Multiple sequence alignment - TraesCS3A01G366800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G366800 chr3A 100.000 3968 0 0 1 3968 615937606 615941573 0.000000e+00 7328.0
1 TraesCS3A01G366800 chr3A 88.675 468 40 5 3514 3968 26529135 26528668 3.460000e-155 558.0
2 TraesCS3A01G366800 chr3B 89.374 3181 158 73 391 3473 629195780 629192682 0.000000e+00 3836.0
3 TraesCS3A01G366800 chr3B 87.327 505 49 6 3477 3968 734231033 734230531 7.440000e-157 564.0
4 TraesCS3A01G366800 chr3B 86.982 507 51 6 3475 3968 734239389 734238885 1.250000e-154 556.0
5 TraesCS3A01G366800 chr3D 90.749 2951 125 55 615 3470 473481914 473484811 0.000000e+00 3801.0
6 TraesCS3A01G366800 chr3D 82.895 304 11 11 350 623 473481584 473481876 6.630000e-58 235.0
7 TraesCS3A01G366800 chr1D 76.809 1893 302 96 994 2842 375989724 375991523 0.000000e+00 937.0
8 TraesCS3A01G366800 chr1D 87.954 523 37 8 3471 3968 250741388 250740867 9.490000e-166 593.0
9 TraesCS3A01G366800 chr1A 76.427 1892 295 97 998 2842 474791650 474793437 0.000000e+00 883.0
10 TraesCS3A01G366800 chr1A 74.714 1400 262 61 1364 2722 59211675 59210327 1.250000e-149 540.0
11 TraesCS3A01G366800 chr1A 87.097 62 8 0 290 351 50987131 50987192 1.980000e-08 71.3
12 TraesCS3A01G366800 chr1B 76.126 1910 318 94 994 2842 502217999 502219831 0.000000e+00 874.0
13 TraesCS3A01G366800 chr6A 91.304 506 31 6 3476 3968 2277835 2277330 0.000000e+00 678.0
14 TraesCS3A01G366800 chr6A 77.468 466 88 10 3472 3923 558295710 558295248 3.040000e-66 263.0
15 TraesCS3A01G366800 chr6A 77.253 466 89 10 3472 3923 558454313 558453851 1.410000e-64 257.0
16 TraesCS3A01G366800 chr5A 89.571 489 38 5 3493 3968 463764177 463764665 3.390000e-170 608.0
17 TraesCS3A01G366800 chr5A 97.450 353 7 2 1 352 277841154 277841505 5.670000e-168 601.0
18 TraesCS3A01G366800 chr5A 96.562 349 8 3 1 348 670554913 670555258 3.440000e-160 575.0
19 TraesCS3A01G366800 chr5A 85.673 349 22 3 1 348 425056870 425056549 3.800000e-90 342.0
20 TraesCS3A01G366800 chr5A 84.320 338 21 4 20 357 698464558 698464863 6.440000e-78 302.0
21 TraesCS3A01G366800 chr5D 74.935 1528 273 70 1361 2842 42725390 42726853 2.040000e-167 599.0
22 TraesCS3A01G366800 chr5D 74.623 1525 268 75 1361 2842 249912099 249913547 2.680000e-156 562.0
23 TraesCS3A01G366800 chr5D 86.290 496 54 13 3475 3968 486532315 486531832 9.770000e-146 527.0
24 TraesCS3A01G366800 chr5D 87.549 257 23 4 3475 3726 40089878 40090130 5.020000e-74 289.0
25 TraesCS3A01G366800 chr7D 87.968 507 48 5 3475 3968 2826031 2825525 1.590000e-163 586.0
26 TraesCS3A01G366800 chr7D 87.380 523 40 8 3471 3968 136708148 136707627 9.560000e-161 577.0
27 TraesCS3A01G366800 chr7D 87.356 522 41 5 3472 3968 220981881 220982402 3.440000e-160 575.0
28 TraesCS3A01G366800 chr7D 87.738 473 33 9 3477 3924 500929303 500929775 2.720000e-146 529.0
29 TraesCS3A01G366800 chr7D 86.681 458 32 9 3463 3894 567267371 567267825 7.710000e-132 481.0
30 TraesCS3A01G366800 chr7D 95.652 46 2 0 93 138 553072196 553072151 1.530000e-09 75.0
31 TraesCS3A01G366800 chr6D 87.984 516 37 10 3475 3965 47269892 47270407 1.590000e-163 586.0
32 TraesCS3A01G366800 chr6D 87.669 519 39 10 3475 3968 254819997 254820515 7.390000e-162 580.0
33 TraesCS3A01G366800 chr6D 87.548 522 36 10 3475 3968 56859091 56858571 9.560000e-161 577.0
34 TraesCS3A01G366800 chr4D 87.476 519 40 8 3475 3968 427925697 427925179 3.440000e-160 575.0
35 TraesCS3A01G366800 chr4D 86.832 524 38 13 3471 3968 453054580 453054062 1.250000e-154 556.0
36 TraesCS3A01G366800 chr4D 86.590 522 45 7 3472 3968 195022588 195023109 1.610000e-153 553.0
37 TraesCS3A01G366800 chr4D 86.750 400 28 7 3594 3968 442184140 442183741 4.740000e-114 422.0
38 TraesCS3A01G366800 chr4D 86.648 352 20 9 3476 3801 506212633 506212283 8.100000e-97 364.0
39 TraesCS3A01G366800 chr2D 87.354 514 48 7 3471 3968 580120450 580119938 1.240000e-159 573.0
40 TraesCS3A01G366800 chr2D 74.052 1530 272 69 1361 2842 185365809 185367261 9.840000e-141 510.0
41 TraesCS3A01G366800 chr2D 92.157 204 16 0 3471 3674 623352135 623352338 5.020000e-74 289.0
42 TraesCS3A01G366800 chr2B 84.770 348 27 11 1 348 666176863 666176542 3.820000e-85 326.0
43 TraesCS3A01G366800 chr2B 86.905 252 27 2 3475 3726 195006925 195006680 1.090000e-70 278.0
44 TraesCS3A01G366800 chr5B 85.882 255 29 3 3475 3726 530924972 530925222 8.450000e-67 265.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G366800 chr3A 615937606 615941573 3967 False 7328 7328 100.000 1 3968 1 chr3A.!!$F1 3967
1 TraesCS3A01G366800 chr3B 629192682 629195780 3098 True 3836 3836 89.374 391 3473 1 chr3B.!!$R1 3082
2 TraesCS3A01G366800 chr3B 734230531 734231033 502 True 564 564 87.327 3477 3968 1 chr3B.!!$R2 491
3 TraesCS3A01G366800 chr3B 734238885 734239389 504 True 556 556 86.982 3475 3968 1 chr3B.!!$R3 493
4 TraesCS3A01G366800 chr3D 473481584 473484811 3227 False 2018 3801 86.822 350 3470 2 chr3D.!!$F1 3120
5 TraesCS3A01G366800 chr1D 375989724 375991523 1799 False 937 937 76.809 994 2842 1 chr1D.!!$F1 1848
6 TraesCS3A01G366800 chr1D 250740867 250741388 521 True 593 593 87.954 3471 3968 1 chr1D.!!$R1 497
7 TraesCS3A01G366800 chr1A 474791650 474793437 1787 False 883 883 76.427 998 2842 1 chr1A.!!$F2 1844
8 TraesCS3A01G366800 chr1A 59210327 59211675 1348 True 540 540 74.714 1364 2722 1 chr1A.!!$R1 1358
9 TraesCS3A01G366800 chr1B 502217999 502219831 1832 False 874 874 76.126 994 2842 1 chr1B.!!$F1 1848
10 TraesCS3A01G366800 chr6A 2277330 2277835 505 True 678 678 91.304 3476 3968 1 chr6A.!!$R1 492
11 TraesCS3A01G366800 chr5D 42725390 42726853 1463 False 599 599 74.935 1361 2842 1 chr5D.!!$F2 1481
12 TraesCS3A01G366800 chr5D 249912099 249913547 1448 False 562 562 74.623 1361 2842 1 chr5D.!!$F3 1481
13 TraesCS3A01G366800 chr7D 2825525 2826031 506 True 586 586 87.968 3475 3968 1 chr7D.!!$R1 493
14 TraesCS3A01G366800 chr7D 136707627 136708148 521 True 577 577 87.380 3471 3968 1 chr7D.!!$R2 497
15 TraesCS3A01G366800 chr7D 220981881 220982402 521 False 575 575 87.356 3472 3968 1 chr7D.!!$F1 496
16 TraesCS3A01G366800 chr6D 47269892 47270407 515 False 586 586 87.984 3475 3965 1 chr6D.!!$F1 490
17 TraesCS3A01G366800 chr6D 254819997 254820515 518 False 580 580 87.669 3475 3968 1 chr6D.!!$F2 493
18 TraesCS3A01G366800 chr6D 56858571 56859091 520 True 577 577 87.548 3475 3968 1 chr6D.!!$R1 493
19 TraesCS3A01G366800 chr4D 427925179 427925697 518 True 575 575 87.476 3475 3968 1 chr4D.!!$R1 493
20 TraesCS3A01G366800 chr4D 453054062 453054580 518 True 556 556 86.832 3471 3968 1 chr4D.!!$R3 497
21 TraesCS3A01G366800 chr4D 195022588 195023109 521 False 553 553 86.590 3472 3968 1 chr4D.!!$F1 496
22 TraesCS3A01G366800 chr2D 580119938 580120450 512 True 573 573 87.354 3471 3968 1 chr2D.!!$R1 497
23 TraesCS3A01G366800 chr2D 185365809 185367261 1452 False 510 510 74.052 1361 2842 1 chr2D.!!$F1 1481

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.03254 GCACAAAAGAAGCCCACCAG 59.967 55.0 0.00 0.0 0.00 4.00 F
141 142 0.03831 AAAGAAGCCCACCAGCTACC 59.962 55.0 0.00 0.0 44.11 3.18 F
597 633 0.04087 TTTTACCACACGCGTGCATG 60.041 50.0 37.35 27.8 42.17 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1077 1185 2.617274 GGTGCAGAAGCCGGTGAAC 61.617 63.158 1.90 0.0 41.13 3.18 R
1968 2116 4.224274 AAACGCGGGTCGGTGTCA 62.224 61.111 12.47 0.0 43.86 3.58 R
3026 3295 7.545489 AGCTTAGTACAATACTACACCAAGAC 58.455 38.462 0.00 0.0 40.74 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 9.272901 GAAAATAAAACAAACAAAAACTCCAGC 57.727 29.630 0.00 0.00 0.00 4.85
54 55 7.913674 AATAAAACAAACAAAAACTCCAGCA 57.086 28.000 0.00 0.00 0.00 4.41
55 56 7.913674 ATAAAACAAACAAAAACTCCAGCAA 57.086 28.000 0.00 0.00 0.00 3.91
56 57 6.625873 AAAACAAACAAAAACTCCAGCAAA 57.374 29.167 0.00 0.00 0.00 3.68
57 58 6.625873 AAACAAACAAAAACTCCAGCAAAA 57.374 29.167 0.00 0.00 0.00 2.44
58 59 6.625873 AACAAACAAAAACTCCAGCAAAAA 57.374 29.167 0.00 0.00 0.00 1.94
59 60 6.239908 ACAAACAAAAACTCCAGCAAAAAG 57.760 33.333 0.00 0.00 0.00 2.27
60 61 5.994668 ACAAACAAAAACTCCAGCAAAAAGA 59.005 32.000 0.00 0.00 0.00 2.52
61 62 6.484977 ACAAACAAAAACTCCAGCAAAAAGAA 59.515 30.769 0.00 0.00 0.00 2.52
62 63 6.480524 AACAAAAACTCCAGCAAAAAGAAC 57.519 33.333 0.00 0.00 0.00 3.01
63 64 5.546526 ACAAAAACTCCAGCAAAAAGAACA 58.453 33.333 0.00 0.00 0.00 3.18
64 65 5.994668 ACAAAAACTCCAGCAAAAAGAACAA 59.005 32.000 0.00 0.00 0.00 2.83
65 66 6.484977 ACAAAAACTCCAGCAAAAAGAACAAA 59.515 30.769 0.00 0.00 0.00 2.83
66 67 6.480524 AAAACTCCAGCAAAAAGAACAAAC 57.519 33.333 0.00 0.00 0.00 2.93
67 68 4.799564 ACTCCAGCAAAAAGAACAAACA 57.200 36.364 0.00 0.00 0.00 2.83
68 69 5.146010 ACTCCAGCAAAAAGAACAAACAA 57.854 34.783 0.00 0.00 0.00 2.83
69 70 5.546526 ACTCCAGCAAAAAGAACAAACAAA 58.453 33.333 0.00 0.00 0.00 2.83
70 71 5.639082 ACTCCAGCAAAAAGAACAAACAAAG 59.361 36.000 0.00 0.00 0.00 2.77
71 72 5.546526 TCCAGCAAAAAGAACAAACAAAGT 58.453 33.333 0.00 0.00 0.00 2.66
72 73 6.692486 TCCAGCAAAAAGAACAAACAAAGTA 58.308 32.000 0.00 0.00 0.00 2.24
73 74 7.155328 TCCAGCAAAAAGAACAAACAAAGTAA 58.845 30.769 0.00 0.00 0.00 2.24
74 75 7.657761 TCCAGCAAAAAGAACAAACAAAGTAAA 59.342 29.630 0.00 0.00 0.00 2.01
75 76 7.956943 CCAGCAAAAAGAACAAACAAAGTAAAG 59.043 33.333 0.00 0.00 0.00 1.85
76 77 7.478355 CAGCAAAAAGAACAAACAAAGTAAAGC 59.522 33.333 0.00 0.00 0.00 3.51
77 78 6.740905 GCAAAAAGAACAAACAAAGTAAAGCC 59.259 34.615 0.00 0.00 0.00 4.35
78 79 7.572168 GCAAAAAGAACAAACAAAGTAAAGCCA 60.572 33.333 0.00 0.00 0.00 4.75
79 80 7.971183 AAAAGAACAAACAAAGTAAAGCCAA 57.029 28.000 0.00 0.00 0.00 4.52
80 81 7.971183 AAAGAACAAACAAAGTAAAGCCAAA 57.029 28.000 0.00 0.00 0.00 3.28
81 82 6.961359 AGAACAAACAAAGTAAAGCCAAAC 57.039 33.333 0.00 0.00 0.00 2.93
82 83 6.459923 AGAACAAACAAAGTAAAGCCAAACA 58.540 32.000 0.00 0.00 0.00 2.83
83 84 7.102993 AGAACAAACAAAGTAAAGCCAAACAT 58.897 30.769 0.00 0.00 0.00 2.71
84 85 6.660887 ACAAACAAAGTAAAGCCAAACATG 57.339 33.333 0.00 0.00 0.00 3.21
85 86 6.169800 ACAAACAAAGTAAAGCCAAACATGT 58.830 32.000 0.00 0.00 0.00 3.21
86 87 6.091986 ACAAACAAAGTAAAGCCAAACATGTG 59.908 34.615 0.00 0.00 0.00 3.21
87 88 5.590530 ACAAAGTAAAGCCAAACATGTGA 57.409 34.783 0.00 0.00 0.00 3.58
88 89 5.348164 ACAAAGTAAAGCCAAACATGTGAC 58.652 37.500 0.00 0.00 0.00 3.67
89 90 4.584327 AAGTAAAGCCAAACATGTGACC 57.416 40.909 0.00 0.00 0.00 4.02
90 91 3.832527 AGTAAAGCCAAACATGTGACCT 58.167 40.909 0.00 0.00 0.00 3.85
91 92 4.980573 AGTAAAGCCAAACATGTGACCTA 58.019 39.130 0.00 0.00 0.00 3.08
92 93 4.760204 AGTAAAGCCAAACATGTGACCTAC 59.240 41.667 0.00 0.00 0.00 3.18
93 94 2.949177 AGCCAAACATGTGACCTACA 57.051 45.000 0.00 0.00 44.87 2.74
94 95 3.222173 AGCCAAACATGTGACCTACAA 57.778 42.857 0.00 0.00 43.77 2.41
95 96 2.884639 AGCCAAACATGTGACCTACAAC 59.115 45.455 0.00 0.00 43.77 3.32
96 97 2.884639 GCCAAACATGTGACCTACAACT 59.115 45.455 0.00 0.00 43.77 3.16
97 98 3.317993 GCCAAACATGTGACCTACAACTT 59.682 43.478 0.00 0.00 43.77 2.66
98 99 4.517453 GCCAAACATGTGACCTACAACTTA 59.483 41.667 0.00 0.00 43.77 2.24
99 100 5.183140 GCCAAACATGTGACCTACAACTTAT 59.817 40.000 0.00 0.00 43.77 1.73
100 101 6.611381 CCAAACATGTGACCTACAACTTATG 58.389 40.000 0.00 0.00 43.77 1.90
101 102 6.349280 CCAAACATGTGACCTACAACTTATGG 60.349 42.308 0.00 0.00 43.77 2.74
102 103 4.261801 ACATGTGACCTACAACTTATGGC 58.738 43.478 0.00 0.00 43.77 4.40
103 104 3.343941 TGTGACCTACAACTTATGGCC 57.656 47.619 0.00 0.00 36.06 5.36
104 105 2.026636 TGTGACCTACAACTTATGGCCC 60.027 50.000 0.00 0.00 36.06 5.80
105 106 2.026636 GTGACCTACAACTTATGGCCCA 60.027 50.000 0.00 0.00 0.00 5.36
106 107 2.849943 TGACCTACAACTTATGGCCCAT 59.150 45.455 0.00 0.00 0.00 4.00
107 108 3.214328 GACCTACAACTTATGGCCCATG 58.786 50.000 6.46 0.00 0.00 3.66
108 109 1.956477 CCTACAACTTATGGCCCATGC 59.044 52.381 6.46 0.00 0.00 4.06
109 110 2.653726 CTACAACTTATGGCCCATGCA 58.346 47.619 6.46 0.00 40.13 3.96
110 111 1.477553 ACAACTTATGGCCCATGCAG 58.522 50.000 6.46 4.83 40.13 4.41
111 112 0.748450 CAACTTATGGCCCATGCAGG 59.252 55.000 6.46 0.00 40.13 4.85
112 113 0.630673 AACTTATGGCCCATGCAGGA 59.369 50.000 6.46 0.00 41.22 3.86
113 114 0.630673 ACTTATGGCCCATGCAGGAA 59.369 50.000 6.46 0.00 41.22 3.36
114 115 1.006998 ACTTATGGCCCATGCAGGAAA 59.993 47.619 6.46 0.00 41.22 3.13
115 116 1.410153 CTTATGGCCCATGCAGGAAAC 59.590 52.381 6.46 0.00 41.22 2.78
116 117 0.751277 TATGGCCCATGCAGGAAACG 60.751 55.000 6.46 0.00 41.22 3.60
117 118 3.451894 GGCCCATGCAGGAAACGG 61.452 66.667 0.00 0.00 41.22 4.44
127 128 2.861462 CAGGAAACGGCACAAAAGAA 57.139 45.000 0.00 0.00 0.00 2.52
128 129 2.731217 CAGGAAACGGCACAAAAGAAG 58.269 47.619 0.00 0.00 0.00 2.85
129 130 1.067060 AGGAAACGGCACAAAAGAAGC 59.933 47.619 0.00 0.00 0.00 3.86
130 131 1.487482 GAAACGGCACAAAAGAAGCC 58.513 50.000 0.00 0.00 44.89 4.35
131 132 0.104120 AAACGGCACAAAAGAAGCCC 59.896 50.000 0.00 0.00 45.56 5.19
132 133 1.040339 AACGGCACAAAAGAAGCCCA 61.040 50.000 0.00 0.00 45.56 5.36
133 134 1.007387 CGGCACAAAAGAAGCCCAC 60.007 57.895 0.00 0.00 45.56 4.61
134 135 1.367471 GGCACAAAAGAAGCCCACC 59.633 57.895 0.00 0.00 42.58 4.61
135 136 1.398958 GGCACAAAAGAAGCCCACCA 61.399 55.000 0.00 0.00 42.58 4.17
136 137 0.032540 GCACAAAAGAAGCCCACCAG 59.967 55.000 0.00 0.00 0.00 4.00
137 138 0.032540 CACAAAAGAAGCCCACCAGC 59.967 55.000 0.00 0.00 0.00 4.85
139 140 1.144913 ACAAAAGAAGCCCACCAGCTA 59.855 47.619 0.00 0.00 44.11 3.32
140 141 1.541588 CAAAAGAAGCCCACCAGCTAC 59.458 52.381 0.00 0.00 44.11 3.58
141 142 0.038310 AAAGAAGCCCACCAGCTACC 59.962 55.000 0.00 0.00 44.11 3.18
142 143 1.853250 AAGAAGCCCACCAGCTACCC 61.853 60.000 0.00 0.00 44.11 3.69
143 144 2.204151 AAGCCCACCAGCTACCCT 60.204 61.111 0.00 0.00 44.11 4.34
144 145 0.981277 GAAGCCCACCAGCTACCCTA 60.981 60.000 0.00 0.00 44.11 3.53
145 146 0.549169 AAGCCCACCAGCTACCCTAA 60.549 55.000 0.00 0.00 44.11 2.69
146 147 0.549169 AGCCCACCAGCTACCCTAAA 60.549 55.000 0.00 0.00 42.70 1.85
147 148 0.330267 GCCCACCAGCTACCCTAAAA 59.670 55.000 0.00 0.00 0.00 1.52
148 149 1.272258 GCCCACCAGCTACCCTAAAAA 60.272 52.381 0.00 0.00 0.00 1.94
164 165 2.197324 AAAAAGCCCACCAGCGGA 59.803 55.556 1.50 0.00 38.01 5.54
165 166 1.903404 AAAAAGCCCACCAGCGGAG 60.903 57.895 1.50 0.00 38.01 4.63
166 167 2.351924 AAAAAGCCCACCAGCGGAGA 62.352 55.000 1.50 0.00 38.01 3.71
167 168 2.351924 AAAAGCCCACCAGCGGAGAA 62.352 55.000 1.50 0.00 38.01 2.87
168 169 2.351924 AAAGCCCACCAGCGGAGAAA 62.352 55.000 1.50 0.00 38.01 2.52
169 170 2.282180 GCCCACCAGCGGAGAAAA 60.282 61.111 1.50 0.00 0.00 2.29
170 171 1.901464 GCCCACCAGCGGAGAAAAA 60.901 57.895 1.50 0.00 0.00 1.94
189 190 2.067365 AAAAGGCAAAAGGAGACGGT 57.933 45.000 0.00 0.00 0.00 4.83
190 191 1.318576 AAAGGCAAAAGGAGACGGTG 58.681 50.000 0.00 0.00 0.00 4.94
191 192 1.172812 AAGGCAAAAGGAGACGGTGC 61.173 55.000 0.00 0.00 36.09 5.01
192 193 2.556287 GCAAAAGGAGACGGTGCG 59.444 61.111 0.00 0.00 0.00 5.34
193 194 2.966309 GCAAAAGGAGACGGTGCGG 61.966 63.158 0.00 0.00 0.00 5.69
194 195 2.668550 AAAAGGAGACGGTGCGGC 60.669 61.111 0.00 0.00 33.59 6.53
195 196 4.699522 AAAGGAGACGGTGCGGCC 62.700 66.667 0.00 0.00 34.11 6.13
211 212 3.357079 CCGCACCAGCTGACCAAC 61.357 66.667 17.39 0.00 39.10 3.77
212 213 2.591429 CGCACCAGCTGACCAACA 60.591 61.111 17.39 0.00 39.10 3.33
213 214 2.186160 CGCACCAGCTGACCAACAA 61.186 57.895 17.39 0.00 39.10 2.83
214 215 1.360192 GCACCAGCTGACCAACAAC 59.640 57.895 17.39 0.00 37.91 3.32
215 216 1.648720 CACCAGCTGACCAACAACG 59.351 57.895 17.39 0.00 0.00 4.10
216 217 2.186826 ACCAGCTGACCAACAACGC 61.187 57.895 17.39 0.00 0.00 4.84
217 218 2.249309 CAGCTGACCAACAACGCG 59.751 61.111 8.42 3.53 0.00 6.01
218 219 2.203015 AGCTGACCAACAACGCGT 60.203 55.556 5.58 5.58 0.00 6.01
219 220 2.052237 GCTGACCAACAACGCGTG 60.052 61.111 14.98 10.05 0.00 5.34
220 221 2.052237 CTGACCAACAACGCGTGC 60.052 61.111 14.98 0.00 0.00 5.34
221 222 3.838229 CTGACCAACAACGCGTGCG 62.838 63.158 14.98 13.39 46.03 5.34
231 232 3.626244 CGCGTGCGTCAACACAGT 61.626 61.111 6.00 0.00 40.73 3.55
232 233 2.245532 GCGTGCGTCAACACAGTC 59.754 61.111 0.00 0.00 40.73 3.51
233 234 2.539503 CGTGCGTCAACACAGTCG 59.460 61.111 0.00 0.00 40.73 4.18
236 237 2.245532 GCGTCAACACAGTCGCAC 59.754 61.111 0.00 0.00 46.40 5.34
237 238 2.237751 GCGTCAACACAGTCGCACT 61.238 57.895 0.00 0.00 46.40 4.40
238 239 1.846648 CGTCAACACAGTCGCACTC 59.153 57.895 0.00 0.00 0.00 3.51
239 240 1.846648 GTCAACACAGTCGCACTCG 59.153 57.895 0.00 0.00 0.00 4.18
240 241 0.870307 GTCAACACAGTCGCACTCGT 60.870 55.000 0.00 0.00 36.96 4.18
241 242 0.664224 TCAACACAGTCGCACTCGTA 59.336 50.000 0.00 0.00 36.96 3.43
242 243 0.776451 CAACACAGTCGCACTCGTAC 59.224 55.000 0.00 0.00 36.96 3.67
243 244 0.659417 AACACAGTCGCACTCGTACG 60.659 55.000 9.53 9.53 36.96 3.67
244 245 1.082300 CACAGTCGCACTCGTACGT 60.082 57.895 16.05 0.00 36.96 3.57
245 246 1.082300 ACAGTCGCACTCGTACGTG 60.082 57.895 16.05 15.64 37.94 4.49
246 247 1.796355 CAGTCGCACTCGTACGTGG 60.796 63.158 20.21 14.20 35.47 4.94
247 248 2.503375 GTCGCACTCGTACGTGGG 60.503 66.667 20.21 17.74 45.82 4.61
248 249 4.409218 TCGCACTCGTACGTGGGC 62.409 66.667 29.39 29.39 44.59 5.36
249 250 4.710695 CGCACTCGTACGTGGGCA 62.711 66.667 35.04 9.20 40.25 5.36
250 251 2.356553 GCACTCGTACGTGGGCAA 60.357 61.111 32.80 5.82 37.87 4.52
251 252 2.380410 GCACTCGTACGTGGGCAAG 61.380 63.158 32.80 17.02 37.87 4.01
252 253 1.006571 CACTCGTACGTGGGCAAGT 60.007 57.895 20.21 10.34 0.00 3.16
253 254 0.241749 CACTCGTACGTGGGCAAGTA 59.758 55.000 20.21 0.00 0.00 2.24
254 255 0.242017 ACTCGTACGTGGGCAAGTAC 59.758 55.000 20.21 0.00 40.99 2.73
255 256 0.524862 CTCGTACGTGGGCAAGTACT 59.475 55.000 16.05 0.00 41.80 2.73
256 257 1.739466 CTCGTACGTGGGCAAGTACTA 59.261 52.381 16.05 0.00 41.80 1.82
257 258 2.158559 TCGTACGTGGGCAAGTACTAA 58.841 47.619 16.05 0.00 41.80 2.24
258 259 2.556189 TCGTACGTGGGCAAGTACTAAA 59.444 45.455 16.05 0.00 41.80 1.85
259 260 3.193267 TCGTACGTGGGCAAGTACTAAAT 59.807 43.478 16.05 0.00 41.80 1.40
260 261 3.305094 CGTACGTGGGCAAGTACTAAATG 59.695 47.826 7.22 0.00 41.80 2.32
261 262 2.706890 ACGTGGGCAAGTACTAAATGG 58.293 47.619 0.00 0.00 0.00 3.16
262 263 1.400494 CGTGGGCAAGTACTAAATGGC 59.600 52.381 10.36 10.36 38.76 4.40
263 264 2.442413 GTGGGCAAGTACTAAATGGCA 58.558 47.619 18.16 0.00 41.02 4.92
264 265 2.163613 GTGGGCAAGTACTAAATGGCAC 59.836 50.000 18.16 11.79 41.02 5.01
265 266 1.400494 GGGCAAGTACTAAATGGCACG 59.600 52.381 18.16 0.00 41.02 5.34
266 267 2.352388 GGCAAGTACTAAATGGCACGA 58.648 47.619 13.19 0.00 39.25 4.35
267 268 2.745281 GGCAAGTACTAAATGGCACGAA 59.255 45.455 13.19 0.00 39.25 3.85
268 269 3.377172 GGCAAGTACTAAATGGCACGAAT 59.623 43.478 13.19 0.00 39.25 3.34
269 270 4.142469 GGCAAGTACTAAATGGCACGAATT 60.142 41.667 13.19 0.00 39.25 2.17
270 271 5.399013 GCAAGTACTAAATGGCACGAATTT 58.601 37.500 0.00 0.00 0.00 1.82
271 272 5.861787 GCAAGTACTAAATGGCACGAATTTT 59.138 36.000 0.00 0.00 0.00 1.82
272 273 7.024768 GCAAGTACTAAATGGCACGAATTTTA 58.975 34.615 0.00 0.00 0.00 1.52
273 274 7.700656 GCAAGTACTAAATGGCACGAATTTTAT 59.299 33.333 0.00 0.00 0.00 1.40
279 280 8.736244 ACTAAATGGCACGAATTTTATAACTGT 58.264 29.630 0.00 0.00 0.00 3.55
280 281 9.567848 CTAAATGGCACGAATTTTATAACTGTT 57.432 29.630 0.00 0.00 0.00 3.16
282 283 9.915629 AAATGGCACGAATTTTATAACTGTTAA 57.084 25.926 4.11 0.00 0.00 2.01
283 284 9.915629 AATGGCACGAATTTTATAACTGTTAAA 57.084 25.926 4.11 0.00 0.00 1.52
285 286 9.347934 TGGCACGAATTTTATAACTGTTAAATG 57.652 29.630 4.11 0.00 0.00 2.32
286 287 9.349145 GGCACGAATTTTATAACTGTTAAATGT 57.651 29.630 4.11 0.00 0.00 2.71
293 294 9.921637 ATTTTATAACTGTTAAATGTGTGGTGG 57.078 29.630 4.11 0.00 0.00 4.61
294 295 8.693120 TTTATAACTGTTAAATGTGTGGTGGA 57.307 30.769 4.11 0.00 0.00 4.02
295 296 8.871629 TTATAACTGTTAAATGTGTGGTGGAT 57.128 30.769 4.11 0.00 0.00 3.41
296 297 5.452078 AACTGTTAAATGTGTGGTGGATG 57.548 39.130 0.00 0.00 0.00 3.51
297 298 4.724399 ACTGTTAAATGTGTGGTGGATGA 58.276 39.130 0.00 0.00 0.00 2.92
298 299 4.518970 ACTGTTAAATGTGTGGTGGATGAC 59.481 41.667 0.00 0.00 0.00 3.06
299 300 4.724399 TGTTAAATGTGTGGTGGATGACT 58.276 39.130 0.00 0.00 0.00 3.41
300 301 5.136828 TGTTAAATGTGTGGTGGATGACTT 58.863 37.500 0.00 0.00 0.00 3.01
301 302 6.299922 TGTTAAATGTGTGGTGGATGACTTA 58.700 36.000 0.00 0.00 0.00 2.24
302 303 6.429692 TGTTAAATGTGTGGTGGATGACTTAG 59.570 38.462 0.00 0.00 0.00 2.18
303 304 4.908601 AATGTGTGGTGGATGACTTAGA 57.091 40.909 0.00 0.00 0.00 2.10
304 305 5.441718 AATGTGTGGTGGATGACTTAGAT 57.558 39.130 0.00 0.00 0.00 1.98
305 306 4.206477 TGTGTGGTGGATGACTTAGATG 57.794 45.455 0.00 0.00 0.00 2.90
306 307 3.582647 TGTGTGGTGGATGACTTAGATGT 59.417 43.478 0.00 0.00 0.00 3.06
307 308 3.935203 GTGTGGTGGATGACTTAGATGTG 59.065 47.826 0.00 0.00 0.00 3.21
308 309 3.837731 TGTGGTGGATGACTTAGATGTGA 59.162 43.478 0.00 0.00 0.00 3.58
309 310 4.184629 GTGGTGGATGACTTAGATGTGAC 58.815 47.826 0.00 0.00 0.00 3.67
310 311 3.837731 TGGTGGATGACTTAGATGTGACA 59.162 43.478 0.00 0.00 0.00 3.58
311 312 4.471025 TGGTGGATGACTTAGATGTGACAT 59.529 41.667 0.00 0.00 0.00 3.06
312 313 5.660864 TGGTGGATGACTTAGATGTGACATA 59.339 40.000 0.00 0.00 0.00 2.29
313 314 6.183360 TGGTGGATGACTTAGATGTGACATAG 60.183 42.308 0.00 0.00 0.00 2.23
314 315 6.183360 GGTGGATGACTTAGATGTGACATAGT 60.183 42.308 0.00 0.00 0.00 2.12
315 316 7.268586 GTGGATGACTTAGATGTGACATAGTT 58.731 38.462 0.00 0.00 0.00 2.24
316 317 8.414003 GTGGATGACTTAGATGTGACATAGTTA 58.586 37.037 0.00 0.00 0.00 2.24
317 318 9.147732 TGGATGACTTAGATGTGACATAGTTAT 57.852 33.333 0.00 0.93 0.00 1.89
318 319 9.988815 GGATGACTTAGATGTGACATAGTTATT 57.011 33.333 0.00 0.00 0.00 1.40
327 328 9.685276 AGATGTGACATAGTTATTTTTCATCCA 57.315 29.630 0.00 0.00 31.57 3.41
328 329 9.941664 GATGTGACATAGTTATTTTTCATCCAG 57.058 33.333 0.00 0.00 0.00 3.86
329 330 9.685276 ATGTGACATAGTTATTTTTCATCCAGA 57.315 29.630 0.00 0.00 0.00 3.86
330 331 9.685276 TGTGACATAGTTATTTTTCATCCAGAT 57.315 29.630 0.00 0.00 0.00 2.90
331 332 9.941664 GTGACATAGTTATTTTTCATCCAGATG 57.058 33.333 0.98 0.98 40.09 2.90
332 333 9.685276 TGACATAGTTATTTTTCATCCAGATGT 57.315 29.630 7.48 0.00 39.72 3.06
333 334 9.941664 GACATAGTTATTTTTCATCCAGATGTG 57.058 33.333 7.48 0.00 39.72 3.21
334 335 9.466497 ACATAGTTATTTTTCATCCAGATGTGT 57.534 29.630 7.48 0.00 39.72 3.72
342 343 7.815840 TTTTCATCCAGATGTGTTTTAGTCA 57.184 32.000 7.48 0.00 39.72 3.41
343 344 7.815840 TTTCATCCAGATGTGTTTTAGTCAA 57.184 32.000 7.48 0.00 39.72 3.18
344 345 8.408043 TTTCATCCAGATGTGTTTTAGTCAAT 57.592 30.769 7.48 0.00 39.72 2.57
345 346 7.615582 TCATCCAGATGTGTTTTAGTCAATC 57.384 36.000 7.48 0.00 39.72 2.67
346 347 7.397221 TCATCCAGATGTGTTTTAGTCAATCT 58.603 34.615 7.48 0.00 39.72 2.40
347 348 7.335171 TCATCCAGATGTGTTTTAGTCAATCTG 59.665 37.037 7.48 0.00 39.72 2.90
348 349 6.533730 TCCAGATGTGTTTTAGTCAATCTGT 58.466 36.000 9.03 0.00 34.22 3.41
442 460 1.134670 GCTAGGTGGGAAGCTGTGTAG 60.135 57.143 0.00 0.00 35.80 2.74
466 484 1.338973 CAGCAGGAAAGAGCAAAAGCA 59.661 47.619 0.00 0.00 0.00 3.91
467 485 1.612463 AGCAGGAAAGAGCAAAAGCAG 59.388 47.619 0.00 0.00 0.00 4.24
468 486 1.610522 GCAGGAAAGAGCAAAAGCAGA 59.389 47.619 0.00 0.00 0.00 4.26
469 487 2.351544 GCAGGAAAGAGCAAAAGCAGAG 60.352 50.000 0.00 0.00 0.00 3.35
498 516 3.417069 TGTTGGTCACGAATCAATCCT 57.583 42.857 0.00 0.00 0.00 3.24
499 517 3.334691 TGTTGGTCACGAATCAATCCTC 58.665 45.455 0.00 0.00 0.00 3.71
500 518 2.678336 GTTGGTCACGAATCAATCCTCC 59.322 50.000 0.00 0.00 0.00 4.30
502 520 2.093500 TGGTCACGAATCAATCCTCCTG 60.093 50.000 0.00 0.00 0.00 3.86
503 521 2.093447 GGTCACGAATCAATCCTCCTGT 60.093 50.000 0.00 0.00 0.00 4.00
504 522 3.600388 GTCACGAATCAATCCTCCTGTT 58.400 45.455 0.00 0.00 0.00 3.16
505 523 3.619038 GTCACGAATCAATCCTCCTGTTC 59.381 47.826 0.00 0.00 0.00 3.18
506 524 2.604914 CACGAATCAATCCTCCTGTTCG 59.395 50.000 0.00 0.00 42.73 3.95
507 525 2.205074 CGAATCAATCCTCCTGTTCGG 58.795 52.381 0.00 0.00 35.96 4.30
561 597 2.044135 CGAAAGGCAAAAGAAGAACGC 58.956 47.619 0.00 0.00 0.00 4.84
596 632 0.663688 TTTTTACCACACGCGTGCAT 59.336 45.000 37.35 24.74 42.17 3.96
597 633 0.040870 TTTTACCACACGCGTGCATG 60.041 50.000 37.35 27.80 42.17 4.06
598 634 2.450960 TTTACCACACGCGTGCATGC 62.451 55.000 37.35 21.27 42.17 4.06
661 743 3.034878 CGATCGATCGCCTCCAGT 58.965 61.111 32.34 0.00 43.84 4.00
662 744 1.371022 CGATCGATCGCCTCCAGTG 60.371 63.158 32.34 5.85 43.84 3.66
676 758 1.277273 TCCAGTGCAGAATGTGAGAGG 59.723 52.381 0.00 0.00 39.31 3.69
687 769 2.360726 TGAGAGGGACGCTACGCA 60.361 61.111 0.00 0.00 39.71 5.24
690 772 3.807538 GAGGGACGCTACGCACGA 61.808 66.667 0.00 0.00 0.00 4.35
693 775 4.771356 GGACGCTACGCACGAGCA 62.771 66.667 5.50 0.00 42.27 4.26
695 777 4.337060 ACGCTACGCACGAGCACA 62.337 61.111 5.50 0.00 42.27 4.57
696 778 3.827784 CGCTACGCACGAGCACAC 61.828 66.667 5.50 0.00 42.27 3.82
697 779 2.733218 GCTACGCACGAGCACACA 60.733 61.111 5.50 0.00 42.27 3.72
698 780 2.720758 GCTACGCACGAGCACACAG 61.721 63.158 5.50 0.00 42.27 3.66
699 781 1.081442 CTACGCACGAGCACACAGA 60.081 57.895 5.50 0.00 42.27 3.41
700 782 1.067743 CTACGCACGAGCACACAGAG 61.068 60.000 5.50 0.00 42.27 3.35
701 783 3.771491 CGCACGAGCACACAGAGC 61.771 66.667 5.50 0.00 42.27 4.09
702 784 3.771491 GCACGAGCACACAGAGCG 61.771 66.667 0.00 0.00 41.58 5.03
703 785 2.050077 CACGAGCACACAGAGCGA 60.050 61.111 0.00 0.00 37.01 4.93
704 786 2.085262 CACGAGCACACAGAGCGAG 61.085 63.158 0.00 0.00 37.01 5.03
705 787 3.177920 CGAGCACACAGAGCGAGC 61.178 66.667 0.00 0.00 37.01 5.03
706 788 2.048784 GAGCACACAGAGCGAGCA 60.049 61.111 0.00 0.00 37.01 4.26
709 791 2.031516 GCACACAGAGCGAGCACAT 61.032 57.895 0.00 0.00 0.00 3.21
776 858 5.673818 GCAAAGCAAAAGGAACTATAGACGG 60.674 44.000 6.78 0.00 38.49 4.79
787 869 4.884668 ACTATAGACGGAGAGAGAGAGG 57.115 50.000 6.78 0.00 0.00 3.69
788 870 4.228824 ACTATAGACGGAGAGAGAGAGGT 58.771 47.826 6.78 0.00 0.00 3.85
850 944 4.998033 CCTTTAACTTTCGCTTTCCTCTCT 59.002 41.667 0.00 0.00 0.00 3.10
853 947 1.276705 ACTTTCGCTTTCCTCTCTCCC 59.723 52.381 0.00 0.00 0.00 4.30
854 948 1.552792 CTTTCGCTTTCCTCTCTCCCT 59.447 52.381 0.00 0.00 0.00 4.20
855 949 1.187087 TTCGCTTTCCTCTCTCCCTC 58.813 55.000 0.00 0.00 0.00 4.30
856 950 0.684805 TCGCTTTCCTCTCTCCCTCC 60.685 60.000 0.00 0.00 0.00 4.30
857 951 1.819905 GCTTTCCTCTCTCCCTCCG 59.180 63.158 0.00 0.00 0.00 4.63
2217 2407 1.994507 AAGACGATGGCGACCTCGAG 61.995 60.000 23.17 5.13 43.02 4.04
2973 3241 0.034337 TCCGCCTGTACTGAACCAAC 59.966 55.000 0.60 0.00 0.00 3.77
2980 3248 1.142474 GTACTGAACCAACGAACCCG 58.858 55.000 0.00 0.00 42.50 5.28
3026 3295 5.665459 GGTGATAGTAGCCATAGCCATAAG 58.335 45.833 0.00 0.00 41.25 1.73
3122 3407 0.386352 CACGCAGGCAGTTCATGTTG 60.386 55.000 0.00 0.00 0.00 3.33
3140 3425 7.218614 TCATGTTGATTTCCTCTTGCATTTTT 58.781 30.769 0.00 0.00 0.00 1.94
3141 3426 8.366401 TCATGTTGATTTCCTCTTGCATTTTTA 58.634 29.630 0.00 0.00 0.00 1.52
3142 3427 8.653338 CATGTTGATTTCCTCTTGCATTTTTAG 58.347 33.333 0.00 0.00 0.00 1.85
3143 3428 6.646240 TGTTGATTTCCTCTTGCATTTTTAGC 59.354 34.615 0.00 0.00 0.00 3.09
3144 3429 6.343716 TGATTTCCTCTTGCATTTTTAGCA 57.656 33.333 0.00 0.00 40.85 3.49
3161 3446 0.598419 GCATCCTCGTCGCATGATCA 60.598 55.000 0.00 0.00 0.00 2.92
3168 3453 1.949525 TCGTCGCATGATCAGATCAGA 59.050 47.619 18.13 7.84 43.53 3.27
3169 3454 2.555757 TCGTCGCATGATCAGATCAGAT 59.444 45.455 18.13 0.00 43.53 2.90
3170 3455 2.916089 CGTCGCATGATCAGATCAGATC 59.084 50.000 18.13 18.53 43.53 2.75
3179 3464 4.961099 TGATCAGATCAGATCAGTGGTTCT 59.039 41.667 22.78 0.00 46.92 3.01
3180 3465 4.998671 TCAGATCAGATCAGTGGTTCTC 57.001 45.455 13.14 0.00 0.00 2.87
3182 3467 5.022122 TCAGATCAGATCAGTGGTTCTCTT 58.978 41.667 13.14 0.00 0.00 2.85
3183 3468 5.483231 TCAGATCAGATCAGTGGTTCTCTTT 59.517 40.000 13.14 0.00 0.00 2.52
3184 3469 5.811613 CAGATCAGATCAGTGGTTCTCTTTC 59.188 44.000 13.14 0.00 0.00 2.62
3185 3470 5.721000 AGATCAGATCAGTGGTTCTCTTTCT 59.279 40.000 13.14 0.00 0.00 2.52
3186 3471 5.815233 TCAGATCAGTGGTTCTCTTTCTT 57.185 39.130 0.00 0.00 0.00 2.52
3191 3476 6.934083 AGATCAGTGGTTCTCTTTCTTTCTTC 59.066 38.462 0.00 0.00 0.00 2.87
3194 3479 6.540189 TCAGTGGTTCTCTTTCTTTCTTCTTG 59.460 38.462 0.00 0.00 0.00 3.02
3196 3481 6.317391 AGTGGTTCTCTTTCTTTCTTCTTGTG 59.683 38.462 0.00 0.00 0.00 3.33
3213 3498 1.881973 TGTGAAATCAGCAGTTGAGGC 59.118 47.619 0.00 0.00 39.68 4.70
3226 3511 2.142357 TTGAGGCTCTGGACGTGTCG 62.142 60.000 16.72 0.00 0.00 4.35
3227 3512 2.282251 AGGCTCTGGACGTGTCGA 60.282 61.111 0.00 0.00 0.00 4.20
3228 3513 2.126424 GGCTCTGGACGTGTCGAC 60.126 66.667 9.11 9.11 0.00 4.20
3229 3514 2.627737 GGCTCTGGACGTGTCGACT 61.628 63.158 17.92 0.00 0.00 4.18
3230 3515 1.442857 GCTCTGGACGTGTCGACTG 60.443 63.158 17.92 11.77 0.00 3.51
3231 3516 1.950007 CTCTGGACGTGTCGACTGT 59.050 57.895 17.92 15.06 0.00 3.55
3232 3517 0.110147 CTCTGGACGTGTCGACTGTC 60.110 60.000 24.34 24.34 0.00 3.51
3233 3518 1.440518 CTGGACGTGTCGACTGTCG 60.441 63.158 23.33 23.33 42.10 4.35
3241 3526 3.681473 TCGACTGTCGAGTGCCAT 58.319 55.556 27.26 0.00 44.82 4.40
3242 3527 1.212751 TCGACTGTCGAGTGCCATG 59.787 57.895 27.26 0.00 44.82 3.66
3243 3528 2.447887 CGACTGTCGAGTGCCATGC 61.448 63.158 24.86 0.00 43.74 4.06
3244 3529 1.374631 GACTGTCGAGTGCCATGCA 60.375 57.895 0.00 0.00 35.60 3.96
3245 3530 0.742281 GACTGTCGAGTGCCATGCAT 60.742 55.000 0.00 0.00 41.91 3.96
3250 3535 1.205820 CGAGTGCCATGCATATGCG 59.794 57.895 22.21 9.75 45.83 4.73
3283 3568 2.225019 AGCTTGTTGCAATCTTGTCTCG 59.775 45.455 0.59 0.00 45.94 4.04
3284 3569 2.666619 GCTTGTTGCAATCTTGTCTCGG 60.667 50.000 0.59 0.00 42.31 4.63
3313 3626 2.203437 GTGTGGCTCCCCGGTTTT 60.203 61.111 0.00 0.00 0.00 2.43
3314 3627 1.073548 GTGTGGCTCCCCGGTTTTA 59.926 57.895 0.00 0.00 0.00 1.52
3315 3628 0.537828 GTGTGGCTCCCCGGTTTTAA 60.538 55.000 0.00 0.00 0.00 1.52
3316 3629 0.406361 TGTGGCTCCCCGGTTTTAAT 59.594 50.000 0.00 0.00 0.00 1.40
3317 3630 1.634459 TGTGGCTCCCCGGTTTTAATA 59.366 47.619 0.00 0.00 0.00 0.98
3318 3631 2.041350 TGTGGCTCCCCGGTTTTAATAA 59.959 45.455 0.00 0.00 0.00 1.40
3319 3632 3.090790 GTGGCTCCCCGGTTTTAATAAA 58.909 45.455 0.00 0.00 0.00 1.40
3320 3633 3.129813 GTGGCTCCCCGGTTTTAATAAAG 59.870 47.826 0.00 0.00 0.00 1.85
3333 3646 7.372714 GGTTTTAATAAAGAAAGAAAGCCCGA 58.627 34.615 0.00 0.00 0.00 5.14
3376 3689 3.100817 CGCTTTGTGTCAAGTTGTCAAG 58.899 45.455 4.32 0.87 0.00 3.02
3415 3728 3.250040 CCAAACAGGTCGTAGGTCTTTTG 59.750 47.826 0.00 0.00 0.00 2.44
3470 3787 1.001181 CGTTCCGAGTCCCAACCTTTA 59.999 52.381 0.00 0.00 0.00 1.85
3473 3790 1.002773 TCCGAGTCCCAACCTTTAAGC 59.997 52.381 0.00 0.00 0.00 3.09
3674 3991 4.251268 GGAAATTACTAAGTCGGTGTGCT 58.749 43.478 0.00 0.00 0.00 4.40
3675 3992 4.694037 GGAAATTACTAAGTCGGTGTGCTT 59.306 41.667 0.00 0.00 0.00 3.91
3679 4009 0.602638 CTAAGTCGGTGTGCTTGGCA 60.603 55.000 0.00 0.00 35.60 4.92
3751 4117 3.242870 GCTTCATTTTATAGTGCAGCGCT 60.243 43.478 14.22 14.22 0.00 5.92
3779 4145 1.771565 AGGCGCCACACTATACAGTA 58.228 50.000 31.54 0.00 32.21 2.74
3852 4218 2.747460 GATGCAACGCTGGCCAGA 60.747 61.111 37.21 14.99 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.272901 GCTGGAGTTTTTGTTTGTTTTATTTTC 57.727 29.630 0.00 0.00 0.00 2.29
28 29 8.787852 TGCTGGAGTTTTTGTTTGTTTTATTTT 58.212 25.926 0.00 0.00 0.00 1.82
29 30 8.329203 TGCTGGAGTTTTTGTTTGTTTTATTT 57.671 26.923 0.00 0.00 0.00 1.40
30 31 7.913674 TGCTGGAGTTTTTGTTTGTTTTATT 57.086 28.000 0.00 0.00 0.00 1.40
31 32 7.913674 TTGCTGGAGTTTTTGTTTGTTTTAT 57.086 28.000 0.00 0.00 0.00 1.40
32 33 7.730364 TTTGCTGGAGTTTTTGTTTGTTTTA 57.270 28.000 0.00 0.00 0.00 1.52
33 34 6.625873 TTTGCTGGAGTTTTTGTTTGTTTT 57.374 29.167 0.00 0.00 0.00 2.43
34 35 6.625873 TTTTGCTGGAGTTTTTGTTTGTTT 57.374 29.167 0.00 0.00 0.00 2.83
35 36 6.484977 TCTTTTTGCTGGAGTTTTTGTTTGTT 59.515 30.769 0.00 0.00 0.00 2.83
36 37 5.994668 TCTTTTTGCTGGAGTTTTTGTTTGT 59.005 32.000 0.00 0.00 0.00 2.83
37 38 6.479095 TCTTTTTGCTGGAGTTTTTGTTTG 57.521 33.333 0.00 0.00 0.00 2.93
38 39 6.484977 TGTTCTTTTTGCTGGAGTTTTTGTTT 59.515 30.769 0.00 0.00 0.00 2.83
39 40 5.994668 TGTTCTTTTTGCTGGAGTTTTTGTT 59.005 32.000 0.00 0.00 0.00 2.83
40 41 5.546526 TGTTCTTTTTGCTGGAGTTTTTGT 58.453 33.333 0.00 0.00 0.00 2.83
41 42 6.479095 TTGTTCTTTTTGCTGGAGTTTTTG 57.521 33.333 0.00 0.00 0.00 2.44
42 43 6.484977 TGTTTGTTCTTTTTGCTGGAGTTTTT 59.515 30.769 0.00 0.00 0.00 1.94
43 44 5.994668 TGTTTGTTCTTTTTGCTGGAGTTTT 59.005 32.000 0.00 0.00 0.00 2.43
44 45 5.546526 TGTTTGTTCTTTTTGCTGGAGTTT 58.453 33.333 0.00 0.00 0.00 2.66
45 46 5.146010 TGTTTGTTCTTTTTGCTGGAGTT 57.854 34.783 0.00 0.00 0.00 3.01
46 47 4.799564 TGTTTGTTCTTTTTGCTGGAGT 57.200 36.364 0.00 0.00 0.00 3.85
47 48 5.639082 ACTTTGTTTGTTCTTTTTGCTGGAG 59.361 36.000 0.00 0.00 0.00 3.86
48 49 5.546526 ACTTTGTTTGTTCTTTTTGCTGGA 58.453 33.333 0.00 0.00 0.00 3.86
49 50 5.861222 ACTTTGTTTGTTCTTTTTGCTGG 57.139 34.783 0.00 0.00 0.00 4.85
50 51 7.478355 GCTTTACTTTGTTTGTTCTTTTTGCTG 59.522 33.333 0.00 0.00 0.00 4.41
51 52 7.360861 GGCTTTACTTTGTTTGTTCTTTTTGCT 60.361 33.333 0.00 0.00 0.00 3.91
52 53 6.740905 GGCTTTACTTTGTTTGTTCTTTTTGC 59.259 34.615 0.00 0.00 0.00 3.68
53 54 7.801752 TGGCTTTACTTTGTTTGTTCTTTTTG 58.198 30.769 0.00 0.00 0.00 2.44
54 55 7.971183 TGGCTTTACTTTGTTTGTTCTTTTT 57.029 28.000 0.00 0.00 0.00 1.94
55 56 7.971183 TTGGCTTTACTTTGTTTGTTCTTTT 57.029 28.000 0.00 0.00 0.00 2.27
56 57 7.442666 TGTTTGGCTTTACTTTGTTTGTTCTTT 59.557 29.630 0.00 0.00 0.00 2.52
57 58 6.931840 TGTTTGGCTTTACTTTGTTTGTTCTT 59.068 30.769 0.00 0.00 0.00 2.52
58 59 6.459923 TGTTTGGCTTTACTTTGTTTGTTCT 58.540 32.000 0.00 0.00 0.00 3.01
59 60 6.713792 TGTTTGGCTTTACTTTGTTTGTTC 57.286 33.333 0.00 0.00 0.00 3.18
60 61 6.652900 ACATGTTTGGCTTTACTTTGTTTGTT 59.347 30.769 0.00 0.00 0.00 2.83
61 62 6.091986 CACATGTTTGGCTTTACTTTGTTTGT 59.908 34.615 0.00 0.00 0.00 2.83
62 63 6.312426 TCACATGTTTGGCTTTACTTTGTTTG 59.688 34.615 0.00 0.00 0.00 2.93
63 64 6.312672 GTCACATGTTTGGCTTTACTTTGTTT 59.687 34.615 0.00 0.00 0.00 2.83
64 65 5.810074 GTCACATGTTTGGCTTTACTTTGTT 59.190 36.000 0.00 0.00 0.00 2.83
65 66 5.348164 GTCACATGTTTGGCTTTACTTTGT 58.652 37.500 0.00 0.00 0.00 2.83
66 67 4.744631 GGTCACATGTTTGGCTTTACTTTG 59.255 41.667 0.00 0.00 0.00 2.77
67 68 4.649218 AGGTCACATGTTTGGCTTTACTTT 59.351 37.500 0.00 0.00 0.00 2.66
68 69 4.215109 AGGTCACATGTTTGGCTTTACTT 58.785 39.130 0.00 0.00 0.00 2.24
69 70 3.832527 AGGTCACATGTTTGGCTTTACT 58.167 40.909 0.00 0.00 0.00 2.24
70 71 4.517453 TGTAGGTCACATGTTTGGCTTTAC 59.483 41.667 0.00 0.00 30.04 2.01
71 72 4.720046 TGTAGGTCACATGTTTGGCTTTA 58.280 39.130 0.00 0.00 30.04 1.85
72 73 3.561143 TGTAGGTCACATGTTTGGCTTT 58.439 40.909 0.00 0.00 30.04 3.51
73 74 3.222173 TGTAGGTCACATGTTTGGCTT 57.778 42.857 0.00 0.00 30.04 4.35
74 75 2.884639 GTTGTAGGTCACATGTTTGGCT 59.115 45.455 0.00 0.00 36.90 4.75
75 76 2.884639 AGTTGTAGGTCACATGTTTGGC 59.115 45.455 0.00 0.00 36.90 4.52
76 77 6.349280 CCATAAGTTGTAGGTCACATGTTTGG 60.349 42.308 0.00 0.00 36.90 3.28
77 78 6.611381 CCATAAGTTGTAGGTCACATGTTTG 58.389 40.000 0.00 0.00 36.90 2.93
78 79 5.183140 GCCATAAGTTGTAGGTCACATGTTT 59.817 40.000 0.00 0.00 36.90 2.83
79 80 4.700213 GCCATAAGTTGTAGGTCACATGTT 59.300 41.667 0.00 0.00 36.90 2.71
80 81 4.261801 GCCATAAGTTGTAGGTCACATGT 58.738 43.478 0.00 0.00 36.90 3.21
81 82 3.627577 GGCCATAAGTTGTAGGTCACATG 59.372 47.826 0.00 0.00 36.90 3.21
82 83 3.371595 GGGCCATAAGTTGTAGGTCACAT 60.372 47.826 4.39 0.00 36.90 3.21
83 84 2.026636 GGGCCATAAGTTGTAGGTCACA 60.027 50.000 4.39 0.00 34.51 3.58
84 85 2.026636 TGGGCCATAAGTTGTAGGTCAC 60.027 50.000 0.00 0.00 0.00 3.67
85 86 2.270858 TGGGCCATAAGTTGTAGGTCA 58.729 47.619 0.00 0.00 0.00 4.02
86 87 3.214328 CATGGGCCATAAGTTGTAGGTC 58.786 50.000 20.73 0.00 0.00 3.85
87 88 2.686715 GCATGGGCCATAAGTTGTAGGT 60.687 50.000 20.73 0.00 0.00 3.08
88 89 1.956477 GCATGGGCCATAAGTTGTAGG 59.044 52.381 20.73 4.41 0.00 3.18
89 90 2.620115 CTGCATGGGCCATAAGTTGTAG 59.380 50.000 20.73 13.15 40.13 2.74
90 91 2.653726 CTGCATGGGCCATAAGTTGTA 58.346 47.619 20.73 6.70 40.13 2.41
91 92 1.477553 CTGCATGGGCCATAAGTTGT 58.522 50.000 20.73 0.00 40.13 3.32
92 93 0.748450 CCTGCATGGGCCATAAGTTG 59.252 55.000 20.73 9.43 40.13 3.16
93 94 0.630673 TCCTGCATGGGCCATAAGTT 59.369 50.000 20.73 0.00 40.13 2.66
94 95 0.630673 TTCCTGCATGGGCCATAAGT 59.369 50.000 20.73 0.00 40.13 2.24
95 96 1.410153 GTTTCCTGCATGGGCCATAAG 59.590 52.381 20.73 18.77 40.13 1.73
96 97 1.484038 GTTTCCTGCATGGGCCATAA 58.516 50.000 20.73 9.85 40.13 1.90
97 98 0.751277 CGTTTCCTGCATGGGCCATA 60.751 55.000 20.73 3.33 40.13 2.74
98 99 2.053865 CGTTTCCTGCATGGGCCAT 61.054 57.895 14.78 14.78 40.13 4.40
99 100 2.676121 CGTTTCCTGCATGGGCCA 60.676 61.111 9.61 9.61 40.13 5.36
100 101 3.451894 CCGTTTCCTGCATGGGCC 61.452 66.667 0.00 0.00 40.13 5.80
101 102 4.133796 GCCGTTTCCTGCATGGGC 62.134 66.667 0.00 0.00 41.68 5.36
102 103 2.676121 TGCCGTTTCCTGCATGGG 60.676 61.111 0.00 0.00 36.20 4.00
103 104 1.804396 TTGTGCCGTTTCCTGCATGG 61.804 55.000 0.00 0.00 40.07 3.66
104 105 0.031857 TTTGTGCCGTTTCCTGCATG 59.968 50.000 0.00 0.00 40.07 4.06
105 106 0.749649 TTTTGTGCCGTTTCCTGCAT 59.250 45.000 0.00 0.00 40.07 3.96
106 107 0.102120 CTTTTGTGCCGTTTCCTGCA 59.898 50.000 0.00 0.00 34.54 4.41
107 108 0.383949 TCTTTTGTGCCGTTTCCTGC 59.616 50.000 0.00 0.00 0.00 4.85
108 109 2.731217 CTTCTTTTGTGCCGTTTCCTG 58.269 47.619 0.00 0.00 0.00 3.86
109 110 1.067060 GCTTCTTTTGTGCCGTTTCCT 59.933 47.619 0.00 0.00 0.00 3.36
110 111 1.487482 GCTTCTTTTGTGCCGTTTCC 58.513 50.000 0.00 0.00 0.00 3.13
111 112 1.487482 GGCTTCTTTTGTGCCGTTTC 58.513 50.000 0.00 0.00 37.11 2.78
112 113 0.104120 GGGCTTCTTTTGTGCCGTTT 59.896 50.000 0.00 0.00 46.97 3.60
113 114 1.040339 TGGGCTTCTTTTGTGCCGTT 61.040 50.000 0.00 0.00 46.97 4.44
114 115 1.454847 TGGGCTTCTTTTGTGCCGT 60.455 52.632 0.00 0.00 46.97 5.68
115 116 1.007387 GTGGGCTTCTTTTGTGCCG 60.007 57.895 0.00 0.00 46.97 5.69
116 117 1.367471 GGTGGGCTTCTTTTGTGCC 59.633 57.895 0.00 0.00 45.42 5.01
117 118 0.032540 CTGGTGGGCTTCTTTTGTGC 59.967 55.000 0.00 0.00 0.00 4.57
118 119 0.032540 GCTGGTGGGCTTCTTTTGTG 59.967 55.000 0.00 0.00 0.00 3.33
119 120 0.106015 AGCTGGTGGGCTTCTTTTGT 60.106 50.000 0.00 0.00 39.86 2.83
120 121 1.541588 GTAGCTGGTGGGCTTCTTTTG 59.458 52.381 0.00 0.00 42.97 2.44
121 122 1.547901 GGTAGCTGGTGGGCTTCTTTT 60.548 52.381 0.00 0.00 42.97 2.27
122 123 0.038310 GGTAGCTGGTGGGCTTCTTT 59.962 55.000 0.00 0.00 42.97 2.52
123 124 1.685820 GGTAGCTGGTGGGCTTCTT 59.314 57.895 0.00 0.00 42.97 2.52
124 125 2.301738 GGGTAGCTGGTGGGCTTCT 61.302 63.158 0.00 0.00 42.97 2.85
125 126 0.981277 TAGGGTAGCTGGTGGGCTTC 60.981 60.000 0.00 0.00 42.97 3.86
126 127 0.549169 TTAGGGTAGCTGGTGGGCTT 60.549 55.000 0.00 0.00 42.97 4.35
127 128 0.549169 TTTAGGGTAGCTGGTGGGCT 60.549 55.000 0.00 0.00 45.29 5.19
128 129 0.330267 TTTTAGGGTAGCTGGTGGGC 59.670 55.000 0.00 0.00 0.00 5.36
129 130 2.891191 TTTTTAGGGTAGCTGGTGGG 57.109 50.000 0.00 0.00 0.00 4.61
147 148 1.903404 CTCCGCTGGTGGGCTTTTT 60.903 57.895 0.07 0.00 0.00 1.94
148 149 2.282462 CTCCGCTGGTGGGCTTTT 60.282 61.111 0.07 0.00 0.00 2.27
149 150 2.351924 TTTCTCCGCTGGTGGGCTTT 62.352 55.000 0.07 0.00 0.00 3.51
150 151 2.351924 TTTTCTCCGCTGGTGGGCTT 62.352 55.000 0.07 0.00 0.00 4.35
151 152 2.351924 TTTTTCTCCGCTGGTGGGCT 62.352 55.000 0.07 0.00 0.00 5.19
152 153 1.901464 TTTTTCTCCGCTGGTGGGC 60.901 57.895 0.07 0.00 0.00 5.36
153 154 4.492604 TTTTTCTCCGCTGGTGGG 57.507 55.556 0.07 0.00 0.00 4.61
169 170 2.100749 CACCGTCTCCTTTTGCCTTTTT 59.899 45.455 0.00 0.00 0.00 1.94
170 171 1.681264 CACCGTCTCCTTTTGCCTTTT 59.319 47.619 0.00 0.00 0.00 2.27
171 172 1.318576 CACCGTCTCCTTTTGCCTTT 58.681 50.000 0.00 0.00 0.00 3.11
172 173 1.172812 GCACCGTCTCCTTTTGCCTT 61.173 55.000 0.00 0.00 0.00 4.35
173 174 1.600916 GCACCGTCTCCTTTTGCCT 60.601 57.895 0.00 0.00 0.00 4.75
174 175 2.954611 GCACCGTCTCCTTTTGCC 59.045 61.111 0.00 0.00 0.00 4.52
175 176 2.556287 CGCACCGTCTCCTTTTGC 59.444 61.111 0.00 0.00 0.00 3.68
176 177 2.966309 GCCGCACCGTCTCCTTTTG 61.966 63.158 0.00 0.00 0.00 2.44
177 178 2.668550 GCCGCACCGTCTCCTTTT 60.669 61.111 0.00 0.00 0.00 2.27
178 179 4.699522 GGCCGCACCGTCTCCTTT 62.700 66.667 0.00 0.00 0.00 3.11
194 195 3.357079 GTTGGTCAGCTGGTGCGG 61.357 66.667 15.13 0.00 45.42 5.69
195 196 2.186160 TTGTTGGTCAGCTGGTGCG 61.186 57.895 15.13 0.00 45.42 5.34
196 197 1.360192 GTTGTTGGTCAGCTGGTGC 59.640 57.895 15.13 4.59 40.05 5.01
197 198 1.648720 CGTTGTTGGTCAGCTGGTG 59.351 57.895 15.13 0.00 0.00 4.17
198 199 2.186826 GCGTTGTTGGTCAGCTGGT 61.187 57.895 15.13 0.00 0.00 4.00
199 200 2.639286 GCGTTGTTGGTCAGCTGG 59.361 61.111 15.13 0.00 0.00 4.85
200 201 2.249309 CGCGTTGTTGGTCAGCTG 59.751 61.111 7.63 7.63 0.00 4.24
201 202 2.203015 ACGCGTTGTTGGTCAGCT 60.203 55.556 5.58 0.00 0.00 4.24
202 203 2.052237 CACGCGTTGTTGGTCAGC 60.052 61.111 10.22 0.00 0.00 4.26
203 204 2.052237 GCACGCGTTGTTGGTCAG 60.052 61.111 10.22 0.00 0.00 3.51
204 205 3.931130 CGCACGCGTTGTTGGTCA 61.931 61.111 10.22 0.00 34.35 4.02
214 215 3.543268 GACTGTGTTGACGCACGCG 62.543 63.158 10.36 10.36 41.94 6.01
215 216 2.245532 GACTGTGTTGACGCACGC 59.754 61.111 0.00 0.00 41.94 5.34
216 217 2.539503 CGACTGTGTTGACGCACG 59.460 61.111 0.00 0.00 41.94 5.34
217 218 2.245532 GCGACTGTGTTGACGCAC 59.754 61.111 0.00 0.00 46.55 5.34
220 221 1.846648 GAGTGCGACTGTGTTGACG 59.153 57.895 0.00 0.00 0.00 4.35
221 222 0.870307 ACGAGTGCGACTGTGTTGAC 60.870 55.000 0.00 0.00 41.64 3.18
222 223 0.664224 TACGAGTGCGACTGTGTTGA 59.336 50.000 0.00 0.00 41.64 3.18
223 224 0.776451 GTACGAGTGCGACTGTGTTG 59.224 55.000 0.00 0.00 41.64 3.33
224 225 0.659417 CGTACGAGTGCGACTGTGTT 60.659 55.000 10.44 0.00 41.16 3.32
225 226 1.082300 CGTACGAGTGCGACTGTGT 60.082 57.895 10.44 0.00 41.16 3.72
226 227 1.082300 ACGTACGAGTGCGACTGTG 60.082 57.895 24.41 0.00 41.16 3.66
227 228 1.082300 CACGTACGAGTGCGACTGT 60.082 57.895 24.41 0.00 41.16 3.55
228 229 1.796355 CCACGTACGAGTGCGACTG 60.796 63.158 24.41 6.77 41.16 3.51
229 230 2.559840 CCACGTACGAGTGCGACT 59.440 61.111 24.41 0.00 41.16 4.18
230 231 2.503375 CCCACGTACGAGTGCGAC 60.503 66.667 24.41 0.00 41.16 5.19
231 232 4.409218 GCCCACGTACGAGTGCGA 62.409 66.667 24.41 0.00 41.16 5.10
232 233 4.710695 TGCCCACGTACGAGTGCG 62.711 66.667 24.41 11.86 44.18 5.34
233 234 2.356553 TTGCCCACGTACGAGTGC 60.357 61.111 24.41 17.94 40.59 4.40
234 235 0.241749 TACTTGCCCACGTACGAGTG 59.758 55.000 24.41 10.77 41.53 3.51
235 236 0.242017 GTACTTGCCCACGTACGAGT 59.758 55.000 24.41 15.75 34.81 4.18
236 237 0.524862 AGTACTTGCCCACGTACGAG 59.475 55.000 24.41 14.76 39.93 4.18
237 238 1.819928 TAGTACTTGCCCACGTACGA 58.180 50.000 24.41 0.00 39.93 3.43
238 239 2.634982 TTAGTACTTGCCCACGTACG 57.365 50.000 15.01 15.01 39.93 3.67
239 240 3.619929 CCATTTAGTACTTGCCCACGTAC 59.380 47.826 0.00 6.89 36.61 3.67
240 241 3.864243 CCATTTAGTACTTGCCCACGTA 58.136 45.455 0.00 0.00 0.00 3.57
241 242 2.706890 CCATTTAGTACTTGCCCACGT 58.293 47.619 0.00 0.00 0.00 4.49
242 243 1.400494 GCCATTTAGTACTTGCCCACG 59.600 52.381 0.00 0.00 0.00 4.94
243 244 2.163613 GTGCCATTTAGTACTTGCCCAC 59.836 50.000 0.00 0.52 0.00 4.61
244 245 2.442413 GTGCCATTTAGTACTTGCCCA 58.558 47.619 0.00 0.00 0.00 5.36
245 246 1.400494 CGTGCCATTTAGTACTTGCCC 59.600 52.381 0.00 0.00 0.00 5.36
246 247 2.352388 TCGTGCCATTTAGTACTTGCC 58.648 47.619 0.00 0.00 0.00 4.52
247 248 4.616181 ATTCGTGCCATTTAGTACTTGC 57.384 40.909 0.00 0.00 0.00 4.01
253 254 8.736244 ACAGTTATAAAATTCGTGCCATTTAGT 58.264 29.630 0.00 0.00 0.00 2.24
254 255 9.567848 AACAGTTATAAAATTCGTGCCATTTAG 57.432 29.630 0.00 0.00 0.00 1.85
256 257 9.915629 TTAACAGTTATAAAATTCGTGCCATTT 57.084 25.926 0.00 0.00 0.00 2.32
257 258 9.915629 TTTAACAGTTATAAAATTCGTGCCATT 57.084 25.926 0.00 0.00 0.00 3.16
259 260 9.347934 CATTTAACAGTTATAAAATTCGTGCCA 57.652 29.630 0.00 0.00 0.00 4.92
260 261 9.349145 ACATTTAACAGTTATAAAATTCGTGCC 57.651 29.630 0.00 0.00 0.00 5.01
267 268 9.921637 CCACCACACATTTAACAGTTATAAAAT 57.078 29.630 0.00 0.00 0.00 1.82
268 269 9.132923 TCCACCACACATTTAACAGTTATAAAA 57.867 29.630 0.00 0.00 0.00 1.52
269 270 8.693120 TCCACCACACATTTAACAGTTATAAA 57.307 30.769 0.00 0.00 0.00 1.40
270 271 8.735315 CATCCACCACACATTTAACAGTTATAA 58.265 33.333 0.00 0.00 0.00 0.98
271 272 8.103935 TCATCCACCACACATTTAACAGTTATA 58.896 33.333 0.00 0.00 0.00 0.98
272 273 6.945435 TCATCCACCACACATTTAACAGTTAT 59.055 34.615 0.00 0.00 0.00 1.89
273 274 6.205853 GTCATCCACCACACATTTAACAGTTA 59.794 38.462 0.00 0.00 0.00 2.24
274 275 5.009610 GTCATCCACCACACATTTAACAGTT 59.990 40.000 0.00 0.00 0.00 3.16
275 276 4.518970 GTCATCCACCACACATTTAACAGT 59.481 41.667 0.00 0.00 0.00 3.55
276 277 4.761739 AGTCATCCACCACACATTTAACAG 59.238 41.667 0.00 0.00 0.00 3.16
277 278 4.724399 AGTCATCCACCACACATTTAACA 58.276 39.130 0.00 0.00 0.00 2.41
278 279 5.705609 AAGTCATCCACCACACATTTAAC 57.294 39.130 0.00 0.00 0.00 2.01
279 280 6.774673 TCTAAGTCATCCACCACACATTTAA 58.225 36.000 0.00 0.00 0.00 1.52
280 281 6.367374 TCTAAGTCATCCACCACACATTTA 57.633 37.500 0.00 0.00 0.00 1.40
281 282 5.241403 TCTAAGTCATCCACCACACATTT 57.759 39.130 0.00 0.00 0.00 2.32
282 283 4.908601 TCTAAGTCATCCACCACACATT 57.091 40.909 0.00 0.00 0.00 2.71
283 284 4.225942 ACATCTAAGTCATCCACCACACAT 59.774 41.667 0.00 0.00 0.00 3.21
284 285 3.582647 ACATCTAAGTCATCCACCACACA 59.417 43.478 0.00 0.00 0.00 3.72
285 286 3.935203 CACATCTAAGTCATCCACCACAC 59.065 47.826 0.00 0.00 0.00 3.82
286 287 3.837731 TCACATCTAAGTCATCCACCACA 59.162 43.478 0.00 0.00 0.00 4.17
287 288 4.184629 GTCACATCTAAGTCATCCACCAC 58.815 47.826 0.00 0.00 0.00 4.16
288 289 3.837731 TGTCACATCTAAGTCATCCACCA 59.162 43.478 0.00 0.00 0.00 4.17
289 290 4.471904 TGTCACATCTAAGTCATCCACC 57.528 45.455 0.00 0.00 0.00 4.61
290 291 6.810911 ACTATGTCACATCTAAGTCATCCAC 58.189 40.000 0.00 0.00 0.00 4.02
291 292 7.423844 AACTATGTCACATCTAAGTCATCCA 57.576 36.000 0.00 0.00 0.00 3.41
292 293 9.988815 AATAACTATGTCACATCTAAGTCATCC 57.011 33.333 0.00 0.00 0.00 3.51
301 302 9.685276 TGGATGAAAAATAACTATGTCACATCT 57.315 29.630 0.00 0.00 33.43 2.90
302 303 9.941664 CTGGATGAAAAATAACTATGTCACATC 57.058 33.333 0.00 0.00 0.00 3.06
303 304 9.685276 TCTGGATGAAAAATAACTATGTCACAT 57.315 29.630 0.00 0.00 0.00 3.21
304 305 9.685276 ATCTGGATGAAAAATAACTATGTCACA 57.315 29.630 0.00 0.00 0.00 3.58
305 306 9.941664 CATCTGGATGAAAAATAACTATGTCAC 57.058 33.333 4.72 0.00 41.20 3.67
306 307 9.685276 ACATCTGGATGAAAAATAACTATGTCA 57.315 29.630 16.27 0.00 41.20 3.58
307 308 9.941664 CACATCTGGATGAAAAATAACTATGTC 57.058 33.333 16.27 0.00 41.20 3.06
308 309 9.466497 ACACATCTGGATGAAAAATAACTATGT 57.534 29.630 16.27 4.04 41.20 2.29
316 317 8.859090 TGACTAAAACACATCTGGATGAAAAAT 58.141 29.630 16.27 3.74 41.20 1.82
317 318 8.231692 TGACTAAAACACATCTGGATGAAAAA 57.768 30.769 16.27 0.00 41.20 1.94
318 319 7.815840 TGACTAAAACACATCTGGATGAAAA 57.184 32.000 16.27 0.00 41.20 2.29
319 320 7.815840 TTGACTAAAACACATCTGGATGAAA 57.184 32.000 16.27 0.00 41.20 2.69
320 321 7.884877 AGATTGACTAAAACACATCTGGATGAA 59.115 33.333 16.27 0.00 41.20 2.57
321 322 7.335171 CAGATTGACTAAAACACATCTGGATGA 59.665 37.037 16.27 0.00 41.20 2.92
322 323 7.120285 ACAGATTGACTAAAACACATCTGGATG 59.880 37.037 8.81 8.81 44.15 3.51
323 324 7.170965 ACAGATTGACTAAAACACATCTGGAT 58.829 34.615 10.80 0.00 38.73 3.41
324 325 6.533730 ACAGATTGACTAAAACACATCTGGA 58.466 36.000 10.80 0.00 38.73 3.86
325 326 6.808008 ACAGATTGACTAAAACACATCTGG 57.192 37.500 10.80 0.00 38.73 3.86
326 327 9.520204 AAAAACAGATTGACTAAAACACATCTG 57.480 29.630 5.60 5.60 39.87 2.90
359 360 1.925847 GAGAAATGCTCTGCTCTCACG 59.074 52.381 0.00 0.00 40.61 4.35
425 438 1.679898 GCTACACAGCTTCCCACCT 59.320 57.895 0.00 0.00 44.93 4.00
442 460 1.521450 TTGCTCTTTCCTGCTGCAGC 61.521 55.000 31.89 31.89 42.50 5.25
443 461 0.956633 TTTGCTCTTTCCTGCTGCAG 59.043 50.000 22.44 22.44 35.02 4.41
444 462 1.338973 CTTTTGCTCTTTCCTGCTGCA 59.661 47.619 0.88 0.88 0.00 4.41
466 484 1.973515 TGACCAACATGCACTCTCTCT 59.026 47.619 0.00 0.00 0.00 3.10
467 485 2.072298 GTGACCAACATGCACTCTCTC 58.928 52.381 0.00 0.00 0.00 3.20
468 486 1.606480 CGTGACCAACATGCACTCTCT 60.606 52.381 0.00 0.00 0.00 3.10
469 487 0.792640 CGTGACCAACATGCACTCTC 59.207 55.000 0.00 0.00 0.00 3.20
548 583 0.927994 TTGCGCGCGTTCTTCTTTTG 60.928 50.000 32.35 0.00 0.00 2.44
554 589 4.012895 CACCTTGCGCGCGTTCTT 62.013 61.111 32.35 9.52 0.00 2.52
596 632 6.033341 GTGATTATTTGCGAATAACCTTGCA 58.967 36.000 19.26 10.85 39.75 4.08
597 633 5.458779 GGTGATTATTTGCGAATAACCTTGC 59.541 40.000 19.26 9.44 39.75 4.01
598 634 6.795399 AGGTGATTATTTGCGAATAACCTTG 58.205 36.000 19.26 0.00 39.75 3.61
599 635 7.404671 AAGGTGATTATTTGCGAATAACCTT 57.595 32.000 24.07 24.07 39.45 3.50
659 741 1.277557 GTCCCTCTCACATTCTGCACT 59.722 52.381 0.00 0.00 0.00 4.40
660 742 1.731720 GTCCCTCTCACATTCTGCAC 58.268 55.000 0.00 0.00 0.00 4.57
661 743 0.247460 CGTCCCTCTCACATTCTGCA 59.753 55.000 0.00 0.00 0.00 4.41
662 744 1.086634 GCGTCCCTCTCACATTCTGC 61.087 60.000 0.00 0.00 0.00 4.26
687 769 2.256764 CTCGCTCTGTGTGCTCGT 59.743 61.111 0.00 0.00 0.00 4.18
690 772 2.356793 GTGCTCGCTCTGTGTGCT 60.357 61.111 6.70 0.00 34.31 4.40
692 774 0.994995 GTATGTGCTCGCTCTGTGTG 59.005 55.000 0.00 0.00 0.00 3.82
693 775 0.603065 TGTATGTGCTCGCTCTGTGT 59.397 50.000 0.00 0.00 0.00 3.72
695 777 2.341257 CTTTGTATGTGCTCGCTCTGT 58.659 47.619 0.00 0.00 0.00 3.41
696 778 1.061711 GCTTTGTATGTGCTCGCTCTG 59.938 52.381 0.00 0.00 0.00 3.35
697 779 1.338105 TGCTTTGTATGTGCTCGCTCT 60.338 47.619 0.00 0.00 0.00 4.09
698 780 1.078709 TGCTTTGTATGTGCTCGCTC 58.921 50.000 0.00 0.00 0.00 5.03
699 781 1.197721 GTTGCTTTGTATGTGCTCGCT 59.802 47.619 0.00 0.00 0.00 4.93
700 782 1.069296 TGTTGCTTTGTATGTGCTCGC 60.069 47.619 0.00 0.00 0.00 5.03
701 783 2.967459 TGTTGCTTTGTATGTGCTCG 57.033 45.000 0.00 0.00 0.00 5.03
702 784 2.982470 GCTTGTTGCTTTGTATGTGCTC 59.018 45.455 0.00 0.00 38.95 4.26
703 785 2.605338 CGCTTGTTGCTTTGTATGTGCT 60.605 45.455 0.00 0.00 40.11 4.40
704 786 1.715519 CGCTTGTTGCTTTGTATGTGC 59.284 47.619 0.00 0.00 40.11 4.57
705 787 3.228749 CTCGCTTGTTGCTTTGTATGTG 58.771 45.455 0.00 0.00 40.11 3.21
706 788 2.350772 GCTCGCTTGTTGCTTTGTATGT 60.351 45.455 0.00 0.00 40.11 2.29
709 791 0.591170 GGCTCGCTTGTTGCTTTGTA 59.409 50.000 0.00 0.00 40.11 2.41
776 858 1.299541 CGCTCTCACCTCTCTCTCTC 58.700 60.000 0.00 0.00 0.00 3.20
853 947 0.675522 TTTTTAGAAGGGGCGCGGAG 60.676 55.000 8.83 0.00 0.00 4.63
854 948 0.956902 GTTTTTAGAAGGGGCGCGGA 60.957 55.000 8.83 0.00 0.00 5.54
855 949 1.504900 GTTTTTAGAAGGGGCGCGG 59.495 57.895 8.83 0.00 0.00 6.46
856 950 1.504900 GGTTTTTAGAAGGGGCGCG 59.495 57.895 0.00 0.00 0.00 6.86
857 951 1.504900 CGGTTTTTAGAAGGGGCGC 59.495 57.895 0.00 0.00 0.00 6.53
904 998 3.003173 TGGTTCTGGGAGGAGCGG 61.003 66.667 0.00 0.00 0.00 5.52
906 1000 1.904032 CTCTGGTTCTGGGAGGAGC 59.096 63.158 0.00 0.00 0.00 4.70
935 1029 4.025401 CACAGCGCCCCAACGTTC 62.025 66.667 2.29 0.00 34.88 3.95
944 1038 4.664677 ACGTCACCTCACAGCGCC 62.665 66.667 2.29 0.00 0.00 6.53
1035 1140 2.738521 CTGGTGACGTTGGAGCGG 60.739 66.667 0.00 0.00 35.98 5.52
1077 1185 2.617274 GGTGCAGAAGCCGGTGAAC 61.617 63.158 1.90 0.00 41.13 3.18
1164 1272 4.873129 CGGATGGCGGACGTGGAG 62.873 72.222 0.00 0.00 0.00 3.86
1968 2116 4.224274 AAACGCGGGTCGGTGTCA 62.224 61.111 12.47 0.00 43.86 3.58
3026 3295 7.545489 AGCTTAGTACAATACTACACCAAGAC 58.455 38.462 0.00 0.00 40.74 3.01
3122 3407 6.478016 GGATGCTAAAAATGCAAGAGGAAATC 59.522 38.462 0.00 0.00 44.01 2.17
3140 3425 0.961753 ATCATGCGACGAGGATGCTA 59.038 50.000 0.00 0.00 46.65 3.49
3141 3426 0.319383 GATCATGCGACGAGGATGCT 60.319 55.000 0.00 0.00 46.65 3.79
3142 3427 0.598419 TGATCATGCGACGAGGATGC 60.598 55.000 0.00 1.79 46.65 3.91
3144 3429 1.322442 TCTGATCATGCGACGAGGAT 58.678 50.000 0.00 0.00 0.00 3.24
3161 3446 5.721000 AGAAAGAGAACCACTGATCTGATCT 59.279 40.000 17.82 4.53 0.00 2.75
3168 3453 6.836242 AGAAGAAAGAAAGAGAACCACTGAT 58.164 36.000 0.00 0.00 0.00 2.90
3169 3454 6.240549 AGAAGAAAGAAAGAGAACCACTGA 57.759 37.500 0.00 0.00 0.00 3.41
3170 3455 6.317391 ACAAGAAGAAAGAAAGAGAACCACTG 59.683 38.462 0.00 0.00 0.00 3.66
3171 3456 6.317391 CACAAGAAGAAAGAAAGAGAACCACT 59.683 38.462 0.00 0.00 0.00 4.00
3174 3459 6.927294 TCACAAGAAGAAAGAAAGAGAACC 57.073 37.500 0.00 0.00 0.00 3.62
3179 3464 7.067372 TGCTGATTTCACAAGAAGAAAGAAAGA 59.933 33.333 0.00 0.00 38.27 2.52
3180 3465 7.198390 TGCTGATTTCACAAGAAGAAAGAAAG 58.802 34.615 0.00 0.00 38.27 2.62
3182 3467 6.319658 ACTGCTGATTTCACAAGAAGAAAGAA 59.680 34.615 0.00 0.00 38.27 2.52
3183 3468 5.824624 ACTGCTGATTTCACAAGAAGAAAGA 59.175 36.000 0.00 0.00 38.27 2.52
3184 3469 6.069684 ACTGCTGATTTCACAAGAAGAAAG 57.930 37.500 0.00 0.00 38.27 2.62
3185 3470 6.095300 TCAACTGCTGATTTCACAAGAAGAAA 59.905 34.615 0.00 0.00 39.11 2.52
3186 3471 5.589855 TCAACTGCTGATTTCACAAGAAGAA 59.410 36.000 0.00 0.00 34.71 2.52
3191 3476 3.611057 GCCTCAACTGCTGATTTCACAAG 60.611 47.826 0.00 0.00 32.14 3.16
3194 3479 2.157738 AGCCTCAACTGCTGATTTCAC 58.842 47.619 0.00 0.00 37.76 3.18
3196 3481 2.419324 CAGAGCCTCAACTGCTGATTTC 59.581 50.000 0.00 0.00 39.69 2.17
3213 3498 0.110147 GACAGTCGACACGTCCAGAG 60.110 60.000 19.50 0.00 0.00 3.35
3226 3511 0.742281 ATGCATGGCACTCGACAGTC 60.742 55.000 0.00 0.00 43.04 3.51
3227 3512 0.536724 TATGCATGGCACTCGACAGT 59.463 50.000 10.16 0.00 43.04 3.55
3228 3513 1.529865 CATATGCATGGCACTCGACAG 59.470 52.381 10.16 0.00 43.04 3.51
3229 3514 1.585297 CATATGCATGGCACTCGACA 58.415 50.000 10.16 0.00 43.04 4.35
3230 3515 0.236711 GCATATGCATGGCACTCGAC 59.763 55.000 22.84 0.00 43.04 4.20
3231 3516 1.223417 CGCATATGCATGGCACTCGA 61.223 55.000 26.52 0.00 43.04 4.04
3232 3517 1.205820 CGCATATGCATGGCACTCG 59.794 57.895 26.52 3.88 43.04 4.18
3233 3518 1.195448 GTACGCATATGCATGGCACTC 59.805 52.381 26.52 4.98 43.04 3.51
3234 3519 1.229428 GTACGCATATGCATGGCACT 58.771 50.000 26.52 10.31 43.04 4.40
3235 3520 0.110688 CGTACGCATATGCATGGCAC 60.111 55.000 26.52 14.31 43.04 5.01
3236 3521 0.249657 TCGTACGCATATGCATGGCA 60.250 50.000 26.52 5.10 44.86 4.92
3237 3522 0.439985 CTCGTACGCATATGCATGGC 59.560 55.000 26.52 12.15 42.21 4.40
3238 3523 1.070821 CCTCGTACGCATATGCATGG 58.929 55.000 26.52 13.36 42.21 3.66
3239 3524 0.439985 GCCTCGTACGCATATGCATG 59.560 55.000 26.52 14.07 42.21 4.06
3240 3525 0.033366 TGCCTCGTACGCATATGCAT 59.967 50.000 26.52 15.35 42.21 3.96
3241 3526 0.874175 GTGCCTCGTACGCATATGCA 60.874 55.000 26.52 11.17 42.21 3.96
3242 3527 1.853319 GTGCCTCGTACGCATATGC 59.147 57.895 18.08 18.08 38.76 3.14
3243 3528 0.317519 TCGTGCCTCGTACGCATATG 60.318 55.000 11.24 0.00 41.09 1.78
3244 3529 0.040336 CTCGTGCCTCGTACGCATAT 60.040 55.000 11.24 0.00 41.09 1.78
3245 3530 1.354155 CTCGTGCCTCGTACGCATA 59.646 57.895 11.24 0.00 41.09 3.14
3250 3535 0.666577 AACAAGCTCGTGCCTCGTAC 60.667 55.000 5.73 0.00 40.80 3.67
3283 3568 0.678048 GCCACACCCAGAATCAGACC 60.678 60.000 0.00 0.00 0.00 3.85
3284 3569 0.326264 AGCCACACCCAGAATCAGAC 59.674 55.000 0.00 0.00 0.00 3.51
3313 3626 4.093850 GCGTCGGGCTTTCTTTCTTTATTA 59.906 41.667 0.00 0.00 39.11 0.98
3314 3627 3.119955 GCGTCGGGCTTTCTTTCTTTATT 60.120 43.478 0.00 0.00 39.11 1.40
3315 3628 2.418976 GCGTCGGGCTTTCTTTCTTTAT 59.581 45.455 0.00 0.00 39.11 1.40
3316 3629 1.802365 GCGTCGGGCTTTCTTTCTTTA 59.198 47.619 0.00 0.00 39.11 1.85
3317 3630 0.591659 GCGTCGGGCTTTCTTTCTTT 59.408 50.000 0.00 0.00 39.11 2.52
3318 3631 0.534203 TGCGTCGGGCTTTCTTTCTT 60.534 50.000 0.00 0.00 44.05 2.52
3319 3632 1.070786 TGCGTCGGGCTTTCTTTCT 59.929 52.632 0.00 0.00 44.05 2.52
3320 3633 1.206831 GTGCGTCGGGCTTTCTTTC 59.793 57.895 0.00 0.00 44.05 2.62
3344 3657 2.025156 CAAAGCGATGATGCCGGC 59.975 61.111 22.73 22.73 34.65 6.13
3395 3708 3.473625 CCAAAAGACCTACGACCTGTTT 58.526 45.455 0.00 0.00 0.00 2.83
3396 3709 2.809299 GCCAAAAGACCTACGACCTGTT 60.809 50.000 0.00 0.00 0.00 3.16
3415 3728 1.154035 CGCACGATTGAAAAGGGCC 60.154 57.895 0.00 0.00 0.00 5.80
3451 3768 2.845363 TAAAGGTTGGGACTCGGAAC 57.155 50.000 0.00 0.00 0.00 3.62
3470 3787 6.650390 AGGTCAAATTTATCAATTTTGCGCTT 59.350 30.769 9.73 0.00 40.09 4.68
3473 3790 8.459521 TGTAGGTCAAATTTATCAATTTTGCG 57.540 30.769 0.00 0.00 40.09 4.85
3531 3848 2.095919 GTCAGCCGCGTGAAATAGTTTT 60.096 45.455 4.92 0.00 0.00 2.43
3696 4026 1.068250 CGCCTAGAAGCTAGCCACC 59.932 63.158 12.13 0.35 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.