Multiple sequence alignment - TraesCS3A01G367000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G367000 chr3A 100.000 4248 0 0 1 4248 616097563 616093316 0.000000e+00 7845.0
1 TraesCS3A01G367000 chr3A 100.000 39 0 0 4718 4756 616092846 616092808 6.600000e-09 73.1
2 TraesCS3A01G367000 chr3A 95.000 40 2 0 523 562 385533881 385533920 3.970000e-06 63.9
3 TraesCS3A01G367000 chr3A 97.059 34 1 0 523 556 562342645 562342612 1.850000e-04 58.4
4 TraesCS3A01G367000 chr3D 90.244 2173 135 42 744 2876 473612790 473610655 0.000000e+00 2767.0
5 TraesCS3A01G367000 chr3D 87.469 1205 68 29 2994 4157 473610262 473609100 0.000000e+00 1312.0
6 TraesCS3A01G367000 chr3D 86.269 721 61 22 1 697 473614528 473613822 0.000000e+00 749.0
7 TraesCS3A01G367000 chr3D 85.340 191 19 6 503 686 473613000 473612812 6.280000e-44 189.0
8 TraesCS3A01G367000 chr3D 100.000 38 0 0 4719 4756 473608945 473608908 2.370000e-08 71.3
9 TraesCS3A01G367000 chr3B 87.915 2259 186 49 653 2878 628721080 628723284 0.000000e+00 2579.0
10 TraesCS3A01G367000 chr3B 84.844 1280 89 46 2994 4247 628723681 628724881 0.000000e+00 1192.0
11 TraesCS3A01G367000 chr3B 100.000 38 0 0 4719 4756 628724965 628725002 2.370000e-08 71.3
12 TraesCS3A01G367000 chr3B 100.000 30 0 0 523 552 771760015 771759986 6.650000e-04 56.5
13 TraesCS3A01G367000 chr2B 83.333 564 61 23 2126 2668 73103488 73104039 1.540000e-134 490.0
14 TraesCS3A01G367000 chr7B 82.562 562 71 17 2125 2668 616529097 616529649 2.000000e-128 470.0
15 TraesCS3A01G367000 chr6A 86.301 73 8 2 86 158 36847867 36847797 1.420000e-10 78.7
16 TraesCS3A01G367000 chr7D 79.787 94 7 6 472 554 2035837 2035745 1.850000e-04 58.4
17 TraesCS3A01G367000 chr6D 100.000 29 0 0 524 552 470572072 470572100 2.000000e-03 54.7
18 TraesCS3A01G367000 chr1B 96.875 32 1 0 523 554 15666071 15666102 2.000000e-03 54.7
19 TraesCS3A01G367000 chr1B 96.875 32 1 0 523 554 16167932 16167901 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G367000 chr3A 616092808 616097563 4755 True 3959.050000 7845 100.000000 1 4756 2 chr3A.!!$R2 4755
1 TraesCS3A01G367000 chr3D 473608908 473614528 5620 True 1017.660000 2767 89.864400 1 4756 5 chr3D.!!$R1 4755
2 TraesCS3A01G367000 chr3B 628721080 628725002 3922 False 1280.766667 2579 90.919667 653 4756 3 chr3B.!!$F1 4103
3 TraesCS3A01G367000 chr2B 73103488 73104039 551 False 490.000000 490 83.333000 2126 2668 1 chr2B.!!$F1 542
4 TraesCS3A01G367000 chr7B 616529097 616529649 552 False 470.000000 470 82.562000 2125 2668 1 chr7B.!!$F1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
534 554 0.037882 ACTGTCACATGTGAGCTCGG 60.038 55.0 28.54 22.28 40.75 4.63 F
1356 2373 0.106708 CCGCCACCAGTATACATGCT 59.893 55.0 5.50 0.00 0.00 3.79 F
2543 3626 0.033366 TGTATGCGTGTGACAGTGCT 59.967 50.0 10.53 0.73 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 3030 0.603707 CTGGTGTAGTGTGGCACTGG 60.604 60.0 19.83 0.00 45.01 4.00 R
3055 4444 0.179145 AGTCGAACCGGCACTATTCG 60.179 55.0 15.77 15.77 42.18 3.34 R
4046 5491 0.109365 CTGTGTGTGCGAGAGAGAGG 60.109 60.0 0.00 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 9.887189 GCGCTTAGAAAAATAAATTAGCTTTTC 57.113 29.630 0.00 11.88 37.82 2.29
58 59 9.645059 AAAATAAATTAGCTTTTCCTTGAGCTC 57.355 29.630 6.82 6.82 45.68 4.09
60 61 9.686683 AATAAATTAGCTTTTCCTTGAGCTCTA 57.313 29.630 16.19 6.47 45.68 2.43
64 65 2.418280 GCTTTTCCTTGAGCTCTAGTGC 59.582 50.000 21.28 8.76 36.01 4.40
65 66 6.085041 AGCTTTTCCTTGAGCTCTAGTGCT 62.085 45.833 18.82 18.82 45.68 4.40
66 67 4.322567 CTTTTCCTTGAGCTCTAGTGCTT 58.677 43.478 19.64 4.79 44.17 3.91
67 68 5.482908 CTTTTCCTTGAGCTCTAGTGCTTA 58.517 41.667 19.64 13.44 44.17 3.09
96 97 8.602472 ATTTGTAAAGGGTGGATGCTTAATTA 57.398 30.769 0.00 0.00 0.00 1.40
109 110 7.292356 TGGATGCTTAATTAGACATCCCTCTTA 59.708 37.037 28.60 16.81 46.23 2.10
123 124 8.877864 ACATCCCTCTTATAGAGAAGATACTG 57.122 38.462 5.30 1.48 45.07 2.74
191 198 8.623903 TCACCTTGCATCATACAAGAAATTATC 58.376 33.333 0.00 0.00 45.99 1.75
208 215 9.178758 AGAAATTATCGAGCAAGGTCTAAAATT 57.821 29.630 0.00 0.00 0.00 1.82
240 247 2.625790 TGTTTGGCCAGTTCGCTAAAAT 59.374 40.909 5.11 0.00 40.34 1.82
251 258 6.984474 CCAGTTCGCTAAAATTATCTACTCCA 59.016 38.462 0.00 0.00 0.00 3.86
292 299 9.660180 AAAGGCAACAAAGTTATTACAAAAAGA 57.340 25.926 0.00 0.00 41.41 2.52
294 301 9.313118 AGGCAACAAAGTTATTACAAAAAGAAG 57.687 29.630 0.00 0.00 41.41 2.85
295 302 8.547894 GGCAACAAAGTTATTACAAAAAGAAGG 58.452 33.333 0.00 0.00 0.00 3.46
296 303 8.547894 GCAACAAAGTTATTACAAAAAGAAGGG 58.452 33.333 0.00 0.00 0.00 3.95
314 321 4.073293 AGGGCATATAGTCTTTGAACCG 57.927 45.455 0.00 0.00 0.00 4.44
348 355 8.402798 TGCTCCTTGATAAACAGTAAATTCAA 57.597 30.769 0.00 0.00 0.00 2.69
408 417 9.722056 AATATTGATGAATGTTTTAACTCGAGC 57.278 29.630 13.61 0.00 0.00 5.03
418 427 7.621832 TGTTTTAACTCGAGCATTGATTTTG 57.378 32.000 13.61 0.00 0.00 2.44
441 450 2.691409 TTTCGCTCTAACCTCCATGG 57.309 50.000 4.97 4.97 42.93 3.66
443 452 1.403814 TCGCTCTAACCTCCATGGAG 58.596 55.000 31.69 31.69 41.63 3.86
481 500 8.242053 ACAAAATTTGCAAACATTCATCACAAA 58.758 25.926 15.41 0.00 0.00 2.83
482 501 9.073368 CAAAATTTGCAAACATTCATCACAAAA 57.927 25.926 15.41 0.00 0.00 2.44
483 502 9.635520 AAAATTTGCAAACATTCATCACAAAAA 57.364 22.222 15.41 0.00 0.00 1.94
523 543 8.827177 ACTATTTTCTCGATTTTACTGTCACA 57.173 30.769 0.00 0.00 0.00 3.58
534 554 0.037882 ACTGTCACATGTGAGCTCGG 60.038 55.000 28.54 22.28 40.75 4.63
536 556 1.184970 TGTCACATGTGAGCTCGGGA 61.185 55.000 28.54 1.82 40.75 5.14
586 606 5.705609 AGGGTAACACACATGATGTTTTC 57.294 39.130 20.06 14.72 40.64 2.29
592 612 5.947228 ACACACATGATGTTTTCTCGAAT 57.053 34.783 0.00 0.00 40.64 3.34
597 617 6.016360 ACACATGATGTTTTCTCGAATGGAAA 60.016 34.615 0.00 0.00 38.98 3.13
767 1779 2.978010 GGCCACACAACCCACGAG 60.978 66.667 0.00 0.00 0.00 4.18
847 1859 3.788766 GTCGTGCATCCACCGTGC 61.789 66.667 0.00 0.00 42.81 5.34
867 1879 1.450025 GTGATCCGTTCCTCCCAAAC 58.550 55.000 0.00 0.00 0.00 2.93
912 1924 5.556355 AAAAACGTAGGCAAGCTAATACC 57.444 39.130 0.00 0.00 0.00 2.73
913 1925 3.899052 AACGTAGGCAAGCTAATACCA 57.101 42.857 0.00 0.00 0.00 3.25
914 1926 3.175109 ACGTAGGCAAGCTAATACCAC 57.825 47.619 0.00 0.00 0.00 4.16
915 1927 2.764572 ACGTAGGCAAGCTAATACCACT 59.235 45.455 0.00 0.00 0.00 4.00
920 1932 3.777522 AGGCAAGCTAATACCACTCTTCT 59.222 43.478 0.00 0.00 0.00 2.85
1121 2133 7.446106 AGGTGTGTAATGTTAGGATATCCAA 57.554 36.000 23.81 12.62 38.89 3.53
1331 2344 4.643387 ACAGCCTGGTTCGTGCCC 62.643 66.667 0.00 0.00 0.00 5.36
1356 2373 0.106708 CCGCCACCAGTATACATGCT 59.893 55.000 5.50 0.00 0.00 3.79
1357 2374 1.502231 CGCCACCAGTATACATGCTC 58.498 55.000 5.50 0.00 0.00 4.26
1358 2375 1.069204 CGCCACCAGTATACATGCTCT 59.931 52.381 5.50 0.00 0.00 4.09
1359 2376 2.487934 GCCACCAGTATACATGCTCTG 58.512 52.381 5.50 0.00 0.00 3.35
1398 2436 1.287815 CCGGTGTCACGTGAAGCTA 59.712 57.895 21.95 4.34 0.00 3.32
1422 2460 2.094234 GGTGTCTGTGCACTTTTTGGTT 60.094 45.455 19.41 0.00 39.21 3.67
1423 2461 3.584834 GTGTCTGTGCACTTTTTGGTTT 58.415 40.909 19.41 0.00 36.51 3.27
1424 2462 3.993736 GTGTCTGTGCACTTTTTGGTTTT 59.006 39.130 19.41 0.00 36.51 2.43
1425 2463 4.450757 GTGTCTGTGCACTTTTTGGTTTTT 59.549 37.500 19.41 0.00 36.51 1.94
1545 2583 3.952628 CTTCAAGGTCCGGACGGCC 62.953 68.421 27.68 15.02 34.68 6.13
1662 2700 3.880846 GCCAGCGCTTTCCATCCG 61.881 66.667 7.50 0.00 0.00 4.18
1663 2701 2.436646 CCAGCGCTTTCCATCCGT 60.437 61.111 7.50 0.00 0.00 4.69
1665 2703 1.741401 CAGCGCTTTCCATCCGTGA 60.741 57.895 7.50 0.00 0.00 4.35
1666 2704 1.448540 AGCGCTTTCCATCCGTGAG 60.449 57.895 2.64 0.00 0.00 3.51
1704 2749 1.738099 CGGTTCCTCACCTCGCTTG 60.738 63.158 0.00 0.00 44.69 4.01
1705 2750 1.371558 GGTTCCTCACCTCGCTTGT 59.628 57.895 0.00 0.00 43.29 3.16
1706 2751 0.606604 GGTTCCTCACCTCGCTTGTA 59.393 55.000 0.00 0.00 43.29 2.41
1872 2917 1.438651 TCAAAGCCCAAATCTCGACG 58.561 50.000 0.00 0.00 0.00 5.12
1921 2966 5.627780 GCCTTATGTTTTAACCGTGTTCTTG 59.372 40.000 0.00 0.00 0.00 3.02
1954 2999 0.947244 CCATTCCTGCGCCTGAATAC 59.053 55.000 17.77 0.00 30.31 1.89
1983 3030 2.448453 ACTGTAGTACTGGGCAGAGTC 58.552 52.381 22.26 0.00 33.57 3.36
2024 3071 0.319728 ACACCACTGCTAGTCTGCTG 59.680 55.000 0.00 0.00 37.79 4.41
2057 3104 2.224621 ACATGTCCACCTTCTCACCTTG 60.225 50.000 0.00 0.00 0.00 3.61
2086 3133 5.589192 ACTATAGCAGTGGAACAACGTATC 58.411 41.667 0.00 0.00 44.16 2.24
2087 3134 2.831685 AGCAGTGGAACAACGTATCA 57.168 45.000 0.00 0.00 44.16 2.15
2088 3135 2.688507 AGCAGTGGAACAACGTATCAG 58.311 47.619 0.00 0.00 44.16 2.90
2090 3137 3.257375 AGCAGTGGAACAACGTATCAGTA 59.743 43.478 0.00 0.00 44.16 2.74
2091 3138 3.367025 GCAGTGGAACAACGTATCAGTAC 59.633 47.826 0.00 0.00 44.16 2.73
2119 3172 1.672881 CATGGCGTCTTCTTGGATTCC 59.327 52.381 0.00 0.00 0.00 3.01
2127 3180 5.046529 CGTCTTCTTGGATTCCACTCATAG 58.953 45.833 4.45 0.00 30.78 2.23
2156 3209 2.512286 TCGCCAGCAGCTACATGC 60.512 61.111 0.00 0.00 46.88 4.06
2190 3243 2.179949 GCTCATTTTAGCTGGCGTTC 57.820 50.000 0.00 0.00 39.50 3.95
2241 3324 0.810031 ATGATCGGCTCGGGTTTTCG 60.810 55.000 0.00 0.00 0.00 3.46
2287 3370 2.741211 GCGTTCGACCCCCTTGAC 60.741 66.667 0.00 0.00 0.00 3.18
2290 3373 4.011517 TTCGACCCCCTTGACGGC 62.012 66.667 0.00 0.00 0.00 5.68
2299 3382 1.817099 CCTTGACGGCTCCAGCATC 60.817 63.158 0.03 0.00 44.36 3.91
2425 3508 2.642254 CCCTCGCACCACCTTCGTA 61.642 63.158 0.00 0.00 0.00 3.43
2446 3529 4.432741 GCCCTCAAGGACTGCCCC 62.433 72.222 0.00 0.00 38.24 5.80
2467 3550 2.347731 GGGACACACGAATTCCTTCTC 58.652 52.381 0.00 0.00 0.00 2.87
2481 3564 2.726832 CTTCTCCTCGACGAAGGTTT 57.273 50.000 0.00 0.00 37.69 3.27
2482 3565 3.027974 CTTCTCCTCGACGAAGGTTTT 57.972 47.619 0.00 0.00 37.69 2.43
2483 3566 3.391049 CTTCTCCTCGACGAAGGTTTTT 58.609 45.455 0.00 0.00 37.69 1.94
2489 3572 4.038402 TCCTCGACGAAGGTTTTTACTTCT 59.962 41.667 0.00 0.00 41.61 2.85
2490 3573 4.385146 CCTCGACGAAGGTTTTTACTTCTC 59.615 45.833 0.00 0.00 41.61 2.87
2494 3577 5.690857 CGACGAAGGTTTTTACTTCTCTTCT 59.309 40.000 0.00 0.00 41.61 2.85
2504 3587 9.871299 GTTTTTACTTCTCTTCTGAATCAAGTC 57.129 33.333 10.36 0.00 0.00 3.01
2505 3588 8.608844 TTTTACTTCTCTTCTGAATCAAGTCC 57.391 34.615 10.36 0.00 0.00 3.85
2509 3592 3.909995 TCTCTTCTGAATCAAGTCCCCAA 59.090 43.478 0.00 0.00 0.00 4.12
2511 3594 4.592942 TCTTCTGAATCAAGTCCCCAATG 58.407 43.478 0.00 0.00 0.00 2.82
2518 3601 2.586838 ATCAAGTCCCCAATGGAATGGA 59.413 45.455 0.00 0.00 45.02 3.41
2519 3602 3.373438 ATCAAGTCCCCAATGGAATGGAG 60.373 47.826 0.00 0.00 44.19 3.86
2531 3614 1.869767 GGAATGGAGCTTCTGTATGCG 59.130 52.381 0.00 0.00 0.00 4.73
2537 3620 1.656095 GAGCTTCTGTATGCGTGTGAC 59.344 52.381 0.00 0.00 0.00 3.67
2539 3622 1.391485 GCTTCTGTATGCGTGTGACAG 59.609 52.381 1.50 1.50 41.62 3.51
2540 3623 2.677199 CTTCTGTATGCGTGTGACAGT 58.323 47.619 7.11 0.00 41.14 3.55
2542 3625 0.439985 CTGTATGCGTGTGACAGTGC 59.560 55.000 3.03 3.03 36.62 4.40
2543 3626 0.033366 TGTATGCGTGTGACAGTGCT 59.967 50.000 10.53 0.73 0.00 4.40
2544 3627 1.271102 TGTATGCGTGTGACAGTGCTA 59.729 47.619 10.53 0.00 0.00 3.49
2547 3630 1.428448 TGCGTGTGACAGTGCTAATC 58.572 50.000 10.53 0.00 0.00 1.75
2550 3633 2.324860 CGTGTGACAGTGCTAATCGAA 58.675 47.619 0.00 0.00 0.00 3.71
2551 3634 2.342651 CGTGTGACAGTGCTAATCGAAG 59.657 50.000 0.00 0.00 0.00 3.79
2553 3636 2.299013 TGTGACAGTGCTAATCGAAGGT 59.701 45.455 0.00 0.00 0.00 3.50
2554 3637 2.924290 GTGACAGTGCTAATCGAAGGTC 59.076 50.000 0.00 0.00 0.00 3.85
2555 3638 2.826128 TGACAGTGCTAATCGAAGGTCT 59.174 45.455 0.00 0.00 0.00 3.85
2597 3681 1.589716 GGCAGCATGTCAAGGACACC 61.590 60.000 0.49 0.00 45.65 4.16
2600 3684 0.603707 AGCATGTCAAGGACACCACG 60.604 55.000 0.49 0.00 45.65 4.94
2602 3686 1.432514 CATGTCAAGGACACCACGAG 58.567 55.000 0.49 0.00 45.65 4.18
2606 3690 0.037326 TCAAGGACACCACGAGCATC 60.037 55.000 0.00 0.00 0.00 3.91
2633 3717 0.106967 GGAAGATGTTCTCCCCTGGC 60.107 60.000 2.24 0.00 32.72 4.85
2636 3720 1.302907 AGATGTTCTCCCCTGGCAAT 58.697 50.000 0.00 0.00 0.00 3.56
2637 3721 1.213926 AGATGTTCTCCCCTGGCAATC 59.786 52.381 0.00 0.00 0.00 2.67
2648 3732 2.825836 GGCAATCTGAGGGCCACG 60.826 66.667 6.18 0.00 46.92 4.94
2651 3735 1.648467 GCAATCTGAGGGCCACGTTC 61.648 60.000 6.18 0.00 0.00 3.95
2654 3738 2.227089 ATCTGAGGGCCACGTTCGAC 62.227 60.000 6.18 0.00 0.00 4.20
2675 3759 4.335416 ACAACCCTGATTATGACAAGGTG 58.665 43.478 0.00 0.00 33.13 4.00
2676 3760 3.652057 ACCCTGATTATGACAAGGTGG 57.348 47.619 0.00 0.00 31.82 4.61
2678 3762 4.108570 ACCCTGATTATGACAAGGTGGTA 58.891 43.478 0.00 0.00 31.82 3.25
2679 3763 4.080526 ACCCTGATTATGACAAGGTGGTAC 60.081 45.833 0.00 0.00 31.82 3.34
2711 3795 0.040958 GGTTGTTGCTTCTCTGCACG 60.041 55.000 0.00 0.00 43.20 5.34
2720 3804 1.996191 CTTCTCTGCACGGCTCTAAAC 59.004 52.381 0.00 0.00 0.00 2.01
2727 3811 2.232696 TGCACGGCTCTAAACTGATGTA 59.767 45.455 0.00 0.00 0.00 2.29
2747 3831 7.602644 TGATGTAGGAACAGTTGTAATCAGAAC 59.397 37.037 0.00 0.00 39.49 3.01
2755 3839 7.492352 ACAGTTGTAATCAGAACCTAACAAC 57.508 36.000 7.81 7.81 44.29 3.32
2767 3851 7.942341 TCAGAACCTAACAACTGGAAAATGTAT 59.058 33.333 0.00 0.00 0.00 2.29
2769 3853 7.393515 AGAACCTAACAACTGGAAAATGTATCC 59.606 37.037 0.00 0.00 37.48 2.59
2808 3892 7.176490 ACTACTATGTGAAGGAGAAGTACACT 58.824 38.462 0.00 0.00 31.30 3.55
2855 3939 4.442706 CCTGATGTCAACCAGGTACATAC 58.557 47.826 7.84 3.87 43.71 2.39
2866 3950 6.614694 ACCAGGTACATACATCAACAACTA 57.385 37.500 0.00 0.00 0.00 2.24
2908 3994 6.106003 ACACAAGTCATATGTTTCTCGCATA 58.894 36.000 1.90 0.00 33.91 3.14
2914 4000 7.148641 AGTCATATGTTTCTCGCATACTTAGG 58.851 38.462 1.90 0.00 32.43 2.69
2916 4002 7.652105 GTCATATGTTTCTCGCATACTTAGGAA 59.348 37.037 1.90 0.00 32.43 3.36
2918 4004 8.651588 CATATGTTTCTCGCATACTTAGGAATC 58.348 37.037 0.00 0.00 32.43 2.52
2923 4009 5.972935 TCTCGCATACTTAGGAATCACAAA 58.027 37.500 0.00 0.00 0.00 2.83
2924 4010 6.582636 TCTCGCATACTTAGGAATCACAAAT 58.417 36.000 0.00 0.00 0.00 2.32
2925 4011 6.479990 TCTCGCATACTTAGGAATCACAAATG 59.520 38.462 0.00 0.00 0.00 2.32
2926 4012 6.112734 TCGCATACTTAGGAATCACAAATGT 58.887 36.000 0.00 0.00 0.00 2.71
2927 4013 6.597672 TCGCATACTTAGGAATCACAAATGTT 59.402 34.615 0.00 0.00 0.00 2.71
2928 4014 7.766738 TCGCATACTTAGGAATCACAAATGTTA 59.233 33.333 0.00 0.00 0.00 2.41
2929 4015 8.559536 CGCATACTTAGGAATCACAAATGTTAT 58.440 33.333 0.00 0.00 0.00 1.89
2934 4020 9.739276 ACTTAGGAATCACAAATGTTATTCAGA 57.261 29.630 17.54 6.27 39.28 3.27
2936 4022 9.739276 TTAGGAATCACAAATGTTATTCAGAGT 57.261 29.630 17.54 6.18 39.28 3.24
2937 4023 8.641498 AGGAATCACAAATGTTATTCAGAGTT 57.359 30.769 17.54 1.39 39.28 3.01
2938 4024 9.082313 AGGAATCACAAATGTTATTCAGAGTTT 57.918 29.630 17.54 0.13 39.28 2.66
2939 4025 9.346725 GGAATCACAAATGTTATTCAGAGTTTC 57.653 33.333 17.54 2.46 39.28 2.78
2940 4026 9.897744 GAATCACAAATGTTATTCAGAGTTTCA 57.102 29.630 13.07 0.00 38.11 2.69
2941 4027 9.903682 AATCACAAATGTTATTCAGAGTTTCAG 57.096 29.630 0.00 0.00 0.00 3.02
2944 4030 7.805071 CACAAATGTTATTCAGAGTTTCAGACC 59.195 37.037 0.00 0.00 0.00 3.85
2946 4032 5.560722 TGTTATTCAGAGTTTCAGACCCA 57.439 39.130 0.00 0.00 0.00 4.51
2952 4038 1.203313 AGAGTTTCAGACCCAGCCCTA 60.203 52.381 0.00 0.00 0.00 3.53
2953 4039 0.984995 AGTTTCAGACCCAGCCCTAC 59.015 55.000 0.00 0.00 0.00 3.18
2959 4045 0.400594 AGACCCAGCCCTACAAACAC 59.599 55.000 0.00 0.00 0.00 3.32
2960 4046 0.608308 GACCCAGCCCTACAAACACC 60.608 60.000 0.00 0.00 0.00 4.16
2963 4049 1.244019 CCAGCCCTACAAACACCTGC 61.244 60.000 0.00 0.00 0.00 4.85
2966 4052 1.203050 AGCCCTACAAACACCTGCATT 60.203 47.619 0.00 0.00 0.00 3.56
2967 4053 1.618343 GCCCTACAAACACCTGCATTT 59.382 47.619 0.00 0.00 0.00 2.32
2972 4069 5.221342 CCCTACAAACACCTGCATTTGTAAA 60.221 40.000 18.86 5.71 45.73 2.01
2978 4075 5.789643 ACACCTGCATTTGTAAAATCACT 57.210 34.783 0.00 0.00 0.00 3.41
2984 4081 6.148150 CCTGCATTTGTAAAATCACTTGCATT 59.852 34.615 0.00 0.00 36.00 3.56
2986 4083 5.791480 GCATTTGTAAAATCACTTGCATTGC 59.209 36.000 0.46 0.46 0.00 3.56
2988 4085 7.523219 CATTTGTAAAATCACTTGCATTGCAT 58.477 30.769 12.95 0.00 38.76 3.96
2989 4086 6.469139 TTGTAAAATCACTTGCATTGCATG 57.531 33.333 19.65 19.65 38.76 4.06
3030 4419 3.955650 TGGCACTAGTTCTTCAGTACC 57.044 47.619 0.00 0.00 0.00 3.34
3033 4422 3.130693 GGCACTAGTTCTTCAGTACCGAT 59.869 47.826 0.00 0.00 0.00 4.18
3034 4423 4.352887 GCACTAGTTCTTCAGTACCGATC 58.647 47.826 0.00 0.00 0.00 3.69
3035 4424 4.589252 CACTAGTTCTTCAGTACCGATCG 58.411 47.826 8.51 8.51 0.00 3.69
3036 4425 3.626670 ACTAGTTCTTCAGTACCGATCGG 59.373 47.826 32.20 32.20 42.03 4.18
3062 4451 7.664758 TGATCTGATTGATGATCACGAATAGT 58.335 34.615 0.00 0.00 42.58 2.12
3063 4452 7.597743 TGATCTGATTGATGATCACGAATAGTG 59.402 37.037 0.00 0.00 42.58 2.74
3073 4462 0.457337 ACGAATAGTGCCGGTTCGAC 60.457 55.000 25.36 8.68 45.40 4.20
3074 4463 0.179145 CGAATAGTGCCGGTTCGACT 60.179 55.000 16.66 9.87 45.40 4.18
3077 4472 0.456221 ATAGTGCCGGTTCGACTCAG 59.544 55.000 1.90 0.00 0.00 3.35
3081 4476 2.167861 GCCGGTTCGACTCAGCATC 61.168 63.158 1.90 0.00 0.00 3.91
3087 4482 3.702478 TCGACTCAGCATCGAACAG 57.298 52.632 0.00 0.00 45.16 3.16
3088 4483 0.171231 TCGACTCAGCATCGAACAGG 59.829 55.000 0.00 0.00 45.16 4.00
3090 4485 1.078848 ACTCAGCATCGAACAGGGC 60.079 57.895 0.00 0.00 0.00 5.19
3091 4486 1.817099 CTCAGCATCGAACAGGGCC 60.817 63.158 0.00 0.00 0.00 5.80
3098 4493 0.250038 ATCGAACAGGGCCATGATCG 60.250 55.000 35.23 35.23 44.13 3.69
3112 4507 4.374399 CCATGATCGATCTGTCATGTCAA 58.626 43.478 25.02 2.17 46.43 3.18
3123 4518 5.970592 TCTGTCATGTCAATTCTACTCCTG 58.029 41.667 0.00 0.00 0.00 3.86
3125 4520 3.553511 GTCATGTCAATTCTACTCCTGCG 59.446 47.826 0.00 0.00 0.00 5.18
3143 4538 2.437359 CCTTTGGCGCCAGAGAGG 60.437 66.667 40.26 34.32 41.84 3.69
3144 4539 2.665000 CTTTGGCGCCAGAGAGGA 59.335 61.111 36.91 16.92 41.22 3.71
3145 4540 1.743252 CTTTGGCGCCAGAGAGGAC 60.743 63.158 36.91 4.21 41.22 3.85
3155 4550 2.886081 CCAGAGAGGACGACAATCTTG 58.114 52.381 0.00 0.00 41.22 3.02
3156 4551 2.417924 CCAGAGAGGACGACAATCTTGG 60.418 54.545 0.00 0.00 41.22 3.61
3168 4563 2.026822 ACAATCTTGGAGTCGAGGCAAT 60.027 45.455 0.00 0.00 0.00 3.56
3177 4572 3.751698 GGAGTCGAGGCAATGTAACTTTT 59.248 43.478 0.00 0.00 0.00 2.27
3178 4573 4.142881 GGAGTCGAGGCAATGTAACTTTTC 60.143 45.833 0.00 0.00 0.00 2.29
3179 4574 4.642429 AGTCGAGGCAATGTAACTTTTCT 58.358 39.130 0.00 0.00 0.00 2.52
3180 4575 4.452455 AGTCGAGGCAATGTAACTTTTCTG 59.548 41.667 0.00 0.00 0.00 3.02
3181 4576 4.451096 GTCGAGGCAATGTAACTTTTCTGA 59.549 41.667 0.00 0.00 0.00 3.27
3182 4577 4.690748 TCGAGGCAATGTAACTTTTCTGAG 59.309 41.667 0.00 0.00 0.00 3.35
3183 4578 4.690748 CGAGGCAATGTAACTTTTCTGAGA 59.309 41.667 0.00 0.00 0.00 3.27
3184 4579 5.179368 CGAGGCAATGTAACTTTTCTGAGAA 59.821 40.000 0.00 0.00 0.00 2.87
3185 4580 6.319141 AGGCAATGTAACTTTTCTGAGAAC 57.681 37.500 0.00 0.00 0.00 3.01
3186 4581 5.827797 AGGCAATGTAACTTTTCTGAGAACA 59.172 36.000 0.00 0.00 0.00 3.18
3187 4582 6.321181 AGGCAATGTAACTTTTCTGAGAACAA 59.679 34.615 0.00 0.00 0.00 2.83
3206 4601 0.962356 AGAATTTGGCTGGGTGCTCG 60.962 55.000 0.00 0.00 42.39 5.03
3208 4603 3.866379 ATTTGGCTGGGTGCTCGCA 62.866 57.895 5.37 5.37 42.39 5.10
3223 4618 3.360340 GCAGCTGTGAGTGCCACC 61.360 66.667 16.64 0.00 45.09 4.61
3270 4665 2.885113 TCGACCATCGAGCCTGTG 59.115 61.111 0.00 0.00 44.82 3.66
3381 4802 2.688446 CACTCCATTGCATGCAGAGATT 59.312 45.455 31.11 17.39 0.00 2.40
3385 4806 3.764972 TCCATTGCATGCAGAGATTGAAA 59.235 39.130 21.50 2.55 0.00 2.69
3392 4813 4.733887 GCATGCAGAGATTGAAATCTTTCG 59.266 41.667 14.21 1.20 45.39 3.46
3400 4821 7.215194 CAGAGATTGAAATCTTTCGTTTTAGCG 59.785 37.037 6.98 0.00 45.39 4.26
3438 4859 1.814634 GCATGCATGAGAAGAGAGGGG 60.815 57.143 30.64 0.00 0.00 4.79
3441 4863 0.908198 GCATGAGAAGAGAGGGGTGT 59.092 55.000 0.00 0.00 0.00 4.16
3461 4883 3.755905 TGTATGTTTGATGAATGGTGCGT 59.244 39.130 0.00 0.00 0.00 5.24
3462 4884 2.702898 TGTTTGATGAATGGTGCGTG 57.297 45.000 0.00 0.00 0.00 5.34
3463 4885 1.335780 TGTTTGATGAATGGTGCGTGC 60.336 47.619 0.00 0.00 0.00 5.34
3464 4886 0.957362 TTTGATGAATGGTGCGTGCA 59.043 45.000 0.00 0.00 0.00 4.57
3799 5230 2.341846 ACGCCTTTCTCAACCTGAAA 57.658 45.000 0.00 0.00 33.15 2.69
3800 5231 2.650322 ACGCCTTTCTCAACCTGAAAA 58.350 42.857 0.00 0.00 33.70 2.29
3801 5232 3.222603 ACGCCTTTCTCAACCTGAAAAT 58.777 40.909 0.00 0.00 33.70 1.82
3802 5233 3.636764 ACGCCTTTCTCAACCTGAAAATT 59.363 39.130 0.00 0.00 33.70 1.82
3803 5234 4.099419 ACGCCTTTCTCAACCTGAAAATTT 59.901 37.500 0.00 0.00 33.70 1.82
3811 5242 8.419076 TTCTCAACCTGAAAATTTAAACAAGC 57.581 30.769 0.00 0.00 0.00 4.01
3837 5272 3.738282 CCGTTATAGAGTCTGAAGCATGC 59.262 47.826 10.51 10.51 0.00 4.06
3855 5290 4.659088 CATGCTGTTGTCTTGTGATGATC 58.341 43.478 0.00 0.00 0.00 2.92
3868 5303 5.862678 TGTGATGATCCGAACTGGTAATA 57.137 39.130 0.00 0.00 39.52 0.98
3921 5364 1.739562 CTTGTCTCCACTGCGAGGC 60.740 63.158 0.00 0.00 34.95 4.70
3928 5371 2.034879 CCACTGCGAGGCGATTGTT 61.035 57.895 0.00 0.00 0.00 2.83
3942 5385 3.181546 GCGATTGTTGTACGTACACAGTC 60.182 47.826 27.36 26.33 35.64 3.51
4046 5491 4.310288 GCACCTTTGCTCCTCTCC 57.690 61.111 0.00 0.00 46.17 3.71
4053 5498 1.756538 CTTTGCTCCTCTCCCTCTCTC 59.243 57.143 0.00 0.00 0.00 3.20
4054 5499 1.006813 TTGCTCCTCTCCCTCTCTCT 58.993 55.000 0.00 0.00 0.00 3.10
4055 5500 0.550914 TGCTCCTCTCCCTCTCTCTC 59.449 60.000 0.00 0.00 0.00 3.20
4056 5501 0.535102 GCTCCTCTCCCTCTCTCTCG 60.535 65.000 0.00 0.00 0.00 4.04
4057 5502 0.535102 CTCCTCTCCCTCTCTCTCGC 60.535 65.000 0.00 0.00 0.00 5.03
4058 5503 1.225983 CCTCTCCCTCTCTCTCGCA 59.774 63.158 0.00 0.00 0.00 5.10
4059 5504 1.101049 CCTCTCCCTCTCTCTCGCAC 61.101 65.000 0.00 0.00 0.00 5.34
4060 5505 0.393673 CTCTCCCTCTCTCTCGCACA 60.394 60.000 0.00 0.00 0.00 4.57
4108 5553 2.153645 TGTTTCCACGAGCTACTACGA 58.846 47.619 0.00 0.00 0.00 3.43
4154 5599 1.004277 GTATGGGGTGCAACAGAGGAA 59.996 52.381 3.06 0.00 39.98 3.36
4157 5602 1.172812 GGGGTGCAACAGAGGAACAC 61.173 60.000 3.06 0.00 39.98 3.32
4159 5604 3.094386 GTGCAACAGAGGAACACCA 57.906 52.632 0.00 0.00 36.32 4.17
4161 5606 0.254462 TGCAACAGAGGAACACCACA 59.746 50.000 0.00 0.00 0.00 4.17
4162 5607 1.340502 TGCAACAGAGGAACACCACAA 60.341 47.619 0.00 0.00 0.00 3.33
4163 5608 1.748493 GCAACAGAGGAACACCACAAA 59.252 47.619 0.00 0.00 0.00 2.83
4164 5609 2.362077 GCAACAGAGGAACACCACAAAT 59.638 45.455 0.00 0.00 0.00 2.32
4166 5611 2.863809 ACAGAGGAACACCACAAATCC 58.136 47.619 0.00 0.00 0.00 3.01
4168 5613 2.816087 CAGAGGAACACCACAAATCCTG 59.184 50.000 0.00 0.00 42.28 3.86
4170 5615 2.814336 GAGGAACACCACAAATCCTGAC 59.186 50.000 0.00 0.00 42.28 3.51
4172 5617 1.535462 GAACACCACAAATCCTGACCG 59.465 52.381 0.00 0.00 0.00 4.79
4173 5618 0.762418 ACACCACAAATCCTGACCGA 59.238 50.000 0.00 0.00 0.00 4.69
4174 5619 1.270839 ACACCACAAATCCTGACCGAG 60.271 52.381 0.00 0.00 0.00 4.63
4175 5620 1.001974 CACCACAAATCCTGACCGAGA 59.998 52.381 0.00 0.00 0.00 4.04
4176 5621 1.697432 ACCACAAATCCTGACCGAGAA 59.303 47.619 0.00 0.00 0.00 2.87
4177 5622 2.105821 ACCACAAATCCTGACCGAGAAA 59.894 45.455 0.00 0.00 0.00 2.52
4178 5623 2.744202 CCACAAATCCTGACCGAGAAAG 59.256 50.000 0.00 0.00 0.00 2.62
4179 5624 2.160417 CACAAATCCTGACCGAGAAAGC 59.840 50.000 0.00 0.00 0.00 3.51
4180 5625 2.224523 ACAAATCCTGACCGAGAAAGCA 60.225 45.455 0.00 0.00 0.00 3.91
4181 5626 2.393271 AATCCTGACCGAGAAAGCAG 57.607 50.000 0.00 0.00 0.00 4.24
4182 5627 1.270907 ATCCTGACCGAGAAAGCAGT 58.729 50.000 0.00 0.00 0.00 4.40
4183 5628 1.048601 TCCTGACCGAGAAAGCAGTT 58.951 50.000 0.00 0.00 0.00 3.16
4184 5629 1.416401 TCCTGACCGAGAAAGCAGTTT 59.584 47.619 0.00 0.00 0.00 2.66
4185 5630 1.532868 CCTGACCGAGAAAGCAGTTTG 59.467 52.381 0.00 0.00 0.00 2.93
4190 5635 2.158957 ACCGAGAAAGCAGTTTGTCTGA 60.159 45.455 0.00 0.00 46.27 3.27
4193 5638 3.496130 CGAGAAAGCAGTTTGTCTGATGT 59.504 43.478 0.00 0.00 46.27 3.06
4201 5646 3.993081 CAGTTTGTCTGATGTCTGAGACC 59.007 47.826 10.52 0.00 46.27 3.85
4203 5648 1.177401 TGTCTGATGTCTGAGACCGG 58.823 55.000 10.52 0.00 38.28 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 8.341173 CAAATAAATAAGCACTAGAGCTCAAGG 58.659 37.037 17.77 7.74 45.89 3.61
57 58 9.969001 ACCCTTTACAAATAAATAAGCACTAGA 57.031 29.630 0.00 0.00 29.85 2.43
60 61 7.672239 TCCACCCTTTACAAATAAATAAGCACT 59.328 33.333 0.00 0.00 29.85 4.40
64 65 8.695456 AGCATCCACCCTTTACAAATAAATAAG 58.305 33.333 0.00 0.00 29.85 1.73
65 66 8.602472 AGCATCCACCCTTTACAAATAAATAA 57.398 30.769 0.00 0.00 29.85 1.40
66 67 8.602472 AAGCATCCACCCTTTACAAATAAATA 57.398 30.769 0.00 0.00 29.85 1.40
67 68 7.494922 AAGCATCCACCCTTTACAAATAAAT 57.505 32.000 0.00 0.00 29.85 1.40
96 97 8.900802 AGTATCTTCTCTATAAGAGGGATGTCT 58.099 37.037 16.24 13.03 42.54 3.41
109 110 8.540507 TTCTTAAGCACCAGTATCTTCTCTAT 57.459 34.615 0.00 0.00 0.00 1.98
161 163 7.558161 TTCTTGTATGATGCAAGGTGATTAG 57.442 36.000 20.45 0.00 42.44 1.73
208 215 7.468084 GCGAACTGGCCAAACATTATTTAGATA 60.468 37.037 7.01 0.00 0.00 1.98
240 247 9.100197 TGCCTTTGTCATATATGGAGTAGATAA 57.900 33.333 12.78 0.00 0.00 1.75
251 258 5.421693 TGTTGCCTTTGCCTTTGTCATATAT 59.578 36.000 0.00 0.00 36.33 0.86
254 261 2.961741 TGTTGCCTTTGCCTTTGTCATA 59.038 40.909 0.00 0.00 36.33 2.15
292 299 4.163458 TCGGTTCAAAGACTATATGCCCTT 59.837 41.667 0.00 0.00 0.00 3.95
294 301 4.058817 CTCGGTTCAAAGACTATATGCCC 58.941 47.826 0.00 0.00 0.00 5.36
295 302 3.495001 GCTCGGTTCAAAGACTATATGCC 59.505 47.826 0.00 0.00 0.00 4.40
296 303 4.372656 AGCTCGGTTCAAAGACTATATGC 58.627 43.478 0.00 0.00 0.00 3.14
305 312 3.201290 AGCATATGAGCTCGGTTCAAAG 58.799 45.455 9.64 0.00 42.18 2.77
424 433 1.403814 CTCCATGGAGGTTAGAGCGA 58.596 55.000 31.14 0.00 38.51 4.93
425 434 3.976339 CTCCATGGAGGTTAGAGCG 57.024 57.895 31.14 5.66 38.51 5.03
439 448 2.583024 TTGTGATGCAATGACCTCCA 57.417 45.000 0.00 0.00 24.99 3.86
441 450 5.390145 GCAAATTTTGTGATGCAATGACCTC 60.390 40.000 10.65 0.00 38.63 3.85
443 452 4.213694 TGCAAATTTTGTGATGCAATGACC 59.786 37.500 10.65 0.00 45.04 4.02
506 526 5.445142 GCTCACATGTGACAGTAAAATCGAG 60.445 44.000 24.56 10.97 35.46 4.04
517 537 1.184970 TCCCGAGCTCACATGTGACA 61.185 55.000 24.56 5.72 35.46 3.58
523 543 2.237143 TCTTTTGATCCCGAGCTCACAT 59.763 45.455 15.40 1.32 0.00 3.21
565 585 5.616866 CGAGAAAACATCATGTGTGTTACCC 60.617 44.000 15.89 10.13 38.40 3.69
567 587 6.223138 TCGAGAAAACATCATGTGTGTTAC 57.777 37.500 15.89 13.43 38.40 2.50
569 589 5.749596 TTCGAGAAAACATCATGTGTGTT 57.250 34.783 11.64 11.64 41.02 3.32
586 606 3.138304 TCAGTGGTGTTTTCCATTCGAG 58.862 45.455 0.00 0.00 39.81 4.04
592 612 7.070571 AGGATTAAATTTCAGTGGTGTTTTCCA 59.929 33.333 0.00 0.00 34.85 3.53
597 617 5.768164 ACGAGGATTAAATTTCAGTGGTGTT 59.232 36.000 0.00 0.00 0.00 3.32
648 668 2.625823 CCCGTGGCAACTTGCGAAT 61.626 57.895 7.67 0.00 46.21 3.34
649 669 3.283684 CCCGTGGCAACTTGCGAA 61.284 61.111 7.67 0.00 46.21 4.70
741 1753 4.584518 TGTGTGGCCCTGCTGGTG 62.585 66.667 9.00 1.52 36.04 4.17
742 1754 3.819652 TTGTGTGGCCCTGCTGGT 61.820 61.111 9.00 0.00 36.04 4.00
894 1906 2.764572 AGTGGTATTAGCTTGCCTACGT 59.235 45.455 0.00 0.00 0.00 3.57
895 1907 3.068307 AGAGTGGTATTAGCTTGCCTACG 59.932 47.826 0.00 0.00 0.00 3.51
896 1908 4.674281 AGAGTGGTATTAGCTTGCCTAC 57.326 45.455 0.00 0.00 0.00 3.18
897 1909 4.962995 AGAAGAGTGGTATTAGCTTGCCTA 59.037 41.667 0.00 0.00 0.00 3.93
898 1910 3.777522 AGAAGAGTGGTATTAGCTTGCCT 59.222 43.478 0.00 0.00 0.00 4.75
899 1911 3.873952 CAGAAGAGTGGTATTAGCTTGCC 59.126 47.826 0.00 0.00 0.00 4.52
900 1912 4.759782 TCAGAAGAGTGGTATTAGCTTGC 58.240 43.478 0.00 0.00 0.00 4.01
903 1915 7.430760 AGATTTCAGAAGAGTGGTATTAGCT 57.569 36.000 0.00 0.00 0.00 3.32
904 1916 9.601217 TTAAGATTTCAGAAGAGTGGTATTAGC 57.399 33.333 0.00 0.00 0.00 3.09
906 1918 9.601217 GCTTAAGATTTCAGAAGAGTGGTATTA 57.399 33.333 6.67 0.00 0.00 0.98
907 1919 8.325046 AGCTTAAGATTTCAGAAGAGTGGTATT 58.675 33.333 6.67 0.00 0.00 1.89
908 1920 7.856415 AGCTTAAGATTTCAGAAGAGTGGTAT 58.144 34.615 6.67 0.00 0.00 2.73
909 1921 7.246171 AGCTTAAGATTTCAGAAGAGTGGTA 57.754 36.000 6.67 0.00 0.00 3.25
910 1922 6.120507 AGCTTAAGATTTCAGAAGAGTGGT 57.879 37.500 6.67 0.00 0.00 4.16
911 1923 5.584251 GGAGCTTAAGATTTCAGAAGAGTGG 59.416 44.000 6.67 0.00 0.00 4.00
912 1924 5.290643 CGGAGCTTAAGATTTCAGAAGAGTG 59.709 44.000 6.67 0.00 0.00 3.51
913 1925 5.046950 ACGGAGCTTAAGATTTCAGAAGAGT 60.047 40.000 6.67 0.00 0.00 3.24
914 1926 5.415221 ACGGAGCTTAAGATTTCAGAAGAG 58.585 41.667 6.67 0.00 0.00 2.85
915 1927 5.407407 ACGGAGCTTAAGATTTCAGAAGA 57.593 39.130 6.67 0.00 0.00 2.87
987 1999 2.361992 TCCATTGCTGCTGGCTGG 60.362 61.111 0.00 2.80 42.39 4.85
988 2000 1.378119 TCTCCATTGCTGCTGGCTG 60.378 57.895 0.00 0.00 42.39 4.85
989 2001 1.378250 GTCTCCATTGCTGCTGGCT 60.378 57.895 0.00 0.00 42.39 4.75
990 2002 2.413142 GGTCTCCATTGCTGCTGGC 61.413 63.158 0.00 0.00 42.22 4.85
1121 2133 0.884704 GTTGACGCCTCACCACATGT 60.885 55.000 0.00 0.00 0.00 3.21
1331 2344 1.966901 TATACTGGTGGCGGGTGCAG 61.967 60.000 0.00 0.00 45.35 4.41
1339 2352 2.487934 CAGAGCATGTATACTGGTGGC 58.512 52.381 4.17 1.15 0.00 5.01
1340 2353 3.117491 CCAGAGCATGTATACTGGTGG 57.883 52.381 15.88 1.60 43.16 4.61
1356 2373 1.379977 CGCAGGGGACTAGACCAGA 60.380 63.158 13.36 0.00 40.21 3.86
1357 2374 3.082579 GCGCAGGGGACTAGACCAG 62.083 68.421 13.36 3.74 40.21 4.00
1358 2375 3.075005 GCGCAGGGGACTAGACCA 61.075 66.667 13.36 0.00 40.21 4.02
1359 2376 4.208686 CGCGCAGGGGACTAGACC 62.209 72.222 8.75 2.23 40.21 3.85
1398 2436 1.459450 AAAAGTGCACAGACACCGTT 58.541 45.000 21.04 0.00 41.67 4.44
1433 2471 2.788191 GAACTCCTCCTGCCACCACG 62.788 65.000 0.00 0.00 0.00 4.94
1662 2700 3.106407 GACGAGGCGTGCACTCAC 61.106 66.667 16.19 4.71 41.37 3.51
1663 2701 4.357947 GGACGAGGCGTGCACTCA 62.358 66.667 16.19 0.00 46.80 3.41
1704 2749 5.661458 ACTCCAACGCCTGCATATATATAC 58.339 41.667 0.00 0.00 0.00 1.47
1705 2750 5.932619 ACTCCAACGCCTGCATATATATA 57.067 39.130 0.00 0.00 0.00 0.86
1706 2751 4.826274 ACTCCAACGCCTGCATATATAT 57.174 40.909 0.00 0.00 0.00 0.86
1738 2783 2.022129 AGAGCACGCGTACTTGCAC 61.022 57.895 13.44 10.31 43.23 4.57
1806 2851 7.657354 GTGACAAGATGGATATGCAGTTATGTA 59.343 37.037 2.55 0.00 0.00 2.29
1872 2917 3.700038 TCGTCTTCCTCCTTAACCATCTC 59.300 47.826 0.00 0.00 0.00 2.75
1944 2989 4.202121 ACAGTACCACTATGTATTCAGGCG 60.202 45.833 0.00 0.00 0.00 5.52
1976 3023 1.963338 GTGTGGCACTGGACTCTGC 60.963 63.158 19.83 0.00 0.00 4.26
1983 3030 0.603707 CTGGTGTAGTGTGGCACTGG 60.604 60.000 19.83 0.00 45.01 4.00
2024 3071 3.115554 GTGGACATGTGTTTTGTTCAGC 58.884 45.455 1.15 0.00 33.29 4.26
2104 3157 3.319137 TGAGTGGAATCCAAGAAGACG 57.681 47.619 2.31 0.00 34.18 4.18
2119 3172 3.491619 CGAGTGGATGGTTCCTATGAGTG 60.492 52.174 0.00 0.00 43.07 3.51
2127 3180 1.450312 CTGGCGAGTGGATGGTTCC 60.450 63.158 0.00 0.00 42.94 3.62
2141 3194 1.748122 AGTGCATGTAGCTGCTGGC 60.748 57.895 13.43 11.01 45.94 4.85
2190 3243 2.919229 GCCAAAATTTCTGCATCTCGTG 59.081 45.455 6.94 0.00 0.00 4.35
2222 3305 0.810031 CGAAAACCCGAGCCGATCAT 60.810 55.000 0.00 0.00 0.00 2.45
2287 3370 4.147449 TCCACGATGCTGGAGCCG 62.147 66.667 0.00 0.00 41.18 5.52
2290 3373 1.448540 GGTGTCCACGATGCTGGAG 60.449 63.158 0.00 0.00 41.23 3.86
2299 3382 1.495584 CGGTGAAGTTGGTGTCCACG 61.496 60.000 0.00 0.00 30.78 4.94
2419 3502 1.275291 TCCTTGAGGGCAACTACGAAG 59.725 52.381 0.00 0.00 35.41 3.79
2425 3508 1.073897 GCAGTCCTTGAGGGCAACT 59.926 57.895 4.21 0.00 43.78 3.16
2446 3529 1.076332 GAAGGAATTCGTGTGTCCCG 58.924 55.000 0.58 0.00 31.25 5.14
2467 3550 4.304939 AGAAGTAAAAACCTTCGTCGAGG 58.695 43.478 0.00 0.00 42.48 4.63
2481 3564 7.162082 GGGACTTGATTCAGAAGAGAAGTAAA 58.838 38.462 4.84 0.00 0.00 2.01
2482 3565 6.295916 GGGGACTTGATTCAGAAGAGAAGTAA 60.296 42.308 4.84 0.00 0.00 2.24
2483 3566 5.187967 GGGGACTTGATTCAGAAGAGAAGTA 59.812 44.000 4.84 0.00 0.00 2.24
2489 3572 4.568380 CCATTGGGGACTTGATTCAGAAGA 60.568 45.833 0.00 0.00 40.01 2.87
2490 3573 3.698040 CCATTGGGGACTTGATTCAGAAG 59.302 47.826 0.00 0.00 40.01 2.85
2504 3587 1.063417 AGAAGCTCCATTCCATTGGGG 60.063 52.381 2.09 0.00 40.51 4.96
2505 3588 2.029623 CAGAAGCTCCATTCCATTGGG 58.970 52.381 2.09 0.00 37.37 4.12
2509 3592 3.484407 GCATACAGAAGCTCCATTCCAT 58.516 45.455 0.00 0.00 0.00 3.41
2511 3594 1.869767 CGCATACAGAAGCTCCATTCC 59.130 52.381 0.00 0.00 0.00 3.01
2515 3598 0.608130 ACACGCATACAGAAGCTCCA 59.392 50.000 0.00 0.00 0.00 3.86
2516 3599 1.002366 CACACGCATACAGAAGCTCC 58.998 55.000 0.00 0.00 0.00 4.70
2517 3600 1.656095 GTCACACGCATACAGAAGCTC 59.344 52.381 0.00 0.00 0.00 4.09
2518 3601 1.000843 TGTCACACGCATACAGAAGCT 59.999 47.619 0.00 0.00 0.00 3.74
2519 3602 1.391485 CTGTCACACGCATACAGAAGC 59.609 52.381 0.00 0.00 42.59 3.86
2520 3603 2.409715 CACTGTCACACGCATACAGAAG 59.590 50.000 12.89 3.83 42.59 2.85
2531 3614 2.668457 CCTTCGATTAGCACTGTCACAC 59.332 50.000 0.00 0.00 0.00 3.82
2537 3620 4.640789 AGTAGACCTTCGATTAGCACTG 57.359 45.455 0.00 0.00 0.00 3.66
2539 3622 5.496133 TGTAGTAGACCTTCGATTAGCAC 57.504 43.478 0.00 0.00 0.00 4.40
2540 3623 6.519679 TTTGTAGTAGACCTTCGATTAGCA 57.480 37.500 0.00 0.00 0.00 3.49
2542 3625 7.168302 CAGCATTTGTAGTAGACCTTCGATTAG 59.832 40.741 0.00 0.00 0.00 1.73
2543 3626 6.978659 CAGCATTTGTAGTAGACCTTCGATTA 59.021 38.462 0.00 0.00 0.00 1.75
2544 3627 5.812642 CAGCATTTGTAGTAGACCTTCGATT 59.187 40.000 0.00 0.00 0.00 3.34
2547 3630 3.307242 GCAGCATTTGTAGTAGACCTTCG 59.693 47.826 0.00 0.00 0.00 3.79
2550 3633 3.369892 CCTGCAGCATTTGTAGTAGACCT 60.370 47.826 8.66 0.00 37.78 3.85
2551 3634 2.939103 CCTGCAGCATTTGTAGTAGACC 59.061 50.000 8.66 0.00 37.78 3.85
2553 3636 3.981071 ACCTGCAGCATTTGTAGTAGA 57.019 42.857 8.66 0.00 37.78 2.59
2554 3637 6.458751 CCATTTACCTGCAGCATTTGTAGTAG 60.459 42.308 8.66 0.00 37.78 2.57
2555 3638 5.356751 CCATTTACCTGCAGCATTTGTAGTA 59.643 40.000 8.66 0.00 37.78 1.82
2597 3681 1.227089 CCCTTCTCCGATGCTCGTG 60.227 63.158 5.15 0.00 38.40 4.35
2600 3684 1.115467 TCTTCCCTTCTCCGATGCTC 58.885 55.000 0.00 0.00 0.00 4.26
2602 3686 1.139853 ACATCTTCCCTTCTCCGATGC 59.860 52.381 0.00 0.00 35.96 3.91
2606 3690 2.159028 GGAGAACATCTTCCCTTCTCCG 60.159 54.545 9.36 0.00 46.33 4.63
2633 3717 1.361668 CGAACGTGGCCCTCAGATTG 61.362 60.000 0.00 0.00 0.00 2.67
2636 3720 2.599281 TCGAACGTGGCCCTCAGA 60.599 61.111 0.00 0.00 0.00 3.27
2637 3721 2.432628 GTCGAACGTGGCCCTCAG 60.433 66.667 0.00 0.00 0.00 3.35
2648 3732 4.250464 TGTCATAATCAGGGTTGTCGAAC 58.750 43.478 0.00 0.00 0.00 3.95
2651 3735 3.623060 CCTTGTCATAATCAGGGTTGTCG 59.377 47.826 0.00 0.00 0.00 4.35
2654 3738 3.696051 CCACCTTGTCATAATCAGGGTTG 59.304 47.826 0.00 0.00 42.05 3.77
2675 3759 4.201657 ACAACCAAACAGTAACTGGTACC 58.798 43.478 4.43 4.43 42.72 3.34
2676 3760 5.575019 CAACAACCAAACAGTAACTGGTAC 58.425 41.667 0.00 0.00 42.72 3.34
2678 3762 3.119280 GCAACAACCAAACAGTAACTGGT 60.119 43.478 0.00 0.00 45.50 4.00
2679 3763 3.130340 AGCAACAACCAAACAGTAACTGG 59.870 43.478 0.00 0.00 35.51 4.00
2711 3795 5.086104 TGTTCCTACATCAGTTTAGAGCC 57.914 43.478 0.00 0.00 0.00 4.70
2720 3804 7.323420 TCTGATTACAACTGTTCCTACATCAG 58.677 38.462 13.44 13.44 34.80 2.90
2727 3811 5.568620 AGGTTCTGATTACAACTGTTCCT 57.431 39.130 0.00 0.00 0.00 3.36
2737 3821 7.739498 TTTCCAGTTGTTAGGTTCTGATTAC 57.261 36.000 0.00 0.00 0.00 1.89
2747 3831 6.659242 ACAGGATACATTTTCCAGTTGTTAGG 59.341 38.462 0.00 0.00 41.41 2.69
2755 3839 4.521146 AGCTGACAGGATACATTTTCCAG 58.479 43.478 4.26 0.00 41.41 3.86
2767 3851 2.965831 AGTAGTTGACAAGCTGACAGGA 59.034 45.455 4.26 0.00 0.00 3.86
2769 3853 5.347093 CACATAGTAGTTGACAAGCTGACAG 59.653 44.000 0.00 0.00 0.00 3.51
2808 3892 1.180456 TTCCTCCGGTGTAACGCAGA 61.180 55.000 0.00 0.00 38.12 4.26
2826 3910 1.710244 TGGTTGACATCAGGGACCATT 59.290 47.619 0.63 0.00 35.58 3.16
2878 3964 9.265938 CGAGAAACATATGACTTGTGTAAATTG 57.734 33.333 10.38 0.00 0.00 2.32
2879 3965 7.962918 GCGAGAAACATATGACTTGTGTAAATT 59.037 33.333 10.38 0.00 0.00 1.82
2881 3967 6.425417 TGCGAGAAACATATGACTTGTGTAAA 59.575 34.615 10.38 0.00 0.00 2.01
2883 3969 5.474825 TGCGAGAAACATATGACTTGTGTA 58.525 37.500 10.38 0.00 0.00 2.90
2884 3970 4.314961 TGCGAGAAACATATGACTTGTGT 58.685 39.130 10.38 0.00 0.00 3.72
2885 3971 4.926860 TGCGAGAAACATATGACTTGTG 57.073 40.909 10.38 0.00 0.00 3.33
2886 3972 6.341316 AGTATGCGAGAAACATATGACTTGT 58.659 36.000 10.38 0.70 32.87 3.16
2887 3973 6.834959 AGTATGCGAGAAACATATGACTTG 57.165 37.500 10.38 10.20 32.87 3.16
2888 3974 7.653713 CCTAAGTATGCGAGAAACATATGACTT 59.346 37.037 10.38 6.99 32.87 3.01
2889 3975 7.014326 TCCTAAGTATGCGAGAAACATATGACT 59.986 37.037 10.38 5.68 32.87 3.41
2890 3976 7.145985 TCCTAAGTATGCGAGAAACATATGAC 58.854 38.462 10.38 0.64 32.87 3.06
2891 3977 7.284919 TCCTAAGTATGCGAGAAACATATGA 57.715 36.000 10.38 0.00 32.87 2.15
2895 3981 6.480320 GTGATTCCTAAGTATGCGAGAAACAT 59.520 38.462 0.00 0.00 0.00 2.71
2896 3982 5.810587 GTGATTCCTAAGTATGCGAGAAACA 59.189 40.000 0.00 0.00 0.00 2.83
2897 3983 5.810587 TGTGATTCCTAAGTATGCGAGAAAC 59.189 40.000 0.00 0.00 0.00 2.78
2900 3986 5.592104 TTGTGATTCCTAAGTATGCGAGA 57.408 39.130 0.00 0.00 0.00 4.04
2908 3994 9.739276 TCTGAATAACATTTGTGATTCCTAAGT 57.261 29.630 15.22 0.00 42.62 2.24
2914 4000 9.897744 TGAAACTCTGAATAACATTTGTGATTC 57.102 29.630 12.18 12.18 43.26 2.52
2916 4002 9.288576 TCTGAAACTCTGAATAACATTTGTGAT 57.711 29.630 0.00 0.00 0.00 3.06
2918 4004 7.805071 GGTCTGAAACTCTGAATAACATTTGTG 59.195 37.037 0.00 0.00 0.00 3.33
2923 4009 6.126863 TGGGTCTGAAACTCTGAATAACAT 57.873 37.500 0.00 0.00 0.00 2.71
2924 4010 5.551233 CTGGGTCTGAAACTCTGAATAACA 58.449 41.667 0.00 0.00 28.96 2.41
2925 4011 4.393371 GCTGGGTCTGAAACTCTGAATAAC 59.607 45.833 0.00 0.00 28.96 1.89
2926 4012 4.565652 GGCTGGGTCTGAAACTCTGAATAA 60.566 45.833 0.00 0.00 28.96 1.40
2927 4013 3.055094 GGCTGGGTCTGAAACTCTGAATA 60.055 47.826 0.00 0.00 28.96 1.75
2928 4014 2.290577 GGCTGGGTCTGAAACTCTGAAT 60.291 50.000 0.00 0.00 28.96 2.57
2929 4015 1.072331 GGCTGGGTCTGAAACTCTGAA 59.928 52.381 0.00 0.00 28.96 3.02
2930 4016 0.687354 GGCTGGGTCTGAAACTCTGA 59.313 55.000 0.00 0.00 28.96 3.27
2931 4017 0.322008 GGGCTGGGTCTGAAACTCTG 60.322 60.000 0.00 0.00 0.00 3.35
2932 4018 0.474660 AGGGCTGGGTCTGAAACTCT 60.475 55.000 0.00 0.00 0.00 3.24
2933 4019 1.066071 GTAGGGCTGGGTCTGAAACTC 60.066 57.143 0.00 0.00 0.00 3.01
2934 4020 0.984995 GTAGGGCTGGGTCTGAAACT 59.015 55.000 0.00 0.00 0.00 2.66
2935 4021 0.690762 TGTAGGGCTGGGTCTGAAAC 59.309 55.000 0.00 0.00 0.00 2.78
2936 4022 1.440618 TTGTAGGGCTGGGTCTGAAA 58.559 50.000 0.00 0.00 0.00 2.69
2937 4023 1.073284 GTTTGTAGGGCTGGGTCTGAA 59.927 52.381 0.00 0.00 0.00 3.02
2938 4024 0.690762 GTTTGTAGGGCTGGGTCTGA 59.309 55.000 0.00 0.00 0.00 3.27
2939 4025 0.400213 TGTTTGTAGGGCTGGGTCTG 59.600 55.000 0.00 0.00 0.00 3.51
2940 4026 0.400594 GTGTTTGTAGGGCTGGGTCT 59.599 55.000 0.00 0.00 0.00 3.85
2941 4027 0.608308 GGTGTTTGTAGGGCTGGGTC 60.608 60.000 0.00 0.00 0.00 4.46
2944 4030 1.244019 GCAGGTGTTTGTAGGGCTGG 61.244 60.000 0.00 0.00 0.00 4.85
2946 4032 0.405585 ATGCAGGTGTTTGTAGGGCT 59.594 50.000 0.00 0.00 0.00 5.19
2952 4038 6.257630 GTGATTTTACAAATGCAGGTGTTTGT 59.742 34.615 17.56 17.56 46.74 2.83
2953 4039 6.479660 AGTGATTTTACAAATGCAGGTGTTTG 59.520 34.615 10.06 9.29 40.29 2.93
2959 4045 4.989797 TGCAAGTGATTTTACAAATGCAGG 59.010 37.500 0.00 0.00 38.09 4.85
2960 4046 6.715344 ATGCAAGTGATTTTACAAATGCAG 57.285 33.333 0.00 0.00 42.40 4.41
2963 4049 6.889494 TGCAATGCAAGTGATTTTACAAATG 58.111 32.000 5.01 0.00 34.76 2.32
2966 4052 6.469139 CATGCAATGCAAGTGATTTTACAA 57.531 33.333 13.45 0.00 43.62 2.41
2989 4086 0.803380 GGCATTTCATTGCTCCACGC 60.803 55.000 0.00 0.00 42.38 5.34
2991 4088 2.546778 CATGGCATTTCATTGCTCCAC 58.453 47.619 0.00 0.00 42.38 4.02
2992 4089 1.483004 CCATGGCATTTCATTGCTCCA 59.517 47.619 0.00 0.00 42.38 3.86
3012 4401 3.844577 TCGGTACTGAAGAACTAGTGC 57.155 47.619 0.63 0.00 0.00 4.40
3015 4404 4.212213 CCGATCGGTACTGAAGAACTAG 57.788 50.000 26.35 0.00 0.00 2.57
3030 4419 3.905784 TCATCAATCAGATCACCGATCG 58.094 45.455 8.51 8.51 43.17 3.69
3033 4422 4.942761 TGATCATCAATCAGATCACCGA 57.057 40.909 0.00 0.00 44.04 4.69
3037 4426 7.597743 CACTATTCGTGATCATCAATCAGATCA 59.402 37.037 0.00 0.00 45.06 2.92
3038 4427 7.411696 GCACTATTCGTGATCATCAATCAGATC 60.412 40.741 0.00 0.00 45.06 2.75
3043 4432 4.143242 CGGCACTATTCGTGATCATCAATC 60.143 45.833 0.00 0.00 46.81 2.67
3046 4435 2.545742 CCGGCACTATTCGTGATCATCA 60.546 50.000 0.00 0.00 46.81 3.07
3055 4444 0.179145 AGTCGAACCGGCACTATTCG 60.179 55.000 15.77 15.77 42.18 3.34
3057 4446 0.892755 TGAGTCGAACCGGCACTATT 59.107 50.000 0.00 0.00 32.13 1.73
3058 4447 0.456221 CTGAGTCGAACCGGCACTAT 59.544 55.000 0.00 0.00 32.13 2.12
3062 4451 3.611674 TGCTGAGTCGAACCGGCA 61.612 61.111 15.34 15.34 41.84 5.69
3063 4452 2.125512 ATGCTGAGTCGAACCGGC 60.126 61.111 0.00 11.06 35.34 6.13
3071 4460 1.086634 GCCCTGTTCGATGCTGAGTC 61.087 60.000 0.00 0.00 0.00 3.36
3073 4462 1.817099 GGCCCTGTTCGATGCTGAG 60.817 63.158 0.00 0.00 0.00 3.35
3074 4463 1.913951 ATGGCCCTGTTCGATGCTGA 61.914 55.000 0.00 0.00 0.00 4.26
3077 4472 0.820891 ATCATGGCCCTGTTCGATGC 60.821 55.000 7.98 0.00 0.00 3.91
3081 4476 0.250038 ATCGATCATGGCCCTGTTCG 60.250 55.000 26.40 26.40 38.88 3.95
3087 4482 0.394192 TGACAGATCGATCATGGCCC 59.606 55.000 26.47 14.29 0.00 5.80
3088 4483 2.074576 CATGACAGATCGATCATGGCC 58.925 52.381 26.47 16.20 45.62 5.36
3098 4493 6.700960 CAGGAGTAGAATTGACATGACAGATC 59.299 42.308 0.00 1.94 0.00 2.75
3112 4507 1.407437 CCAAAGGCGCAGGAGTAGAAT 60.407 52.381 10.83 0.00 0.00 2.40
3125 4520 3.130160 CTCTCTGGCGCCAAAGGC 61.130 66.667 32.09 0.31 46.75 4.35
3134 4529 0.820871 AGATTGTCGTCCTCTCTGGC 59.179 55.000 0.00 0.00 35.26 4.85
3135 4530 2.417924 CCAAGATTGTCGTCCTCTCTGG 60.418 54.545 0.00 0.00 37.10 3.86
3137 4532 2.757868 CTCCAAGATTGTCGTCCTCTCT 59.242 50.000 0.00 0.00 0.00 3.10
3138 4533 2.494073 ACTCCAAGATTGTCGTCCTCTC 59.506 50.000 0.00 0.00 0.00 3.20
3155 4550 2.674796 AGTTACATTGCCTCGACTCC 57.325 50.000 0.00 0.00 0.00 3.85
3156 4551 4.691216 AGAAAAGTTACATTGCCTCGACTC 59.309 41.667 0.00 0.00 0.00 3.36
3168 4563 9.787532 CAAATTCTTGTTCTCAGAAAAGTTACA 57.212 29.630 0.00 0.00 0.00 2.41
3177 4572 3.822735 CCAGCCAAATTCTTGTTCTCAGA 59.177 43.478 0.00 0.00 0.00 3.27
3178 4573 3.057033 CCCAGCCAAATTCTTGTTCTCAG 60.057 47.826 0.00 0.00 0.00 3.35
3179 4574 2.892852 CCCAGCCAAATTCTTGTTCTCA 59.107 45.455 0.00 0.00 0.00 3.27
3180 4575 2.893489 ACCCAGCCAAATTCTTGTTCTC 59.107 45.455 0.00 0.00 0.00 2.87
3181 4576 2.629617 CACCCAGCCAAATTCTTGTTCT 59.370 45.455 0.00 0.00 0.00 3.01
3182 4577 2.867647 GCACCCAGCCAAATTCTTGTTC 60.868 50.000 0.00 0.00 37.23 3.18
3183 4578 1.070601 GCACCCAGCCAAATTCTTGTT 59.929 47.619 0.00 0.00 37.23 2.83
3184 4579 0.681175 GCACCCAGCCAAATTCTTGT 59.319 50.000 0.00 0.00 37.23 3.16
3185 4580 3.520187 GCACCCAGCCAAATTCTTG 57.480 52.632 0.00 0.00 37.23 3.02
3270 4665 2.785258 CTTAAAGCAGACGCCGGC 59.215 61.111 19.07 19.07 39.83 6.13
3294 4689 0.231534 GTCGATCGACAGCATGCATG 59.768 55.000 36.61 22.70 42.53 4.06
3295 4690 0.877649 GGTCGATCGACAGCATGCAT 60.878 55.000 39.98 7.42 46.20 3.96
3296 4691 1.519234 GGTCGATCGACAGCATGCA 60.519 57.895 39.98 6.92 46.20 3.96
3297 4692 2.580470 CGGTCGATCGACAGCATGC 61.580 63.158 39.98 24.74 46.20 4.06
3381 4802 9.532697 GTAATAACGCTAAAACGAAAGATTTCA 57.467 29.630 6.16 0.00 37.31 2.69
3385 4806 7.274250 ACGAGTAATAACGCTAAAACGAAAGAT 59.726 33.333 0.00 0.00 36.70 2.40
3392 4813 5.011370 GCACACGAGTAATAACGCTAAAAC 58.989 41.667 0.00 0.00 0.00 2.43
3400 4821 4.274069 CATGCATGCACACGAGTAATAAC 58.726 43.478 25.37 0.00 0.00 1.89
3424 4845 4.000928 ACATACACCCCTCTCTTCTCAT 57.999 45.455 0.00 0.00 0.00 2.90
3438 4859 4.097714 CGCACCATTCATCAAACATACAC 58.902 43.478 0.00 0.00 0.00 2.90
3441 4863 3.427368 GCACGCACCATTCATCAAACATA 60.427 43.478 0.00 0.00 0.00 2.29
3463 4885 1.871039 TCACGATGATCTGCATGCATG 59.129 47.619 22.97 22.70 37.34 4.06
3464 4886 2.249844 TCACGATGATCTGCATGCAT 57.750 45.000 22.97 7.28 37.34 3.96
3799 5230 8.556213 TCTATAACGGACAGCTTGTTTAAATT 57.444 30.769 0.00 0.00 0.00 1.82
3800 5231 7.822822 ACTCTATAACGGACAGCTTGTTTAAAT 59.177 33.333 0.00 0.00 0.00 1.40
3801 5232 7.156673 ACTCTATAACGGACAGCTTGTTTAAA 58.843 34.615 0.00 0.00 0.00 1.52
3802 5233 6.694447 ACTCTATAACGGACAGCTTGTTTAA 58.306 36.000 0.00 0.00 0.00 1.52
3803 5234 6.152323 AGACTCTATAACGGACAGCTTGTTTA 59.848 38.462 0.00 0.00 0.00 2.01
3811 5242 4.096532 TGCTTCAGACTCTATAACGGACAG 59.903 45.833 0.00 0.00 0.00 3.51
3837 5272 3.588955 TCGGATCATCACAAGACAACAG 58.411 45.455 0.00 0.00 0.00 3.16
3855 5290 2.805845 CCGACTGTATTACCAGTTCGG 58.194 52.381 13.58 13.58 45.46 4.30
3881 5324 3.838795 GCAGACGTACGCAAGCCG 61.839 66.667 16.72 0.00 45.62 5.52
3889 5332 2.813908 CAAGGGCGGCAGACGTAC 60.814 66.667 12.47 0.00 46.52 3.67
3921 5364 3.057221 CGACTGTGTACGTACAACAATCG 59.943 47.826 28.90 28.90 38.04 3.34
3942 5385 3.098958 GCCATGCACAAACGCACG 61.099 61.111 0.00 0.00 46.56 5.34
4046 5491 0.109365 CTGTGTGTGCGAGAGAGAGG 60.109 60.000 0.00 0.00 0.00 3.69
4053 5498 0.941463 GACAGTCCTGTGTGTGCGAG 60.941 60.000 4.35 0.00 45.05 5.03
4054 5499 1.067416 GACAGTCCTGTGTGTGCGA 59.933 57.895 4.35 0.00 45.05 5.10
4055 5500 1.227234 TGACAGTCCTGTGTGTGCG 60.227 57.895 4.35 0.00 45.05 5.34
4056 5501 1.490693 CGTGACAGTCCTGTGTGTGC 61.491 60.000 4.35 0.00 45.05 4.57
4057 5502 1.490693 GCGTGACAGTCCTGTGTGTG 61.491 60.000 4.35 0.00 45.05 3.82
4058 5503 1.227263 GCGTGACAGTCCTGTGTGT 60.227 57.895 4.35 0.00 45.05 3.72
4059 5504 0.809636 TTGCGTGACAGTCCTGTGTG 60.810 55.000 4.35 0.00 45.05 3.82
4060 5505 0.810031 GTTGCGTGACAGTCCTGTGT 60.810 55.000 4.35 0.00 45.05 3.72
4154 5599 0.762418 TCGGTCAGGATTTGTGGTGT 59.238 50.000 0.00 0.00 0.00 4.16
4157 5602 2.472695 TTCTCGGTCAGGATTTGTGG 57.527 50.000 0.00 0.00 0.00 4.17
4159 5604 2.224523 TGCTTTCTCGGTCAGGATTTGT 60.225 45.455 0.00 0.00 0.00 2.83
4161 5606 2.039084 ACTGCTTTCTCGGTCAGGATTT 59.961 45.455 0.00 0.00 0.00 2.17
4162 5607 1.625818 ACTGCTTTCTCGGTCAGGATT 59.374 47.619 0.00 0.00 0.00 3.01
4163 5608 1.270907 ACTGCTTTCTCGGTCAGGAT 58.729 50.000 0.00 0.00 0.00 3.24
4164 5609 1.048601 AACTGCTTTCTCGGTCAGGA 58.951 50.000 0.00 0.00 0.00 3.86
4166 5611 2.213499 ACAAACTGCTTTCTCGGTCAG 58.787 47.619 0.00 0.00 0.00 3.51
4168 5613 2.221981 CAGACAAACTGCTTTCTCGGTC 59.778 50.000 0.00 0.00 39.86 4.79
4170 5615 2.483876 TCAGACAAACTGCTTTCTCGG 58.516 47.619 0.00 0.00 45.38 4.63
4172 5617 4.754114 AGACATCAGACAAACTGCTTTCTC 59.246 41.667 0.00 0.00 45.38 2.87
4173 5618 4.514441 CAGACATCAGACAAACTGCTTTCT 59.486 41.667 0.00 0.00 45.38 2.52
4174 5619 4.512944 TCAGACATCAGACAAACTGCTTTC 59.487 41.667 0.00 0.00 45.38 2.62
4175 5620 4.454678 TCAGACATCAGACAAACTGCTTT 58.545 39.130 0.00 0.00 45.38 3.51
4176 5621 4.063689 CTCAGACATCAGACAAACTGCTT 58.936 43.478 0.00 0.00 45.38 3.91
4177 5622 3.323115 TCTCAGACATCAGACAAACTGCT 59.677 43.478 0.00 0.00 45.38 4.24
4178 5623 3.431572 GTCTCAGACATCAGACAAACTGC 59.568 47.826 0.00 0.00 39.17 4.40
4179 5624 3.993081 GGTCTCAGACATCAGACAAACTG 59.007 47.826 7.24 0.00 40.85 3.16
4180 5625 3.305676 CGGTCTCAGACATCAGACAAACT 60.306 47.826 7.24 0.00 40.85 2.66
4181 5626 2.989840 CGGTCTCAGACATCAGACAAAC 59.010 50.000 7.24 0.00 40.85 2.93
4182 5627 2.029020 CCGGTCTCAGACATCAGACAAA 60.029 50.000 7.24 0.00 40.85 2.83
4183 5628 1.546029 CCGGTCTCAGACATCAGACAA 59.454 52.381 7.24 0.00 40.85 3.18
4184 5629 1.177401 CCGGTCTCAGACATCAGACA 58.823 55.000 7.24 0.00 40.85 3.41
4185 5630 0.457851 CCCGGTCTCAGACATCAGAC 59.542 60.000 7.24 0.00 38.71 3.51
4190 5635 0.250513 GCTTTCCCGGTCTCAGACAT 59.749 55.000 7.24 0.00 33.68 3.06
4193 5638 0.832135 ACTGCTTTCCCGGTCTCAGA 60.832 55.000 0.00 0.00 0.00 3.27
4201 5646 1.593196 TCAGACAAACTGCTTTCCCG 58.407 50.000 0.00 0.00 45.38 5.14
4203 5648 3.490933 GGGTTTCAGACAAACTGCTTTCC 60.491 47.826 0.00 0.00 45.38 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.