Multiple sequence alignment - TraesCS3A01G365600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G365600 chr3A 100.000 2678 0 0 1 2678 614707295 614709972 0.000000e+00 4946.0
1 TraesCS3A01G365600 chr3A 88.068 176 17 4 2398 2571 104554574 104554401 3.490000e-49 206.0
2 TraesCS3A01G365600 chr3A 94.444 54 3 0 2086 2139 8602175 8602122 1.710000e-12 84.2
3 TraesCS3A01G365600 chr3A 97.436 39 1 0 2099 2137 387783848 387783810 1.720000e-07 67.6
4 TraesCS3A01G365600 chr3D 92.353 1190 60 19 582 1768 472202657 472203818 0.000000e+00 1664.0
5 TraesCS3A01G365600 chr3D 95.037 544 24 3 2136 2678 472204096 472204637 0.000000e+00 852.0
6 TraesCS3A01G365600 chr3D 85.165 182 26 1 1000 1180 472208416 472208597 4.550000e-43 185.0
7 TraesCS3A01G365600 chr3D 97.500 40 1 0 2099 2138 68251701 68251740 4.780000e-08 69.4
8 TraesCS3A01G365600 chr3D 100.000 34 0 0 2104 2137 514650510 514650477 2.230000e-06 63.9
9 TraesCS3A01G365600 chr3B 91.120 1250 62 18 540 1768 627748138 627749359 0.000000e+00 1648.0
10 TraesCS3A01G365600 chr3B 92.827 474 31 3 2206 2678 627751904 627752375 0.000000e+00 684.0
11 TraesCS3A01G365600 chr3B 94.014 284 14 3 1814 2094 627749843 627750126 6.850000e-116 427.0
12 TraesCS3A01G365600 chr3B 84.574 188 22 7 2398 2582 137599755 137599572 2.120000e-41 180.0
13 TraesCS3A01G365600 chr3B 89.474 133 13 1 412 544 635020559 635020690 1.650000e-37 167.0
14 TraesCS3A01G365600 chr3B 86.667 135 18 0 409 543 207205454 207205320 1.660000e-32 150.0
15 TraesCS3A01G365600 chr6D 90.355 197 17 2 2407 2602 272632893 272632698 9.510000e-65 257.0
16 TraesCS3A01G365600 chr4D 90.050 201 17 3 2404 2602 483592773 483592574 9.510000e-65 257.0
17 TraesCS3A01G365600 chr5B 92.593 135 8 2 411 544 396461274 396461141 2.720000e-45 193.0
18 TraesCS3A01G365600 chr5D 88.679 159 15 3 2401 2558 203885454 203885610 9.790000e-45 191.0
19 TraesCS3A01G365600 chr5D 84.444 135 17 4 411 544 170266307 170266438 2.160000e-26 130.0
20 TraesCS3A01G365600 chr6A 85.311 177 23 3 2407 2582 249878372 249878546 2.120000e-41 180.0
21 TraesCS3A01G365600 chr2B 85.311 177 23 3 2407 2582 767420124 767420298 2.120000e-41 180.0
22 TraesCS3A01G365600 chr7B 91.406 128 11 0 411 538 200021139 200021266 2.740000e-40 176.0
23 TraesCS3A01G365600 chr1B 92.308 91 7 0 452 542 341931997 341931907 2.160000e-26 130.0
24 TraesCS3A01G365600 chr1B 97.561 41 1 0 2098 2138 329216385 329216345 1.330000e-08 71.3
25 TraesCS3A01G365600 chr6B 100.000 37 0 0 2104 2140 191530505 191530469 4.780000e-08 69.4
26 TraesCS3A01G365600 chr4B 100.000 37 0 0 2104 2140 296156774 296156810 4.780000e-08 69.4
27 TraesCS3A01G365600 chr4A 100.000 37 0 0 2104 2140 542273974 542274010 4.780000e-08 69.4
28 TraesCS3A01G365600 chr1D 97.500 40 1 0 2099 2138 92133039 92133078 4.780000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G365600 chr3A 614707295 614709972 2677 False 4946.000000 4946 100.000000 1 2678 1 chr3A.!!$F1 2677
1 TraesCS3A01G365600 chr3D 472202657 472208597 5940 False 900.333333 1664 90.851667 582 2678 3 chr3D.!!$F2 2096
2 TraesCS3A01G365600 chr3B 627748138 627752375 4237 False 919.666667 1648 92.653667 540 2678 3 chr3B.!!$F2 2138

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 0.03467 AGGTCTCTGAAAGCCCATGC 60.035 55.0 0.0 0.0 37.95 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1803 1853 1.077501 CGTCCAGGGCCATGTCAAT 60.078 57.895 17.55 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.744316 CCGTACTGGGCGTAATCC 57.256 61.111 0.00 0.00 0.00 3.01
18 19 1.817881 CCGTACTGGGCGTAATCCA 59.182 57.895 0.00 0.00 0.00 3.41
19 20 0.176219 CCGTACTGGGCGTAATCCAA 59.824 55.000 0.00 0.00 33.36 3.53
20 21 1.405797 CCGTACTGGGCGTAATCCAAA 60.406 52.381 0.00 0.00 33.36 3.28
21 22 1.662122 CGTACTGGGCGTAATCCAAAC 59.338 52.381 0.00 0.00 33.36 2.93
22 23 2.702261 GTACTGGGCGTAATCCAAACA 58.298 47.619 0.00 0.00 33.36 2.83
23 24 2.279935 ACTGGGCGTAATCCAAACAA 57.720 45.000 0.00 0.00 33.36 2.83
24 25 1.883926 ACTGGGCGTAATCCAAACAAC 59.116 47.619 0.00 0.00 33.36 3.32
25 26 1.201414 CTGGGCGTAATCCAAACAACC 59.799 52.381 0.00 0.00 33.36 3.77
26 27 0.528924 GGGCGTAATCCAAACAACCC 59.471 55.000 0.00 0.00 0.00 4.11
27 28 0.528924 GGCGTAATCCAAACAACCCC 59.471 55.000 0.00 0.00 0.00 4.95
28 29 1.541379 GCGTAATCCAAACAACCCCT 58.459 50.000 0.00 0.00 0.00 4.79
29 30 1.890489 GCGTAATCCAAACAACCCCTT 59.110 47.619 0.00 0.00 0.00 3.95
30 31 3.083293 GCGTAATCCAAACAACCCCTTA 58.917 45.455 0.00 0.00 0.00 2.69
31 32 3.506844 GCGTAATCCAAACAACCCCTTAA 59.493 43.478 0.00 0.00 0.00 1.85
32 33 4.158949 GCGTAATCCAAACAACCCCTTAAT 59.841 41.667 0.00 0.00 0.00 1.40
33 34 5.677852 GCGTAATCCAAACAACCCCTTAATC 60.678 44.000 0.00 0.00 0.00 1.75
34 35 5.163591 CGTAATCCAAACAACCCCTTAATCC 60.164 44.000 0.00 0.00 0.00 3.01
35 36 4.692523 ATCCAAACAACCCCTTAATCCT 57.307 40.909 0.00 0.00 0.00 3.24
36 37 4.479156 TCCAAACAACCCCTTAATCCTT 57.521 40.909 0.00 0.00 0.00 3.36
37 38 5.602291 TCCAAACAACCCCTTAATCCTTA 57.398 39.130 0.00 0.00 0.00 2.69
38 39 6.160483 TCCAAACAACCCCTTAATCCTTAT 57.840 37.500 0.00 0.00 0.00 1.73
39 40 7.286667 TCCAAACAACCCCTTAATCCTTATA 57.713 36.000 0.00 0.00 0.00 0.98
40 41 7.351166 TCCAAACAACCCCTTAATCCTTATAG 58.649 38.462 0.00 0.00 0.00 1.31
41 42 6.040504 CCAAACAACCCCTTAATCCTTATAGC 59.959 42.308 0.00 0.00 0.00 2.97
42 43 5.987019 ACAACCCCTTAATCCTTATAGCA 57.013 39.130 0.00 0.00 0.00 3.49
43 44 5.941788 ACAACCCCTTAATCCTTATAGCAG 58.058 41.667 0.00 0.00 0.00 4.24
44 45 4.642466 ACCCCTTAATCCTTATAGCAGC 57.358 45.455 0.00 0.00 0.00 5.25
45 46 3.330998 ACCCCTTAATCCTTATAGCAGCC 59.669 47.826 0.00 0.00 0.00 4.85
46 47 3.589288 CCCCTTAATCCTTATAGCAGCCT 59.411 47.826 0.00 0.00 0.00 4.58
47 48 4.323868 CCCCTTAATCCTTATAGCAGCCTC 60.324 50.000 0.00 0.00 0.00 4.70
48 49 4.323868 CCCTTAATCCTTATAGCAGCCTCC 60.324 50.000 0.00 0.00 0.00 4.30
49 50 4.287067 CCTTAATCCTTATAGCAGCCTCCA 59.713 45.833 0.00 0.00 0.00 3.86
50 51 3.778954 AATCCTTATAGCAGCCTCCAC 57.221 47.619 0.00 0.00 0.00 4.02
51 52 1.424638 TCCTTATAGCAGCCTCCACC 58.575 55.000 0.00 0.00 0.00 4.61
52 53 0.398318 CCTTATAGCAGCCTCCACCC 59.602 60.000 0.00 0.00 0.00 4.61
53 54 1.428869 CTTATAGCAGCCTCCACCCT 58.571 55.000 0.00 0.00 0.00 4.34
54 55 1.771255 CTTATAGCAGCCTCCACCCTT 59.229 52.381 0.00 0.00 0.00 3.95
55 56 1.131638 TATAGCAGCCTCCACCCTTG 58.868 55.000 0.00 0.00 0.00 3.61
56 57 2.276309 ATAGCAGCCTCCACCCTTGC 62.276 60.000 0.00 0.00 35.09 4.01
57 58 4.357279 GCAGCCTCCACCCTTGCT 62.357 66.667 0.00 0.00 33.52 3.91
58 59 2.437897 CAGCCTCCACCCTTGCTT 59.562 61.111 0.00 0.00 30.08 3.91
59 60 1.676967 CAGCCTCCACCCTTGCTTC 60.677 63.158 0.00 0.00 30.08 3.86
60 61 2.747855 GCCTCCACCCTTGCTTCG 60.748 66.667 0.00 0.00 0.00 3.79
61 62 2.750350 CCTCCACCCTTGCTTCGT 59.250 61.111 0.00 0.00 0.00 3.85
62 63 1.980052 CCTCCACCCTTGCTTCGTA 59.020 57.895 0.00 0.00 0.00 3.43
63 64 0.323629 CCTCCACCCTTGCTTCGTAA 59.676 55.000 0.00 0.00 0.00 3.18
64 65 1.676014 CCTCCACCCTTGCTTCGTAAG 60.676 57.143 0.00 0.00 0.00 2.34
103 104 6.809630 AAACAATTAGAGGTCTCTGAAAGC 57.190 37.500 10.50 0.00 40.71 3.51
104 105 4.837972 ACAATTAGAGGTCTCTGAAAGCC 58.162 43.478 10.50 0.00 40.71 4.35
105 106 4.195416 CAATTAGAGGTCTCTGAAAGCCC 58.805 47.826 10.50 0.00 40.71 5.19
106 107 2.623418 TAGAGGTCTCTGAAAGCCCA 57.377 50.000 10.50 0.00 40.71 5.36
107 108 1.963985 AGAGGTCTCTGAAAGCCCAT 58.036 50.000 0.00 0.00 38.75 4.00
108 109 1.558756 AGAGGTCTCTGAAAGCCCATG 59.441 52.381 0.00 0.00 38.75 3.66
109 110 0.034670 AGGTCTCTGAAAGCCCATGC 60.035 55.000 0.00 0.00 37.95 4.06
110 111 1.034292 GGTCTCTGAAAGCCCATGCC 61.034 60.000 0.00 0.00 38.69 4.40
111 112 0.322816 GTCTCTGAAAGCCCATGCCA 60.323 55.000 0.00 0.00 38.69 4.92
112 113 0.322816 TCTCTGAAAGCCCATGCCAC 60.323 55.000 0.00 0.00 38.69 5.01
113 114 1.304381 TCTGAAAGCCCATGCCACC 60.304 57.895 0.00 0.00 38.69 4.61
114 115 1.607178 CTGAAAGCCCATGCCACCA 60.607 57.895 0.00 0.00 38.69 4.17
115 116 1.601419 CTGAAAGCCCATGCCACCAG 61.601 60.000 0.00 0.00 38.69 4.00
116 117 2.999063 AAAGCCCATGCCACCAGC 60.999 61.111 0.00 0.00 44.14 4.85
125 126 3.357079 GCCACCAGCACACTTCGG 61.357 66.667 0.00 0.00 42.97 4.30
126 127 2.669569 CCACCAGCACACTTCGGG 60.670 66.667 0.00 0.00 0.00 5.14
127 128 2.111043 CACCAGCACACTTCGGGT 59.889 61.111 0.00 0.00 32.23 5.28
128 129 1.369692 CACCAGCACACTTCGGGTA 59.630 57.895 0.00 0.00 30.91 3.69
129 130 0.949105 CACCAGCACACTTCGGGTAC 60.949 60.000 0.00 0.00 30.91 3.34
145 146 3.729862 GGTACCACTATGTCTAGCCAC 57.270 52.381 7.15 0.00 0.00 5.01
146 147 3.297736 GGTACCACTATGTCTAGCCACT 58.702 50.000 7.15 0.00 0.00 4.00
147 148 3.705072 GGTACCACTATGTCTAGCCACTT 59.295 47.826 7.15 0.00 0.00 3.16
148 149 4.161754 GGTACCACTATGTCTAGCCACTTT 59.838 45.833 7.15 0.00 0.00 2.66
149 150 4.207891 ACCACTATGTCTAGCCACTTTG 57.792 45.455 0.00 0.00 0.00 2.77
150 151 3.583086 ACCACTATGTCTAGCCACTTTGT 59.417 43.478 0.00 0.00 0.00 2.83
151 152 4.184629 CCACTATGTCTAGCCACTTTGTC 58.815 47.826 0.00 0.00 0.00 3.18
152 153 4.081420 CCACTATGTCTAGCCACTTTGTCT 60.081 45.833 0.00 0.00 0.00 3.41
153 154 5.127194 CCACTATGTCTAGCCACTTTGTCTA 59.873 44.000 0.00 0.00 0.00 2.59
154 155 6.351033 CCACTATGTCTAGCCACTTTGTCTAA 60.351 42.308 0.00 0.00 0.00 2.10
155 156 7.268586 CACTATGTCTAGCCACTTTGTCTAAT 58.731 38.462 0.00 0.00 0.00 1.73
156 157 7.223582 CACTATGTCTAGCCACTTTGTCTAATG 59.776 40.741 0.00 0.00 0.00 1.90
157 158 4.253685 TGTCTAGCCACTTTGTCTAATGC 58.746 43.478 0.00 0.00 0.00 3.56
158 159 4.253685 GTCTAGCCACTTTGTCTAATGCA 58.746 43.478 0.00 0.00 0.00 3.96
159 160 4.093556 GTCTAGCCACTTTGTCTAATGCAC 59.906 45.833 0.00 0.00 0.00 4.57
160 161 2.162681 AGCCACTTTGTCTAATGCACC 58.837 47.619 0.00 0.00 0.00 5.01
161 162 2.162681 GCCACTTTGTCTAATGCACCT 58.837 47.619 0.00 0.00 0.00 4.00
162 163 2.558359 GCCACTTTGTCTAATGCACCTT 59.442 45.455 0.00 0.00 0.00 3.50
163 164 3.366374 GCCACTTTGTCTAATGCACCTTC 60.366 47.826 0.00 0.00 0.00 3.46
164 165 3.191371 CCACTTTGTCTAATGCACCTTCC 59.809 47.826 0.00 0.00 0.00 3.46
165 166 3.074412 ACTTTGTCTAATGCACCTTCCG 58.926 45.455 0.00 0.00 0.00 4.30
166 167 1.448985 TTGTCTAATGCACCTTCCGC 58.551 50.000 0.00 0.00 0.00 5.54
167 168 0.613260 TGTCTAATGCACCTTCCGCT 59.387 50.000 0.00 0.00 0.00 5.52
168 169 1.003118 TGTCTAATGCACCTTCCGCTT 59.997 47.619 0.00 0.00 0.00 4.68
169 170 1.398390 GTCTAATGCACCTTCCGCTTG 59.602 52.381 0.00 0.00 0.00 4.01
170 171 1.003118 TCTAATGCACCTTCCGCTTGT 59.997 47.619 0.00 0.00 0.00 3.16
171 172 1.131126 CTAATGCACCTTCCGCTTGTG 59.869 52.381 0.00 0.00 0.00 3.33
174 175 3.365265 CACCTTCCGCTTGTGCCC 61.365 66.667 0.00 0.00 35.36 5.36
177 178 3.423154 CTTCCGCTTGTGCCCGTC 61.423 66.667 0.00 0.00 35.36 4.79
178 179 3.883744 CTTCCGCTTGTGCCCGTCT 62.884 63.158 0.00 0.00 35.36 4.18
179 180 3.469863 TTCCGCTTGTGCCCGTCTT 62.470 57.895 0.00 0.00 35.36 3.01
180 181 3.423154 CCGCTTGTGCCCGTCTTC 61.423 66.667 0.00 0.00 35.36 2.87
181 182 2.357517 CGCTTGTGCCCGTCTTCT 60.358 61.111 0.00 0.00 35.36 2.85
182 183 2.383527 CGCTTGTGCCCGTCTTCTC 61.384 63.158 0.00 0.00 35.36 2.87
183 184 2.035442 GCTTGTGCCCGTCTTCTCC 61.035 63.158 0.00 0.00 0.00 3.71
184 185 1.376037 CTTGTGCCCGTCTTCTCCC 60.376 63.158 0.00 0.00 0.00 4.30
185 186 2.804828 CTTGTGCCCGTCTTCTCCCC 62.805 65.000 0.00 0.00 0.00 4.81
186 187 3.319198 GTGCCCGTCTTCTCCCCA 61.319 66.667 0.00 0.00 0.00 4.96
187 188 3.319198 TGCCCGTCTTCTCCCCAC 61.319 66.667 0.00 0.00 0.00 4.61
188 189 4.097361 GCCCGTCTTCTCCCCACC 62.097 72.222 0.00 0.00 0.00 4.61
189 190 2.606519 CCCGTCTTCTCCCCACCA 60.607 66.667 0.00 0.00 0.00 4.17
190 191 2.221299 CCCGTCTTCTCCCCACCAA 61.221 63.158 0.00 0.00 0.00 3.67
191 192 1.758592 CCGTCTTCTCCCCACCAAA 59.241 57.895 0.00 0.00 0.00 3.28
192 193 0.109723 CCGTCTTCTCCCCACCAAAA 59.890 55.000 0.00 0.00 0.00 2.44
193 194 1.235724 CGTCTTCTCCCCACCAAAAC 58.764 55.000 0.00 0.00 0.00 2.43
194 195 1.617322 GTCTTCTCCCCACCAAAACC 58.383 55.000 0.00 0.00 0.00 3.27
195 196 0.109723 TCTTCTCCCCACCAAAACCG 59.890 55.000 0.00 0.00 0.00 4.44
196 197 0.179001 CTTCTCCCCACCAAAACCGT 60.179 55.000 0.00 0.00 0.00 4.83
197 198 0.466555 TTCTCCCCACCAAAACCGTG 60.467 55.000 0.00 0.00 0.00 4.94
198 199 2.519780 TCCCCACCAAAACCGTGC 60.520 61.111 0.00 0.00 0.00 5.34
199 200 3.611674 CCCCACCAAAACCGTGCC 61.612 66.667 0.00 0.00 0.00 5.01
200 201 2.835431 CCCACCAAAACCGTGCCA 60.835 61.111 0.00 0.00 0.00 4.92
201 202 2.415426 CCACCAAAACCGTGCCAC 59.585 61.111 0.00 0.00 0.00 5.01
202 203 2.418910 CCACCAAAACCGTGCCACA 61.419 57.895 0.00 0.00 0.00 4.17
203 204 1.513158 CACCAAAACCGTGCCACAA 59.487 52.632 0.00 0.00 0.00 3.33
204 205 0.804156 CACCAAAACCGTGCCACAAC 60.804 55.000 0.00 0.00 0.00 3.32
205 206 1.587613 CCAAAACCGTGCCACAACG 60.588 57.895 0.00 0.00 43.20 4.10
206 207 1.137825 CAAAACCGTGCCACAACGT 59.862 52.632 0.00 0.00 42.01 3.99
207 208 0.456995 CAAAACCGTGCCACAACGTT 60.457 50.000 0.00 0.00 42.01 3.99
208 209 0.179158 AAAACCGTGCCACAACGTTC 60.179 50.000 0.00 0.00 42.01 3.95
209 210 2.312398 AAACCGTGCCACAACGTTCG 62.312 55.000 0.00 0.00 42.01 3.95
210 211 4.659874 CCGTGCCACAACGTTCGC 62.660 66.667 0.00 0.69 42.01 4.70
211 212 3.931130 CGTGCCACAACGTTCGCA 61.931 61.111 9.51 9.51 38.74 5.10
212 213 2.405594 GTGCCACAACGTTCGCAA 59.594 55.556 13.97 0.00 32.04 4.85
213 214 1.008995 GTGCCACAACGTTCGCAAT 60.009 52.632 13.97 0.00 32.04 3.56
214 215 0.996727 GTGCCACAACGTTCGCAATC 60.997 55.000 13.97 2.27 32.04 2.67
215 216 1.163420 TGCCACAACGTTCGCAATCT 61.163 50.000 10.83 0.00 0.00 2.40
216 217 0.452784 GCCACAACGTTCGCAATCTC 60.453 55.000 0.00 0.00 0.00 2.75
217 218 1.148310 CCACAACGTTCGCAATCTCT 58.852 50.000 0.00 0.00 0.00 3.10
218 219 1.531149 CCACAACGTTCGCAATCTCTT 59.469 47.619 0.00 0.00 0.00 2.85
219 220 2.563976 CACAACGTTCGCAATCTCTTG 58.436 47.619 0.00 0.00 35.36 3.02
220 221 1.531149 ACAACGTTCGCAATCTCTTGG 59.469 47.619 0.00 0.00 32.72 3.61
221 222 1.531149 CAACGTTCGCAATCTCTTGGT 59.469 47.619 0.00 0.00 32.72 3.67
222 223 1.148310 ACGTTCGCAATCTCTTGGTG 58.852 50.000 0.00 0.00 32.72 4.17
223 224 0.179215 CGTTCGCAATCTCTTGGTGC 60.179 55.000 0.00 0.00 32.72 5.01
224 225 0.874390 GTTCGCAATCTCTTGGTGCA 59.126 50.000 0.00 0.00 38.19 4.57
225 226 0.874390 TTCGCAATCTCTTGGTGCAC 59.126 50.000 8.80 8.80 38.19 4.57
226 227 0.035317 TCGCAATCTCTTGGTGCACT 59.965 50.000 17.98 0.00 38.19 4.40
227 228 0.877071 CGCAATCTCTTGGTGCACTT 59.123 50.000 17.98 0.00 38.19 3.16
228 229 1.135859 CGCAATCTCTTGGTGCACTTC 60.136 52.381 17.98 0.83 38.19 3.01
229 230 1.200948 GCAATCTCTTGGTGCACTTCC 59.799 52.381 17.98 0.00 38.19 3.46
230 231 2.507484 CAATCTCTTGGTGCACTTCCA 58.493 47.619 17.98 3.14 0.00 3.53
231 232 3.087031 CAATCTCTTGGTGCACTTCCAT 58.913 45.455 17.98 0.00 34.75 3.41
232 233 4.264253 CAATCTCTTGGTGCACTTCCATA 58.736 43.478 17.98 0.00 34.75 2.74
233 234 4.785346 ATCTCTTGGTGCACTTCCATAT 57.215 40.909 17.98 1.74 34.75 1.78
234 235 4.574674 TCTCTTGGTGCACTTCCATATT 57.425 40.909 17.98 0.00 34.75 1.28
235 236 5.692115 TCTCTTGGTGCACTTCCATATTA 57.308 39.130 17.98 0.00 34.75 0.98
236 237 6.061022 TCTCTTGGTGCACTTCCATATTAA 57.939 37.500 17.98 0.00 34.75 1.40
237 238 5.880332 TCTCTTGGTGCACTTCCATATTAAC 59.120 40.000 17.98 0.00 34.75 2.01
238 239 5.565509 TCTTGGTGCACTTCCATATTAACA 58.434 37.500 17.98 0.00 34.75 2.41
239 240 6.007076 TCTTGGTGCACTTCCATATTAACAA 58.993 36.000 17.98 6.68 34.75 2.83
240 241 5.637006 TGGTGCACTTCCATATTAACAAC 57.363 39.130 17.98 0.00 0.00 3.32
241 242 5.321102 TGGTGCACTTCCATATTAACAACT 58.679 37.500 17.98 0.00 0.00 3.16
242 243 5.772672 TGGTGCACTTCCATATTAACAACTT 59.227 36.000 17.98 0.00 0.00 2.66
243 244 6.266558 TGGTGCACTTCCATATTAACAACTTT 59.733 34.615 17.98 0.00 0.00 2.66
244 245 7.151976 GGTGCACTTCCATATTAACAACTTTT 58.848 34.615 17.98 0.00 0.00 2.27
245 246 7.328493 GGTGCACTTCCATATTAACAACTTTTC 59.672 37.037 17.98 0.00 0.00 2.29
246 247 7.328493 GTGCACTTCCATATTAACAACTTTTCC 59.672 37.037 10.32 0.00 0.00 3.13
247 248 7.232534 TGCACTTCCATATTAACAACTTTTCCT 59.767 33.333 0.00 0.00 0.00 3.36
248 249 8.088365 GCACTTCCATATTAACAACTTTTCCTT 58.912 33.333 0.00 0.00 0.00 3.36
249 250 9.981114 CACTTCCATATTAACAACTTTTCCTTT 57.019 29.630 0.00 0.00 0.00 3.11
274 275 9.921637 TTTTTAAAACAGAGACATTGACAACTT 57.078 25.926 0.00 0.00 0.00 2.66
275 276 8.909708 TTTAAAACAGAGACATTGACAACTTG 57.090 30.769 0.00 0.00 0.00 3.16
276 277 6.757897 AAAACAGAGACATTGACAACTTGA 57.242 33.333 0.00 0.00 0.00 3.02
277 278 6.757897 AAACAGAGACATTGACAACTTGAA 57.242 33.333 0.00 0.00 0.00 2.69
278 279 6.757897 AACAGAGACATTGACAACTTGAAA 57.242 33.333 0.00 0.00 0.00 2.69
279 280 6.124088 ACAGAGACATTGACAACTTGAAAC 57.876 37.500 0.00 0.00 0.00 2.78
280 281 5.647658 ACAGAGACATTGACAACTTGAAACA 59.352 36.000 0.00 0.00 0.00 2.83
281 282 6.150976 ACAGAGACATTGACAACTTGAAACAA 59.849 34.615 0.00 0.43 0.00 2.83
282 283 6.470235 CAGAGACATTGACAACTTGAAACAAC 59.530 38.462 0.00 0.00 0.00 3.32
283 284 6.375455 AGAGACATTGACAACTTGAAACAACT 59.625 34.615 0.00 0.00 0.00 3.16
284 285 6.555315 AGACATTGACAACTTGAAACAACTC 58.445 36.000 0.00 0.00 0.00 3.01
285 286 6.150976 AGACATTGACAACTTGAAACAACTCA 59.849 34.615 0.00 0.00 0.00 3.41
286 287 6.866480 ACATTGACAACTTGAAACAACTCAT 58.134 32.000 0.00 0.00 0.00 2.90
287 288 7.995289 ACATTGACAACTTGAAACAACTCATA 58.005 30.769 0.00 0.00 0.00 2.15
288 289 8.131100 ACATTGACAACTTGAAACAACTCATAG 58.869 33.333 0.00 0.00 0.00 2.23
289 290 7.857734 TTGACAACTTGAAACAACTCATAGA 57.142 32.000 0.00 0.00 0.00 1.98
290 291 7.857734 TGACAACTTGAAACAACTCATAGAA 57.142 32.000 0.00 0.00 0.00 2.10
291 292 8.450578 TGACAACTTGAAACAACTCATAGAAT 57.549 30.769 0.00 0.00 0.00 2.40
292 293 9.554395 TGACAACTTGAAACAACTCATAGAATA 57.446 29.630 0.00 0.00 0.00 1.75
295 296 9.334693 CAACTTGAAACAACTCATAGAATAAGC 57.665 33.333 0.00 0.00 0.00 3.09
296 297 8.854614 ACTTGAAACAACTCATAGAATAAGCT 57.145 30.769 0.00 0.00 0.00 3.74
297 298 8.725148 ACTTGAAACAACTCATAGAATAAGCTG 58.275 33.333 0.00 0.00 0.00 4.24
298 299 8.846943 TTGAAACAACTCATAGAATAAGCTGA 57.153 30.769 0.00 0.00 0.00 4.26
299 300 8.484641 TGAAACAACTCATAGAATAAGCTGAG 57.515 34.615 0.00 0.00 40.71 3.35
300 301 8.314021 TGAAACAACTCATAGAATAAGCTGAGA 58.686 33.333 5.49 0.00 38.74 3.27
301 302 9.323985 GAAACAACTCATAGAATAAGCTGAGAT 57.676 33.333 5.49 0.00 38.74 2.75
303 304 9.979578 AACAACTCATAGAATAAGCTGAGATAG 57.020 33.333 5.49 0.00 38.74 2.08
343 344 8.801715 TTTTAATCAAGACTTTTCATGACTGC 57.198 30.769 0.00 0.00 32.42 4.40
344 345 7.750229 TTAATCAAGACTTTTCATGACTGCT 57.250 32.000 0.00 0.00 32.42 4.24
345 346 6.645790 AATCAAGACTTTTCATGACTGCTT 57.354 33.333 0.00 0.00 32.42 3.91
346 347 7.750229 AATCAAGACTTTTCATGACTGCTTA 57.250 32.000 0.00 0.00 32.42 3.09
347 348 7.934855 ATCAAGACTTTTCATGACTGCTTAT 57.065 32.000 0.00 0.00 32.42 1.73
348 349 7.369803 TCAAGACTTTTCATGACTGCTTATC 57.630 36.000 0.00 0.00 0.00 1.75
349 350 7.164122 TCAAGACTTTTCATGACTGCTTATCT 58.836 34.615 0.00 0.00 0.00 1.98
350 351 7.663081 TCAAGACTTTTCATGACTGCTTATCTT 59.337 33.333 0.00 0.00 0.00 2.40
351 352 7.992754 AGACTTTTCATGACTGCTTATCTTT 57.007 32.000 0.00 0.00 0.00 2.52
352 353 9.507329 AAGACTTTTCATGACTGCTTATCTTTA 57.493 29.630 0.00 0.00 0.00 1.85
353 354 9.678260 AGACTTTTCATGACTGCTTATCTTTAT 57.322 29.630 0.00 0.00 0.00 1.40
379 380 6.870971 ACATAACTGGTGTCGTAATTTTGT 57.129 33.333 0.00 0.00 0.00 2.83
380 381 6.664515 ACATAACTGGTGTCGTAATTTTGTG 58.335 36.000 0.00 0.00 0.00 3.33
381 382 6.483974 ACATAACTGGTGTCGTAATTTTGTGA 59.516 34.615 0.00 0.00 0.00 3.58
382 383 7.174253 ACATAACTGGTGTCGTAATTTTGTGAT 59.826 33.333 0.00 0.00 0.00 3.06
383 384 5.356882 ACTGGTGTCGTAATTTTGTGATG 57.643 39.130 0.00 0.00 0.00 3.07
384 385 4.819630 ACTGGTGTCGTAATTTTGTGATGT 59.180 37.500 0.00 0.00 0.00 3.06
385 386 5.102020 TGGTGTCGTAATTTTGTGATGTG 57.898 39.130 0.00 0.00 0.00 3.21
386 387 4.576873 TGGTGTCGTAATTTTGTGATGTGT 59.423 37.500 0.00 0.00 0.00 3.72
387 388 5.066634 TGGTGTCGTAATTTTGTGATGTGTT 59.933 36.000 0.00 0.00 0.00 3.32
388 389 5.974751 GGTGTCGTAATTTTGTGATGTGTTT 59.025 36.000 0.00 0.00 0.00 2.83
389 390 6.474102 GGTGTCGTAATTTTGTGATGTGTTTT 59.526 34.615 0.00 0.00 0.00 2.43
390 391 7.644551 GGTGTCGTAATTTTGTGATGTGTTTTA 59.355 33.333 0.00 0.00 0.00 1.52
391 392 9.176181 GTGTCGTAATTTTGTGATGTGTTTTAT 57.824 29.630 0.00 0.00 0.00 1.40
400 401 9.522804 TTTTGTGATGTGTTTTATAGTTTCACC 57.477 29.630 0.00 0.00 33.12 4.02
401 402 6.893759 TGTGATGTGTTTTATAGTTTCACCG 58.106 36.000 0.00 0.00 33.12 4.94
402 403 6.483974 TGTGATGTGTTTTATAGTTTCACCGT 59.516 34.615 0.00 0.00 33.12 4.83
403 404 7.012515 TGTGATGTGTTTTATAGTTTCACCGTT 59.987 33.333 0.00 0.00 33.12 4.44
404 405 7.322699 GTGATGTGTTTTATAGTTTCACCGTTG 59.677 37.037 0.00 0.00 0.00 4.10
405 406 6.062434 TGTGTTTTATAGTTTCACCGTTGG 57.938 37.500 0.00 0.00 0.00 3.77
406 407 5.821470 TGTGTTTTATAGTTTCACCGTTGGA 59.179 36.000 0.00 0.00 0.00 3.53
407 408 6.487331 TGTGTTTTATAGTTTCACCGTTGGAT 59.513 34.615 0.00 0.00 0.00 3.41
408 409 7.013464 TGTGTTTTATAGTTTCACCGTTGGATT 59.987 33.333 0.00 0.00 0.00 3.01
409 410 7.863877 GTGTTTTATAGTTTCACCGTTGGATTT 59.136 33.333 0.00 0.00 0.00 2.17
410 411 9.064706 TGTTTTATAGTTTCACCGTTGGATTTA 57.935 29.630 0.00 0.00 0.00 1.40
411 412 9.550811 GTTTTATAGTTTCACCGTTGGATTTAG 57.449 33.333 0.00 0.00 0.00 1.85
412 413 7.852971 TTATAGTTTCACCGTTGGATTTAGG 57.147 36.000 0.00 0.00 0.00 2.69
413 414 2.817844 AGTTTCACCGTTGGATTTAGGC 59.182 45.455 0.00 0.00 0.00 3.93
414 415 1.828979 TTCACCGTTGGATTTAGGCC 58.171 50.000 0.00 0.00 0.00 5.19
415 416 0.034863 TCACCGTTGGATTTAGGCCC 60.035 55.000 0.00 0.00 0.00 5.80
416 417 1.035385 CACCGTTGGATTTAGGCCCC 61.035 60.000 0.00 0.00 0.00 5.80
417 418 1.822186 CCGTTGGATTTAGGCCCCG 60.822 63.158 0.00 0.00 0.00 5.73
418 419 1.078001 CGTTGGATTTAGGCCCCGT 60.078 57.895 0.00 0.00 0.00 5.28
419 420 0.678684 CGTTGGATTTAGGCCCCGTT 60.679 55.000 0.00 0.00 0.00 4.44
420 421 1.100510 GTTGGATTTAGGCCCCGTTC 58.899 55.000 0.00 0.00 0.00 3.95
421 422 0.393267 TTGGATTTAGGCCCCGTTCG 60.393 55.000 0.00 0.00 0.00 3.95
422 423 1.525306 GGATTTAGGCCCCGTTCGG 60.525 63.158 0.00 4.08 0.00 4.30
433 434 1.590792 CCGTTCGGGAATACTCCGC 60.591 63.158 3.04 0.00 46.43 5.54
434 435 1.436336 CGTTCGGGAATACTCCGCT 59.564 57.895 0.00 0.00 46.43 5.52
435 436 0.594284 CGTTCGGGAATACTCCGCTC 60.594 60.000 0.00 0.00 46.43 5.03
436 437 0.249363 GTTCGGGAATACTCCGCTCC 60.249 60.000 0.00 0.00 46.43 4.70
437 438 0.685131 TTCGGGAATACTCCGCTCCA 60.685 55.000 0.00 0.00 46.43 3.86
438 439 1.067582 CGGGAATACTCCGCTCCAC 59.932 63.158 0.00 0.00 43.51 4.02
439 440 1.067582 GGGAATACTCCGCTCCACG 59.932 63.158 0.00 0.00 43.51 4.94
440 441 1.673808 GGGAATACTCCGCTCCACGT 61.674 60.000 0.00 0.00 43.51 4.49
441 442 0.175073 GGAATACTCCGCTCCACGTT 59.825 55.000 0.00 0.00 41.42 3.99
442 443 1.405121 GGAATACTCCGCTCCACGTTT 60.405 52.381 0.00 0.00 41.42 3.60
443 444 1.925185 GAATACTCCGCTCCACGTTTC 59.075 52.381 0.00 0.00 41.42 2.78
444 445 0.179145 ATACTCCGCTCCACGTTTCG 60.179 55.000 0.00 0.00 41.42 3.46
445 446 1.518056 TACTCCGCTCCACGTTTCGT 61.518 55.000 0.00 0.00 42.36 3.85
446 447 1.663702 CTCCGCTCCACGTTTCGTT 60.664 57.895 0.00 0.00 38.32 3.85
447 448 1.615107 CTCCGCTCCACGTTTCGTTC 61.615 60.000 0.00 0.00 38.32 3.95
448 449 2.664436 CCGCTCCACGTTTCGTTCC 61.664 63.158 0.00 0.00 38.32 3.62
449 450 2.851104 GCTCCACGTTTCGTTCCG 59.149 61.111 0.00 0.00 38.32 4.30
450 451 2.664436 GCTCCACGTTTCGTTCCGG 61.664 63.158 0.00 0.00 38.32 5.14
451 452 2.025418 CTCCACGTTTCGTTCCGGG 61.025 63.158 0.00 0.00 38.32 5.73
452 453 2.029369 CCACGTTTCGTTCCGGGA 59.971 61.111 0.00 0.00 38.32 5.14
453 454 2.025418 CCACGTTTCGTTCCGGGAG 61.025 63.158 0.00 0.00 38.32 4.30
454 455 2.356673 ACGTTTCGTTCCGGGAGC 60.357 61.111 0.00 0.03 36.35 4.70
455 456 3.475774 CGTTTCGTTCCGGGAGCG 61.476 66.667 24.95 24.95 37.60 5.03
456 457 3.116531 GTTTCGTTCCGGGAGCGG 61.117 66.667 28.91 13.47 36.93 5.52
457 458 3.304721 TTTCGTTCCGGGAGCGGA 61.305 61.111 28.91 20.92 36.93 5.54
458 459 3.578515 TTTCGTTCCGGGAGCGGAC 62.579 63.158 28.91 9.74 36.93 4.79
470 471 4.129737 GCGGACGGAGCTGCAGTA 62.130 66.667 16.64 0.00 39.93 2.74
471 472 2.808315 CGGACGGAGCTGCAGTAT 59.192 61.111 16.64 4.19 0.00 2.12
472 473 1.589993 CGGACGGAGCTGCAGTATG 60.590 63.158 16.64 5.73 40.87 2.39
473 474 1.816537 GGACGGAGCTGCAGTATGA 59.183 57.895 16.64 0.00 39.69 2.15
474 475 0.175760 GGACGGAGCTGCAGTATGAA 59.824 55.000 16.64 0.00 39.69 2.57
475 476 1.405526 GGACGGAGCTGCAGTATGAAA 60.406 52.381 16.64 0.00 39.69 2.69
476 477 2.555199 GACGGAGCTGCAGTATGAAAT 58.445 47.619 16.64 0.00 39.69 2.17
477 478 2.541762 GACGGAGCTGCAGTATGAAATC 59.458 50.000 16.64 1.41 39.69 2.17
478 479 2.169352 ACGGAGCTGCAGTATGAAATCT 59.831 45.455 16.64 0.14 39.69 2.40
479 480 2.543012 CGGAGCTGCAGTATGAAATCTG 59.457 50.000 16.64 4.07 39.69 2.90
480 481 2.877168 GGAGCTGCAGTATGAAATCTGG 59.123 50.000 16.64 0.00 39.69 3.86
481 482 2.877168 GAGCTGCAGTATGAAATCTGGG 59.123 50.000 16.64 0.00 39.69 4.45
482 483 2.507058 AGCTGCAGTATGAAATCTGGGA 59.493 45.455 16.64 0.00 39.69 4.37
483 484 2.877168 GCTGCAGTATGAAATCTGGGAG 59.123 50.000 16.64 0.00 39.69 4.30
484 485 2.877168 CTGCAGTATGAAATCTGGGAGC 59.123 50.000 5.25 0.00 39.69 4.70
485 486 1.869767 GCAGTATGAAATCTGGGAGCG 59.130 52.381 0.00 0.00 39.69 5.03
486 487 2.483714 GCAGTATGAAATCTGGGAGCGA 60.484 50.000 0.00 0.00 39.69 4.93
487 488 3.388308 CAGTATGAAATCTGGGAGCGAG 58.612 50.000 0.00 0.00 39.69 5.03
488 489 2.139118 GTATGAAATCTGGGAGCGAGC 58.861 52.381 0.00 0.00 0.00 5.03
489 490 0.543277 ATGAAATCTGGGAGCGAGCA 59.457 50.000 0.00 0.00 0.00 4.26
490 491 0.324614 TGAAATCTGGGAGCGAGCAA 59.675 50.000 0.00 0.00 0.00 3.91
491 492 1.271325 TGAAATCTGGGAGCGAGCAAA 60.271 47.619 0.00 0.00 0.00 3.68
492 493 1.131315 GAAATCTGGGAGCGAGCAAAC 59.869 52.381 0.00 0.00 0.00 2.93
493 494 0.326264 AATCTGGGAGCGAGCAAACT 59.674 50.000 0.00 0.00 0.00 2.66
494 495 0.392193 ATCTGGGAGCGAGCAAACTG 60.392 55.000 0.00 0.00 0.00 3.16
495 496 2.669569 TGGGAGCGAGCAAACTGC 60.670 61.111 0.00 0.00 45.46 4.40
496 497 3.435186 GGGAGCGAGCAAACTGCC 61.435 66.667 0.00 0.00 46.52 4.85
497 498 3.793144 GGAGCGAGCAAACTGCCG 61.793 66.667 0.00 0.55 46.52 5.69
503 504 2.980233 AGCAAACTGCCGCTCCAC 60.980 61.111 0.00 0.00 46.52 4.02
504 505 3.286751 GCAAACTGCCGCTCCACA 61.287 61.111 0.00 0.00 37.42 4.17
505 506 2.844451 GCAAACTGCCGCTCCACAA 61.844 57.895 0.00 0.00 37.42 3.33
506 507 1.732917 CAAACTGCCGCTCCACAAA 59.267 52.632 0.00 0.00 0.00 2.83
507 508 0.102120 CAAACTGCCGCTCCACAAAA 59.898 50.000 0.00 0.00 0.00 2.44
508 509 1.039856 AAACTGCCGCTCCACAAAAT 58.960 45.000 0.00 0.00 0.00 1.82
509 510 0.598065 AACTGCCGCTCCACAAAATC 59.402 50.000 0.00 0.00 0.00 2.17
510 511 0.250901 ACTGCCGCTCCACAAAATCT 60.251 50.000 0.00 0.00 0.00 2.40
511 512 1.003118 ACTGCCGCTCCACAAAATCTA 59.997 47.619 0.00 0.00 0.00 1.98
512 513 1.667724 CTGCCGCTCCACAAAATCTAG 59.332 52.381 0.00 0.00 0.00 2.43
513 514 1.017387 GCCGCTCCACAAAATCTAGG 58.983 55.000 0.00 0.00 0.00 3.02
514 515 1.406887 GCCGCTCCACAAAATCTAGGA 60.407 52.381 0.00 0.00 0.00 2.94
519 520 4.478206 CTCCACAAAATCTAGGAGCTGA 57.522 45.455 0.00 0.00 40.98 4.26
520 521 5.033589 CTCCACAAAATCTAGGAGCTGAT 57.966 43.478 0.00 0.00 40.98 2.90
521 522 4.774124 TCCACAAAATCTAGGAGCTGATG 58.226 43.478 0.00 0.00 0.00 3.07
522 523 4.471025 TCCACAAAATCTAGGAGCTGATGA 59.529 41.667 0.00 0.00 0.00 2.92
523 524 5.045651 TCCACAAAATCTAGGAGCTGATGAA 60.046 40.000 0.00 0.00 0.00 2.57
524 525 5.826737 CCACAAAATCTAGGAGCTGATGAAT 59.173 40.000 0.00 0.00 0.00 2.57
525 526 6.320672 CCACAAAATCTAGGAGCTGATGAATT 59.679 38.462 0.00 0.00 0.00 2.17
526 527 7.416022 CACAAAATCTAGGAGCTGATGAATTC 58.584 38.462 0.00 0.00 0.00 2.17
527 528 6.545298 ACAAAATCTAGGAGCTGATGAATTCC 59.455 38.462 2.27 0.00 0.00 3.01
528 529 4.906747 ATCTAGGAGCTGATGAATTCCC 57.093 45.455 2.27 0.00 0.00 3.97
529 530 2.630098 TCTAGGAGCTGATGAATTCCCG 59.370 50.000 2.27 0.00 0.00 5.14
530 531 1.500474 AGGAGCTGATGAATTCCCGA 58.500 50.000 2.27 0.00 0.00 5.14
531 532 1.839994 AGGAGCTGATGAATTCCCGAA 59.160 47.619 2.27 0.00 0.00 4.30
532 533 1.943340 GGAGCTGATGAATTCCCGAAC 59.057 52.381 2.27 0.00 0.00 3.95
533 534 1.594862 GAGCTGATGAATTCCCGAACG 59.405 52.381 2.27 0.00 0.00 3.95
534 535 0.657840 GCTGATGAATTCCCGAACGG 59.342 55.000 6.25 6.25 0.00 4.44
577 582 3.764237 ATATTCGGCGGTCCACTAATT 57.236 42.857 7.21 0.00 0.00 1.40
612 617 3.780294 TGGCTGGTATGAAGAGGTGTATT 59.220 43.478 0.00 0.00 0.00 1.89
627 632 1.957177 TGTATTTGCCGTTTGCTCCAA 59.043 42.857 0.00 0.00 42.00 3.53
651 656 1.495584 TTGCAAGTCGACGTTCAGCC 61.496 55.000 10.46 0.00 0.00 4.85
652 657 2.668280 GCAAGTCGACGTTCAGCCC 61.668 63.158 10.46 0.00 0.00 5.19
653 658 1.006102 CAAGTCGACGTTCAGCCCT 60.006 57.895 10.46 0.00 0.00 5.19
654 659 1.009389 CAAGTCGACGTTCAGCCCTC 61.009 60.000 10.46 0.00 0.00 4.30
655 660 2.126031 GTCGACGTTCAGCCCTCC 60.126 66.667 0.00 0.00 0.00 4.30
694 699 3.294493 TGCAAGTCAAAGCCGGCC 61.294 61.111 26.15 7.28 0.00 6.13
711 716 0.036858 GCCAGCGGAACTTTCTCTCT 60.037 55.000 0.00 0.00 0.00 3.10
733 738 2.661718 AGCCAAAAACGGAAGGAAGAA 58.338 42.857 0.00 0.00 0.00 2.52
734 739 2.623416 AGCCAAAAACGGAAGGAAGAAG 59.377 45.455 0.00 0.00 0.00 2.85
865 874 0.316607 CTCGTCCGAATCTCTCGCTG 60.317 60.000 0.00 0.00 46.71 5.18
915 924 4.503741 AATCAACATTCACCCAACGAAG 57.496 40.909 0.00 0.00 0.00 3.79
917 926 1.608590 CAACATTCACCCAACGAAGCT 59.391 47.619 0.00 0.00 0.00 3.74
918 927 1.523758 ACATTCACCCAACGAAGCTC 58.476 50.000 0.00 0.00 0.00 4.09
919 928 1.202758 ACATTCACCCAACGAAGCTCA 60.203 47.619 0.00 0.00 0.00 4.26
920 929 1.466167 CATTCACCCAACGAAGCTCAG 59.534 52.381 0.00 0.00 0.00 3.35
1053 1075 1.300233 GATCATCGTGGAGACGCCC 60.300 63.158 0.00 0.00 45.68 6.13
1149 1171 1.358152 ACGACCCCAAGGAGATGAAA 58.642 50.000 0.00 0.00 36.73 2.69
1269 1291 4.779733 ATCACCTCCTCCGGCGGT 62.780 66.667 27.32 1.27 0.00 5.68
1326 1348 2.835431 ATCACCTCCTCCGAGCCG 60.835 66.667 0.00 0.00 34.49 5.52
1505 1527 2.380410 GCAAGTACGCCGTGGTGAG 61.380 63.158 6.43 0.00 0.00 3.51
1539 1561 4.410400 GGGGAGAAGGTGGTGGCG 62.410 72.222 0.00 0.00 0.00 5.69
1732 1754 2.859032 GCAGCTACCGTGTGCTAGTATC 60.859 54.545 0.00 0.00 37.81 2.24
1743 1765 5.980116 CGTGTGCTAGTATCTCATTAGCTTT 59.020 40.000 0.00 0.00 41.72 3.51
1799 1849 3.057969 TCGAATGGTCTGCTGAATGTT 57.942 42.857 0.00 0.00 0.00 2.71
1803 1853 4.571984 CGAATGGTCTGCTGAATGTTGATA 59.428 41.667 0.00 0.00 0.00 2.15
1805 1855 6.238566 CGAATGGTCTGCTGAATGTTGATATT 60.239 38.462 0.00 0.00 0.00 1.28
1806 1856 5.823209 TGGTCTGCTGAATGTTGATATTG 57.177 39.130 0.00 0.00 0.00 1.90
1807 1857 5.499313 TGGTCTGCTGAATGTTGATATTGA 58.501 37.500 0.00 0.00 0.00 2.57
1808 1858 5.355071 TGGTCTGCTGAATGTTGATATTGAC 59.645 40.000 0.00 0.00 0.00 3.18
1809 1859 5.355071 GGTCTGCTGAATGTTGATATTGACA 59.645 40.000 0.00 0.00 0.00 3.58
1811 1861 6.910972 GTCTGCTGAATGTTGATATTGACATG 59.089 38.462 0.00 0.00 36.65 3.21
1812 1862 6.038936 TCTGCTGAATGTTGATATTGACATGG 59.961 38.462 0.00 2.75 36.65 3.66
1835 2299 0.313043 TGGACGAACTGACGAAGACC 59.687 55.000 0.00 0.00 37.03 3.85
1854 2318 8.491152 CGAAGACCTATATTTATCACTGCAAAG 58.509 37.037 0.00 0.00 0.00 2.77
1856 2320 6.425114 AGACCTATATTTATCACTGCAAAGCG 59.575 38.462 0.00 0.00 0.00 4.68
1864 2328 2.355009 CTGCAAAGCGGCAACACC 60.355 61.111 1.45 0.00 44.40 4.16
1872 2336 2.607892 GCGGCAACACCTCAGACAC 61.608 63.158 0.00 0.00 35.61 3.67
1896 2361 6.713450 ACCACAACTCGTTAACTAAATTGGAT 59.287 34.615 3.71 0.00 0.00 3.41
1982 2448 3.121030 CCGCCTCGCACAAGAAGG 61.121 66.667 0.00 0.00 0.00 3.46
2024 2490 5.946298 TGCTCAATAGACTGCTCATTTTTG 58.054 37.500 0.00 0.00 0.00 2.44
2070 2536 6.668541 TGAGAGCAAACTATATGACTTTGC 57.331 37.500 14.26 14.26 46.69 3.68
2077 2543 5.957771 AACTATATGACTTTGCTGGGAGA 57.042 39.130 0.00 0.00 0.00 3.71
2091 2557 5.269991 TGCTGGGAGAGTAAACATAGTACT 58.730 41.667 0.00 0.00 34.46 2.73
2092 2558 5.360144 TGCTGGGAGAGTAAACATAGTACTC 59.640 44.000 0.00 3.86 45.24 2.59
2093 2559 5.221283 GCTGGGAGAGTAAACATAGTACTCC 60.221 48.000 0.00 0.00 45.79 3.85
2096 2562 6.638096 GGAGAGTAAACATAGTACTCCCTC 57.362 45.833 0.00 0.00 45.79 4.30
2097 2563 6.367161 GGAGAGTAAACATAGTACTCCCTCT 58.633 44.000 0.00 0.88 45.79 3.69
2098 2564 6.263617 GGAGAGTAAACATAGTACTCCCTCTG 59.736 46.154 0.00 0.00 45.79 3.35
2099 2565 6.733509 AGAGTAAACATAGTACTCCCTCTGT 58.266 40.000 0.00 0.00 45.79 3.41
2100 2566 7.870027 AGAGTAAACATAGTACTCCCTCTGTA 58.130 38.462 0.00 0.00 45.79 2.74
2101 2567 8.334734 AGAGTAAACATAGTACTCCCTCTGTAA 58.665 37.037 0.00 0.00 45.79 2.41
2102 2568 8.890410 AGTAAACATAGTACTCCCTCTGTAAA 57.110 34.615 0.00 0.00 0.00 2.01
2103 2569 8.747471 AGTAAACATAGTACTCCCTCTGTAAAC 58.253 37.037 0.00 0.21 0.00 2.01
2104 2570 7.793948 AAACATAGTACTCCCTCTGTAAACT 57.206 36.000 0.00 0.00 0.00 2.66
2105 2571 8.890410 AAACATAGTACTCCCTCTGTAAACTA 57.110 34.615 0.00 0.00 0.00 2.24
2106 2572 8.890410 AACATAGTACTCCCTCTGTAAACTAA 57.110 34.615 0.00 0.00 0.00 2.24
2107 2573 8.890410 ACATAGTACTCCCTCTGTAAACTAAA 57.110 34.615 0.00 0.00 0.00 1.85
2108 2574 8.747471 ACATAGTACTCCCTCTGTAAACTAAAC 58.253 37.037 0.00 0.00 0.00 2.01
2109 2575 6.264841 AGTACTCCCTCTGTAAACTAAACG 57.735 41.667 0.00 0.00 0.00 3.60
2110 2576 3.922910 ACTCCCTCTGTAAACTAAACGC 58.077 45.455 0.00 0.00 0.00 4.84
2111 2577 3.577415 ACTCCCTCTGTAAACTAAACGCT 59.423 43.478 0.00 0.00 0.00 5.07
2112 2578 4.174762 CTCCCTCTGTAAACTAAACGCTC 58.825 47.826 0.00 0.00 0.00 5.03
2113 2579 3.830755 TCCCTCTGTAAACTAAACGCTCT 59.169 43.478 0.00 0.00 0.00 4.09
2114 2580 4.282703 TCCCTCTGTAAACTAAACGCTCTT 59.717 41.667 0.00 0.00 0.00 2.85
2115 2581 5.477984 TCCCTCTGTAAACTAAACGCTCTTA 59.522 40.000 0.00 0.00 0.00 2.10
2116 2582 6.154021 TCCCTCTGTAAACTAAACGCTCTTAT 59.846 38.462 0.00 0.00 0.00 1.73
2117 2583 7.340232 TCCCTCTGTAAACTAAACGCTCTTATA 59.660 37.037 0.00 0.00 0.00 0.98
2118 2584 8.142551 CCCTCTGTAAACTAAACGCTCTTATAT 58.857 37.037 0.00 0.00 0.00 0.86
2119 2585 9.530633 CCTCTGTAAACTAAACGCTCTTATATT 57.469 33.333 0.00 0.00 0.00 1.28
2132 2598 9.924650 AACGCTCTTATATTAGTTTACATAGGG 57.075 33.333 0.00 0.00 0.00 3.53
2133 2599 9.305555 ACGCTCTTATATTAGTTTACATAGGGA 57.694 33.333 0.00 0.00 0.00 4.20
2134 2600 9.790389 CGCTCTTATATTAGTTTACATAGGGAG 57.210 37.037 0.00 0.00 0.00 4.30
2169 2635 4.330074 AGGAAGCTGAAATAATCACGAACG 59.670 41.667 0.00 0.00 33.47 3.95
2246 4427 7.148423 CGTCATCTCAACATTTATCTGGTGAAA 60.148 37.037 0.00 0.00 42.08 2.69
2311 4492 3.766591 TCAAAGGCTTCAAAAGTTCCACA 59.233 39.130 0.00 0.00 0.00 4.17
2344 4525 3.536956 GGGACCTACGATCATTGAACA 57.463 47.619 0.00 0.00 0.00 3.18
2380 4561 2.288969 GACCGTTCGAGTATGCTGC 58.711 57.895 0.00 0.00 0.00 5.25
2417 4598 9.566530 CATTTCGTAATTTATGGATGTGTTTGA 57.433 29.630 0.00 0.00 0.00 2.69
2629 4812 1.522092 CCATCTGCAGGGCTACGAA 59.478 57.895 15.13 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.176219 TTGGATTACGCCCAGTACGG 59.824 55.000 0.00 0.00 34.56 4.02
1 2 1.662122 GTTTGGATTACGCCCAGTACG 59.338 52.381 0.00 0.00 34.56 3.67
2 3 2.702261 TGTTTGGATTACGCCCAGTAC 58.298 47.619 0.00 0.00 34.56 2.73
3 4 3.075884 GTTGTTTGGATTACGCCCAGTA 58.924 45.455 0.00 0.00 34.77 2.74
4 5 1.883926 GTTGTTTGGATTACGCCCAGT 59.116 47.619 0.00 0.00 34.77 4.00
5 6 1.201414 GGTTGTTTGGATTACGCCCAG 59.799 52.381 0.00 0.00 34.77 4.45
6 7 1.249407 GGTTGTTTGGATTACGCCCA 58.751 50.000 0.00 0.00 0.00 5.36
7 8 0.528924 GGGTTGTTTGGATTACGCCC 59.471 55.000 0.00 0.00 0.00 6.13
8 9 0.528924 GGGGTTGTTTGGATTACGCC 59.471 55.000 0.00 0.00 36.62 5.68
9 10 1.541379 AGGGGTTGTTTGGATTACGC 58.459 50.000 0.00 0.00 0.00 4.42
10 11 5.163591 GGATTAAGGGGTTGTTTGGATTACG 60.164 44.000 0.00 0.00 0.00 3.18
11 12 5.955959 AGGATTAAGGGGTTGTTTGGATTAC 59.044 40.000 0.00 0.00 0.00 1.89
12 13 6.160483 AGGATTAAGGGGTTGTTTGGATTA 57.840 37.500 0.00 0.00 0.00 1.75
13 14 5.023514 AGGATTAAGGGGTTGTTTGGATT 57.976 39.130 0.00 0.00 0.00 3.01
14 15 4.692523 AGGATTAAGGGGTTGTTTGGAT 57.307 40.909 0.00 0.00 0.00 3.41
15 16 4.479156 AAGGATTAAGGGGTTGTTTGGA 57.521 40.909 0.00 0.00 0.00 3.53
16 17 6.040504 GCTATAAGGATTAAGGGGTTGTTTGG 59.959 42.308 0.00 0.00 32.17 3.28
17 18 6.605594 TGCTATAAGGATTAAGGGGTTGTTTG 59.394 38.462 0.00 0.00 32.17 2.93
18 19 6.737608 TGCTATAAGGATTAAGGGGTTGTTT 58.262 36.000 0.00 0.00 32.17 2.83
19 20 6.335781 TGCTATAAGGATTAAGGGGTTGTT 57.664 37.500 0.00 0.00 32.17 2.83
20 21 5.690364 GCTGCTATAAGGATTAAGGGGTTGT 60.690 44.000 0.00 0.00 32.17 3.32
21 22 4.762251 GCTGCTATAAGGATTAAGGGGTTG 59.238 45.833 0.00 0.00 32.17 3.77
22 23 4.202577 GGCTGCTATAAGGATTAAGGGGTT 60.203 45.833 0.00 0.00 32.17 4.11
23 24 3.330998 GGCTGCTATAAGGATTAAGGGGT 59.669 47.826 0.00 0.00 32.17 4.95
24 25 3.589288 AGGCTGCTATAAGGATTAAGGGG 59.411 47.826 0.00 0.00 32.17 4.79
25 26 4.323868 GGAGGCTGCTATAAGGATTAAGGG 60.324 50.000 0.00 0.00 32.17 3.95
26 27 4.287067 TGGAGGCTGCTATAAGGATTAAGG 59.713 45.833 7.74 0.00 32.17 2.69
27 28 5.241662 GTGGAGGCTGCTATAAGGATTAAG 58.758 45.833 7.74 0.00 32.17 1.85
28 29 4.041691 GGTGGAGGCTGCTATAAGGATTAA 59.958 45.833 7.74 0.00 32.17 1.40
29 30 3.583086 GGTGGAGGCTGCTATAAGGATTA 59.417 47.826 7.74 0.00 33.48 1.75
30 31 2.373502 GGTGGAGGCTGCTATAAGGATT 59.626 50.000 7.74 0.00 0.00 3.01
31 32 1.981495 GGTGGAGGCTGCTATAAGGAT 59.019 52.381 7.74 0.00 0.00 3.24
32 33 1.424638 GGTGGAGGCTGCTATAAGGA 58.575 55.000 7.74 0.00 0.00 3.36
33 34 0.398318 GGGTGGAGGCTGCTATAAGG 59.602 60.000 7.74 0.00 0.00 2.69
34 35 1.428869 AGGGTGGAGGCTGCTATAAG 58.571 55.000 7.74 0.00 0.00 1.73
35 36 1.490490 CAAGGGTGGAGGCTGCTATAA 59.510 52.381 7.74 0.00 0.00 0.98
36 37 1.131638 CAAGGGTGGAGGCTGCTATA 58.868 55.000 7.74 0.00 0.00 1.31
37 38 1.918253 CAAGGGTGGAGGCTGCTAT 59.082 57.895 7.74 0.00 0.00 2.97
38 39 2.971598 GCAAGGGTGGAGGCTGCTA 61.972 63.158 7.74 0.00 0.00 3.49
39 40 4.357279 GCAAGGGTGGAGGCTGCT 62.357 66.667 7.74 0.00 0.00 4.24
40 41 3.875510 AAGCAAGGGTGGAGGCTGC 62.876 63.158 0.00 0.00 36.58 5.25
41 42 1.676967 GAAGCAAGGGTGGAGGCTG 60.677 63.158 0.00 0.00 36.58 4.85
42 43 2.759795 GAAGCAAGGGTGGAGGCT 59.240 61.111 0.00 0.00 38.45 4.58
43 44 2.180159 TACGAAGCAAGGGTGGAGGC 62.180 60.000 0.00 0.00 0.00 4.70
44 45 0.323629 TTACGAAGCAAGGGTGGAGG 59.676 55.000 0.00 0.00 0.00 4.30
45 46 1.726853 CTTACGAAGCAAGGGTGGAG 58.273 55.000 0.00 0.00 0.00 3.86
46 47 3.927555 CTTACGAAGCAAGGGTGGA 57.072 52.632 0.00 0.00 0.00 4.02
77 78 7.604545 GCTTTCAGAGACCTCTAATTGTTTAGT 59.395 37.037 0.00 0.00 37.98 2.24
78 79 7.065204 GGCTTTCAGAGACCTCTAATTGTTTAG 59.935 40.741 0.00 0.00 37.98 1.85
79 80 6.879458 GGCTTTCAGAGACCTCTAATTGTTTA 59.121 38.462 0.00 0.00 37.98 2.01
80 81 5.707764 GGCTTTCAGAGACCTCTAATTGTTT 59.292 40.000 0.00 0.00 37.98 2.83
81 82 5.249420 GGCTTTCAGAGACCTCTAATTGTT 58.751 41.667 0.00 0.00 37.98 2.83
82 83 4.837972 GGCTTTCAGAGACCTCTAATTGT 58.162 43.478 0.00 0.00 37.98 2.71
92 93 0.322816 TGGCATGGGCTTTCAGAGAC 60.323 55.000 0.00 0.00 40.87 3.36
93 94 0.322816 GTGGCATGGGCTTTCAGAGA 60.323 55.000 0.00 0.00 40.87 3.10
94 95 1.318158 GGTGGCATGGGCTTTCAGAG 61.318 60.000 0.00 0.00 40.87 3.35
95 96 1.304381 GGTGGCATGGGCTTTCAGA 60.304 57.895 0.00 0.00 40.87 3.27
96 97 1.601419 CTGGTGGCATGGGCTTTCAG 61.601 60.000 0.00 0.00 40.87 3.02
97 98 1.607178 CTGGTGGCATGGGCTTTCA 60.607 57.895 0.00 0.00 40.87 2.69
98 99 3.010413 GCTGGTGGCATGGGCTTTC 62.010 63.158 0.00 0.00 41.35 2.62
99 100 2.999063 GCTGGTGGCATGGGCTTT 60.999 61.111 0.00 0.00 41.35 3.51
108 109 3.357079 CCGAAGTGTGCTGGTGGC 61.357 66.667 0.00 0.00 42.22 5.01
109 110 2.107041 TACCCGAAGTGTGCTGGTGG 62.107 60.000 0.00 0.00 0.00 4.61
110 111 0.949105 GTACCCGAAGTGTGCTGGTG 60.949 60.000 0.00 0.00 0.00 4.17
111 112 1.370064 GTACCCGAAGTGTGCTGGT 59.630 57.895 0.00 0.00 0.00 4.00
112 113 1.375523 GGTACCCGAAGTGTGCTGG 60.376 63.158 0.00 0.00 0.00 4.85
113 114 0.949105 GTGGTACCCGAAGTGTGCTG 60.949 60.000 10.07 0.00 0.00 4.41
114 115 1.119574 AGTGGTACCCGAAGTGTGCT 61.120 55.000 10.07 0.00 0.00 4.40
115 116 0.604578 TAGTGGTACCCGAAGTGTGC 59.395 55.000 10.07 0.00 0.00 4.57
116 117 2.232941 ACATAGTGGTACCCGAAGTGTG 59.767 50.000 10.07 5.16 0.00 3.82
117 118 2.494870 GACATAGTGGTACCCGAAGTGT 59.505 50.000 10.07 8.02 0.00 3.55
118 119 2.758979 AGACATAGTGGTACCCGAAGTG 59.241 50.000 10.07 4.74 0.00 3.16
119 120 3.097342 AGACATAGTGGTACCCGAAGT 57.903 47.619 10.07 1.41 0.00 3.01
120 121 3.004524 GCTAGACATAGTGGTACCCGAAG 59.995 52.174 10.07 0.00 0.00 3.79
121 122 2.954318 GCTAGACATAGTGGTACCCGAA 59.046 50.000 10.07 0.00 0.00 4.30
122 123 2.579873 GCTAGACATAGTGGTACCCGA 58.420 52.381 10.07 0.00 0.00 5.14
123 124 1.612463 GGCTAGACATAGTGGTACCCG 59.388 57.143 10.07 0.00 0.00 5.28
124 125 2.364647 GTGGCTAGACATAGTGGTACCC 59.635 54.545 10.07 0.32 0.00 3.69
125 126 3.297736 AGTGGCTAGACATAGTGGTACC 58.702 50.000 0.00 4.43 0.00 3.34
126 127 5.109903 CAAAGTGGCTAGACATAGTGGTAC 58.890 45.833 0.00 0.00 0.00 3.34
127 128 4.775780 ACAAAGTGGCTAGACATAGTGGTA 59.224 41.667 0.00 0.00 0.00 3.25
128 129 3.583086 ACAAAGTGGCTAGACATAGTGGT 59.417 43.478 0.00 0.00 0.00 4.16
129 130 4.081420 AGACAAAGTGGCTAGACATAGTGG 60.081 45.833 0.00 0.00 30.85 4.00
130 131 5.078411 AGACAAAGTGGCTAGACATAGTG 57.922 43.478 0.00 2.44 30.85 2.74
131 132 6.852420 TTAGACAAAGTGGCTAGACATAGT 57.148 37.500 0.00 0.00 39.51 2.12
132 133 6.201806 GCATTAGACAAAGTGGCTAGACATAG 59.798 42.308 0.00 0.00 39.51 2.23
133 134 6.049149 GCATTAGACAAAGTGGCTAGACATA 58.951 40.000 0.00 0.00 39.51 2.29
134 135 4.878397 GCATTAGACAAAGTGGCTAGACAT 59.122 41.667 0.00 0.00 39.51 3.06
135 136 4.253685 GCATTAGACAAAGTGGCTAGACA 58.746 43.478 0.00 0.00 39.51 3.41
136 137 4.093556 GTGCATTAGACAAAGTGGCTAGAC 59.906 45.833 0.00 0.00 39.51 2.59
137 138 4.253685 GTGCATTAGACAAAGTGGCTAGA 58.746 43.478 0.00 0.00 39.51 2.43
138 139 3.375299 GGTGCATTAGACAAAGTGGCTAG 59.625 47.826 0.00 0.00 39.51 3.42
139 140 3.009033 AGGTGCATTAGACAAAGTGGCTA 59.991 43.478 0.00 0.00 36.80 3.93
140 141 2.162681 GGTGCATTAGACAAAGTGGCT 58.837 47.619 0.00 0.00 40.22 4.75
141 142 2.162681 AGGTGCATTAGACAAAGTGGC 58.837 47.619 0.00 0.00 0.00 5.01
142 143 3.191371 GGAAGGTGCATTAGACAAAGTGG 59.809 47.826 0.00 0.00 0.00 4.00
143 144 3.120199 CGGAAGGTGCATTAGACAAAGTG 60.120 47.826 0.00 0.00 0.00 3.16
144 145 3.074412 CGGAAGGTGCATTAGACAAAGT 58.926 45.455 0.00 0.00 0.00 2.66
145 146 2.159517 GCGGAAGGTGCATTAGACAAAG 60.160 50.000 0.00 0.00 0.00 2.77
146 147 1.810151 GCGGAAGGTGCATTAGACAAA 59.190 47.619 0.00 0.00 0.00 2.83
147 148 1.003118 AGCGGAAGGTGCATTAGACAA 59.997 47.619 0.00 0.00 42.35 3.18
148 149 0.613260 AGCGGAAGGTGCATTAGACA 59.387 50.000 0.00 0.00 42.35 3.41
149 150 1.398390 CAAGCGGAAGGTGCATTAGAC 59.602 52.381 0.00 0.00 43.76 2.59
150 151 1.003118 ACAAGCGGAAGGTGCATTAGA 59.997 47.619 0.00 0.00 43.76 2.10
151 152 1.131126 CACAAGCGGAAGGTGCATTAG 59.869 52.381 0.00 0.00 43.76 1.73
152 153 1.164411 CACAAGCGGAAGGTGCATTA 58.836 50.000 0.00 0.00 43.76 1.90
153 154 1.959085 CACAAGCGGAAGGTGCATT 59.041 52.632 0.00 0.00 43.76 3.56
154 155 3.672293 CACAAGCGGAAGGTGCAT 58.328 55.556 0.00 0.00 43.76 3.96
157 158 3.365265 GGGCACAAGCGGAAGGTG 61.365 66.667 0.00 0.00 43.76 4.00
160 161 3.423154 GACGGGCACAAGCGGAAG 61.423 66.667 0.00 0.00 43.41 3.46
161 162 3.469863 AAGACGGGCACAAGCGGAA 62.470 57.895 0.00 0.00 43.41 4.30
162 163 3.876589 GAAGACGGGCACAAGCGGA 62.877 63.158 0.00 0.00 43.41 5.54
163 164 3.423154 GAAGACGGGCACAAGCGG 61.423 66.667 0.00 0.00 43.41 5.52
164 165 2.357517 AGAAGACGGGCACAAGCG 60.358 61.111 0.00 0.00 43.41 4.68
165 166 2.035442 GGAGAAGACGGGCACAAGC 61.035 63.158 0.00 0.00 41.10 4.01
166 167 1.376037 GGGAGAAGACGGGCACAAG 60.376 63.158 0.00 0.00 0.00 3.16
167 168 2.747686 GGGAGAAGACGGGCACAA 59.252 61.111 0.00 0.00 0.00 3.33
168 169 3.319198 GGGGAGAAGACGGGCACA 61.319 66.667 0.00 0.00 0.00 4.57
169 170 3.319198 TGGGGAGAAGACGGGCAC 61.319 66.667 0.00 0.00 0.00 5.01
170 171 3.319198 GTGGGGAGAAGACGGGCA 61.319 66.667 0.00 0.00 0.00 5.36
171 172 4.097361 GGTGGGGAGAAGACGGGC 62.097 72.222 0.00 0.00 0.00 6.13
172 173 1.774894 TTTGGTGGGGAGAAGACGGG 61.775 60.000 0.00 0.00 0.00 5.28
173 174 0.109723 TTTTGGTGGGGAGAAGACGG 59.890 55.000 0.00 0.00 0.00 4.79
174 175 1.235724 GTTTTGGTGGGGAGAAGACG 58.764 55.000 0.00 0.00 0.00 4.18
175 176 1.617322 GGTTTTGGTGGGGAGAAGAC 58.383 55.000 0.00 0.00 0.00 3.01
176 177 0.109723 CGGTTTTGGTGGGGAGAAGA 59.890 55.000 0.00 0.00 0.00 2.87
177 178 0.179001 ACGGTTTTGGTGGGGAGAAG 60.179 55.000 0.00 0.00 0.00 2.85
178 179 0.466555 CACGGTTTTGGTGGGGAGAA 60.467 55.000 0.00 0.00 0.00 2.87
179 180 1.149627 CACGGTTTTGGTGGGGAGA 59.850 57.895 0.00 0.00 0.00 3.71
180 181 2.561037 GCACGGTTTTGGTGGGGAG 61.561 63.158 0.00 0.00 35.94 4.30
181 182 2.519780 GCACGGTTTTGGTGGGGA 60.520 61.111 0.00 0.00 35.94 4.81
182 183 3.611674 GGCACGGTTTTGGTGGGG 61.612 66.667 0.00 0.00 35.94 4.96
183 184 2.835431 TGGCACGGTTTTGGTGGG 60.835 61.111 0.00 0.00 35.94 4.61
184 185 1.949847 TTGTGGCACGGTTTTGGTGG 61.950 55.000 13.77 0.00 35.94 4.61
185 186 0.804156 GTTGTGGCACGGTTTTGGTG 60.804 55.000 13.77 0.00 38.42 4.17
186 187 1.513622 GTTGTGGCACGGTTTTGGT 59.486 52.632 13.77 0.00 0.00 3.67
187 188 1.587613 CGTTGTGGCACGGTTTTGG 60.588 57.895 13.77 0.00 36.47 3.28
188 189 0.456995 AACGTTGTGGCACGGTTTTG 60.457 50.000 13.77 2.04 44.82 2.44
189 190 0.179158 GAACGTTGTGGCACGGTTTT 60.179 50.000 18.32 8.15 41.20 2.43
190 191 1.430228 GAACGTTGTGGCACGGTTT 59.570 52.632 18.32 7.84 41.20 3.27
191 192 2.815298 CGAACGTTGTGGCACGGTT 61.815 57.895 17.62 17.62 41.20 4.44
192 193 3.266376 CGAACGTTGTGGCACGGT 61.266 61.111 13.77 8.03 44.76 4.83
193 194 4.659874 GCGAACGTTGTGGCACGG 62.660 66.667 13.77 7.36 44.82 4.94
194 195 2.709629 ATTGCGAACGTTGTGGCACG 62.710 55.000 13.77 2.48 46.04 5.34
195 196 0.996727 GATTGCGAACGTTGTGGCAC 60.997 55.000 11.55 11.55 34.72 5.01
196 197 1.163420 AGATTGCGAACGTTGTGGCA 61.163 50.000 5.00 9.97 0.00 4.92
197 198 0.452784 GAGATTGCGAACGTTGTGGC 60.453 55.000 5.00 7.10 0.00 5.01
198 199 1.148310 AGAGATTGCGAACGTTGTGG 58.852 50.000 5.00 0.00 0.00 4.17
199 200 2.563976 CAAGAGATTGCGAACGTTGTG 58.436 47.619 5.00 0.00 0.00 3.33
200 201 1.531149 CCAAGAGATTGCGAACGTTGT 59.469 47.619 5.00 0.00 0.00 3.32
201 202 1.531149 ACCAAGAGATTGCGAACGTTG 59.469 47.619 5.00 0.00 0.00 4.10
202 203 1.531149 CACCAAGAGATTGCGAACGTT 59.469 47.619 0.00 0.00 0.00 3.99
203 204 1.148310 CACCAAGAGATTGCGAACGT 58.852 50.000 0.00 0.00 0.00 3.99
204 205 0.179215 GCACCAAGAGATTGCGAACG 60.179 55.000 0.00 0.00 0.00 3.95
205 206 0.874390 TGCACCAAGAGATTGCGAAC 59.126 50.000 0.00 0.00 39.22 3.95
206 207 0.874390 GTGCACCAAGAGATTGCGAA 59.126 50.000 5.22 0.00 39.22 4.70
207 208 0.035317 AGTGCACCAAGAGATTGCGA 59.965 50.000 14.63 0.00 39.22 5.10
208 209 0.877071 AAGTGCACCAAGAGATTGCG 59.123 50.000 14.63 0.00 39.22 4.85
209 210 1.200948 GGAAGTGCACCAAGAGATTGC 59.799 52.381 14.63 0.40 36.76 3.56
210 211 2.507484 TGGAAGTGCACCAAGAGATTG 58.493 47.619 14.63 0.00 34.25 2.67
211 212 2.957402 TGGAAGTGCACCAAGAGATT 57.043 45.000 14.63 0.00 34.25 2.40
212 213 4.785346 ATATGGAAGTGCACCAAGAGAT 57.215 40.909 14.63 1.13 40.93 2.75
213 214 4.574674 AATATGGAAGTGCACCAAGAGA 57.425 40.909 14.63 0.00 40.93 3.10
214 215 5.647658 TGTTAATATGGAAGTGCACCAAGAG 59.352 40.000 14.63 0.00 40.93 2.85
215 216 5.565509 TGTTAATATGGAAGTGCACCAAGA 58.434 37.500 14.63 0.00 40.93 3.02
216 217 5.895636 TGTTAATATGGAAGTGCACCAAG 57.104 39.130 14.63 0.00 40.93 3.61
217 218 5.772672 AGTTGTTAATATGGAAGTGCACCAA 59.227 36.000 14.63 2.87 40.93 3.67
218 219 5.321102 AGTTGTTAATATGGAAGTGCACCA 58.679 37.500 14.63 4.86 41.83 4.17
219 220 5.897377 AGTTGTTAATATGGAAGTGCACC 57.103 39.130 14.63 0.00 0.00 5.01
220 221 7.328493 GGAAAAGTTGTTAATATGGAAGTGCAC 59.672 37.037 9.40 9.40 0.00 4.57
221 222 7.232534 AGGAAAAGTTGTTAATATGGAAGTGCA 59.767 33.333 0.00 0.00 0.00 4.57
222 223 7.602753 AGGAAAAGTTGTTAATATGGAAGTGC 58.397 34.615 0.00 0.00 0.00 4.40
223 224 9.981114 AAAGGAAAAGTTGTTAATATGGAAGTG 57.019 29.630 0.00 0.00 0.00 3.16
248 249 9.921637 AAGTTGTCAATGTCTCTGTTTTAAAAA 57.078 25.926 1.31 0.00 0.00 1.94
249 250 9.352784 CAAGTTGTCAATGTCTCTGTTTTAAAA 57.647 29.630 0.00 0.00 0.00 1.52
250 251 8.735315 TCAAGTTGTCAATGTCTCTGTTTTAAA 58.265 29.630 2.11 0.00 0.00 1.52
251 252 8.275015 TCAAGTTGTCAATGTCTCTGTTTTAA 57.725 30.769 2.11 0.00 0.00 1.52
252 253 7.857734 TCAAGTTGTCAATGTCTCTGTTTTA 57.142 32.000 2.11 0.00 0.00 1.52
253 254 6.757897 TCAAGTTGTCAATGTCTCTGTTTT 57.242 33.333 2.11 0.00 0.00 2.43
254 255 6.757897 TTCAAGTTGTCAATGTCTCTGTTT 57.242 33.333 2.11 0.00 0.00 2.83
255 256 6.150976 TGTTTCAAGTTGTCAATGTCTCTGTT 59.849 34.615 2.11 0.00 0.00 3.16
256 257 5.647658 TGTTTCAAGTTGTCAATGTCTCTGT 59.352 36.000 2.11 0.00 0.00 3.41
257 258 6.122850 TGTTTCAAGTTGTCAATGTCTCTG 57.877 37.500 2.11 0.00 0.00 3.35
258 259 6.375455 AGTTGTTTCAAGTTGTCAATGTCTCT 59.625 34.615 2.11 0.00 0.00 3.10
259 260 6.555315 AGTTGTTTCAAGTTGTCAATGTCTC 58.445 36.000 2.11 0.00 0.00 3.36
260 261 6.150976 TGAGTTGTTTCAAGTTGTCAATGTCT 59.849 34.615 2.11 2.32 0.00 3.41
261 262 6.321717 TGAGTTGTTTCAAGTTGTCAATGTC 58.678 36.000 2.11 8.73 0.00 3.06
262 263 6.266168 TGAGTTGTTTCAAGTTGTCAATGT 57.734 33.333 2.11 0.80 0.00 2.71
263 264 8.344831 TCTATGAGTTGTTTCAAGTTGTCAATG 58.655 33.333 2.11 0.00 0.00 2.82
264 265 8.450578 TCTATGAGTTGTTTCAAGTTGTCAAT 57.549 30.769 2.11 0.00 0.00 2.57
265 266 7.857734 TCTATGAGTTGTTTCAAGTTGTCAA 57.142 32.000 2.11 5.03 0.00 3.18
266 267 7.857734 TTCTATGAGTTGTTTCAAGTTGTCA 57.142 32.000 2.11 0.00 0.00 3.58
269 270 9.334693 GCTTATTCTATGAGTTGTTTCAAGTTG 57.665 33.333 0.00 0.00 0.00 3.16
270 271 9.289782 AGCTTATTCTATGAGTTGTTTCAAGTT 57.710 29.630 0.00 0.00 0.00 2.66
271 272 8.725148 CAGCTTATTCTATGAGTTGTTTCAAGT 58.275 33.333 0.00 0.00 0.00 3.16
272 273 8.939929 TCAGCTTATTCTATGAGTTGTTTCAAG 58.060 33.333 0.00 0.00 30.84 3.02
273 274 8.846943 TCAGCTTATTCTATGAGTTGTTTCAA 57.153 30.769 0.00 0.00 30.84 2.69
274 275 8.314021 TCTCAGCTTATTCTATGAGTTGTTTCA 58.686 33.333 0.00 0.00 40.07 2.69
275 276 8.709386 TCTCAGCTTATTCTATGAGTTGTTTC 57.291 34.615 0.00 0.00 40.07 2.78
277 278 9.979578 CTATCTCAGCTTATTCTATGAGTTGTT 57.020 33.333 0.00 0.00 40.07 2.83
317 318 9.248291 GCAGTCATGAAAAGTCTTGATTAAAAA 57.752 29.630 0.00 0.00 39.40 1.94
318 319 8.632679 AGCAGTCATGAAAAGTCTTGATTAAAA 58.367 29.630 0.00 0.00 39.40 1.52
319 320 8.169977 AGCAGTCATGAAAAGTCTTGATTAAA 57.830 30.769 0.00 0.00 39.40 1.52
320 321 7.750229 AGCAGTCATGAAAAGTCTTGATTAA 57.250 32.000 0.00 0.00 39.40 1.40
321 322 7.750229 AAGCAGTCATGAAAAGTCTTGATTA 57.250 32.000 0.00 0.00 39.40 1.75
322 323 6.645790 AAGCAGTCATGAAAAGTCTTGATT 57.354 33.333 0.00 0.00 39.40 2.57
323 324 7.828223 AGATAAGCAGTCATGAAAAGTCTTGAT 59.172 33.333 0.00 0.00 39.40 2.57
324 325 7.164122 AGATAAGCAGTCATGAAAAGTCTTGA 58.836 34.615 0.00 0.00 36.01 3.02
325 326 7.375106 AGATAAGCAGTCATGAAAAGTCTTG 57.625 36.000 0.00 0.00 0.00 3.02
326 327 7.992754 AAGATAAGCAGTCATGAAAAGTCTT 57.007 32.000 0.00 0.00 0.00 3.01
327 328 7.992754 AAAGATAAGCAGTCATGAAAAGTCT 57.007 32.000 0.00 0.00 0.00 3.24
353 354 9.656040 ACAAAATTACGACACCAGTTATGTATA 57.344 29.630 0.00 0.00 0.00 1.47
354 355 8.447833 CACAAAATTACGACACCAGTTATGTAT 58.552 33.333 0.00 0.00 0.00 2.29
355 356 7.656542 TCACAAAATTACGACACCAGTTATGTA 59.343 33.333 0.00 0.00 0.00 2.29
356 357 6.483974 TCACAAAATTACGACACCAGTTATGT 59.516 34.615 0.00 0.00 0.00 2.29
357 358 6.893759 TCACAAAATTACGACACCAGTTATG 58.106 36.000 0.00 0.00 0.00 1.90
358 359 7.174253 ACATCACAAAATTACGACACCAGTTAT 59.826 33.333 0.00 0.00 0.00 1.89
359 360 6.483974 ACATCACAAAATTACGACACCAGTTA 59.516 34.615 0.00 0.00 0.00 2.24
360 361 5.298276 ACATCACAAAATTACGACACCAGTT 59.702 36.000 0.00 0.00 0.00 3.16
361 362 4.819630 ACATCACAAAATTACGACACCAGT 59.180 37.500 0.00 0.00 0.00 4.00
362 363 5.146460 CACATCACAAAATTACGACACCAG 58.854 41.667 0.00 0.00 0.00 4.00
363 364 4.576873 ACACATCACAAAATTACGACACCA 59.423 37.500 0.00 0.00 0.00 4.17
364 365 5.103290 ACACATCACAAAATTACGACACC 57.897 39.130 0.00 0.00 0.00 4.16
365 366 7.444558 AAAACACATCACAAAATTACGACAC 57.555 32.000 0.00 0.00 0.00 3.67
374 375 9.522804 GGTGAAACTATAAAACACATCACAAAA 57.477 29.630 0.00 0.00 38.09 2.44
375 376 7.858382 CGGTGAAACTATAAAACACATCACAAA 59.142 33.333 0.00 0.00 38.09 2.83
376 377 7.012515 ACGGTGAAACTATAAAACACATCACAA 59.987 33.333 0.00 0.00 38.09 3.33
377 378 6.483974 ACGGTGAAACTATAAAACACATCACA 59.516 34.615 0.00 0.00 38.09 3.58
378 379 6.894828 ACGGTGAAACTATAAAACACATCAC 58.105 36.000 0.00 0.00 36.74 3.06
379 380 7.356540 CAACGGTGAAACTATAAAACACATCA 58.643 34.615 0.00 0.00 36.74 3.07
380 381 6.799925 CCAACGGTGAAACTATAAAACACATC 59.200 38.462 0.00 0.00 36.74 3.06
381 382 6.487331 TCCAACGGTGAAACTATAAAACACAT 59.513 34.615 0.00 0.00 36.74 3.21
382 383 5.821470 TCCAACGGTGAAACTATAAAACACA 59.179 36.000 0.00 0.00 36.74 3.72
383 384 6.303021 TCCAACGGTGAAACTATAAAACAC 57.697 37.500 0.00 0.00 36.74 3.32
384 385 7.513371 AATCCAACGGTGAAACTATAAAACA 57.487 32.000 0.00 0.00 36.74 2.83
385 386 9.550811 CTAAATCCAACGGTGAAACTATAAAAC 57.449 33.333 0.00 0.00 36.74 2.43
386 387 8.732531 CCTAAATCCAACGGTGAAACTATAAAA 58.267 33.333 0.00 0.00 36.74 1.52
387 388 7.148205 GCCTAAATCCAACGGTGAAACTATAAA 60.148 37.037 0.00 0.00 36.74 1.40
388 389 6.316890 GCCTAAATCCAACGGTGAAACTATAA 59.683 38.462 0.00 0.00 36.74 0.98
389 390 5.818857 GCCTAAATCCAACGGTGAAACTATA 59.181 40.000 0.00 0.00 36.74 1.31
390 391 4.638865 GCCTAAATCCAACGGTGAAACTAT 59.361 41.667 0.00 0.00 36.74 2.12
391 392 4.004982 GCCTAAATCCAACGGTGAAACTA 58.995 43.478 0.00 0.00 36.74 2.24
392 393 2.817844 GCCTAAATCCAACGGTGAAACT 59.182 45.455 0.00 0.00 36.74 2.66
393 394 2.094906 GGCCTAAATCCAACGGTGAAAC 60.095 50.000 0.00 0.00 0.00 2.78
394 395 2.164338 GGCCTAAATCCAACGGTGAAA 58.836 47.619 0.00 0.00 0.00 2.69
395 396 1.614850 GGGCCTAAATCCAACGGTGAA 60.615 52.381 0.00 0.00 0.00 3.18
396 397 0.034863 GGGCCTAAATCCAACGGTGA 60.035 55.000 0.00 0.00 0.00 4.02
397 398 1.035385 GGGGCCTAAATCCAACGGTG 61.035 60.000 0.84 0.00 0.00 4.94
398 399 1.305287 GGGGCCTAAATCCAACGGT 59.695 57.895 0.84 0.00 0.00 4.83
399 400 1.822186 CGGGGCCTAAATCCAACGG 60.822 63.158 0.84 0.00 0.00 4.44
400 401 0.678684 AACGGGGCCTAAATCCAACG 60.679 55.000 0.84 0.00 0.00 4.10
401 402 1.100510 GAACGGGGCCTAAATCCAAC 58.899 55.000 0.84 0.00 0.00 3.77
402 403 0.393267 CGAACGGGGCCTAAATCCAA 60.393 55.000 0.84 0.00 0.00 3.53
403 404 1.222387 CGAACGGGGCCTAAATCCA 59.778 57.895 0.84 0.00 0.00 3.41
404 405 1.525306 CCGAACGGGGCCTAAATCC 60.525 63.158 0.84 0.00 0.00 3.01
405 406 4.136250 CCGAACGGGGCCTAAATC 57.864 61.111 0.84 0.00 0.00 2.17
421 422 1.067582 CGTGGAGCGGAGTATTCCC 59.932 63.158 0.00 0.00 40.67 3.97
422 423 0.175073 AACGTGGAGCGGAGTATTCC 59.825 55.000 0.00 0.00 46.52 3.01
423 424 1.925185 GAAACGTGGAGCGGAGTATTC 59.075 52.381 0.00 0.00 46.52 1.75
424 425 1.734707 CGAAACGTGGAGCGGAGTATT 60.735 52.381 0.00 0.00 46.52 1.89
425 426 0.179145 CGAAACGTGGAGCGGAGTAT 60.179 55.000 0.00 0.00 46.52 2.12
426 427 1.210931 CGAAACGTGGAGCGGAGTA 59.789 57.895 0.00 0.00 46.52 2.59
427 428 2.049433 CGAAACGTGGAGCGGAGT 60.049 61.111 0.00 0.00 46.52 3.85
428 429 1.615107 GAACGAAACGTGGAGCGGAG 61.615 60.000 0.00 0.00 46.52 4.63
429 430 1.662446 GAACGAAACGTGGAGCGGA 60.662 57.895 0.00 0.00 46.52 5.54
430 431 2.664436 GGAACGAAACGTGGAGCGG 61.664 63.158 0.00 0.00 46.52 5.52
431 432 2.851104 GGAACGAAACGTGGAGCG 59.149 61.111 0.00 0.00 39.99 5.03
453 454 3.432051 ATACTGCAGCTCCGTCCGC 62.432 63.158 15.27 0.00 0.00 5.54
454 455 1.589993 CATACTGCAGCTCCGTCCG 60.590 63.158 15.27 0.00 0.00 4.79
455 456 0.175760 TTCATACTGCAGCTCCGTCC 59.824 55.000 15.27 0.00 0.00 4.79
456 457 2.010145 TTTCATACTGCAGCTCCGTC 57.990 50.000 15.27 0.00 0.00 4.79
457 458 2.169352 AGATTTCATACTGCAGCTCCGT 59.831 45.455 15.27 0.00 0.00 4.69
458 459 2.543012 CAGATTTCATACTGCAGCTCCG 59.457 50.000 15.27 0.00 0.00 4.63
459 460 2.877168 CCAGATTTCATACTGCAGCTCC 59.123 50.000 15.27 0.00 33.40 4.70
460 461 2.877168 CCCAGATTTCATACTGCAGCTC 59.123 50.000 15.27 0.00 33.40 4.09
461 462 2.507058 TCCCAGATTTCATACTGCAGCT 59.493 45.455 15.27 3.67 33.40 4.24
462 463 2.877168 CTCCCAGATTTCATACTGCAGC 59.123 50.000 15.27 0.00 33.40 5.25
463 464 2.877168 GCTCCCAGATTTCATACTGCAG 59.123 50.000 13.48 13.48 33.40 4.41
464 465 2.742856 CGCTCCCAGATTTCATACTGCA 60.743 50.000 0.00 0.00 33.40 4.41
465 466 1.869767 CGCTCCCAGATTTCATACTGC 59.130 52.381 0.00 0.00 33.40 4.40
466 467 3.388308 CTCGCTCCCAGATTTCATACTG 58.612 50.000 0.00 0.00 0.00 2.74
467 468 2.224161 GCTCGCTCCCAGATTTCATACT 60.224 50.000 0.00 0.00 0.00 2.12
468 469 2.139118 GCTCGCTCCCAGATTTCATAC 58.861 52.381 0.00 0.00 0.00 2.39
469 470 1.762370 TGCTCGCTCCCAGATTTCATA 59.238 47.619 0.00 0.00 0.00 2.15
470 471 0.543277 TGCTCGCTCCCAGATTTCAT 59.457 50.000 0.00 0.00 0.00 2.57
471 472 0.324614 TTGCTCGCTCCCAGATTTCA 59.675 50.000 0.00 0.00 0.00 2.69
472 473 1.131315 GTTTGCTCGCTCCCAGATTTC 59.869 52.381 0.00 0.00 0.00 2.17
473 474 1.168714 GTTTGCTCGCTCCCAGATTT 58.831 50.000 0.00 0.00 0.00 2.17
474 475 0.326264 AGTTTGCTCGCTCCCAGATT 59.674 50.000 0.00 0.00 0.00 2.40
475 476 0.392193 CAGTTTGCTCGCTCCCAGAT 60.392 55.000 0.00 0.00 0.00 2.90
476 477 1.004560 CAGTTTGCTCGCTCCCAGA 60.005 57.895 0.00 0.00 0.00 3.86
477 478 2.684843 GCAGTTTGCTCGCTCCCAG 61.685 63.158 0.00 0.00 40.96 4.45
478 479 2.669569 GCAGTTTGCTCGCTCCCA 60.670 61.111 0.00 0.00 40.96 4.37
479 480 3.435186 GGCAGTTTGCTCGCTCCC 61.435 66.667 0.67 0.00 44.28 4.30
480 481 3.793144 CGGCAGTTTGCTCGCTCC 61.793 66.667 0.67 0.00 44.28 4.70
486 487 2.980233 GTGGAGCGGCAGTTTGCT 60.980 61.111 1.45 0.00 44.28 3.91
487 488 2.348605 TTTGTGGAGCGGCAGTTTGC 62.349 55.000 1.45 0.00 44.08 3.68
488 489 0.102120 TTTTGTGGAGCGGCAGTTTG 59.898 50.000 1.45 0.00 0.00 2.93
489 490 1.000274 GATTTTGTGGAGCGGCAGTTT 60.000 47.619 1.45 0.00 0.00 2.66
490 491 0.598065 GATTTTGTGGAGCGGCAGTT 59.402 50.000 1.45 0.00 0.00 3.16
491 492 0.250901 AGATTTTGTGGAGCGGCAGT 60.251 50.000 1.45 0.00 0.00 4.40
492 493 1.667724 CTAGATTTTGTGGAGCGGCAG 59.332 52.381 1.45 0.00 0.00 4.85
493 494 1.678728 CCTAGATTTTGTGGAGCGGCA 60.679 52.381 1.45 0.00 0.00 5.69
494 495 1.017387 CCTAGATTTTGTGGAGCGGC 58.983 55.000 0.00 0.00 0.00 6.53
495 496 2.555199 CTCCTAGATTTTGTGGAGCGG 58.445 52.381 0.00 0.00 39.46 5.52
498 499 4.478206 TCAGCTCCTAGATTTTGTGGAG 57.522 45.455 0.00 0.00 46.38 3.86
499 500 4.471025 TCATCAGCTCCTAGATTTTGTGGA 59.529 41.667 0.00 0.00 0.00 4.02
500 501 4.774124 TCATCAGCTCCTAGATTTTGTGG 58.226 43.478 0.00 0.00 0.00 4.17
501 502 6.939132 ATTCATCAGCTCCTAGATTTTGTG 57.061 37.500 0.00 0.00 0.00 3.33
502 503 6.545298 GGAATTCATCAGCTCCTAGATTTTGT 59.455 38.462 7.93 0.00 0.00 2.83
503 504 6.016443 GGGAATTCATCAGCTCCTAGATTTTG 60.016 42.308 7.93 0.00 0.00 2.44
504 505 6.067350 GGGAATTCATCAGCTCCTAGATTTT 58.933 40.000 7.93 0.00 0.00 1.82
505 506 5.629125 GGGAATTCATCAGCTCCTAGATTT 58.371 41.667 7.93 0.00 0.00 2.17
506 507 4.262808 CGGGAATTCATCAGCTCCTAGATT 60.263 45.833 7.93 0.00 0.00 2.40
507 508 3.260380 CGGGAATTCATCAGCTCCTAGAT 59.740 47.826 7.93 0.00 0.00 1.98
508 509 2.630098 CGGGAATTCATCAGCTCCTAGA 59.370 50.000 7.93 0.00 0.00 2.43
509 510 2.630098 TCGGGAATTCATCAGCTCCTAG 59.370 50.000 7.93 0.00 0.00 3.02
510 511 2.677914 TCGGGAATTCATCAGCTCCTA 58.322 47.619 7.93 0.00 0.00 2.94
511 512 1.500474 TCGGGAATTCATCAGCTCCT 58.500 50.000 7.93 0.00 0.00 3.69
512 513 1.943340 GTTCGGGAATTCATCAGCTCC 59.057 52.381 7.93 0.00 0.00 4.70
513 514 1.594862 CGTTCGGGAATTCATCAGCTC 59.405 52.381 7.93 0.00 0.00 4.09
514 515 1.656652 CGTTCGGGAATTCATCAGCT 58.343 50.000 7.93 0.00 0.00 4.24
515 516 0.657840 CCGTTCGGGAATTCATCAGC 59.342 55.000 7.93 0.00 38.47 4.26
527 528 0.607217 AAGTTTAAGGCCCCGTTCGG 60.607 55.000 0.00 4.08 0.00 4.30
528 529 1.241165 AAAGTTTAAGGCCCCGTTCG 58.759 50.000 0.00 0.00 0.00 3.95
529 530 3.678289 TCTAAAGTTTAAGGCCCCGTTC 58.322 45.455 0.00 0.00 0.00 3.95
530 531 3.560668 CCTCTAAAGTTTAAGGCCCCGTT 60.561 47.826 0.00 0.00 0.00 4.44
531 532 2.026542 CCTCTAAAGTTTAAGGCCCCGT 60.027 50.000 0.00 0.00 0.00 5.28
532 533 2.640184 CCTCTAAAGTTTAAGGCCCCG 58.360 52.381 0.00 0.00 0.00 5.73
533 534 2.376109 GCCTCTAAAGTTTAAGGCCCC 58.624 52.381 24.10 9.16 46.97 5.80
537 538 8.552034 CGAATATTCAGCCTCTAAAGTTTAAGG 58.448 37.037 15.57 14.59 0.00 2.69
538 539 8.552034 CCGAATATTCAGCCTCTAAAGTTTAAG 58.448 37.037 15.57 0.00 0.00 1.85
541 542 5.297029 GCCGAATATTCAGCCTCTAAAGTTT 59.703 40.000 15.57 0.00 0.00 2.66
555 556 2.806608 TAGTGGACCGCCGAATATTC 57.193 50.000 5.30 5.30 36.79 1.75
556 557 3.764237 ATTAGTGGACCGCCGAATATT 57.236 42.857 0.08 0.00 36.79 1.28
562 563 1.743623 TGCAATTAGTGGACCGCCG 60.744 57.895 0.08 0.00 36.79 6.46
577 582 3.872603 AGCCAGAACACCGGTGCA 61.873 61.111 34.26 0.00 0.00 4.57
627 632 2.869801 TGAACGTCGACTTGCAAGAAAT 59.130 40.909 32.50 10.86 0.00 2.17
651 656 1.681327 TTCCGACGAAGAGGGGAGG 60.681 63.158 0.00 0.00 0.00 4.30
652 657 1.248785 TGTTCCGACGAAGAGGGGAG 61.249 60.000 0.00 0.00 0.00 4.30
653 658 0.613853 ATGTTCCGACGAAGAGGGGA 60.614 55.000 0.00 0.00 0.00 4.81
654 659 0.460284 CATGTTCCGACGAAGAGGGG 60.460 60.000 0.00 0.00 0.00 4.79
655 660 0.460284 CCATGTTCCGACGAAGAGGG 60.460 60.000 0.00 0.00 36.94 4.30
694 699 2.926838 GCTTAGAGAGAAAGTTCCGCTG 59.073 50.000 0.00 0.00 0.00 5.18
711 716 3.822940 TCTTCCTTCCGTTTTTGGCTTA 58.177 40.909 0.00 0.00 0.00 3.09
733 738 1.605712 CGCACGTTCCTTCTCCTTTCT 60.606 52.381 0.00 0.00 0.00 2.52
734 739 0.790814 CGCACGTTCCTTCTCCTTTC 59.209 55.000 0.00 0.00 0.00 2.62
865 874 2.407428 GCGCTGGGGCTTAAGAACC 61.407 63.158 6.67 7.77 36.09 3.62
919 928 0.897863 AGCGCTCAACAGAGGTCTCT 60.898 55.000 2.64 0.00 41.37 3.10
920 929 0.457681 GAGCGCTCAACAGAGGTCTC 60.458 60.000 31.91 0.00 42.05 3.36
936 958 1.424493 CGAGGCTTGTTCGATGGAGC 61.424 60.000 6.02 6.02 40.36 4.70
1305 1327 1.730487 CTCGGAGGAGGTGATCACG 59.270 63.158 19.33 6.53 36.61 4.35
1338 1360 3.718210 GAGGACCGGCACCGTCATC 62.718 68.421 0.00 9.02 37.81 2.92
1497 1519 2.738521 CCGCTGAACCTCACCACG 60.739 66.667 0.00 0.00 0.00 4.94
1524 1546 3.316573 CTCCGCCACCACCTTCTCC 62.317 68.421 0.00 0.00 0.00 3.71
1527 1549 1.376037 CTTCTCCGCCACCACCTTC 60.376 63.158 0.00 0.00 0.00 3.46
1700 1722 2.069273 CGGTAGCTGCATACATAAGGC 58.931 52.381 3.61 0.00 0.00 4.35
1701 1723 3.059884 CACGGTAGCTGCATACATAAGG 58.940 50.000 3.61 0.00 0.00 2.69
1702 1724 3.490896 CACACGGTAGCTGCATACATAAG 59.509 47.826 3.61 0.00 0.00 1.73
1743 1765 5.183140 GCTTAAACAGAATGGAAAGGCTACA 59.817 40.000 0.00 0.00 43.62 2.74
1749 1771 9.474920 TTTATTGTGCTTAAACAGAATGGAAAG 57.525 29.630 10.58 0.00 43.62 2.62
1780 1830 2.743664 TCAACATTCAGCAGACCATTCG 59.256 45.455 0.00 0.00 0.00 3.34
1785 1835 5.355071 TGTCAATATCAACATTCAGCAGACC 59.645 40.000 0.00 0.00 0.00 3.85
1799 1849 2.134354 TCCAGGGCCATGTCAATATCA 58.866 47.619 17.55 0.00 0.00 2.15
1803 1853 1.077501 CGTCCAGGGCCATGTCAAT 60.078 57.895 17.55 0.00 0.00 2.57
1805 1855 2.220586 TTCGTCCAGGGCCATGTCA 61.221 57.895 17.55 0.00 0.00 3.58
1806 1856 1.745489 GTTCGTCCAGGGCCATGTC 60.745 63.158 17.55 8.15 0.00 3.06
1807 1857 2.224159 AGTTCGTCCAGGGCCATGT 61.224 57.895 17.55 0.00 0.00 3.21
1808 1858 1.746615 CAGTTCGTCCAGGGCCATG 60.747 63.158 11.33 11.33 0.00 3.66
1809 1859 1.918293 TCAGTTCGTCCAGGGCCAT 60.918 57.895 6.18 0.00 0.00 4.40
1811 1861 2.047179 GTCAGTTCGTCCAGGGCC 60.047 66.667 0.00 0.00 0.00 5.80
1812 1862 2.430382 TTCGTCAGTTCGTCCAGGGC 62.430 60.000 0.00 0.00 0.00 5.19
1835 2299 5.049474 TGCCGCTTTGCAGTGATAAATATAG 60.049 40.000 0.00 0.00 36.04 1.31
1854 2318 2.280797 TGTCTGAGGTGTTGCCGC 60.281 61.111 0.00 0.00 43.70 6.53
1856 2320 1.148273 TGGTGTCTGAGGTGTTGCC 59.852 57.895 0.00 0.00 37.58 4.52
1864 2328 2.225068 AACGAGTTGTGGTGTCTGAG 57.775 50.000 0.00 0.00 0.00 3.35
1872 2336 6.548441 TCCAATTTAGTTAACGAGTTGTGG 57.452 37.500 14.42 12.17 0.00 4.17
1896 2361 4.566759 CACGTGAGTTTGAGAGTTTCTGAA 59.433 41.667 10.90 0.00 46.40 3.02
1963 2429 4.617520 TTCTTGTGCGAGGCGGCA 62.618 61.111 13.08 2.08 41.45 5.69
2070 2536 6.394025 GGAGTACTATGTTTACTCTCCCAG 57.606 45.833 0.00 0.00 43.44 4.45
2077 2543 8.747471 GTTTACAGAGGGAGTACTATGTTTACT 58.253 37.037 0.00 0.00 39.70 2.24
2091 2557 3.830755 AGAGCGTTTAGTTTACAGAGGGA 59.169 43.478 0.00 0.00 0.00 4.20
2092 2558 4.189639 AGAGCGTTTAGTTTACAGAGGG 57.810 45.455 0.00 0.00 0.00 4.30
2093 2559 9.530633 AATATAAGAGCGTTTAGTTTACAGAGG 57.469 33.333 0.00 0.00 0.00 3.69
2106 2572 9.924650 CCCTATGTAAACTAATATAAGAGCGTT 57.075 33.333 0.00 0.00 0.00 4.84
2107 2573 9.305555 TCCCTATGTAAACTAATATAAGAGCGT 57.694 33.333 0.00 0.00 0.00 5.07
2108 2574 9.790389 CTCCCTATGTAAACTAATATAAGAGCG 57.210 37.037 0.00 0.00 0.00 5.03
2116 2582 9.886337 TGGATGTACTCCCTATGTAAACTAATA 57.114 33.333 8.36 0.00 44.23 0.98
2117 2583 8.792830 TGGATGTACTCCCTATGTAAACTAAT 57.207 34.615 8.36 0.00 44.23 1.73
2118 2584 8.792830 ATGGATGTACTCCCTATGTAAACTAA 57.207 34.615 8.36 0.00 44.23 2.24
2119 2585 8.647796 CAATGGATGTACTCCCTATGTAAACTA 58.352 37.037 8.36 0.00 44.23 2.24
2120 2586 7.347222 TCAATGGATGTACTCCCTATGTAAACT 59.653 37.037 8.36 0.00 44.23 2.66
2121 2587 7.506114 TCAATGGATGTACTCCCTATGTAAAC 58.494 38.462 8.36 0.00 44.23 2.01
2122 2588 7.202093 CCTCAATGGATGTACTCCCTATGTAAA 60.202 40.741 8.36 0.00 44.23 2.01
2123 2589 6.270000 CCTCAATGGATGTACTCCCTATGTAA 59.730 42.308 8.36 0.00 44.23 2.41
2124 2590 5.780282 CCTCAATGGATGTACTCCCTATGTA 59.220 44.000 8.36 0.00 44.23 2.29
2125 2591 4.594920 CCTCAATGGATGTACTCCCTATGT 59.405 45.833 8.36 0.00 44.23 2.29
2126 2592 4.840680 TCCTCAATGGATGTACTCCCTATG 59.159 45.833 8.36 6.28 44.23 2.23
2127 2593 5.093236 TCCTCAATGGATGTACTCCCTAT 57.907 43.478 8.36 0.00 44.23 2.57
2128 2594 4.552883 TCCTCAATGGATGTACTCCCTA 57.447 45.455 8.36 0.00 44.23 3.53
2129 2595 3.421394 TCCTCAATGGATGTACTCCCT 57.579 47.619 8.36 0.00 44.23 4.20
2130 2596 3.745797 GCTTCCTCAATGGATGTACTCCC 60.746 52.174 8.36 3.66 45.68 4.30
2131 2597 3.135530 AGCTTCCTCAATGGATGTACTCC 59.864 47.826 0.00 0.00 45.68 3.85
2132 2598 4.125703 CAGCTTCCTCAATGGATGTACTC 58.874 47.826 0.00 0.00 45.68 2.59
2133 2599 3.776969 TCAGCTTCCTCAATGGATGTACT 59.223 43.478 0.00 0.00 45.68 2.73
2134 2600 4.142609 TCAGCTTCCTCAATGGATGTAC 57.857 45.455 0.00 0.00 45.68 2.90
2135 2601 4.842531 TTCAGCTTCCTCAATGGATGTA 57.157 40.909 0.00 0.00 45.68 2.29
2136 2602 3.726557 TTCAGCTTCCTCAATGGATGT 57.273 42.857 0.00 0.00 45.68 3.06
2137 2603 6.704289 TTATTTCAGCTTCCTCAATGGATG 57.296 37.500 0.00 0.00 45.68 3.51
2147 2613 4.328983 TCGTTCGTGATTATTTCAGCTTCC 59.671 41.667 0.00 0.00 34.17 3.46
2158 2624 9.752961 TGGATATCTTTTTATCGTTCGTGATTA 57.247 29.630 2.05 0.00 30.69 1.75
2169 2635 8.294341 TCAACGTCGATGGATATCTTTTTATC 57.706 34.615 9.90 0.00 0.00 1.75
2179 2645 4.713824 AGAACTTCAACGTCGATGGATA 57.286 40.909 9.90 0.00 0.00 2.59
2263 4444 8.857694 AGTTGGTTTAGCTTGCTTAAGTATTA 57.142 30.769 4.02 0.00 0.00 0.98
2363 4544 1.153628 GGCAGCATACTCGAACGGT 60.154 57.895 0.00 0.00 0.00 4.83
2417 4598 4.714308 GCCACTCTAGCATATCCCTCTAAT 59.286 45.833 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.