.00 45.98 4.40
296 297 1.471327 GCTTGAGCAAGTGTTTTGCCA 60.471 47.619 11.47 4.13 45.98 4.92
297 298 1.211743 GCTTGAGCAAGTGTTTTGCC 58.788 50.000 11.47 1.79 45.98 4.52
309 310 0.375106 GAATGTACCGCTGCTTGAGC 59.625 55.000 0.00 0.00 45.20 4.26
310 311 1.009829 GGAATGTACCGCTGCTTGAG 58.990 55.000 0.00 0.00 0.00 3.02
311 312 0.323302 TGGAATGTACCGCTGCTTGA 59.677 50.000 0.00 0.00 0.00 3.02
312 313 1.135689 GTTGGAATGTACCGCTGCTTG 60.136 52.381 0.00 0.00 0.00 4.01
313 314 1.165270 GTTGGAATGTACCGCTGCTT 58.835 50.000 0.00 0.00 0.00 3.91
314 315 1.019278 CGTTGGAATGTACCGCTGCT 61.019 55.000 0.00 0.00 0.00 4.24
315 316 1.423845 CGTTGGAATGTACCGCTGC 59.576 57.895 0.00 0.00 0.00 5.25
316 317 1.366111 CCCGTTGGAATGTACCGCTG 61.366 60.000 0.00 0.00 0.00 5.18
317 318 1.078708 CCCGTTGGAATGTACCGCT 60.079 57.895 0.00 0.00 0.00 5.52
318 319 2.757056 GCCCGTTGGAATGTACCGC 61.757 63.158 0.00 0.00 0.00 5.68
319 320 0.746563 ATGCCCGTTGGAATGTACCG 60.747 55.000 0.00 0.00 0.00 4.02
320 321 1.470051 AATGCCCGTTGGAATGTACC 58.530 50.000 0.00 0.00 26.42 3.34
321 322 2.874849 CAAATGCCCGTTGGAATGTAC 58.125 47.619 0.00 0.00 26.42 2.90
322 323 1.203523 GCAAATGCCCGTTGGAATGTA 59.796 47.619 0.00 0.00 26.42 2.29
323 324 0.037419 GCAAATGCCCGTTGGAATGT 60.037 50.000 0.00 0.00 26.42 2.71
324 325 0.247185 AGCAAATGCCCGTTGGAATG 59.753 50.000 0.94 0.00 43.38 2.67
325 326 0.247185 CAGCAAATGCCCGTTGGAAT 59.753 50.000 0.94 0.00 43.38 3.01
326 327 0.825425 TCAGCAAATGCCCGTTGGAA 60.825 50.000 0.94 0.00 43.38 3.53
327 328 0.611618 ATCAGCAAATGCCCGTTGGA 60.612 50.000 0.94 0.00 43.38 3.53
328 329 0.247185 AATCAGCAAATGCCCGTTGG 59.753 50.000 0.94 0.00 43.38 3.77
329 330 1.067706 TGAATCAGCAAATGCCCGTTG 60.068 47.619 0.94 0.00 43.38 4.10
330 331 1.255882 TGAATCAGCAAATGCCCGTT 58.744 45.000 0.94 0.00 43.38 4.44
331 332 1.255882 TTGAATCAGCAAATGCCCGT 58.744 45.000 0.94 0.00 43.38 5.28
332 333 2.589798 ATTGAATCAGCAAATGCCCG 57.410 45.000 0.94 0.00 43.38 6.13
333 334 5.014808 ACTTATTGAATCAGCAAATGCCC 57.985 39.130 0.94 0.00 43.38 5.36
334 335 6.335777 AGAACTTATTGAATCAGCAAATGCC 58.664 36.000 0.94 0.00 43.38 4.40
335 336 7.008992 GTGAGAACTTATTGAATCAGCAAATGC 59.991 37.037 0.00 0.00 42.49 3.56
336 337 8.024865 TGTGAGAACTTATTGAATCAGCAAATG 58.975 33.333 0.00 0.00 0.00 2.32
337 338 8.025445 GTGTGAGAACTTATTGAATCAGCAAAT 58.975 33.333 0.00 0.00 0.00 2.32
338 339 7.362662 GTGTGAGAACTTATTGAATCAGCAAA 58.637 34.615 0.00 0.00 0.00 3.68
339 340 6.347644 CGTGTGAGAACTTATTGAATCAGCAA 60.348 38.462 0.00 0.00 0.00 3.91
340 341 5.120674 CGTGTGAGAACTTATTGAATCAGCA 59.879 40.000 0.00 0.00 0.00 4.41
341 342 5.348724 TCGTGTGAGAACTTATTGAATCAGC 59.651 40.000 0.00 0.00 0.00 4.26
342 343 6.587990 ACTCGTGTGAGAACTTATTGAATCAG 59.412 38.462 0.00 0.00 45.57 2.90
343 344 6.455647 ACTCGTGTGAGAACTTATTGAATCA 58.544 36.000 0.00 0.00 45.57 2.57
344 345 6.952935 ACTCGTGTGAGAACTTATTGAATC 57.047 37.500 0.00 0.00 45.57 2.52
345 346 6.929049 TCAACTCGTGTGAGAACTTATTGAAT 59.071 34.615 0.00 0.00 45.57 2.57
346 347 6.277605 TCAACTCGTGTGAGAACTTATTGAA 58.722 36.000 0.00 0.00 45.57 2.69
347 348 5.838529 TCAACTCGTGTGAGAACTTATTGA 58.161 37.500 0.00 0.00 45.57 2.57
348 349 6.201044 AGTTCAACTCGTGTGAGAACTTATTG 59.799 38.462 22.54 3.57 43.50 1.90
349 350 6.281405 AGTTCAACTCGTGTGAGAACTTATT 58.719 36.000 22.54 9.64 43.50 1.40
350 351 5.844004 AGTTCAACTCGTGTGAGAACTTAT 58.156 37.500 22.54 9.88 43.50 1.73
351 352 5.258456 AGTTCAACTCGTGTGAGAACTTA 57.742 39.130 22.54 0.00 43.50 2.24
352 353 4.113354 GAGTTCAACTCGTGTGAGAACTT 58.887 43.478 25.97 16.54 44.71 2.66
353 354 3.707793 GAGTTCAACTCGTGTGAGAACT 58.292 45.455 25.73 25.73 46.00 3.01
364 365 2.476619 CACGTGATGGTGAGTTCAACTC 59.523 50.000 10.90 10.92 45.26 3.01
365 366 2.483876 CACGTGATGGTGAGTTCAACT 58.516 47.619 10.90 0.00 40.38 3.16
366 367 1.531149 CCACGTGATGGTGAGTTCAAC 59.469 52.381 19.30 0.00 44.46 3.18
367 368 1.877637 CCACGTGATGGTGAGTTCAA 58.122 50.000 19.30 0.00 44.46 2.69
368 369 3.605013 CCACGTGATGGTGAGTTCA 57.395 52.632 19.30 0.00 44.46 3.18
377 378 1.531149 GGTTTGAGACACCACGTGATG 59.469 52.381 19.30 14.17 36.96 3.07
378 379 1.872237 CGGTTTGAGACACCACGTGAT 60.872 52.381 19.30 0.00 36.96 3.06
379 380 0.528901 CGGTTTGAGACACCACGTGA 60.529 55.000 19.30 0.00 36.96 4.35
380 381 0.528901 TCGGTTTGAGACACCACGTG 60.529 55.000 9.08 9.08 39.75 4.49
381 382 1.817881 TCGGTTTGAGACACCACGT 59.182 52.632 0.00 0.00 33.36 4.49
382 383 4.742274 TCGGTTTGAGACACCACG 57.258 55.556 0.00 0.00 33.36 4.94
408 409 2.695147 CAAAGGAGGCCTGAGTGTTTTT 59.305 45.455 12.00 0.00 32.13 1.94
409 410 2.310538 CAAAGGAGGCCTGAGTGTTTT 58.689 47.619 12.00 0.00 32.13 2.43
410 411 1.479389 CCAAAGGAGGCCTGAGTGTTT 60.479 52.381 12.00 0.00 32.13 2.83
411 412 0.111253 CCAAAGGAGGCCTGAGTGTT 59.889 55.000 12.00 0.00 32.13 3.32
412 413 1.062488 ACCAAAGGAGGCCTGAGTGT 61.062 55.000 12.00 0.00 32.13 3.55
413 414 0.111253 AACCAAAGGAGGCCTGAGTG 59.889 55.000 12.00 2.16 32.13 3.51
414 415 0.853530 AAACCAAAGGAGGCCTGAGT 59.146 50.000 12.00 0.00 32.13 3.41
415 416 1.202927 TCAAACCAAAGGAGGCCTGAG 60.203 52.381 12.00 0.00 32.13 3.35
416 417 0.850100 TCAAACCAAAGGAGGCCTGA 59.150 50.000 12.00 0.00 32.13 3.86
417 418 1.615392 CTTCAAACCAAAGGAGGCCTG 59.385 52.381 12.00 0.00 32.13 4.85
418 419 1.481242 CCTTCAAACCAAAGGAGGCCT 60.481 52.381 3.86 3.86 45.15 5.19
419 420 0.969149 CCTTCAAACCAAAGGAGGCC 59.031 55.000 0.00 0.00 45.15 5.19
420 421 1.995376 TCCTTCAAACCAAAGGAGGC 58.005 50.000 0.51 0.00 45.74 4.70
434 435 9.500785 CCTCTAGAATTCCTATGAAATTCCTTC 57.499 37.037 0.65 0.00 33.32 3.46
435 436 9.230477 TCCTCTAGAATTCCTATGAAATTCCTT 57.770 33.333 0.65 0.00 33.32 3.36
436 437 8.805145 TCCTCTAGAATTCCTATGAAATTCCT 57.195 34.615 0.65 0.00 33.32 3.36
443 444 9.707957 GAATCCTATCCTCTAGAATTCCTATGA 57.292 37.037 0.65 0.00 0.00 2.15
444 445 9.713684 AGAATCCTATCCTCTAGAATTCCTATG 57.286 37.037 0.65 0.00 0.00 2.23
447 448 9.100197 GAAAGAATCCTATCCTCTAGAATTCCT 57.900 37.037 0.65 0.00 0.00 3.36
448 449 8.318412 GGAAAGAATCCTATCCTCTAGAATTCC 58.682 40.741 0.65 0.00 45.56 3.01
465 466 5.395657 CCAAAGGGCCATAAAGGAAAGAATC 60.396 44.000 6.18 0.00 41.22 2.52
466 467 4.471025 CCAAAGGGCCATAAAGGAAAGAAT 59.529 41.667 6.18 0.00 41.22 2.40
467 468 3.837731 CCAAAGGGCCATAAAGGAAAGAA 59.162 43.478 6.18 0.00 41.22 2.52
468 469 3.181412 ACCAAAGGGCCATAAAGGAAAGA 60.181 43.478 6.18 0.00 40.02 2.52
469 470 3.173151 ACCAAAGGGCCATAAAGGAAAG 58.827 45.455 6.18 0.00 40.02 2.62
470 471 3.268034 ACCAAAGGGCCATAAAGGAAA 57.732 42.857 6.18 0.00 40.02 3.13
471 472 3.169908 GAACCAAAGGGCCATAAAGGAA 58.830 45.455 6.18 0.00 40.02 3.36
472 473 2.110899 TGAACCAAAGGGCCATAAAGGA 59.889 45.455 6.18 0.00 40.02 3.36
473 474 2.534990 TGAACCAAAGGGCCATAAAGG 58.465 47.619 6.18 2.68 37.90 3.11
474 475 4.342092 CCTATGAACCAAAGGGCCATAAAG 59.658 45.833 6.18 0.00 37.90 1.85
475 476 4.017037 TCCTATGAACCAAAGGGCCATAAA 60.017 41.667 6.18 0.00 37.90 1.40
476 477 3.529734 TCCTATGAACCAAAGGGCCATAA 59.470 43.478 6.18 0.00 37.90 1.90
477 478 3.127250 TCCTATGAACCAAAGGGCCATA 58.873 45.455 6.18 0.00 37.90 2.74
478 479 1.929494 TCCTATGAACCAAAGGGCCAT 59.071 47.619 6.18 0.00 37.90 4.40
479 480 1.377690 TCCTATGAACCAAAGGGCCA 58.622 50.000 6.18 0.00 37.90 5.36
480 481 2.525105 TTCCTATGAACCAAAGGGCC 57.475 50.000 0.00 0.00 37.90 5.80
481 482 2.695147 CCATTCCTATGAACCAAAGGGC 59.305 50.000 0.00 0.00 33.50 5.19
482 483 4.249638 TCCATTCCTATGAACCAAAGGG 57.750 45.455 0.00 0.00 35.37 3.95
483 484 6.396829 GAATCCATTCCTATGAACCAAAGG 57.603 41.667 0.00 0.00 33.37 3.11
500 501 8.605947 CCAATTCTATGTAGGAATAGGAATCCA 58.394 37.037 0.61 0.00 39.55 3.41
501 502 8.606830 ACCAATTCTATGTAGGAATAGGAATCC 58.393 37.037 0.00 0.00 37.22 3.01
504 505 8.437575 GGAACCAATTCTATGTAGGAATAGGAA 58.562 37.037 0.00 0.00 34.98 3.36
505 506 7.794683 AGGAACCAATTCTATGTAGGAATAGGA 59.205 37.037 0.00 0.00 34.98 2.94
506 507 7.978925 AGGAACCAATTCTATGTAGGAATAGG 58.021 38.462 0.00 0.00 34.98 2.57
509 510 8.606830 GGATAGGAACCAATTCTATGTAGGAAT 58.393 37.037 0.00 0.00 34.98 3.01
510 511 7.794683 AGGATAGGAACCAATTCTATGTAGGAA 59.205 37.037 0.00 0.00 34.98 3.36
511 512 7.313731 AGGATAGGAACCAATTCTATGTAGGA 58.686 38.462 0.00 0.00 34.98 2.94
512 513 7.560796 AGGATAGGAACCAATTCTATGTAGG 57.439 40.000 0.00 0.00 34.98 3.18
513 514 8.651389 TGAAGGATAGGAACCAATTCTATGTAG 58.349 37.037 0.00 0.00 34.98 2.74
514 515 8.429641 GTGAAGGATAGGAACCAATTCTATGTA 58.570 37.037 0.00 0.00 34.98 2.29
515 516 7.092444 TGTGAAGGATAGGAACCAATTCTATGT 60.092 37.037 0.00 0.00 34.98 2.29
516 517 7.282585 TGTGAAGGATAGGAACCAATTCTATG 58.717 38.462 0.00 0.00 34.98 2.23
517 518 7.451731 TGTGAAGGATAGGAACCAATTCTAT 57.548 36.000 0.00 0.00 34.98 1.98
518 519 6.884472 TGTGAAGGATAGGAACCAATTCTA 57.116 37.500 0.00 0.00 34.98 2.10
519 520 5.779241 TGTGAAGGATAGGAACCAATTCT 57.221 39.130 0.00 0.00 34.98 2.40
520 521 7.122650 TGAAATGTGAAGGATAGGAACCAATTC 59.877 37.037 0.00 0.00 0.00 2.17
521 522 6.953520 TGAAATGTGAAGGATAGGAACCAATT 59.046 34.615 0.00 0.00 0.00 2.32
522 523 6.493166 TGAAATGTGAAGGATAGGAACCAAT 58.507 36.000 0.00 0.00 0.00 3.16
523 524 5.886609 TGAAATGTGAAGGATAGGAACCAA 58.113 37.500 0.00 0.00 0.00 3.67
524 525 5.512942 TGAAATGTGAAGGATAGGAACCA 57.487 39.130 0.00 0.00 0.00 3.67
525 526 6.712547 CCTATGAAATGTGAAGGATAGGAACC 59.287 42.308 0.00 0.00 36.16 3.62
526 527 7.509546 TCCTATGAAATGTGAAGGATAGGAAC 58.490 38.462 0.00 0.00 38.86 3.62
527 528 7.690454 TCCTATGAAATGTGAAGGATAGGAA 57.310 36.000 0.00 0.00 38.86 3.36
528 529 7.690454 TTCCTATGAAATGTGAAGGATAGGA 57.310 36.000 0.00 0.00 39.66 2.94
529 530 8.752005 TTTTCCTATGAAATGTGAAGGATAGG 57.248 34.615 0.00 0.00 40.08 2.57
548 549 9.807921 TGAGTCTAGGTTCATTTTTATTTTCCT 57.192 29.630 0.00 0.00 0.00 3.36
591 592 9.705290 AAAATAAGATGTCATTTGGTTAACACC 57.295 29.630 8.10 0.00 44.56 4.16
624 625 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
625 626 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
626 627 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
627 628 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
628 629 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
629 630 9.722184 AAGATGACATGTATCTCAAATCCTATG 57.278 33.333 14.33 0.00 33.92 2.23
644 645 9.911788 AATCTTGTAGGAAATAAGATGACATGT 57.088 29.630 0.00 0.00 40.12 3.21
656 657 9.765795 CGTAGGAATAGAAATCTTGTAGGAAAT 57.234 33.333 0.00 0.00 0.00 2.17
657 658 8.974238 TCGTAGGAATAGAAATCTTGTAGGAAA 58.026 33.333 0.00 0.00 0.00 3.13
658 659 8.529424 TCGTAGGAATAGAAATCTTGTAGGAA 57.471 34.615 0.00 0.00 0.00 3.36
659 660 8.707796 ATCGTAGGAATAGAAATCTTGTAGGA 57.292 34.615 0.00 0.00 0.00 2.94
686 687 9.746457 GGCCTCTTTTAATTCATAGGATAAGAT 57.254 33.333 0.00 0.00 0.00 2.40
687 688 8.949421 AGGCCTCTTTTAATTCATAGGATAAGA 58.051 33.333 0.00 0.00 0.00 2.10
688 689 9.225436 GAGGCCTCTTTTAATTCATAGGATAAG 57.775 37.037 26.25 0.00 0.00 1.73
689 690 8.723365 TGAGGCCTCTTTTAATTCATAGGATAA 58.277 33.333 32.28 3.03 0.00 1.75
690 691 8.275187 TGAGGCCTCTTTTAATTCATAGGATA 57.725 34.615 32.28 3.38 0.00 2.59
691 692 7.154191 TGAGGCCTCTTTTAATTCATAGGAT 57.846 36.000 32.28 0.00 0.00 3.24
692 693 6.575244 TGAGGCCTCTTTTAATTCATAGGA 57.425 37.500 32.28 4.17 0.00 2.94
693 694 7.645058 TTTGAGGCCTCTTTTAATTCATAGG 57.355 36.000 32.28 0.00 0.00 2.57
694 695 8.139989 CCATTTGAGGCCTCTTTTAATTCATAG 58.860 37.037 32.28 13.37 0.00 2.23
695 696 8.010733 CCATTTGAGGCCTCTTTTAATTCATA 57.989 34.615 32.28 5.57 0.00 2.15
696 697 6.881570 CCATTTGAGGCCTCTTTTAATTCAT 58.118 36.000 32.28 7.28 0.00 2.57
697 698 6.284891 CCATTTGAGGCCTCTTTTAATTCA 57.715 37.500 32.28 7.92 0.00 2.57
731 732 1.243342 TTGGCGGAAATGGTGCAGAG 61.243 55.000 0.00 0.00 0.00 3.35
776 777 8.118893 CCATTTGAATTTAATGGCGTTCTTAG 57.881 34.615 15.98 0.00 43.87 2.18
790 795 2.833943 GACTGGGCCTCCATTTGAATTT 59.166 45.455 4.53 0.00 43.11 1.82
822 827 0.179000 CGGGAATGGTGGAGGAAGAG 59.821 60.000 0.00 0.00 0.00 2.85
825 830 2.674754 GCGGGAATGGTGGAGGAA 59.325 61.111 0.00 0.00 0.00 3.36
826 831 3.781307 CGCGGGAATGGTGGAGGA 61.781 66.667 0.00 0.00 0.00 3.71
868 873 1.559368 TTGGGTTGCCTCATTCATGG 58.441 50.000 0.00 0.00 0.00 3.66
879 884 0.320374 GGCTAGGGTTTTTGGGTTGC 59.680 55.000 0.00 0.00 0.00 4.17
902 907 3.414700 GCTTGTGAGGTGACGGCG 61.415 66.667 4.80 4.80 0.00 6.46
983 988 3.976490 ATCGGGTTGAGCGGAGGGA 62.976 63.158 0.00 0.00 0.00 4.20
984 989 3.470888 ATCGGGTTGAGCGGAGGG 61.471 66.667 0.00 0.00 0.00 4.30
985 990 2.202932 CATCGGGTTGAGCGGAGG 60.203 66.667 0.00 0.00 0.00 4.30
986 991 2.892425 GCATCGGGTTGAGCGGAG 60.892 66.667 0.00 0.00 0.00 4.63
1450 1455 2.418910 CGCCATGAGAGAGGGACGT 61.419 63.158 0.00 0.00 0.00 4.34
1671 1676 1.478916 TCATAGGTCGGCATTTCGTCA 59.521 47.619 0.00 0.00 0.00 4.35
1741 1746 4.221482 AGCTTTCTCAAATTCACCATTCCC 59.779 41.667 0.00 0.00 0.00 3.97
1814 1819 3.282021 AGCATCGCATTGTAAGTGGATT 58.718 40.909 0.00 0.00 0.00 3.01
1815 1820 2.923121 AGCATCGCATTGTAAGTGGAT 58.077 42.857 0.00 0.00 0.00 3.41
2007 2012 0.523072 CAACATCAGGAACAAGCCCG 59.477 55.000 0.00 0.00 0.00 6.13
2133 2138 8.162848 AGAGCCCCTTCAGCATTATATTATAA 57.837 34.615 0.00 0.00 0.00 0.98
2251 2256 4.422073 TCTCACATAACCCATGGATCAC 57.578 45.455 15.22 0.00 39.13 3.06
2515 2520 2.880443 ACCATTGTTTGCCATCTCACT 58.120 42.857 0.00 0.00 0.00 3.41
2517 2522 2.964464 ACAACCATTGTTTGCCATCTCA 59.036 40.909 0.00 0.00 42.22 3.27
2713 2718 6.209986 TCAAGAATTTGATTCCACAGAGCAAT 59.790 34.615 0.00 0.00 38.37 3.56
2850 2855 1.272212 ACTAAATTTGGGCGGCAGTTG 59.728 47.619 12.47 0.00 0.00 3.16
2866 2871 6.666113 TCCATGAGTGTGTTATAGGTCACTAA 59.334 38.462 0.00 0.00 40.53 2.24
3039 3044 0.242017 GTGCAAGCACCTCATCCAAC 59.758 55.000 14.01 0.00 40.79 3.77
3263 3268 1.519408 AACACTACGGTTGGCATGAC 58.481 50.000 0.00 0.00 0.00 3.06
3417 3422 7.284034 AGTGCTTCCATCCATTATTTAGTTGAG 59.716 37.037 0.00 0.00 0.00 3.02
3456 3477 6.122277 CCATCCTAAGCCTATGAAACAAGAA 58.878 40.000 0.00 0.00 0.00 2.52
3532 3553 3.719268 TGACCTGGTTACTGCATCATT 57.281 42.857 0.00 0.00 0.00 2.57
3672 3714 1.939838 GCTGTAGGAGTTTGGTGTCCG 60.940 57.143 0.00 0.00 37.97 4.79
3732 3774 4.165779 CGGATTGACATGGCTTTTGTAAC 58.834 43.478 0.00 0.00 0.00 2.50
3813 3855 7.535997 ACACTTGAAGTAAAACAGGAAAAGTC 58.464 34.615 0.00 0.00 0.00 3.01
3859 3901 7.936847 TCACCACTAAAGCTGAGAAGATAAAAA 59.063 33.333 2.97 0.00 0.00 1.94
3877 3919 8.547481 TCTTTGAACAGGATATATCACCACTA 57.453 34.615 14.60 0.00 0.00 2.74
3881 3923 7.389053 GGTCATCTTTGAACAGGATATATCACC 59.611 40.741 14.60 4.54 39.52 4.02
3991 4034 9.073475 AGGTAATACTCTGTCTTAGATGTCATC 57.927 37.037 4.52 4.52 34.21 2.92
4017 4143 3.921119 TCGACGTTTACCTTAGCAGAA 57.079 42.857 0.00 0.00 0.00 3.02
4021 4147 2.676076 TGGTTCGACGTTTACCTTAGC 58.324 47.619 13.55 0.00 33.05 3.09
4078 4207 4.753107 CAGTTTTAGTACCTGAAAAGCGGA 59.247 41.667 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.