Multiple sequence alignment - TraesCS3A01G365900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G365900 chr3A 100.000 7630 0 0 1 7630 614803773 614796144 0.000000e+00 14091.0
1 TraesCS3A01G365900 chr3A 85.116 645 83 10 2530 3170 614800829 614800194 0.000000e+00 647.0
2 TraesCS3A01G365900 chr3A 85.116 645 83 10 2945 3580 614801244 614800604 0.000000e+00 647.0
3 TraesCS3A01G365900 chr3A 94.571 350 17 1 1689 2038 614801957 614801610 2.420000e-149 540.0
4 TraesCS3A01G365900 chr3A 94.571 350 17 1 1817 2164 614802085 614801736 2.420000e-149 540.0
5 TraesCS3A01G365900 chr3A 93.750 224 12 1 1689 1912 614801831 614801610 1.230000e-87 335.0
6 TraesCS3A01G365900 chr3A 93.750 224 12 1 1943 2164 614802085 614801862 1.230000e-87 335.0
7 TraesCS3A01G365900 chr3A 88.961 154 15 1 1696 1849 614801761 614801610 1.010000e-43 189.0
8 TraesCS3A01G365900 chr3A 88.961 154 15 1 2013 2164 614802078 614801925 1.010000e-43 189.0
9 TraesCS3A01G365900 chr3A 82.394 142 6 6 1662 1786 614801749 614801610 1.050000e-18 106.0
10 TraesCS3A01G365900 chr3A 82.394 142 6 6 2025 2164 614802112 614801988 1.050000e-18 106.0
11 TraesCS3A01G365900 chr3A 100.000 36 0 0 1662 1697 614802001 614801966 4.940000e-07 67.6
12 TraesCS3A01G365900 chr3A 100.000 36 0 0 1773 1808 614802112 614802077 4.940000e-07 67.6
13 TraesCS3A01G365900 chr3A 100.000 30 0 0 1662 1691 614801875 614801846 1.000000e-03 56.5
14 TraesCS3A01G365900 chr3A 100.000 30 0 0 1899 1928 614802112 614802083 1.000000e-03 56.5
15 TraesCS3A01G365900 chr3D 95.784 2680 89 12 4029 6698 472442849 472440184 0.000000e+00 4301.0
16 TraesCS3A01G365900 chr3D 94.963 1747 83 3 1836 3580 472445558 472443815 0.000000e+00 2734.0
17 TraesCS3A01G365900 chr3D 92.373 1403 63 16 594 1975 472446609 472445230 0.000000e+00 1958.0
18 TraesCS3A01G365900 chr3D 87.603 968 49 30 6710 7630 472438567 472437624 0.000000e+00 1057.0
19 TraesCS3A01G365900 chr3D 83.691 1073 129 30 2530 3580 472444589 472443541 0.000000e+00 970.0
20 TraesCS3A01G365900 chr3D 82.817 1065 155 21 2530 3580 472444450 472443400 0.000000e+00 928.0
21 TraesCS3A01G365900 chr3D 91.753 582 47 1 1 582 472447173 472446593 0.000000e+00 808.0
22 TraesCS3A01G365900 chr3D 93.886 458 21 3 3580 4032 472443464 472443009 0.000000e+00 684.0
23 TraesCS3A01G365900 chr3D 85.449 646 80 11 2945 3580 472444866 472444225 0.000000e+00 660.0
24 TraesCS3A01G365900 chr3D 78.571 938 157 33 2669 3581 472444866 472443948 5.130000e-161 579.0
25 TraesCS3A01G365900 chr3D 93.051 331 21 1 1708 2038 472445558 472445230 4.140000e-132 483.0
26 TraesCS3A01G365900 chr3D 92.401 329 25 0 1773 2101 472445558 472445230 3.220000e-128 470.0
27 TraesCS3A01G365900 chr3D 93.233 266 18 0 1899 2164 472445558 472445293 7.180000e-105 392.0
28 TraesCS3A01G365900 chr3D 93.750 224 12 1 1689 1912 472445451 472445230 1.230000e-87 335.0
29 TraesCS3A01G365900 chr3D 94.581 203 11 0 1962 2164 472445558 472445356 1.600000e-81 315.0
30 TraesCS3A01G365900 chr3D 90.640 203 18 1 658 860 472448895 472448694 1.260000e-67 268.0
31 TraesCS3A01G365900 chr3D 79.603 353 61 6 34 383 472654109 472653765 7.650000e-60 243.0
32 TraesCS3A01G365900 chr3D 95.000 140 7 0 2025 2164 472445558 472445419 3.580000e-53 220.0
33 TraesCS3A01G365900 chr3D 100.000 29 0 0 6185 6213 472440640 472440612 4.000000e-03 54.7
34 TraesCS3A01G365900 chr3B 91.071 2307 105 38 4984 7227 627920955 627918687 0.000000e+00 3025.0
35 TraesCS3A01G365900 chr3B 87.525 1507 158 24 2091 3580 627924692 627923199 0.000000e+00 1714.0
36 TraesCS3A01G365900 chr3B 93.673 1138 48 18 597 1721 627925838 627924712 0.000000e+00 1681.0
37 TraesCS3A01G365900 chr3B 91.468 879 47 4 3873 4749 627922350 627921498 0.000000e+00 1182.0
38 TraesCS3A01G365900 chr3B 84.934 1062 121 16 2530 3580 627923976 627922943 0.000000e+00 1038.0
39 TraesCS3A01G365900 chr3B 90.722 582 53 1 1 582 627926405 627925825 0.000000e+00 774.0
40 TraesCS3A01G365900 chr3B 81.663 938 142 26 2658 3580 627924259 627923337 0.000000e+00 752.0
41 TraesCS3A01G365900 chr3B 78.148 1080 187 34 2530 3580 627924114 627923055 6.450000e-180 641.0
42 TraesCS3A01G365900 chr3B 77.243 1081 172 45 2523 3580 627923434 627922405 4.000000e-157 566.0
43 TraesCS3A01G365900 chr3B 81.846 650 88 19 2588 3227 627922977 627922348 3.160000e-143 520.0
44 TraesCS3A01G365900 chr3B 94.052 269 14 2 3580 3848 627922603 627922337 2.560000e-109 407.0
45 TraesCS3A01G365900 chr3B 82.480 371 55 6 3217 3580 627924252 627923885 4.440000e-82 316.0
46 TraesCS3A01G365900 chr3B 85.113 309 13 8 7257 7565 627918614 627918339 1.250000e-72 285.0
47 TraesCS3A01G365900 chr3B 97.959 147 3 0 4732 4878 627921324 627921178 9.830000e-64 255.0
48 TraesCS3A01G365900 chr3B 100.000 39 0 0 4953 4991 627921179 627921141 1.060000e-08 73.1
49 TraesCS3A01G365900 chr3B 100.000 29 0 0 6185 6213 627919698 627919670 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G365900 chr3A 614796144 614803773 7629 True 1198.213333 14091 92.638933 1 7630 15 chr3A.!!$R1 7629
1 TraesCS3A01G365900 chr3D 472437624 472448895 11271 True 956.483333 4301 91.085889 1 7630 18 chr3D.!!$R2 7629
2 TraesCS3A01G365900 chr3B 627918339 627926405 8066 True 830.237500 3025 88.618562 1 7565 16 chr3B.!!$R1 7564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
417 2140 0.178903 ACCACCCCTTCACTAGCTCA 60.179 55.000 0.00 0.0 0.00 4.26 F
567 2290 0.179073 CTCCCTATGACACGCCCTTG 60.179 60.000 0.00 0.0 0.00 3.61 F
569 2292 0.251916 CCCTATGACACGCCCTTGAA 59.748 55.000 0.00 0.0 0.00 2.69 F
661 2384 0.521735 AAAATCGAAACCGGAGCAGC 59.478 50.000 9.46 0.0 0.00 5.25 F
1741 3489 0.108585 ACCTGCGGTGAAGTGATGTT 59.891 50.000 0.00 0.0 32.98 2.71 F
3140 4897 0.109597 CCGTACGACGTGCCTTAGTT 60.110 55.000 18.76 0.0 40.58 2.24 F
4361 6920 0.100503 AGTTTGTTGGTCAAGCGTGC 59.899 50.000 0.00 0.0 41.13 5.34 F
5968 8921 1.522580 GACTCCTGAAGATGCCCGC 60.523 63.158 0.00 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1221 2954 0.173708 CGAACTCGGAGAAGAAGGGG 59.826 60.000 12.86 0.00 34.09 4.79 R
1521 3265 1.478510 AGCATCGATCTCAACGAACCT 59.521 47.619 0.00 0.00 42.80 3.50 R
1724 3472 1.511850 TGAACATCACTTCACCGCAG 58.488 50.000 0.00 0.00 0.00 5.18 R
1960 3708 3.189287 CGCAGGTAGGATTATGCATTTCC 59.811 47.826 16.76 16.76 38.60 3.13 R
3439 5479 0.961019 GGCAAGCAATTCTGGACACA 59.039 50.000 0.00 0.00 0.00 3.72 R
4886 7640 1.419762 TCAGCCTTTTGTGCCACTCTA 59.580 47.619 0.00 0.00 0.00 2.43 R
6289 9242 0.109086 CCTCTATGGTATCGCTGCCG 60.109 60.000 0.00 0.00 0.00 5.69 R
7266 11939 0.246635 GTACGAGGCCACATCACACT 59.753 55.000 5.01 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 1807 3.744238 TCGTTCAATCTTGACCTCACA 57.256 42.857 0.00 0.00 36.83 3.58
86 1809 3.320826 TCGTTCAATCTTGACCTCACAGA 59.679 43.478 0.00 0.00 36.83 3.41
113 1836 0.813610 CCAAGCCGACCGCATATTCA 60.814 55.000 0.00 0.00 41.38 2.57
205 1928 6.655003 GTGTTTCCTCCTCAATAACTTCATCA 59.345 38.462 0.00 0.00 0.00 3.07
249 1972 3.969312 CCCAATCTTGCCATTAATCCCTT 59.031 43.478 0.00 0.00 0.00 3.95
258 1981 4.196971 GCCATTAATCCCTTGACGTACTT 58.803 43.478 0.00 0.00 0.00 2.24
260 1983 4.814771 CCATTAATCCCTTGACGTACTTCC 59.185 45.833 0.00 0.00 0.00 3.46
349 2072 0.678048 GCAGAGAAGCCGAAACCCAT 60.678 55.000 0.00 0.00 0.00 4.00
354 2077 1.486726 AGAAGCCGAAACCCATCCTAG 59.513 52.381 0.00 0.00 0.00 3.02
359 2082 2.654863 CCGAAACCCATCCTAGCAAAT 58.345 47.619 0.00 0.00 0.00 2.32
363 2086 4.438744 CGAAACCCATCCTAGCAAATCAAC 60.439 45.833 0.00 0.00 0.00 3.18
409 2132 1.861982 GCTACTAGACCACCCCTTCA 58.138 55.000 0.00 0.00 0.00 3.02
417 2140 0.178903 ACCACCCCTTCACTAGCTCA 60.179 55.000 0.00 0.00 0.00 4.26
424 2147 3.069443 CCCCTTCACTAGCTCAAGATCTC 59.931 52.174 0.00 0.00 0.00 2.75
429 2152 5.117406 TCACTAGCTCAAGATCTCCAGTA 57.883 43.478 0.00 0.00 0.00 2.74
444 2167 0.471191 CAGTAGCAGGATGGATGCCA 59.529 55.000 0.00 0.00 44.97 4.92
471 2194 3.555586 GGGAAGTTTACTAAGCACCGACA 60.556 47.826 0.00 0.00 0.00 4.35
473 2196 4.092968 GGAAGTTTACTAAGCACCGACATG 59.907 45.833 0.00 0.00 0.00 3.21
503 2226 4.377897 CCGGAGATAACATGAAACCCTAC 58.622 47.826 0.00 0.00 0.00 3.18
558 2281 0.831307 GTGGTGGTCCTCCCTATGAC 59.169 60.000 7.53 0.00 34.23 3.06
567 2290 0.179073 CTCCCTATGACACGCCCTTG 60.179 60.000 0.00 0.00 0.00 3.61
568 2291 0.616395 TCCCTATGACACGCCCTTGA 60.616 55.000 0.00 0.00 0.00 3.02
569 2292 0.251916 CCCTATGACACGCCCTTGAA 59.748 55.000 0.00 0.00 0.00 2.69
570 2293 1.134098 CCCTATGACACGCCCTTGAAT 60.134 52.381 0.00 0.00 0.00 2.57
571 2294 2.643551 CCTATGACACGCCCTTGAATT 58.356 47.619 0.00 0.00 0.00 2.17
572 2295 3.433031 CCCTATGACACGCCCTTGAATTA 60.433 47.826 0.00 0.00 0.00 1.40
573 2296 3.560068 CCTATGACACGCCCTTGAATTAC 59.440 47.826 0.00 0.00 0.00 1.89
574 2297 1.434555 TGACACGCCCTTGAATTACG 58.565 50.000 0.00 0.00 0.00 3.18
575 2298 1.001068 TGACACGCCCTTGAATTACGA 59.999 47.619 0.00 0.00 0.00 3.43
576 2299 2.070783 GACACGCCCTTGAATTACGAA 58.929 47.619 0.00 0.00 0.00 3.85
577 2300 2.676342 GACACGCCCTTGAATTACGAAT 59.324 45.455 0.00 0.00 0.00 3.34
578 2301 3.864243 ACACGCCCTTGAATTACGAATA 58.136 40.909 0.00 0.00 0.00 1.75
579 2302 3.619929 ACACGCCCTTGAATTACGAATAC 59.380 43.478 0.00 0.00 0.00 1.89
580 2303 3.869246 CACGCCCTTGAATTACGAATACT 59.131 43.478 0.00 0.00 0.00 2.12
581 2304 4.331717 CACGCCCTTGAATTACGAATACTT 59.668 41.667 0.00 0.00 0.00 2.24
582 2305 4.939439 ACGCCCTTGAATTACGAATACTTT 59.061 37.500 0.00 0.00 0.00 2.66
583 2306 5.413523 ACGCCCTTGAATTACGAATACTTTT 59.586 36.000 0.00 0.00 0.00 2.27
584 2307 6.072342 ACGCCCTTGAATTACGAATACTTTTT 60.072 34.615 0.00 0.00 0.00 1.94
661 2384 0.521735 AAAATCGAAACCGGAGCAGC 59.478 50.000 9.46 0.00 0.00 5.25
679 2402 0.788391 GCGGTAACTGAAACGGAGTG 59.212 55.000 0.00 0.00 45.00 3.51
739 2467 1.280886 GACACAGCAGCAGAGTGACG 61.281 60.000 16.64 0.00 37.05 4.35
740 2468 2.356793 ACAGCAGCAGAGTGACGC 60.357 61.111 0.00 0.00 0.00 5.19
857 2585 4.426112 GCGCCTTTTGCTGCCTCC 62.426 66.667 0.00 0.00 38.05 4.30
951 2681 1.304962 CCCCTTTTCCTTTCCCCCG 60.305 63.158 0.00 0.00 0.00 5.73
964 2694 3.045492 CCCCGTCGGTTTCGGTTG 61.045 66.667 11.06 0.00 45.63 3.77
976 2706 4.426313 CGGTTGCCCCTTCCTCCC 62.426 72.222 0.00 0.00 0.00 4.30
977 2707 2.941583 GGTTGCCCCTTCCTCCCT 60.942 66.667 0.00 0.00 0.00 4.20
980 2710 3.208342 TTGCCCCTTCCTCCCTCCT 62.208 63.158 0.00 0.00 0.00 3.69
1112 2845 3.535962 GGCAGCGAGAGAGGGGAG 61.536 72.222 0.00 0.00 0.00 4.30
1113 2846 2.757917 GCAGCGAGAGAGGGGAGT 60.758 66.667 0.00 0.00 0.00 3.85
1521 3265 3.009253 TCGTGCCTTACAATTTTAGGGGA 59.991 43.478 2.33 0.00 0.00 4.81
1522 3266 3.377172 CGTGCCTTACAATTTTAGGGGAG 59.623 47.826 2.33 0.00 0.00 4.30
1585 3329 0.537371 AGAACAGGGCCGTCTTTTGG 60.537 55.000 0.00 0.00 0.00 3.28
1633 3381 7.328493 GCCCTGTTGTTTTGAATCTAATAACAC 59.672 37.037 6.80 0.00 33.64 3.32
1703 3451 3.303990 CGGTGAAGTGATGTTTGGAGTTG 60.304 47.826 0.00 0.00 0.00 3.16
1713 3461 4.846779 TGTTTGGAGTTGTAGGAAATGC 57.153 40.909 0.00 0.00 0.00 3.56
1717 3465 6.491745 TGTTTGGAGTTGTAGGAAATGCATAA 59.508 34.615 0.00 0.00 0.00 1.90
1721 3469 5.241728 GGAGTTGTAGGAAATGCATAATCCC 59.758 44.000 21.81 11.59 33.55 3.85
1722 3470 5.765510 AGTTGTAGGAAATGCATAATCCCA 58.234 37.500 21.81 13.90 33.55 4.37
1723 3471 5.594317 AGTTGTAGGAAATGCATAATCCCAC 59.406 40.000 21.81 19.60 33.55 4.61
1724 3472 4.469657 TGTAGGAAATGCATAATCCCACC 58.530 43.478 21.81 13.36 33.55 4.61
1726 3474 3.569491 AGGAAATGCATAATCCCACCTG 58.431 45.455 21.81 0.00 33.55 4.00
1727 3475 2.036346 GGAAATGCATAATCCCACCTGC 59.964 50.000 16.96 0.00 35.21 4.85
1728 3476 1.321474 AATGCATAATCCCACCTGCG 58.679 50.000 0.00 0.00 37.44 5.18
1729 3477 0.538057 ATGCATAATCCCACCTGCGG 60.538 55.000 0.00 0.00 37.44 5.69
1739 3487 4.701663 ACCTGCGGTGAAGTGATG 57.298 55.556 0.00 0.00 32.98 3.07
1740 3488 1.754745 ACCTGCGGTGAAGTGATGT 59.245 52.632 0.00 0.00 32.98 3.06
1741 3489 0.108585 ACCTGCGGTGAAGTGATGTT 59.891 50.000 0.00 0.00 32.98 2.71
1742 3490 0.798776 CCTGCGGTGAAGTGATGTTC 59.201 55.000 0.00 0.00 0.00 3.18
1743 3491 1.511850 CTGCGGTGAAGTGATGTTCA 58.488 50.000 0.00 0.00 33.95 3.18
1744 3492 2.079158 CTGCGGTGAAGTGATGTTCAT 58.921 47.619 0.00 0.00 38.68 2.57
1745 3493 2.485426 CTGCGGTGAAGTGATGTTCATT 59.515 45.455 0.00 0.00 38.68 2.57
1773 3521 9.822727 TCATATGTAATAGTTGGAGTCATAGGA 57.177 33.333 1.90 0.00 28.50 2.94
1777 3525 9.784531 ATGTAATAGTTGGAGTCATAGGAAATG 57.215 33.333 0.00 0.00 0.00 2.32
1778 3526 7.715249 TGTAATAGTTGGAGTCATAGGAAATGC 59.285 37.037 0.00 0.00 0.00 3.56
1779 3527 4.574674 AGTTGGAGTCATAGGAAATGCA 57.425 40.909 0.00 0.00 0.00 3.96
1780 3528 5.121380 AGTTGGAGTCATAGGAAATGCAT 57.879 39.130 0.00 0.00 0.00 3.96
1781 3529 6.252599 AGTTGGAGTCATAGGAAATGCATA 57.747 37.500 0.00 0.00 0.00 3.14
1782 3530 6.662755 AGTTGGAGTCATAGGAAATGCATAA 58.337 36.000 0.00 0.00 0.00 1.90
1783 3531 7.293073 AGTTGGAGTCATAGGAAATGCATAAT 58.707 34.615 0.00 0.00 0.00 1.28
1784 3532 7.446625 AGTTGGAGTCATAGGAAATGCATAATC 59.553 37.037 0.00 1.27 0.00 1.75
1785 3533 6.240894 TGGAGTCATAGGAAATGCATAATCC 58.759 40.000 19.16 19.16 0.00 3.01
1786 3534 6.044754 TGGAGTCATAGGAAATGCATAATCCT 59.955 38.462 27.73 27.73 45.39 3.24
1787 3535 7.237471 TGGAGTCATAGGAAATGCATAATCCTA 59.763 37.037 29.40 29.40 46.79 2.94
1788 3536 7.550906 GGAGTCATAGGAAATGCATAATCCTAC 59.449 40.741 29.67 23.34 45.87 3.18
1789 3537 7.398024 AGTCATAGGAAATGCATAATCCTACC 58.602 38.462 29.67 22.73 45.87 3.18
1790 3538 7.238514 AGTCATAGGAAATGCATAATCCTACCT 59.761 37.037 29.67 23.89 45.87 3.08
1791 3539 8.540388 GTCATAGGAAATGCATAATCCTACCTA 58.460 37.037 29.67 20.07 45.87 3.08
1792 3540 8.540388 TCATAGGAAATGCATAATCCTACCTAC 58.460 37.037 29.67 8.21 45.87 3.18
1793 3541 5.794894 AGGAAATGCATAATCCTACCTACG 58.205 41.667 25.13 0.00 41.74 3.51
1794 3542 4.935808 GGAAATGCATAATCCTACCTACGG 59.064 45.833 19.39 0.00 0.00 4.02
1795 3543 5.512576 GGAAATGCATAATCCTACCTACGGT 60.513 44.000 19.39 0.00 40.16 4.83
1796 3544 4.537135 ATGCATAATCCTACCTACGGTG 57.463 45.455 0.00 0.00 36.19 4.94
1797 3545 3.568443 TGCATAATCCTACCTACGGTGA 58.432 45.455 0.00 0.00 36.19 4.02
1798 3546 3.962063 TGCATAATCCTACCTACGGTGAA 59.038 43.478 0.00 0.00 36.19 3.18
1799 3547 4.038763 TGCATAATCCTACCTACGGTGAAG 59.961 45.833 0.00 0.00 36.19 3.02
1800 3548 4.038883 GCATAATCCTACCTACGGTGAAGT 59.961 45.833 0.00 0.00 36.19 3.01
1801 3549 5.529791 CATAATCCTACCTACGGTGAAGTG 58.470 45.833 0.00 0.00 36.19 3.16
1802 3550 2.885135 TCCTACCTACGGTGAAGTGA 57.115 50.000 0.00 0.00 36.19 3.41
1803 3551 3.377253 TCCTACCTACGGTGAAGTGAT 57.623 47.619 0.00 0.00 36.19 3.06
1804 3552 3.021695 TCCTACCTACGGTGAAGTGATG 58.978 50.000 0.00 0.00 36.19 3.07
1805 3553 2.758979 CCTACCTACGGTGAAGTGATGT 59.241 50.000 0.00 0.00 36.19 3.06
1806 3554 3.194968 CCTACCTACGGTGAAGTGATGTT 59.805 47.826 0.00 0.00 36.19 2.71
1807 3555 3.764237 ACCTACGGTGAAGTGATGTTT 57.236 42.857 0.00 0.00 32.98 2.83
1808 3556 4.877378 ACCTACGGTGAAGTGATGTTTA 57.123 40.909 0.00 0.00 32.98 2.01
1809 3557 5.416271 ACCTACGGTGAAGTGATGTTTAT 57.584 39.130 0.00 0.00 32.98 1.40
1810 3558 5.801380 ACCTACGGTGAAGTGATGTTTATT 58.199 37.500 0.00 0.00 32.98 1.40
1811 3559 5.873164 ACCTACGGTGAAGTGATGTTTATTC 59.127 40.000 0.00 0.00 32.98 1.75
1812 3560 5.872617 CCTACGGTGAAGTGATGTTTATTCA 59.127 40.000 0.00 0.00 0.00 2.57
1813 3561 6.538742 CCTACGGTGAAGTGATGTTTATTCAT 59.461 38.462 0.00 0.00 34.45 2.57
1814 3562 7.709182 CCTACGGTGAAGTGATGTTTATTCATA 59.291 37.037 0.00 0.00 34.45 2.15
1815 3563 9.261180 CTACGGTGAAGTGATGTTTATTCATAT 57.739 33.333 0.00 0.00 34.45 1.78
1816 3564 7.919690 ACGGTGAAGTGATGTTTATTCATATG 58.080 34.615 0.00 0.00 34.45 1.78
1817 3565 7.552687 ACGGTGAAGTGATGTTTATTCATATGT 59.447 33.333 1.90 0.00 34.45 2.29
1818 3566 7.852454 CGGTGAAGTGATGTTTATTCATATGTG 59.148 37.037 1.90 0.00 34.45 3.21
1819 3567 8.892723 GGTGAAGTGATGTTTATTCATATGTGA 58.107 33.333 1.90 0.00 34.45 3.58
1822 3570 9.888878 GAAGTGATGTTTATTCATATGTGATGG 57.111 33.333 1.90 0.00 33.56 3.51
1823 3571 8.985315 AGTGATGTTTATTCATATGTGATGGT 57.015 30.769 1.90 0.00 33.56 3.55
1824 3572 9.412460 AGTGATGTTTATTCATATGTGATGGTT 57.588 29.630 1.90 0.00 33.56 3.67
1829 3577 9.241919 TGTTTATTCATATGTGATGGTTTGAGT 57.758 29.630 1.90 0.00 33.56 3.41
1870 3618 0.798776 CCTGCGGTGAAGTGATGTTC 59.201 55.000 0.00 0.00 0.00 3.18
1881 3629 7.224557 CGGTGAAGTGATGTTCATTCATATGTA 59.775 37.037 1.90 0.00 38.68 2.29
1911 3659 5.221925 TGGAGTCCTAGGAAATGCATAATCC 60.222 44.000 14.65 19.16 0.00 3.01
1912 3660 5.013599 GGAGTCCTAGGAAATGCATAATCCT 59.986 44.000 27.73 27.73 45.39 3.24
1913 3661 6.213600 GGAGTCCTAGGAAATGCATAATCCTA 59.786 42.308 27.20 27.20 43.28 2.94
1914 3662 7.010339 AGTCCTAGGAAATGCATAATCCTAC 57.990 40.000 26.14 21.58 43.28 3.18
1915 3663 6.013293 AGTCCTAGGAAATGCATAATCCTACC 60.013 42.308 26.14 19.29 43.28 3.18
1916 3664 6.013293 GTCCTAGGAAATGCATAATCCTACCT 60.013 42.308 26.14 16.98 43.28 3.08
1917 3665 7.180408 GTCCTAGGAAATGCATAATCCTACCTA 59.820 40.741 26.14 17.13 43.28 3.08
1918 3666 7.180408 TCCTAGGAAATGCATAATCCTACCTAC 59.820 40.741 26.14 6.02 43.28 3.18
1919 3667 5.794894 AGGAAATGCATAATCCTACCTACG 58.205 41.667 25.13 0.00 41.74 3.51
1920 3668 4.935808 GGAAATGCATAATCCTACCTACGG 59.064 45.833 19.39 0.00 0.00 4.02
1921 3669 5.512576 GGAAATGCATAATCCTACCTACGGT 60.513 44.000 19.39 0.00 40.16 4.83
1922 3670 4.537135 ATGCATAATCCTACCTACGGTG 57.463 45.455 0.00 0.00 36.19 4.94
1923 3671 3.568443 TGCATAATCCTACCTACGGTGA 58.432 45.455 0.00 0.00 36.19 4.02
1924 3672 3.962063 TGCATAATCCTACCTACGGTGAA 59.038 43.478 0.00 0.00 36.19 3.18
1925 3673 4.038763 TGCATAATCCTACCTACGGTGAAG 59.961 45.833 0.00 0.00 36.19 3.02
1926 3674 4.038883 GCATAATCCTACCTACGGTGAAGT 59.961 45.833 0.00 0.00 36.19 3.01
1927 3675 5.529791 CATAATCCTACCTACGGTGAAGTG 58.470 45.833 0.00 0.00 36.19 3.16
1928 3676 1.180029 TCCTACCTACGGTGAAGTGC 58.820 55.000 0.00 0.00 36.19 4.40
1929 3677 1.183549 CCTACCTACGGTGAAGTGCT 58.816 55.000 0.00 0.00 36.19 4.40
1930 3678 1.135083 CCTACCTACGGTGAAGTGCTG 60.135 57.143 0.00 0.00 36.19 4.41
1931 3679 1.544691 CTACCTACGGTGAAGTGCTGT 59.455 52.381 0.00 0.00 36.19 4.40
1932 3680 0.756903 ACCTACGGTGAAGTGCTGTT 59.243 50.000 0.00 0.00 32.98 3.16
1933 3681 1.140252 ACCTACGGTGAAGTGCTGTTT 59.860 47.619 0.00 0.00 32.98 2.83
1934 3682 2.366266 ACCTACGGTGAAGTGCTGTTTA 59.634 45.455 0.00 0.00 32.98 2.01
1935 3683 3.007614 ACCTACGGTGAAGTGCTGTTTAT 59.992 43.478 0.00 0.00 32.98 1.40
1936 3684 4.000988 CCTACGGTGAAGTGCTGTTTATT 58.999 43.478 0.00 0.00 0.00 1.40
1937 3685 4.092968 CCTACGGTGAAGTGCTGTTTATTC 59.907 45.833 0.00 0.00 0.00 1.75
1938 3686 3.472652 ACGGTGAAGTGCTGTTTATTCA 58.527 40.909 0.00 0.00 0.00 2.57
1939 3687 4.072131 ACGGTGAAGTGCTGTTTATTCAT 58.928 39.130 0.00 0.00 34.45 2.57
1940 3688 5.242434 ACGGTGAAGTGCTGTTTATTCATA 58.758 37.500 0.00 0.00 34.45 2.15
1941 3689 5.880332 ACGGTGAAGTGCTGTTTATTCATAT 59.120 36.000 0.00 0.00 34.45 1.78
1942 3690 6.183360 ACGGTGAAGTGCTGTTTATTCATATG 60.183 38.462 0.00 0.00 34.45 1.78
1943 3691 6.183360 CGGTGAAGTGCTGTTTATTCATATGT 60.183 38.462 1.90 0.00 34.45 2.29
1944 3692 6.968904 GGTGAAGTGCTGTTTATTCATATGTG 59.031 38.462 1.90 0.00 34.45 3.21
1945 3693 7.148255 GGTGAAGTGCTGTTTATTCATATGTGA 60.148 37.037 1.90 0.00 34.45 3.58
1946 3694 8.400947 GTGAAGTGCTGTTTATTCATATGTGAT 58.599 33.333 1.90 1.48 34.45 3.06
1947 3695 8.400186 TGAAGTGCTGTTTATTCATATGTGATG 58.600 33.333 1.90 0.00 33.56 3.07
1948 3696 7.268199 AGTGCTGTTTATTCATATGTGATGG 57.732 36.000 1.90 0.00 33.56 3.51
1949 3697 6.830324 AGTGCTGTTTATTCATATGTGATGGT 59.170 34.615 1.90 0.00 33.56 3.55
1950 3698 7.340232 AGTGCTGTTTATTCATATGTGATGGTT 59.660 33.333 1.90 0.00 33.56 3.67
1951 3699 7.975616 GTGCTGTTTATTCATATGTGATGGTTT 59.024 33.333 1.90 0.00 33.56 3.27
1952 3700 7.975058 TGCTGTTTATTCATATGTGATGGTTTG 59.025 33.333 1.90 0.00 33.56 2.93
1953 3701 8.190122 GCTGTTTATTCATATGTGATGGTTTGA 58.810 33.333 1.90 0.00 33.56 2.69
1954 3702 9.726232 CTGTTTATTCATATGTGATGGTTTGAG 57.274 33.333 1.90 0.00 33.56 3.02
1955 3703 9.241919 TGTTTATTCATATGTGATGGTTTGAGT 57.758 29.630 1.90 0.00 33.56 3.41
1958 3706 7.707624 ATTCATATGTGATGGTTTGAGTTGT 57.292 32.000 1.90 0.00 33.56 3.32
1959 3707 8.806429 ATTCATATGTGATGGTTTGAGTTGTA 57.194 30.769 1.90 0.00 33.56 2.41
1960 3708 7.848223 TCATATGTGATGGTTTGAGTTGTAG 57.152 36.000 1.90 0.00 0.00 2.74
1961 3709 6.823182 TCATATGTGATGGTTTGAGTTGTAGG 59.177 38.462 1.90 0.00 0.00 3.18
1962 3710 4.698201 TGTGATGGTTTGAGTTGTAGGA 57.302 40.909 0.00 0.00 0.00 2.94
1963 3711 5.042463 TGTGATGGTTTGAGTTGTAGGAA 57.958 39.130 0.00 0.00 0.00 3.36
1964 3712 5.441500 TGTGATGGTTTGAGTTGTAGGAAA 58.558 37.500 0.00 0.00 0.00 3.13
1965 3713 6.068010 TGTGATGGTTTGAGTTGTAGGAAAT 58.932 36.000 0.00 0.00 0.00 2.17
1966 3714 6.016360 TGTGATGGTTTGAGTTGTAGGAAATG 60.016 38.462 0.00 0.00 0.00 2.32
1967 3715 4.846779 TGGTTTGAGTTGTAGGAAATGC 57.153 40.909 0.00 0.00 0.00 3.56
1968 3716 4.211125 TGGTTTGAGTTGTAGGAAATGCA 58.789 39.130 0.00 0.00 0.00 3.96
1969 3717 4.832266 TGGTTTGAGTTGTAGGAAATGCAT 59.168 37.500 0.00 0.00 0.00 3.96
1970 3718 6.007076 TGGTTTGAGTTGTAGGAAATGCATA 58.993 36.000 0.00 0.00 0.00 3.14
1971 3719 6.491745 TGGTTTGAGTTGTAGGAAATGCATAA 59.508 34.615 0.00 0.00 0.00 1.90
1972 3720 7.178274 TGGTTTGAGTTGTAGGAAATGCATAAT 59.822 33.333 0.00 0.00 0.00 1.28
1973 3721 7.702348 GGTTTGAGTTGTAGGAAATGCATAATC 59.298 37.037 0.00 1.27 0.00 1.75
1996 3744 0.798776 CCTGCGGTGAAGTGATGTTC 59.201 55.000 0.00 0.00 0.00 3.18
2007 3755 7.224557 CGGTGAAGTGATGTTCATTCATATGTA 59.775 37.037 1.90 0.00 38.68 2.29
2043 3791 8.540388 GTCATAGGAAATGCATAATCCTACCTA 58.460 37.037 29.67 20.07 45.87 3.08
2061 3809 5.217978 ACCTACGGTGAAGTGATGTTTAA 57.782 39.130 0.00 0.00 32.98 1.52
2083 3831 9.778741 TTTAATCATATGTGATAGTTGGAGTCC 57.221 33.333 5.27 0.73 44.20 3.85
2087 3835 7.526918 TCATATGTGATAGTTGGAGTCCTAGA 58.473 38.462 11.33 0.00 0.00 2.43
2133 3881 7.852454 CGGTGAAGTGATGTTTATTCATATGTG 59.148 37.037 1.90 0.00 34.45 3.21
2160 3908 4.963318 TGGAGTCCTAGGAAATGCATAG 57.037 45.455 14.65 0.00 0.00 2.23
2387 4138 2.738013 AGGCTTGCTCTTTTTGCATC 57.262 45.000 0.00 0.00 40.34 3.91
2422 4173 6.478344 GGCTGTCTATAGTTGATTCTGAAGTG 59.522 42.308 0.00 0.00 0.00 3.16
2440 4191 5.304101 TGAAGTGGTTGTATTGAAAATGGCT 59.696 36.000 0.00 0.00 0.00 4.75
2633 4384 4.039245 TCTGTCGTCTCCTGAATTTCTTGT 59.961 41.667 0.00 0.00 0.00 3.16
2692 4444 0.525242 TTCTGCTGTTTTGCACGTGC 60.525 50.000 33.11 33.11 38.12 5.34
2730 4482 2.292569 TCCGTACGCCTAGCTTTATCAG 59.707 50.000 10.49 0.00 0.00 2.90
2735 4487 4.202245 ACGCCTAGCTTTATCAGTTTCA 57.798 40.909 0.00 0.00 0.00 2.69
2760 4512 5.880054 ATTTGAGTTTTGTCGTATCCTGG 57.120 39.130 0.00 0.00 0.00 4.45
2905 4657 1.234821 TTGTCGTGTCCTGAATTGCC 58.765 50.000 0.00 0.00 0.00 4.52
2971 4723 0.461870 TGCTGTTCTTGCACGTGTCT 60.462 50.000 18.38 0.00 35.31 3.41
2988 4740 5.121768 ACGTGTCTACATTTGCATACTTTCC 59.878 40.000 0.00 0.00 0.00 3.13
2992 4744 7.011109 GTGTCTACATTTGCATACTTTCCGTAT 59.989 37.037 0.00 0.00 39.39 3.06
3039 4791 2.034001 CGAGTTTTGTCGTGTCCTGAAC 60.034 50.000 0.00 0.00 35.14 3.18
3059 4811 5.048782 TGAACTGCTTTGCGTTAAGAATCAT 60.049 36.000 3.30 0.00 0.00 2.45
3140 4897 0.109597 CCGTACGACGTGCCTTAGTT 60.110 55.000 18.76 0.00 40.58 2.24
3201 4959 9.168451 TGTTGTGTTAAGAATAAACTCAAGTGA 57.832 29.630 4.30 0.00 39.57 3.41
3238 5134 6.175471 TGATTAATGCTGTTGAGATCACACT 58.825 36.000 0.00 0.00 0.00 3.55
3346 5242 9.076596 GTTAAGAATAAATTCAAGTGGATGTGC 57.923 33.333 5.55 0.00 39.23 4.57
3389 5429 2.020720 TCTTGCACGTGTCCACATTTT 58.979 42.857 18.38 0.00 0.00 1.82
3404 5444 6.148150 GTCCACATTTTCATACTTTCCGTACA 59.852 38.462 0.00 0.00 0.00 2.90
3438 5478 6.576551 TCGGTTTTGTTATTTGAGTTTTGC 57.423 33.333 0.00 0.00 0.00 3.68
3439 5479 6.334202 TCGGTTTTGTTATTTGAGTTTTGCT 58.666 32.000 0.00 0.00 0.00 3.91
3458 5498 0.961019 TGTGTCCAGAATTGCTTGCC 59.039 50.000 0.00 0.00 0.00 4.52
3465 5505 2.686915 CCAGAATTGCTTGCCCTAAGAG 59.313 50.000 0.00 0.00 38.76 2.85
3468 5508 3.009473 AGAATTGCTTGCCCTAAGAGTCA 59.991 43.478 0.00 0.00 38.76 3.41
3473 5513 3.244875 TGCTTGCCCTAAGAGTCAATTCA 60.245 43.478 0.00 0.00 38.76 2.57
3478 5518 4.000988 GCCCTAAGAGTCAATTCAAACGA 58.999 43.478 0.00 0.00 0.00 3.85
3508 5548 8.094548 TGTAGTTATTGATTAGTGCTGTTGAGT 58.905 33.333 0.00 0.00 0.00 3.41
3560 5874 3.925913 CCATGCCTTAATCGGTTTTGTTG 59.074 43.478 0.00 0.00 0.00 3.33
3677 6069 6.073440 TGTGTTAAGAATAACTTCAAGCGGAC 60.073 38.462 0.00 0.00 41.65 4.79
3716 6108 5.673337 ATTATGTGGCGATTACATGTGTC 57.327 39.130 9.11 5.81 39.03 3.67
3789 6181 3.554934 TCTTGTGTCCTGATTTGCTTGT 58.445 40.909 0.00 0.00 0.00 3.16
3867 6259 5.763204 CAGTTGCCCATAGTATTTTCCGTAT 59.237 40.000 0.00 0.00 0.00 3.06
3949 6345 7.358352 GCAGATTTTTCAATATTTATTCCGCGG 60.358 37.037 22.12 22.12 0.00 6.46
3973 6369 6.266330 GGGATAAGAGCAAATTCAAGCCTATT 59.734 38.462 0.00 0.00 0.00 1.73
4017 6413 7.872113 ATCCCTGAATAGTTCTGAAATCAAC 57.128 36.000 0.00 0.00 0.00 3.18
4288 6847 5.657826 ATACAACAGCAAAATATGTGGCA 57.342 34.783 0.00 0.00 0.00 4.92
4358 6917 2.223377 GGTCTAGTTTGTTGGTCAAGCG 59.777 50.000 0.00 0.00 41.13 4.68
4361 6920 0.100503 AGTTTGTTGGTCAAGCGTGC 59.899 50.000 0.00 0.00 41.13 5.34
4483 7042 5.692115 TGATTCTCAGTGCCCATTACTAA 57.308 39.130 0.00 0.00 0.00 2.24
4516 7075 9.596677 CACCATGTAATGCAAACAATTAAAAAG 57.403 29.630 9.07 0.00 44.97 2.27
4607 7166 3.772932 TGATTTGATCCGAAATGCAAGC 58.227 40.909 0.00 0.00 0.00 4.01
4614 7173 3.383620 TCCGAAATGCAAGCACAAATT 57.616 38.095 0.00 0.00 0.00 1.82
4707 7270 8.470805 AGGGACTCGACATATGATATTGTTATC 58.529 37.037 10.38 0.00 35.70 1.75
4886 7640 3.197983 CCTCCGTCTTTCTATGAAGGGTT 59.802 47.826 0.00 0.00 34.58 4.11
5080 8027 8.616076 GTTTCTTCCCATACTAGTGATCAATTG 58.384 37.037 5.39 1.29 0.00 2.32
5096 8044 9.474920 GTGATCAATTGTTTGTAATTTTCTCCA 57.525 29.630 5.13 0.00 34.32 3.86
5155 8103 8.589338 ACAGTGTACTGATTGAGTCTTAAGAAT 58.411 33.333 18.18 5.81 46.59 2.40
5156 8104 8.867935 CAGTGTACTGATTGAGTCTTAAGAATG 58.132 37.037 10.69 0.00 46.59 2.67
5225 8173 5.511234 ACATATTTCTTGCAGGAGATTGC 57.489 39.130 7.18 0.00 44.33 3.56
5267 8215 5.532406 TGGTAGCCTAAGTTACGTATTCGAT 59.468 40.000 0.00 0.00 40.62 3.59
5313 8261 6.405176 GGCTTTAGGATCAGGTTTCATTTGAG 60.405 42.308 0.00 0.00 0.00 3.02
5341 8289 6.040504 AGTTTTTCCGTTTAGAGGAGCATTTT 59.959 34.615 0.00 0.00 39.22 1.82
5549 8502 5.882000 TGCTACAAGTTCTATGCATTGTGAT 59.118 36.000 3.54 0.00 36.59 3.06
5607 8560 4.202441 CCAAGTTCATATTCTCACCTGGG 58.798 47.826 0.00 0.00 0.00 4.45
5608 8561 4.202441 CAAGTTCATATTCTCACCTGGGG 58.798 47.826 0.00 0.00 0.00 4.96
5968 8921 1.522580 GACTCCTGAAGATGCCCGC 60.523 63.158 0.00 0.00 0.00 6.13
5995 8948 1.774856 ACAGCCTCTTGTAACCAGGTT 59.225 47.619 10.50 10.50 0.00 3.50
6151 9104 2.649129 GGGTCCATTTGGCAGCCAC 61.649 63.158 15.89 0.30 30.78 5.01
6256 9209 3.492656 GCGAAGATAGCTATGTGGTGGAA 60.493 47.826 11.94 0.00 0.00 3.53
6289 9242 0.892814 AAGCTGAAGCAAGTGAGCCC 60.893 55.000 4.90 0.00 45.16 5.19
6600 9556 6.428159 TGGAAACTGCATAGAGACTTCTTTTC 59.572 38.462 0.00 0.00 34.79 2.29
6631 9587 6.902341 TGAAATGAAAACTGCATAGAGACAC 58.098 36.000 0.00 0.00 0.00 3.67
6654 9610 2.159170 TGGAGGTTTTGCTTCGTTTTGG 60.159 45.455 0.00 0.00 0.00 3.28
6732 11295 4.744570 TGTTTAGAGTATGAAGGCTCACG 58.255 43.478 0.00 0.00 33.30 4.35
6767 11333 0.536006 GGAGGAAATGCTGATCCCCG 60.536 60.000 0.00 0.00 36.31 5.73
6785 11351 1.224592 GTCCCGCTGGTGGATCAAT 59.775 57.895 1.28 0.00 33.65 2.57
6786 11352 0.815615 GTCCCGCTGGTGGATCAATC 60.816 60.000 1.28 0.00 33.65 2.67
6787 11353 1.224315 CCCGCTGGTGGATCAATCA 59.776 57.895 1.28 0.00 0.00 2.57
6788 11354 0.394216 CCCGCTGGTGGATCAATCAA 60.394 55.000 1.28 0.00 0.00 2.57
6931 11501 0.460284 GGAGGTGTACATCAGGCACG 60.460 60.000 9.22 0.00 34.25 5.34
7027 11597 2.484264 ACGTGCAGTAATTTTGAGGAGC 59.516 45.455 0.00 0.00 0.00 4.70
7155 11750 1.270518 GCTGGTGAGAGCTCAAGAACA 60.271 52.381 17.77 6.85 41.85 3.18
7256 11929 2.048503 GGGAACGACGGACACCTG 60.049 66.667 0.00 0.00 0.00 4.00
7257 11930 2.737376 GGAACGACGGACACCTGC 60.737 66.667 0.00 0.00 0.00 4.85
7258 11931 3.103911 GAACGACGGACACCTGCG 61.104 66.667 0.00 0.00 37.24 5.18
7266 11939 4.367023 GACACCTGCGCCCGTGTA 62.367 66.667 24.38 0.00 43.12 2.90
7268 11941 4.373116 CACCTGCGCCCGTGTAGT 62.373 66.667 4.18 0.00 0.00 2.73
7440 12113 1.132036 AGGGAAGGAAGGAAGGAAGGT 60.132 52.381 0.00 0.00 0.00 3.50
7487 12160 3.387091 TCACGGGATGACGGGGTG 61.387 66.667 0.00 0.00 37.96 4.61
7490 12163 4.838152 CGGGATGACGGGGTGCTG 62.838 72.222 0.00 0.00 0.00 4.41
7561 12234 2.508887 CACGCTGGAGAGCAGAGC 60.509 66.667 0.00 0.00 46.62 4.09
7579 12252 2.661537 TCAGTTCAGCGGTGCGTG 60.662 61.111 10.38 7.02 0.00 5.34
7595 12268 2.174334 GTGCCTACGTACGACCTGA 58.826 57.895 24.41 0.00 0.00 3.86
7602 12275 2.719426 ACGTACGACCTGAGGAAAAG 57.281 50.000 24.41 0.00 0.00 2.27
7604 12277 2.624838 ACGTACGACCTGAGGAAAAGAA 59.375 45.455 24.41 0.00 0.00 2.52
7605 12278 3.068590 ACGTACGACCTGAGGAAAAGAAA 59.931 43.478 24.41 0.00 0.00 2.52
7609 12282 3.626217 ACGACCTGAGGAAAAGAAAACAC 59.374 43.478 4.99 0.00 0.00 3.32
7610 12283 3.303132 CGACCTGAGGAAAAGAAAACACG 60.303 47.826 4.99 0.00 0.00 4.49
7611 12284 3.875134 GACCTGAGGAAAAGAAAACACGA 59.125 43.478 4.99 0.00 0.00 4.35
7612 12285 3.626217 ACCTGAGGAAAAGAAAACACGAC 59.374 43.478 4.99 0.00 0.00 4.34
7613 12286 3.625764 CCTGAGGAAAAGAAAACACGACA 59.374 43.478 0.00 0.00 0.00 4.35
7614 12287 4.275936 CCTGAGGAAAAGAAAACACGACAT 59.724 41.667 0.00 0.00 0.00 3.06
7616 12289 4.638421 TGAGGAAAAGAAAACACGACATGT 59.362 37.500 0.00 0.00 46.42 3.21
7626 12299 4.012554 CGACATGTTCGGGGATCG 57.987 61.111 0.00 0.00 44.60 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 1749 2.438254 ATGCAATTCTCGCCCGCA 60.438 55.556 0.00 0.00 36.95 5.69
28 1751 1.353103 GTGATGCAATTCTCGCCCG 59.647 57.895 0.00 0.00 0.00 6.13
31 1754 4.229096 TCTTTTTGTGATGCAATTCTCGC 58.771 39.130 0.00 0.00 36.89 5.03
84 1807 1.918293 TCGGCTTGGGACCATGTCT 60.918 57.895 7.17 0.00 32.47 3.41
86 1809 2.351276 GTCGGCTTGGGACCATGT 59.649 61.111 6.17 0.00 0.00 3.21
113 1836 3.064408 CACATAGAGCATGCGTTTCACAT 59.936 43.478 13.01 0.00 38.29 3.21
249 1972 2.967397 CTGGGCGGAAGTACGTCA 59.033 61.111 11.01 0.00 40.90 4.35
349 2072 1.274167 ACGACGGTTGATTTGCTAGGA 59.726 47.619 1.53 0.00 0.00 2.94
354 2077 0.719465 ATCGACGACGGTTGATTTGC 59.281 50.000 7.55 0.00 43.38 3.68
359 2082 0.109458 CTTGGATCGACGACGGTTGA 60.109 55.000 7.55 0.00 40.79 3.18
363 2086 2.582498 GCCTTGGATCGACGACGG 60.582 66.667 7.55 0.00 40.21 4.79
389 2112 0.745468 GAAGGGGTGGTCTAGTAGCG 59.255 60.000 0.00 0.00 0.00 4.26
409 2132 3.888930 GCTACTGGAGATCTTGAGCTAGT 59.111 47.826 0.00 0.00 0.00 2.57
417 2140 2.971330 CCATCCTGCTACTGGAGATCTT 59.029 50.000 0.00 0.00 35.07 2.40
424 2147 0.250640 GGCATCCATCCTGCTACTGG 60.251 60.000 0.00 0.00 39.60 4.00
429 2152 1.760613 CATTTTGGCATCCATCCTGCT 59.239 47.619 0.00 0.00 39.60 4.24
444 2167 5.048294 CGGTGCTTAGTAAACTTCCCATTTT 60.048 40.000 0.00 0.00 0.00 1.82
473 2196 3.908081 TTATCTCCGGCGGCGTCC 61.908 66.667 30.09 8.20 0.00 4.79
503 2226 0.749091 TCATGCGCATCCCCTTTGAG 60.749 55.000 22.51 6.04 0.00 3.02
550 2273 0.251916 TTCAAGGGCGTGTCATAGGG 59.748 55.000 0.00 0.00 0.00 3.53
558 2281 3.869246 AGTATTCGTAATTCAAGGGCGTG 59.131 43.478 0.00 0.00 0.00 5.34
587 2310 8.377681 CGCTAAGTATTCGTAATTCAACTTCAA 58.622 33.333 0.00 0.00 0.00 2.69
588 2311 7.756272 TCGCTAAGTATTCGTAATTCAACTTCA 59.244 33.333 0.00 0.00 0.00 3.02
589 2312 8.112099 TCGCTAAGTATTCGTAATTCAACTTC 57.888 34.615 0.00 0.00 0.00 3.01
590 2313 7.758528 ACTCGCTAAGTATTCGTAATTCAACTT 59.241 33.333 0.00 0.00 36.07 2.66
591 2314 7.256286 ACTCGCTAAGTATTCGTAATTCAACT 58.744 34.615 0.00 0.00 36.07 3.16
592 2315 7.447243 ACTCGCTAAGTATTCGTAATTCAAC 57.553 36.000 0.00 0.00 36.07 3.18
661 2384 2.056577 GTCACTCCGTTTCAGTTACCG 58.943 52.381 0.00 0.00 0.00 4.02
880 2608 0.546122 TGAGTGCTGTTTGGTCTGGT 59.454 50.000 0.00 0.00 0.00 4.00
884 2612 2.945668 AGAGTTTGAGTGCTGTTTGGTC 59.054 45.455 0.00 0.00 0.00 4.02
964 2694 2.770475 GAGGAGGGAGGAAGGGGC 60.770 72.222 0.00 0.00 0.00 5.80
976 2706 5.451242 CGATTCTTGTAAGGGAAGAGAGGAG 60.451 48.000 0.00 0.00 31.17 3.69
977 2707 4.402793 CGATTCTTGTAAGGGAAGAGAGGA 59.597 45.833 0.00 0.00 31.17 3.71
980 2710 3.769844 AGCGATTCTTGTAAGGGAAGAGA 59.230 43.478 0.00 0.00 31.17 3.10
1152 2885 1.738099 CACCTCGTGGTACAGCAGC 60.738 63.158 9.18 0.00 46.60 5.25
1221 2954 0.173708 CGAACTCGGAGAAGAAGGGG 59.826 60.000 12.86 0.00 34.09 4.79
1521 3265 1.478510 AGCATCGATCTCAACGAACCT 59.521 47.619 0.00 0.00 42.80 3.50
1522 3266 1.927895 AGCATCGATCTCAACGAACC 58.072 50.000 0.00 0.00 42.80 3.62
1585 3329 6.459710 GGGCAACATACAGAATTAACCTAAGC 60.460 42.308 0.00 0.00 39.74 3.09
1633 3381 4.165779 GGCCATCAAAAGAACAATACACG 58.834 43.478 0.00 0.00 0.00 4.49
1703 3451 4.520492 CAGGTGGGATTATGCATTTCCTAC 59.480 45.833 24.78 24.78 39.53 3.18
1724 3472 1.511850 TGAACATCACTTCACCGCAG 58.488 50.000 0.00 0.00 0.00 5.18
1726 3474 3.559238 AAATGAACATCACTTCACCGC 57.441 42.857 0.00 0.00 32.95 5.68
1727 3475 5.107109 TGAAAATGAACATCACTTCACCG 57.893 39.130 3.74 0.00 32.95 4.94
1728 3476 8.246180 ACATATGAAAATGAACATCACTTCACC 58.754 33.333 10.38 0.00 35.61 4.02
1755 3503 6.662755 TGCATTTCCTATGACTCCAACTATT 58.337 36.000 0.00 0.00 0.00 1.73
1758 3506 4.574674 TGCATTTCCTATGACTCCAACT 57.425 40.909 0.00 0.00 0.00 3.16
1763 3511 7.550906 GGTAGGATTATGCATTTCCTATGACTC 59.449 40.741 27.67 19.09 42.51 3.36
1768 3516 7.556844 CGTAGGTAGGATTATGCATTTCCTAT 58.443 38.462 27.67 19.98 42.51 2.57
1769 3517 6.931838 CGTAGGTAGGATTATGCATTTCCTA 58.068 40.000 24.04 24.04 40.37 2.94
1770 3518 5.794894 CGTAGGTAGGATTATGCATTTCCT 58.205 41.667 25.59 25.59 42.49 3.36
1789 3537 6.961359 TGAATAAACATCACTTCACCGTAG 57.039 37.500 0.00 0.00 0.00 3.51
1790 3538 9.040939 CATATGAATAAACATCACTTCACCGTA 57.959 33.333 0.00 0.00 31.00 4.02
1791 3539 7.552687 ACATATGAATAAACATCACTTCACCGT 59.447 33.333 10.38 0.00 31.00 4.83
1792 3540 7.852454 CACATATGAATAAACATCACTTCACCG 59.148 37.037 10.38 0.00 31.00 4.94
1793 3541 8.892723 TCACATATGAATAAACATCACTTCACC 58.107 33.333 10.38 0.00 31.00 4.02
1796 3544 9.888878 CCATCACATATGAATAAACATCACTTC 57.111 33.333 10.38 0.00 38.69 3.01
1797 3545 9.412460 ACCATCACATATGAATAAACATCACTT 57.588 29.630 10.38 0.00 38.69 3.16
1798 3546 8.985315 ACCATCACATATGAATAAACATCACT 57.015 30.769 10.38 0.00 38.69 3.41
1803 3551 9.241919 ACTCAAACCATCACATATGAATAAACA 57.758 29.630 10.38 0.00 38.69 2.83
1806 3554 9.241919 ACAACTCAAACCATCACATATGAATAA 57.758 29.630 10.38 0.00 38.69 1.40
1807 3555 8.806429 ACAACTCAAACCATCACATATGAATA 57.194 30.769 10.38 0.00 38.69 1.75
1808 3556 7.707624 ACAACTCAAACCATCACATATGAAT 57.292 32.000 10.38 0.00 38.69 2.57
1809 3557 7.336679 CCTACAACTCAAACCATCACATATGAA 59.663 37.037 10.38 0.00 38.69 2.57
1810 3558 6.823182 CCTACAACTCAAACCATCACATATGA 59.177 38.462 10.38 0.00 39.83 2.15
1811 3559 6.823182 TCCTACAACTCAAACCATCACATATG 59.177 38.462 0.00 0.00 0.00 1.78
1812 3560 6.957631 TCCTACAACTCAAACCATCACATAT 58.042 36.000 0.00 0.00 0.00 1.78
1813 3561 6.367374 TCCTACAACTCAAACCATCACATA 57.633 37.500 0.00 0.00 0.00 2.29
1814 3562 5.241403 TCCTACAACTCAAACCATCACAT 57.759 39.130 0.00 0.00 0.00 3.21
1815 3563 4.698201 TCCTACAACTCAAACCATCACA 57.302 40.909 0.00 0.00 0.00 3.58
1816 3564 6.381801 CATTTCCTACAACTCAAACCATCAC 58.618 40.000 0.00 0.00 0.00 3.06
1817 3565 5.048083 GCATTTCCTACAACTCAAACCATCA 60.048 40.000 0.00 0.00 0.00 3.07
1818 3566 5.048083 TGCATTTCCTACAACTCAAACCATC 60.048 40.000 0.00 0.00 0.00 3.51
1819 3567 4.832266 TGCATTTCCTACAACTCAAACCAT 59.168 37.500 0.00 0.00 0.00 3.55
1820 3568 4.211125 TGCATTTCCTACAACTCAAACCA 58.789 39.130 0.00 0.00 0.00 3.67
1821 3569 4.846779 TGCATTTCCTACAACTCAAACC 57.153 40.909 0.00 0.00 0.00 3.27
1822 3570 7.702348 GGATTATGCATTTCCTACAACTCAAAC 59.298 37.037 17.07 0.00 0.00 2.93
1823 3571 7.615365 AGGATTATGCATTTCCTACAACTCAAA 59.385 33.333 22.77 0.92 38.11 2.69
1824 3572 7.118723 AGGATTATGCATTTCCTACAACTCAA 58.881 34.615 22.77 1.32 38.11 3.02
1825 3573 6.662755 AGGATTATGCATTTCCTACAACTCA 58.337 36.000 22.77 0.00 38.11 3.41
1881 3629 5.191722 TGCATTTCCTAGGACTCCAACTATT 59.808 40.000 12.22 0.00 0.00 1.73
1915 3663 4.688879 TGAATAAACAGCACTTCACCGTAG 59.311 41.667 0.00 0.00 0.00 3.51
1916 3664 4.633175 TGAATAAACAGCACTTCACCGTA 58.367 39.130 0.00 0.00 0.00 4.02
1917 3665 3.472652 TGAATAAACAGCACTTCACCGT 58.527 40.909 0.00 0.00 0.00 4.83
1918 3666 4.685169 ATGAATAAACAGCACTTCACCG 57.315 40.909 0.00 0.00 31.00 4.94
1919 3667 6.968904 CACATATGAATAAACAGCACTTCACC 59.031 38.462 10.38 0.00 31.00 4.02
1920 3668 7.751732 TCACATATGAATAAACAGCACTTCAC 58.248 34.615 10.38 0.00 31.00 3.18
1921 3669 7.920160 TCACATATGAATAAACAGCACTTCA 57.080 32.000 10.38 0.00 32.63 3.02
1922 3670 7.859377 CCATCACATATGAATAAACAGCACTTC 59.141 37.037 10.38 0.00 38.69 3.01
1923 3671 7.340232 ACCATCACATATGAATAAACAGCACTT 59.660 33.333 10.38 0.00 38.69 3.16
1924 3672 6.830324 ACCATCACATATGAATAAACAGCACT 59.170 34.615 10.38 0.00 38.69 4.40
1925 3673 7.031226 ACCATCACATATGAATAAACAGCAC 57.969 36.000 10.38 0.00 38.69 4.40
1926 3674 7.643569 AACCATCACATATGAATAAACAGCA 57.356 32.000 10.38 0.00 38.69 4.41
1927 3675 8.190122 TCAAACCATCACATATGAATAAACAGC 58.810 33.333 10.38 0.00 38.69 4.40
1928 3676 9.726232 CTCAAACCATCACATATGAATAAACAG 57.274 33.333 10.38 0.00 38.69 3.16
1929 3677 9.241919 ACTCAAACCATCACATATGAATAAACA 57.758 29.630 10.38 0.00 38.69 2.83
1932 3680 9.241919 ACAACTCAAACCATCACATATGAATAA 57.758 29.630 10.38 0.00 38.69 1.40
1933 3681 8.806429 ACAACTCAAACCATCACATATGAATA 57.194 30.769 10.38 0.00 38.69 1.75
1934 3682 7.707624 ACAACTCAAACCATCACATATGAAT 57.292 32.000 10.38 0.00 38.69 2.57
1935 3683 7.336679 CCTACAACTCAAACCATCACATATGAA 59.663 37.037 10.38 0.00 38.69 2.57
1936 3684 6.823182 CCTACAACTCAAACCATCACATATGA 59.177 38.462 10.38 0.00 39.83 2.15
1937 3685 6.823182 TCCTACAACTCAAACCATCACATATG 59.177 38.462 0.00 0.00 0.00 1.78
1938 3686 6.957631 TCCTACAACTCAAACCATCACATAT 58.042 36.000 0.00 0.00 0.00 1.78
1939 3687 6.367374 TCCTACAACTCAAACCATCACATA 57.633 37.500 0.00 0.00 0.00 2.29
1940 3688 5.241403 TCCTACAACTCAAACCATCACAT 57.759 39.130 0.00 0.00 0.00 3.21
1941 3689 4.698201 TCCTACAACTCAAACCATCACA 57.302 40.909 0.00 0.00 0.00 3.58
1942 3690 6.381801 CATTTCCTACAACTCAAACCATCAC 58.618 40.000 0.00 0.00 0.00 3.06
1943 3691 5.048083 GCATTTCCTACAACTCAAACCATCA 60.048 40.000 0.00 0.00 0.00 3.07
1944 3692 5.048083 TGCATTTCCTACAACTCAAACCATC 60.048 40.000 0.00 0.00 0.00 3.51
1945 3693 4.832266 TGCATTTCCTACAACTCAAACCAT 59.168 37.500 0.00 0.00 0.00 3.55
1946 3694 4.211125 TGCATTTCCTACAACTCAAACCA 58.789 39.130 0.00 0.00 0.00 3.67
1947 3695 4.846779 TGCATTTCCTACAACTCAAACC 57.153 40.909 0.00 0.00 0.00 3.27
1948 3696 7.702348 GGATTATGCATTTCCTACAACTCAAAC 59.298 37.037 17.07 0.00 0.00 2.93
1949 3697 7.615365 AGGATTATGCATTTCCTACAACTCAAA 59.385 33.333 22.77 0.92 38.11 2.69
1950 3698 7.118723 AGGATTATGCATTTCCTACAACTCAA 58.881 34.615 22.77 1.32 38.11 3.02
1951 3699 6.662755 AGGATTATGCATTTCCTACAACTCA 58.337 36.000 22.77 0.00 38.11 3.41
1958 3706 5.560724 GCAGGTAGGATTATGCATTTCCTA 58.439 41.667 24.04 24.04 40.37 2.94
1959 3707 4.401925 GCAGGTAGGATTATGCATTTCCT 58.598 43.478 25.59 25.59 42.49 3.36
1960 3708 3.189287 CGCAGGTAGGATTATGCATTTCC 59.811 47.826 16.76 16.76 38.60 3.13
1961 3709 4.410492 CGCAGGTAGGATTATGCATTTC 57.590 45.455 3.54 2.35 38.60 2.17
2007 3755 6.662755 TGCATTTCCTATGACTCCAACTATT 58.337 36.000 0.00 0.00 0.00 1.73
2020 3768 7.556844 CGTAGGTAGGATTATGCATTTCCTAT 58.443 38.462 27.67 19.98 42.51 2.57
2043 3791 7.552687 ACATATGATTAAACATCACTTCACCGT 59.447 33.333 10.38 0.00 0.00 4.83
2073 3821 4.640771 TGCATTTTCTAGGACTCCAACT 57.359 40.909 0.00 0.00 0.00 3.16
2082 3830 6.150140 GCAGGTAGGATTATGCATTTTCTAGG 59.850 42.308 3.54 0.00 38.54 3.02
2083 3831 6.128445 CGCAGGTAGGATTATGCATTTTCTAG 60.128 42.308 3.54 0.00 38.60 2.43
2087 3835 4.836125 CGCAGGTAGGATTATGCATTTT 57.164 40.909 3.54 0.00 38.60 1.82
2133 3881 5.163301 TGCATTTCCTAGGACTCCAACTATC 60.163 44.000 12.22 0.00 0.00 2.08
2160 3908 3.505680 TGTGCCAATAAGAACACATGGAC 59.494 43.478 0.00 0.00 38.07 4.02
2215 3966 4.631131 TGATATGGCTTCACCTATGTTCG 58.369 43.478 0.00 0.00 40.22 3.95
2220 3971 5.805751 GCAAGGATGATATGGCTTCACCTAT 60.806 44.000 0.00 0.00 40.22 2.57
2387 4138 6.650807 TCAACTATAGACAGCCTTTTCAAGTG 59.349 38.462 6.78 0.00 0.00 3.16
2422 4173 6.759497 ACTCTAGCCATTTTCAATACAACC 57.241 37.500 0.00 0.00 0.00 3.77
2440 4191 7.755591 ACGTACAAATTATCACGAGAACTCTA 58.244 34.615 11.25 0.00 37.80 2.43
2633 4384 3.351740 TCCGCTTGAATTATTCTTGGCA 58.648 40.909 6.50 0.00 0.00 4.92
2692 4444 5.005971 CGTACGGAAAGTATGTAAATGTGGG 59.994 44.000 7.57 0.00 37.51 4.61
2735 4487 7.827236 TCCAGGATACGACAAAACTCAAATAAT 59.173 33.333 0.00 0.00 46.39 1.28
2760 4512 6.527722 TGAATTGATTCTTAACGCAAGCAATC 59.472 34.615 5.42 11.41 38.18 2.67
2988 4740 6.037172 ACAAAACTGATAAAGCTAGGCATACG 59.963 38.462 0.00 0.00 0.00 3.06
2992 4744 7.938140 ATAACAAAACTGATAAAGCTAGGCA 57.062 32.000 0.00 0.00 0.00 4.75
3039 4791 5.858049 TGAAATGATTCTTAACGCAAAGCAG 59.142 36.000 0.00 0.00 36.48 4.24
3128 4885 2.371306 ACAAAACCAACTAAGGCACGT 58.629 42.857 0.00 0.00 0.00 4.49
3140 4897 7.062371 CACGACAAAACTCAAATAACAAAACCA 59.938 33.333 0.00 0.00 0.00 3.67
3238 5134 9.764363 GTATGGAAAGTACATAGATGTGATCAA 57.236 33.333 0.00 0.00 41.89 2.57
3298 5194 3.058016 CACAAGCAATTCAGGACACGATT 60.058 43.478 0.00 0.00 0.00 3.34
3299 5195 2.485426 CACAAGCAATTCAGGACACGAT 59.515 45.455 0.00 0.00 0.00 3.73
3343 5239 9.573133 AACAGCAGAATTAATTAATAACTGCAC 57.427 29.630 37.06 24.83 46.30 4.57
3389 5429 4.275810 AGCTAGGTGTACGGAAAGTATGA 58.724 43.478 0.00 0.00 37.69 2.15
3404 5444 7.933215 AATAACAAAACCGATAAAGCTAGGT 57.067 32.000 0.00 0.00 38.88 3.08
3438 5478 1.068055 GGCAAGCAATTCTGGACACAG 60.068 52.381 0.00 0.00 46.30 3.66
3439 5479 0.961019 GGCAAGCAATTCTGGACACA 59.039 50.000 0.00 0.00 0.00 3.72
3508 5548 6.170506 GGAAAGTACATACATGTGGACTGAA 58.829 40.000 9.11 0.00 41.89 3.02
3560 5874 3.750639 TGGACACGACAAAACTCAAAC 57.249 42.857 0.00 0.00 0.00 2.93
3795 6187 8.606830 ACTAGGAGTCCACTTGAATTTATTCTT 58.393 33.333 12.86 0.00 37.67 2.52
3854 6246 7.875327 AATAACAAGGCATACGGAAAATACT 57.125 32.000 0.00 0.00 0.00 2.12
3867 6259 9.303537 GTACAACAAAACTTAAATAACAAGGCA 57.696 29.630 0.00 0.00 0.00 4.75
3949 6345 6.890979 ATAGGCTTGAATTTGCTCTTATCC 57.109 37.500 0.00 0.00 0.00 2.59
4358 6917 6.306356 CACAAGCAAAATGATGTAACTAGCAC 59.694 38.462 0.00 0.00 0.00 4.40
4361 6920 7.584108 TCACACAAGCAAAATGATGTAACTAG 58.416 34.615 0.00 0.00 0.00 2.57
4483 7042 3.153369 TGCATTACATGGTGTGGTTCT 57.847 42.857 0.00 0.00 0.00 3.01
4516 7075 5.648572 CATTCTCTTCCTTCCATGCTTTTC 58.351 41.667 0.00 0.00 0.00 2.29
4560 7119 7.913674 ATTCCAGAACAGATACAAAGACTTC 57.086 36.000 0.00 0.00 0.00 3.01
4651 7211 6.367969 CCTTTAGTGTTACGTACTGCAGAAAT 59.632 38.462 23.35 0.00 0.00 2.17
4657 7217 6.716898 AAATCCTTTAGTGTTACGTACTGC 57.283 37.500 0.00 0.00 0.00 4.40
4707 7270 8.975439 GCATGGAAGATAAATAATGCTGAAAAG 58.025 33.333 0.00 0.00 37.89 2.27
4886 7640 1.419762 TCAGCCTTTTGTGCCACTCTA 59.580 47.619 0.00 0.00 0.00 2.43
5106 8054 2.697431 TGCAAGATAACACGCAAACC 57.303 45.000 0.00 0.00 0.00 3.27
5236 8184 7.514784 ACGTAACTTAGGCTACCAAATTTTT 57.485 32.000 0.00 0.00 0.00 1.94
5237 8185 8.797350 ATACGTAACTTAGGCTACCAAATTTT 57.203 30.769 0.00 0.00 0.00 1.82
5238 8186 8.797350 AATACGTAACTTAGGCTACCAAATTT 57.203 30.769 0.00 0.00 0.00 1.82
5239 8187 7.223387 CGAATACGTAACTTAGGCTACCAAATT 59.777 37.037 0.00 0.00 34.56 1.82
5240 8188 6.698766 CGAATACGTAACTTAGGCTACCAAAT 59.301 38.462 0.00 0.00 34.56 2.32
5248 8196 6.817270 TGAAATCGAATACGTAACTTAGGC 57.183 37.500 0.00 0.00 40.69 3.93
5267 8215 5.240623 AGCCACACAGAAAACGAATATGAAA 59.759 36.000 0.00 0.00 0.00 2.69
5276 8224 2.875933 TCCTAAAGCCACACAGAAAACG 59.124 45.455 0.00 0.00 0.00 3.60
5313 8261 5.467735 TGCTCCTCTAAACGGAAAAACTTAC 59.532 40.000 0.00 0.00 0.00 2.34
5341 8289 5.181009 CAGATTCAGCAGAGGTACATGAAA 58.819 41.667 0.00 0.00 33.91 2.69
5353 8301 1.213678 TGGGGAATCCAGATTCAGCAG 59.786 52.381 19.27 0.00 46.77 4.24
5526 8479 5.801350 TCACAATGCATAGAACTTGTAGC 57.199 39.130 0.00 0.00 31.01 3.58
5557 8510 9.386010 AGTGCATTGCAACAAATAATAATGAAT 57.614 25.926 13.94 0.00 41.47 2.57
5560 8513 7.254522 GGGAGTGCATTGCAACAAATAATAATG 60.255 37.037 13.94 0.00 41.47 1.90
5607 8560 5.048083 TGCAGAACCTGTAACATGAAATTCC 60.048 40.000 0.00 0.00 33.43 3.01
5608 8561 6.012658 TGCAGAACCTGTAACATGAAATTC 57.987 37.500 0.00 0.00 33.43 2.17
5692 8645 1.840635 AGCTCTGGGTCAAATAGGGAC 59.159 52.381 0.00 0.00 34.52 4.46
5995 8948 1.556373 CCTGATGAGTGGGTGCTGGA 61.556 60.000 0.00 0.00 0.00 3.86
6151 9104 2.746362 GGATTCTTCTTGAGGTGCACTG 59.254 50.000 17.98 2.65 0.00 3.66
6283 9236 4.221422 GTATCGCTGCCGGGCTCA 62.221 66.667 21.46 0.00 34.56 4.26
6289 9242 0.109086 CCTCTATGGTATCGCTGCCG 60.109 60.000 0.00 0.00 0.00 5.69
6367 9320 3.797256 CGACCGACCTAATCATCTTTCAC 59.203 47.826 0.00 0.00 0.00 3.18
6631 9587 3.369546 AAACGAAGCAAAACCTCCATG 57.630 42.857 0.00 0.00 0.00 3.66
6708 9664 5.233050 CGTGAGCCTTCATACTCTAAACATG 59.767 44.000 0.00 0.00 35.39 3.21
6739 11302 1.133668 AGCATTTCCTCCATACCCTGC 60.134 52.381 0.00 0.00 0.00 4.85
6740 11303 2.173356 TCAGCATTTCCTCCATACCCTG 59.827 50.000 0.00 0.00 0.00 4.45
6741 11304 2.492025 TCAGCATTTCCTCCATACCCT 58.508 47.619 0.00 0.00 0.00 4.34
6767 11333 0.815615 GATTGATCCACCAGCGGGAC 60.816 60.000 10.86 0.00 37.23 4.46
6786 11352 9.760660 CGTCTATGATTCCTTTTAGAAACTTTG 57.239 33.333 0.00 0.00 0.00 2.77
6787 11353 9.720769 TCGTCTATGATTCCTTTTAGAAACTTT 57.279 29.630 0.00 0.00 0.00 2.66
6788 11354 9.892130 ATCGTCTATGATTCCTTTTAGAAACTT 57.108 29.630 0.00 0.00 0.00 2.66
6853 11423 8.421784 AGGACACACAAGATAATGTATATTCGT 58.578 33.333 0.00 0.00 30.84 3.85
6862 11432 4.256110 TCTGCAGGACACACAAGATAATG 58.744 43.478 15.13 0.00 0.00 1.90
6931 11501 2.732016 GGTGGGCAAAACGAACCC 59.268 61.111 0.00 0.00 44.52 4.11
7027 11597 1.747924 TCTCCAGATCTTCAGCGAGTG 59.252 52.381 0.00 0.00 0.00 3.51
7033 11603 1.202498 TGCGCATCTCCAGATCTTCAG 60.202 52.381 5.66 0.00 31.21 3.02
7252 11925 4.373116 CACTACACGGGCGCAGGT 62.373 66.667 10.83 2.53 0.00 4.00
7253 11926 4.373116 ACACTACACGGGCGCAGG 62.373 66.667 10.83 1.73 0.00 4.85
7254 11927 2.835701 ATCACACTACACGGGCGCAG 62.836 60.000 10.83 4.90 0.00 5.18
7255 11928 2.938086 ATCACACTACACGGGCGCA 61.938 57.895 10.83 0.00 0.00 6.09
7256 11929 2.125673 ATCACACTACACGGGCGC 60.126 61.111 0.00 0.00 0.00 6.53
7257 11930 1.080093 ACATCACACTACACGGGCG 60.080 57.895 0.00 0.00 0.00 6.13
7258 11931 1.019278 CCACATCACACTACACGGGC 61.019 60.000 0.00 0.00 0.00 6.13
7259 11932 1.019278 GCCACATCACACTACACGGG 61.019 60.000 0.00 0.00 0.00 5.28
7266 11939 0.246635 GTACGAGGCCACATCACACT 59.753 55.000 5.01 0.00 0.00 3.55
7268 11941 1.594833 GGTACGAGGCCACATCACA 59.405 57.895 5.01 0.00 0.00 3.58
7561 12234 2.356313 ACGCACCGCTGAACTGAG 60.356 61.111 0.00 0.00 0.00 3.35
7579 12252 0.745845 TCCTCAGGTCGTACGTAGGC 60.746 60.000 16.05 5.89 0.00 3.93
7588 12261 3.303132 CGTGTTTTCTTTTCCTCAGGTCG 60.303 47.826 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.