Multiple sequence alignment - TraesCS3A01G365400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G365400 chr3A 100.000 5209 0 0 1 5209 614685021 614690229 0.000000e+00 9620.0
1 TraesCS3A01G365400 chr7B 98.587 2194 31 0 1400 3593 480852379 480854572 0.000000e+00 3880.0
2 TraesCS3A01G365400 chr7B 94.936 1560 51 11 2038 3594 616820637 616819103 0.000000e+00 2418.0
3 TraesCS3A01G365400 chr7B 97.143 35 1 0 3747 3781 709818515 709818549 5.630000e-05 60.2
4 TraesCS3A01G365400 chr1B 98.542 2195 22 3 1400 3593 645298628 645300813 0.000000e+00 3868.0
5 TraesCS3A01G365400 chr1B 93.023 43 2 1 3739 3781 627925936 627925977 1.570000e-05 62.1
6 TraesCS3A01G365400 chr5B 98.131 2194 38 2 1400 3593 326998695 327000885 0.000000e+00 3821.0
7 TraesCS3A01G365400 chr5B 95.799 2190 58 13 1404 3593 440536996 440539151 0.000000e+00 3504.0
8 TraesCS3A01G365400 chrUn 96.592 2201 61 5 1404 3603 272194435 272192248 0.000000e+00 3637.0
9 TraesCS3A01G365400 chrUn 96.592 2201 61 5 1404 3603 281139595 281137408 0.000000e+00 3637.0
10 TraesCS3A01G365400 chrUn 95.238 42 1 1 3739 3780 79696307 79696267 1.210000e-06 65.8
11 TraesCS3A01G365400 chr4B 96.434 1935 64 3 1660 3593 673239866 673241796 0.000000e+00 3186.0
12 TraesCS3A01G365400 chr3B 99.192 619 5 0 2979 3597 32742806 32742188 0.000000e+00 1116.0
13 TraesCS3A01G365400 chr3B 91.858 565 33 5 4645 5204 627739779 627740335 0.000000e+00 776.0
14 TraesCS3A01G365400 chr3B 81.034 406 50 15 4016 4417 627729051 627729433 1.100000e-76 298.0
15 TraesCS3A01G365400 chr3B 91.878 197 16 0 1 197 627717451 627717647 5.140000e-70 276.0
16 TraesCS3A01G365400 chr3D 82.348 1116 135 29 1 1071 472120638 472121736 0.000000e+00 913.0
17 TraesCS3A01G365400 chr3D 86.972 568 40 12 4645 5200 472195581 472196126 4.460000e-170 608.0
18 TraesCS3A01G365400 chr3D 82.864 391 61 5 3590 3976 472193286 472193674 3.860000e-91 346.0
19 TraesCS3A01G365400 chr3D 81.481 405 49 15 4016 4417 472193676 472194057 5.070000e-80 309.0
20 TraesCS3A01G365400 chr3D 81.855 248 31 5 1077 1315 472193055 472193297 4.120000e-46 196.0
21 TraesCS3A01G365400 chr6D 78.780 377 64 10 1415 1789 388102075 388101713 6.740000e-59 239.0
22 TraesCS3A01G365400 chr2D 81.000 200 36 2 1591 1789 6914292 6914094 1.940000e-34 158.0
23 TraesCS3A01G365400 chr7A 100.000 81 0 0 1319 1399 617740970 617741050 3.250000e-32 150.0
24 TraesCS3A01G365400 chr7D 97.561 82 1 1 1319 1399 543629708 543629789 7.030000e-29 139.0
25 TraesCS3A01G365400 chr2A 80.682 88 17 0 2811 2898 778334893 778334980 9.360000e-08 69.4
26 TraesCS3A01G365400 chr6A 95.238 42 2 0 3747 3788 219626539 219626498 3.370000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G365400 chr3A 614685021 614690229 5208 False 9620.00 9620 100.000 1 5209 1 chr3A.!!$F1 5208
1 TraesCS3A01G365400 chr7B 480852379 480854572 2193 False 3880.00 3880 98.587 1400 3593 1 chr7B.!!$F1 2193
2 TraesCS3A01G365400 chr7B 616819103 616820637 1534 True 2418.00 2418 94.936 2038 3594 1 chr7B.!!$R1 1556
3 TraesCS3A01G365400 chr1B 645298628 645300813 2185 False 3868.00 3868 98.542 1400 3593 1 chr1B.!!$F2 2193
4 TraesCS3A01G365400 chr5B 326998695 327000885 2190 False 3821.00 3821 98.131 1400 3593 1 chr5B.!!$F1 2193
5 TraesCS3A01G365400 chr5B 440536996 440539151 2155 False 3504.00 3504 95.799 1404 3593 1 chr5B.!!$F2 2189
6 TraesCS3A01G365400 chrUn 272192248 272194435 2187 True 3637.00 3637 96.592 1404 3603 1 chrUn.!!$R2 2199
7 TraesCS3A01G365400 chrUn 281137408 281139595 2187 True 3637.00 3637 96.592 1404 3603 1 chrUn.!!$R3 2199
8 TraesCS3A01G365400 chr4B 673239866 673241796 1930 False 3186.00 3186 96.434 1660 3593 1 chr4B.!!$F1 1933
9 TraesCS3A01G365400 chr3B 32742188 32742806 618 True 1116.00 1116 99.192 2979 3597 1 chr3B.!!$R1 618
10 TraesCS3A01G365400 chr3B 627739779 627740335 556 False 776.00 776 91.858 4645 5204 1 chr3B.!!$F3 559
11 TraesCS3A01G365400 chr3D 472120638 472121736 1098 False 913.00 913 82.348 1 1071 1 chr3D.!!$F1 1070
12 TraesCS3A01G365400 chr3D 472193055 472196126 3071 False 364.75 608 83.293 1077 5200 4 chr3D.!!$F2 4123

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
733 769 2.093447 CGATAAGGGTGCCTTCTGTCTT 60.093 50.000 0.00 0.00 43.57 3.01 F
1361 1413 0.032615 CCCATTTCCATTCCCCCGAA 60.033 55.000 0.00 0.00 0.00 4.30 F
1376 1428 0.319555 CCGAAGGCTCAGTCGTCAAA 60.320 55.000 6.36 0.00 46.14 2.69 F
1378 1430 1.391485 CGAAGGCTCAGTCGTCAAATG 59.609 52.381 0.00 0.00 32.61 2.32 F
2339 2391 2.438795 CACAACCCGGGGATGGTT 59.561 61.111 27.92 6.42 46.92 3.67 F
3892 3953 0.038067 TTGCCAATGCTCATGTGTGC 60.038 50.000 0.00 0.40 38.71 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2177 2229 0.317160 TCGCTGTTGTCACGATCCTT 59.683 50.000 0.00 0.0 0.00 3.36 R
2339 2391 0.452987 CGTCCGACGTAAATCCAGGA 59.547 55.000 12.91 0.0 36.74 3.86 R
2633 2688 3.745546 CCCATCTGAGGAAGGGCA 58.254 61.111 0.00 0.0 42.56 5.36 R
3640 3701 0.037303 ACCACCACATGCCTCTTCAG 59.963 55.000 0.00 0.0 0.00 3.02 R
4010 4072 0.311165 CGAATACCGTGCCTCTCGAT 59.689 55.000 0.00 0.0 0.00 3.59 R
4702 6076 0.834687 AAGGTCAACCCTCCGTAGCA 60.835 55.000 0.00 0.0 45.47 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 3.188460 CCGACGAAATCAACTTTGTGGAT 59.812 43.478 0.00 0.00 0.00 3.41
84 85 2.811431 CAAGTTACCGAGGTCATGCAAA 59.189 45.455 0.00 0.00 0.00 3.68
85 86 2.699954 AGTTACCGAGGTCATGCAAAG 58.300 47.619 0.00 0.00 0.00 2.77
90 91 2.236146 ACCGAGGTCATGCAAAGATACA 59.764 45.455 0.00 0.00 0.00 2.29
120 121 8.450964 TGAATTAAAGAGCTTGTATTTCTTCCG 58.549 33.333 0.00 0.00 31.16 4.30
123 124 4.273148 AGAGCTTGTATTTCTTCCGTGT 57.727 40.909 0.00 0.00 0.00 4.49
131 132 5.547465 TGTATTTCTTCCGTGTCACAATCT 58.453 37.500 3.42 0.00 0.00 2.40
139 140 4.304110 TCCGTGTCACAATCTAAGTTGTC 58.696 43.478 3.42 0.00 40.17 3.18
146 147 3.814842 CACAATCTAAGTTGTCCAGTGCA 59.185 43.478 0.00 0.00 40.17 4.57
151 152 4.065088 TCTAAGTTGTCCAGTGCATTGAC 58.935 43.478 11.31 8.40 0.00 3.18
169 170 7.431960 TGCATTGACATGATCTTTAATTAACGC 59.568 33.333 0.00 0.00 31.07 4.84
170 171 7.356719 GCATTGACATGATCTTTAATTAACGCG 60.357 37.037 3.53 3.53 31.07 6.01
175 176 8.589335 ACATGATCTTTAATTAACGCGATAGT 57.411 30.769 15.93 0.00 39.35 2.12
221 243 6.148811 AGTTATGTTGGTTTACATGGTCTTCG 59.851 38.462 0.00 0.00 39.06 3.79
241 263 5.988310 TCGAGTTCCCTAGTTCATTAACA 57.012 39.130 0.00 0.00 38.12 2.41
244 266 8.070034 TCGAGTTCCCTAGTTCATTAACATAA 57.930 34.615 0.00 0.00 38.12 1.90
272 294 9.589111 TTAAGTGTTTCAACCCTTTTCATAAAC 57.411 29.630 0.00 0.00 29.50 2.01
310 332 7.657354 TCTGAAATCATATTCTACAATGGACCG 59.343 37.037 0.00 0.00 0.00 4.79
322 344 2.667473 ATGGACCGTGCTAGTAACAC 57.333 50.000 0.00 0.00 34.62 3.32
331 353 4.626321 GTGCTAGTAACACGAACAAGAC 57.374 45.455 0.00 0.00 0.00 3.01
334 356 6.091437 GTGCTAGTAACACGAACAAGACTAT 58.909 40.000 0.00 0.00 0.00 2.12
338 360 7.488471 GCTAGTAACACGAACAAGACTATCAAT 59.512 37.037 0.00 0.00 0.00 2.57
340 362 8.603242 AGTAACACGAACAAGACTATCAATTT 57.397 30.769 0.00 0.00 0.00 1.82
341 363 9.052759 AGTAACACGAACAAGACTATCAATTTT 57.947 29.630 0.00 0.00 0.00 1.82
342 364 9.103048 GTAACACGAACAAGACTATCAATTTTG 57.897 33.333 0.00 0.00 0.00 2.44
343 365 7.490962 ACACGAACAAGACTATCAATTTTGA 57.509 32.000 0.00 0.00 42.14 2.69
345 367 8.567948 ACACGAACAAGACTATCAATTTTGATT 58.432 29.630 10.81 0.00 45.13 2.57
423 445 8.715191 AAAGATACATTCAAGAAGCAGAGTAG 57.285 34.615 0.00 0.00 0.00 2.57
437 459 3.561725 GCAGAGTAGAGTGCACTTTTGTT 59.438 43.478 22.65 6.17 39.62 2.83
469 493 9.557061 TCTAGTTCTACATATACAAGATGACGT 57.443 33.333 0.00 0.00 0.00 4.34
505 530 9.908152 GACAAACACTAAATTAGCTAAAATGGT 57.092 29.630 10.85 7.58 0.00 3.55
508 533 9.620660 AAACACTAAATTAGCTAAAATGGTTCG 57.379 29.630 10.85 2.95 0.00 3.95
512 537 7.771826 ACTAAATTAGCTAAAATGGTTCGCCTA 59.228 33.333 10.85 0.00 38.36 3.93
524 549 3.319972 TGGTTCGCCTATAGTATGTGTCC 59.680 47.826 0.00 0.26 38.36 4.02
533 558 8.301720 CGCCTATAGTATGTGTCCTAACATTAA 58.698 37.037 0.00 0.00 41.09 1.40
566 594 7.822822 GGTACACATAAGGTCCCAATATGTATC 59.177 40.741 11.93 1.25 37.99 2.24
567 595 7.633018 ACACATAAGGTCCCAATATGTATCT 57.367 36.000 11.93 0.68 37.99 1.98
572 600 8.826765 CATAAGGTCCCAATATGTATCTAAGGT 58.173 37.037 0.00 0.00 0.00 3.50
712 747 5.241728 AGAGAAATCACTTGCCTTGGTTTAC 59.758 40.000 0.00 0.00 27.10 2.01
721 756 2.306512 TGCCTTGGTTTACGATAAGGGT 59.693 45.455 0.00 0.00 39.99 4.34
722 757 2.681344 GCCTTGGTTTACGATAAGGGTG 59.319 50.000 0.00 0.00 39.99 4.61
724 759 2.406596 TGGTTTACGATAAGGGTGCC 57.593 50.000 0.00 0.00 0.00 5.01
726 761 2.306512 TGGTTTACGATAAGGGTGCCTT 59.693 45.455 0.00 0.00 46.63 4.35
727 762 2.941064 GGTTTACGATAAGGGTGCCTTC 59.059 50.000 0.00 0.00 43.57 3.46
733 769 2.093447 CGATAAGGGTGCCTTCTGTCTT 60.093 50.000 0.00 0.00 43.57 3.01
746 782 9.174166 GTGCCTTCTGTCTTTATTCCTTATAAA 57.826 33.333 0.00 0.00 36.57 1.40
763 799 8.955794 TCCTTATAAATTGGCCTTAAGGTCTAT 58.044 33.333 25.97 20.99 41.34 1.98
781 817 6.964741 GTCTATCGACCTCGTCTGATATAA 57.035 41.667 0.00 0.05 40.80 0.98
782 818 6.764094 GTCTATCGACCTCGTCTGATATAAC 58.236 44.000 0.00 5.80 40.80 1.89
783 819 6.368243 GTCTATCGACCTCGTCTGATATAACA 59.632 42.308 0.00 0.00 40.80 2.41
786 822 5.575957 TCGACCTCGTCTGATATAACAAAC 58.424 41.667 0.00 0.00 40.80 2.93
788 824 4.679662 ACCTCGTCTGATATAACAAACCG 58.320 43.478 0.00 0.00 0.00 4.44
812 850 7.146648 CGAAAGTCCTACAATATAAGACCTCC 58.853 42.308 0.00 0.00 0.00 4.30
813 851 6.997942 AAGTCCTACAATATAAGACCTCCC 57.002 41.667 0.00 0.00 0.00 4.30
846 885 8.877864 TTAAGATGGGCTTATACAATAATGGG 57.122 34.615 0.00 0.00 38.79 4.00
893 932 5.731599 CTCACCTATGAGTGAAAAGATGC 57.268 43.478 1.85 0.00 45.77 3.91
894 933 4.517285 TCACCTATGAGTGAAAAGATGCC 58.483 43.478 0.00 0.00 43.65 4.40
895 934 3.310774 CACCTATGAGTGAAAAGATGCCG 59.689 47.826 0.00 0.00 40.34 5.69
901 940 2.742053 GAGTGAAAAGATGCCGCTACAA 59.258 45.455 0.00 0.00 0.00 2.41
903 942 4.513442 AGTGAAAAGATGCCGCTACAATA 58.487 39.130 0.00 0.00 0.00 1.90
904 943 4.332819 AGTGAAAAGATGCCGCTACAATAC 59.667 41.667 0.00 0.00 0.00 1.89
911 950 6.531503 AGATGCCGCTACAATACATATAGT 57.468 37.500 0.00 0.00 0.00 2.12
912 951 6.333416 AGATGCCGCTACAATACATATAGTG 58.667 40.000 0.00 0.00 32.53 2.74
1014 1058 1.824852 GTGGCCAAACCTTAGGGATTG 59.175 52.381 7.24 6.88 42.66 2.67
1017 1061 2.903784 GGCCAAACCTTAGGGATTGTTT 59.096 45.455 12.07 0.00 41.82 2.83
1018 1062 3.326588 GGCCAAACCTTAGGGATTGTTTT 59.673 43.478 12.07 0.00 41.82 2.43
1019 1063 4.202419 GGCCAAACCTTAGGGATTGTTTTT 60.202 41.667 12.07 0.00 41.82 1.94
1051 1095 6.211184 TGCTTGAGACCCAATTTTTCACATAT 59.789 34.615 0.00 0.00 33.68 1.78
1053 1097 7.063780 GCTTGAGACCCAATTTTTCACATATTG 59.936 37.037 0.00 0.00 33.68 1.90
1054 1098 6.934056 TGAGACCCAATTTTTCACATATTGG 58.066 36.000 0.00 0.00 45.04 3.16
1124 1168 7.370383 TCTCTTTCACATTATTTGCCTTGTTC 58.630 34.615 0.00 0.00 0.00 3.18
1126 1170 7.147312 TCTTTCACATTATTTGCCTTGTTCTG 58.853 34.615 0.00 0.00 0.00 3.02
1131 1175 5.047802 ACATTATTTGCCTTGTTCTGGAGTG 60.048 40.000 0.00 0.00 0.00 3.51
1132 1176 1.691196 TTTGCCTTGTTCTGGAGTGG 58.309 50.000 0.00 0.00 0.00 4.00
1136 1180 1.528129 CCTTGTTCTGGAGTGGCTTC 58.472 55.000 0.00 0.00 0.00 3.86
1142 1186 2.680339 GTTCTGGAGTGGCTTCTTATGC 59.320 50.000 0.00 0.00 0.00 3.14
1153 1197 7.644986 GTGGCTTCTTATGCTACTATACTTG 57.355 40.000 0.00 0.00 38.58 3.16
1158 1202 9.535878 GCTTCTTATGCTACTATACTTGTTTCT 57.464 33.333 0.00 0.00 0.00 2.52
1179 1231 1.228675 GGATGGGGGTGCATGGATC 60.229 63.158 0.00 0.00 0.00 3.36
1188 1240 1.684983 GGTGCATGGATCCCTCAATTG 59.315 52.381 9.90 0.00 0.00 2.32
1195 1247 3.565307 TGGATCCCTCAATTGTTATGGC 58.435 45.455 9.90 0.00 0.00 4.40
1210 1262 2.331893 TGGCGTACATGGCACTTGC 61.332 57.895 0.00 0.00 39.79 4.01
1216 1268 0.451383 TACATGGCACTTGCGCAATC 59.549 50.000 25.26 15.21 43.26 2.67
1219 1271 0.961857 ATGGCACTTGCGCAATCAGA 60.962 50.000 25.26 7.37 43.26 3.27
1220 1272 1.154150 GGCACTTGCGCAATCAGAC 60.154 57.895 25.26 14.80 43.26 3.51
1221 1273 1.575922 GCACTTGCGCAATCAGACA 59.424 52.632 25.26 0.00 0.00 3.41
1222 1274 0.169672 GCACTTGCGCAATCAGACAT 59.830 50.000 25.26 0.43 0.00 3.06
1223 1275 1.891178 CACTTGCGCAATCAGACATG 58.109 50.000 25.26 11.77 0.00 3.21
1224 1276 0.806868 ACTTGCGCAATCAGACATGG 59.193 50.000 25.26 10.99 0.00 3.66
1234 1286 1.750018 CAGACATGGCGCATGGGAA 60.750 57.895 14.90 0.61 45.16 3.97
1235 1287 1.001020 AGACATGGCGCATGGGAAA 60.001 52.632 14.90 0.21 45.16 3.13
1248 1300 2.496899 TGGGAAAGGAGATGCTTCAC 57.503 50.000 2.07 0.00 0.00 3.18
1257 1309 7.201652 GGAAAGGAGATGCTTCACAATAACTAC 60.202 40.741 2.07 0.00 0.00 2.73
1264 1316 4.243270 GCTTCACAATAACTACTGGTCGT 58.757 43.478 0.00 0.00 0.00 4.34
1268 1320 3.924686 CACAATAACTACTGGTCGTCACC 59.075 47.826 0.00 0.00 44.10 4.02
1270 1322 1.549203 TAACTACTGGTCGTCACCCC 58.451 55.000 0.00 0.00 42.99 4.95
1272 1324 1.676635 CTACTGGTCGTCACCCCGA 60.677 63.158 0.00 0.00 42.99 5.14
1306 1358 9.632638 AAGTTGGTGCAATAGTAGATATCAAAT 57.367 29.630 5.32 0.00 0.00 2.32
1325 1377 2.124293 GGAAAATTCCGGGATGCCC 58.876 57.895 0.00 0.00 41.09 5.36
1352 1404 2.123726 GGCCTCGCCCATTTCCAT 60.124 61.111 0.00 0.00 44.06 3.41
1353 1405 1.758122 GGCCTCGCCCATTTCCATT 60.758 57.895 0.00 0.00 44.06 3.16
1354 1406 1.735973 GCCTCGCCCATTTCCATTC 59.264 57.895 0.00 0.00 0.00 2.67
1355 1407 1.738346 GCCTCGCCCATTTCCATTCC 61.738 60.000 0.00 0.00 0.00 3.01
1356 1408 1.109323 CCTCGCCCATTTCCATTCCC 61.109 60.000 0.00 0.00 0.00 3.97
1357 1409 1.076339 TCGCCCATTTCCATTCCCC 60.076 57.895 0.00 0.00 0.00 4.81
1358 1410 2.133641 CGCCCATTTCCATTCCCCC 61.134 63.158 0.00 0.00 0.00 5.40
1359 1411 2.133641 GCCCATTTCCATTCCCCCG 61.134 63.158 0.00 0.00 0.00 5.73
1360 1412 1.618030 CCCATTTCCATTCCCCCGA 59.382 57.895 0.00 0.00 0.00 5.14
1361 1413 0.032615 CCCATTTCCATTCCCCCGAA 60.033 55.000 0.00 0.00 0.00 4.30
1362 1414 1.402787 CCATTTCCATTCCCCCGAAG 58.597 55.000 0.00 0.00 0.00 3.79
1374 1426 2.962569 CCGAAGGCTCAGTCGTCA 59.037 61.111 6.36 0.00 46.14 4.35
1375 1427 1.289066 CCGAAGGCTCAGTCGTCAA 59.711 57.895 6.36 0.00 46.14 3.18
1376 1428 0.319555 CCGAAGGCTCAGTCGTCAAA 60.320 55.000 6.36 0.00 46.14 2.69
1377 1429 1.673033 CCGAAGGCTCAGTCGTCAAAT 60.673 52.381 6.36 0.00 46.14 2.32
1378 1430 1.391485 CGAAGGCTCAGTCGTCAAATG 59.609 52.381 0.00 0.00 32.61 2.32
1379 1431 2.688507 GAAGGCTCAGTCGTCAAATGA 58.311 47.619 0.00 0.00 0.00 2.57
1380 1432 2.839486 AGGCTCAGTCGTCAAATGAA 57.161 45.000 0.00 0.00 0.00 2.57
1381 1433 3.126001 AGGCTCAGTCGTCAAATGAAA 57.874 42.857 0.00 0.00 0.00 2.69
1382 1434 3.679389 AGGCTCAGTCGTCAAATGAAAT 58.321 40.909 0.00 0.00 0.00 2.17
1383 1435 3.686726 AGGCTCAGTCGTCAAATGAAATC 59.313 43.478 0.00 0.00 0.00 2.17
1384 1436 3.484229 GGCTCAGTCGTCAAATGAAATCG 60.484 47.826 0.00 0.00 0.00 3.34
1385 1437 3.367932 GCTCAGTCGTCAAATGAAATCGA 59.632 43.478 0.00 0.00 0.00 3.59
1386 1438 4.033358 GCTCAGTCGTCAAATGAAATCGAT 59.967 41.667 0.00 0.00 33.35 3.59
1387 1439 5.232202 GCTCAGTCGTCAAATGAAATCGATA 59.768 40.000 0.00 0.00 33.35 2.92
1388 1440 6.237835 GCTCAGTCGTCAAATGAAATCGATAA 60.238 38.462 0.00 0.00 33.35 1.75
1389 1441 7.589574 TCAGTCGTCAAATGAAATCGATAAA 57.410 32.000 0.00 0.00 33.35 1.40
1390 1442 7.675478 TCAGTCGTCAAATGAAATCGATAAAG 58.325 34.615 0.00 0.00 33.35 1.85
1391 1443 7.544217 TCAGTCGTCAAATGAAATCGATAAAGA 59.456 33.333 0.00 0.00 33.35 2.52
1392 1444 8.168626 CAGTCGTCAAATGAAATCGATAAAGAA 58.831 33.333 0.00 0.00 33.35 2.52
1393 1445 8.717821 AGTCGTCAAATGAAATCGATAAAGAAA 58.282 29.630 0.00 0.00 33.35 2.52
1394 1446 9.325150 GTCGTCAAATGAAATCGATAAAGAAAA 57.675 29.630 0.00 0.00 33.35 2.29
1395 1447 9.541724 TCGTCAAATGAAATCGATAAAGAAAAG 57.458 29.630 0.00 0.00 0.00 2.27
1396 1448 8.788813 CGTCAAATGAAATCGATAAAGAAAAGG 58.211 33.333 0.00 0.00 0.00 3.11
1397 1449 9.840427 GTCAAATGAAATCGATAAAGAAAAGGA 57.160 29.630 0.00 0.00 0.00 3.36
1588 1640 3.695606 GCGCAGGTCTCCCACTCA 61.696 66.667 0.30 0.00 0.00 3.41
2339 2391 2.438795 CACAACCCGGGGATGGTT 59.561 61.111 27.92 6.42 46.92 3.67
2591 2646 2.596338 TGCGTCACTCCTCCGTCA 60.596 61.111 0.00 0.00 0.00 4.35
3652 3713 3.806380 AGATTAGTGCTGAAGAGGCATG 58.194 45.455 0.00 0.00 41.86 4.06
3654 3715 2.391616 TAGTGCTGAAGAGGCATGTG 57.608 50.000 0.00 0.00 41.86 3.21
3669 3730 2.556189 GCATGTGGTGGTCATGTTTGTA 59.444 45.455 7.55 0.00 42.94 2.41
3670 3731 3.611530 GCATGTGGTGGTCATGTTTGTAC 60.612 47.826 7.55 0.00 42.94 2.90
3673 3734 4.211125 TGTGGTGGTCATGTTTGTACAAT 58.789 39.130 9.56 0.00 37.91 2.71
3675 3736 4.981674 GTGGTGGTCATGTTTGTACAATTG 59.018 41.667 9.56 3.24 37.91 2.32
3684 3745 9.155975 GTCATGTTTGTACAATTGAGATAGAGT 57.844 33.333 13.59 0.00 37.91 3.24
3730 3791 7.886338 GCTAGGCAAAGCTTAATATTAACCAT 58.114 34.615 0.00 0.00 39.50 3.55
3759 3820 9.214957 TGATTTTGGTCGGTGCTTTATATATAG 57.785 33.333 0.00 0.00 0.00 1.31
3762 3823 5.962433 TGGTCGGTGCTTTATATATAGAGC 58.038 41.667 22.42 22.42 39.97 4.09
3766 3827 4.694339 GGTGCTTTATATATAGAGCGGGG 58.306 47.826 23.15 0.00 41.78 5.73
3767 3828 4.120589 GTGCTTTATATATAGAGCGGGGC 58.879 47.826 23.15 13.37 41.78 5.80
3794 3855 6.809630 AGCCTATTTTGAGAGAGTTTTGTC 57.190 37.500 0.00 0.00 0.00 3.18
3795 3856 6.538263 AGCCTATTTTGAGAGAGTTTTGTCT 58.462 36.000 0.00 0.00 0.00 3.41
3798 3859 7.065204 GCCTATTTTGAGAGAGTTTTGTCTAGG 59.935 40.741 0.00 0.00 0.00 3.02
3804 3865 7.067496 TGAGAGAGTTTTGTCTAGGAAACAT 57.933 36.000 15.02 7.11 38.03 2.71
3807 3868 5.376625 AGAGTTTTGTCTAGGAAACATGCA 58.623 37.500 15.02 0.00 38.03 3.96
3814 3875 5.312895 TGTCTAGGAAACATGCAAAGCTTA 58.687 37.500 0.00 0.00 0.00 3.09
3833 3894 4.824289 CTTAGGCATGCTTGTTTGGAATT 58.176 39.130 18.92 0.00 0.00 2.17
3835 3896 2.078392 GGCATGCTTGTTTGGAATTGG 58.922 47.619 18.92 0.00 0.00 3.16
3844 3905 2.971330 TGTTTGGAATTGGCAAGGTGAT 59.029 40.909 5.96 0.00 0.00 3.06
3882 3943 1.711500 GCGCTTCATTTGCCAATGC 59.289 52.632 0.00 0.00 39.90 3.56
3883 3944 0.738412 GCGCTTCATTTGCCAATGCT 60.738 50.000 0.00 0.00 39.90 3.79
3890 3951 2.563620 TCATTTGCCAATGCTCATGTGT 59.436 40.909 5.64 0.00 39.90 3.72
3892 3953 0.038067 TTGCCAATGCTCATGTGTGC 60.038 50.000 0.00 0.40 38.71 4.57
3895 3956 0.172578 CCAATGCTCATGTGTGCAGG 59.827 55.000 14.07 8.02 45.88 4.85
3896 3957 1.170442 CAATGCTCATGTGTGCAGGA 58.830 50.000 14.07 0.00 45.88 3.86
3915 3977 5.263599 CAGGAGATAGAGATCCTAGCATGT 58.736 45.833 8.54 0.00 44.30 3.21
3920 3982 5.751428 AGATAGAGATCCTAGCATGTGCTGA 60.751 44.000 17.29 7.55 41.50 4.26
3922 3984 8.927695 AGATAGAGATCCTAGCATGTGCTGAAG 61.928 44.444 17.29 7.68 41.50 3.02
3930 3992 2.884827 GCATGTGCTGAAGGAATTTCC 58.115 47.619 7.39 7.39 38.21 3.13
3937 3999 2.555227 GCTGAAGGAATTTCCCTGGTGA 60.555 50.000 11.92 0.00 37.19 4.02
3938 4000 3.084786 CTGAAGGAATTTCCCTGGTGAC 58.915 50.000 11.92 0.00 37.19 3.67
3940 4002 3.075882 TGAAGGAATTTCCCTGGTGACAT 59.924 43.478 11.92 0.00 37.19 3.06
3942 4004 5.044179 TGAAGGAATTTCCCTGGTGACATAT 60.044 40.000 11.92 0.00 37.19 1.78
3943 4005 5.472301 AGGAATTTCCCTGGTGACATATT 57.528 39.130 11.92 0.00 37.19 1.28
3956 4018 3.313526 GTGACATATTGAGTGTGGATGCC 59.686 47.826 0.00 0.00 0.00 4.40
3957 4019 3.200605 TGACATATTGAGTGTGGATGCCT 59.799 43.478 0.00 0.00 0.00 4.75
3958 4020 3.548770 ACATATTGAGTGTGGATGCCTG 58.451 45.455 0.00 0.00 0.00 4.85
3964 4026 1.267806 GAGTGTGGATGCCTGTTGTTG 59.732 52.381 0.00 0.00 0.00 3.33
3970 4032 1.895131 GGATGCCTGTTGTTGTGGAAT 59.105 47.619 0.00 0.00 0.00 3.01
3976 4038 1.535462 CTGTTGTTGTGGAATCCGACC 59.465 52.381 0.00 0.00 0.00 4.79
3977 4039 0.515564 GTTGTTGTGGAATCCGACCG 59.484 55.000 0.00 0.00 0.00 4.79
3978 4040 1.231958 TTGTTGTGGAATCCGACCGC 61.232 55.000 0.00 0.00 38.27 5.68
3979 4041 2.433491 TTGTGGAATCCGACCGCG 60.433 61.111 0.00 0.00 40.35 6.46
3980 4042 3.229156 TTGTGGAATCCGACCGCGT 62.229 57.895 4.92 0.00 40.35 6.01
3981 4043 2.884207 GTGGAATCCGACCGCGTC 60.884 66.667 4.92 1.63 35.23 5.19
3982 4044 3.375239 TGGAATCCGACCGCGTCA 61.375 61.111 4.92 0.00 35.23 4.35
3983 4045 2.582498 GGAATCCGACCGCGTCAG 60.582 66.667 4.92 0.00 35.23 3.51
3984 4046 2.181021 GAATCCGACCGCGTCAGT 59.819 61.111 4.92 0.00 35.23 3.41
3985 4047 2.126071 AATCCGACCGCGTCAGTG 60.126 61.111 4.92 0.00 35.23 3.66
3986 4048 2.537792 GAATCCGACCGCGTCAGTGA 62.538 60.000 4.92 0.00 35.23 3.41
3987 4049 2.814183 AATCCGACCGCGTCAGTGAC 62.814 60.000 13.56 13.56 35.23 3.67
3988 4050 4.039357 CCGACCGCGTCAGTGACT 62.039 66.667 20.64 1.88 35.23 3.41
3989 4051 2.683859 CCGACCGCGTCAGTGACTA 61.684 63.158 20.64 0.00 35.23 2.59
3990 4052 1.226046 CGACCGCGTCAGTGACTAG 60.226 63.158 20.64 13.55 32.09 2.57
3991 4053 1.632948 CGACCGCGTCAGTGACTAGA 61.633 60.000 20.64 0.00 32.09 2.43
3992 4054 0.179194 GACCGCGTCAGTGACTAGAC 60.179 60.000 20.64 6.99 32.09 2.59
3993 4055 0.887836 ACCGCGTCAGTGACTAGACA 60.888 55.000 20.64 0.00 34.48 3.41
3994 4056 0.240145 CCGCGTCAGTGACTAGACAA 59.760 55.000 20.64 0.00 34.48 3.18
3995 4057 1.135373 CCGCGTCAGTGACTAGACAAT 60.135 52.381 20.64 0.00 34.48 2.71
3996 4058 2.596452 CGCGTCAGTGACTAGACAATT 58.404 47.619 20.64 0.00 34.48 2.32
3997 4059 2.594654 CGCGTCAGTGACTAGACAATTC 59.405 50.000 20.64 0.00 34.48 2.17
3998 4060 3.670895 CGCGTCAGTGACTAGACAATTCT 60.671 47.826 20.64 0.00 34.48 2.40
3999 4061 4.238514 GCGTCAGTGACTAGACAATTCTT 58.761 43.478 20.64 0.00 34.48 2.52
4000 4062 4.686554 GCGTCAGTGACTAGACAATTCTTT 59.313 41.667 20.64 0.00 34.48 2.52
4001 4063 5.388890 GCGTCAGTGACTAGACAATTCTTTG 60.389 44.000 20.64 1.62 38.86 2.77
4002 4064 5.920840 CGTCAGTGACTAGACAATTCTTTGA 59.079 40.000 20.64 0.00 36.64 2.69
4003 4065 6.088749 CGTCAGTGACTAGACAATTCTTTGAG 59.911 42.308 20.64 0.00 36.64 3.02
4004 4066 7.148641 GTCAGTGACTAGACAATTCTTTGAGA 58.851 38.462 16.26 0.00 36.64 3.27
4005 4067 7.816995 GTCAGTGACTAGACAATTCTTTGAGAT 59.183 37.037 16.26 0.00 36.64 2.75
4006 4068 8.031864 TCAGTGACTAGACAATTCTTTGAGATC 58.968 37.037 0.00 0.00 36.64 2.75
4007 4069 7.816513 CAGTGACTAGACAATTCTTTGAGATCA 59.183 37.037 0.00 0.00 36.64 2.92
4008 4070 7.816995 AGTGACTAGACAATTCTTTGAGATCAC 59.183 37.037 0.00 0.00 36.64 3.06
4009 4071 7.064016 GTGACTAGACAATTCTTTGAGATCACC 59.936 40.741 0.00 0.00 36.64 4.02
4010 4072 7.009179 ACTAGACAATTCTTTGAGATCACCA 57.991 36.000 0.00 0.00 36.64 4.17
4011 4073 7.628234 ACTAGACAATTCTTTGAGATCACCAT 58.372 34.615 0.00 0.00 36.64 3.55
4012 4074 6.998968 AGACAATTCTTTGAGATCACCATC 57.001 37.500 0.00 0.00 36.64 3.51
4013 4075 5.583854 AGACAATTCTTTGAGATCACCATCG 59.416 40.000 0.00 0.00 36.64 3.84
4014 4076 5.491070 ACAATTCTTTGAGATCACCATCGA 58.509 37.500 0.00 0.00 36.64 3.59
4023 4085 2.021068 ATCACCATCGAGAGGCACGG 62.021 60.000 6.60 0.00 0.00 4.94
4024 4086 2.680352 ACCATCGAGAGGCACGGT 60.680 61.111 6.60 0.00 0.00 4.83
4028 4090 1.603172 CCATCGAGAGGCACGGTATTC 60.603 57.143 0.00 0.00 0.00 1.75
4037 4099 2.093128 AGGCACGGTATTCGATTTCCTT 60.093 45.455 0.00 0.00 42.43 3.36
4041 4103 4.330620 GCACGGTATTCGATTTCCTTGTTA 59.669 41.667 9.92 0.00 42.43 2.41
4045 4107 5.006358 CGGTATTCGATTTCCTTGTTACCAG 59.994 44.000 0.00 0.00 42.43 4.00
4053 4115 6.128391 CGATTTCCTTGTTACCAGATTTTCGA 60.128 38.462 0.00 0.00 0.00 3.71
4057 4119 5.646360 TCCTTGTTACCAGATTTTCGAATCC 59.354 40.000 0.00 0.00 0.00 3.01
4069 4131 2.288961 TCGAATCCACGAGGCTAAAC 57.711 50.000 0.00 0.00 37.37 2.01
4073 4135 1.940883 ATCCACGAGGCTAAACGCGA 61.941 55.000 15.93 0.00 40.44 5.87
4109 4171 2.256461 CGAGCTTGCCCACTTTGC 59.744 61.111 0.00 0.00 0.00 3.68
4111 4173 2.519302 AGCTTGCCCACTTTGCGT 60.519 55.556 0.00 0.00 0.00 5.24
4112 4174 2.355009 GCTTGCCCACTTTGCGTG 60.355 61.111 0.00 0.00 43.41 5.34
4127 4189 0.517316 GCGTGTGGGAATGTGAACTC 59.483 55.000 0.00 0.00 0.00 3.01
4128 4190 0.790207 CGTGTGGGAATGTGAACTCG 59.210 55.000 0.00 0.00 0.00 4.18
4129 4191 1.604438 CGTGTGGGAATGTGAACTCGA 60.604 52.381 0.00 0.00 32.85 4.04
4130 4192 1.798813 GTGTGGGAATGTGAACTCGAC 59.201 52.381 0.00 0.00 0.00 4.20
4131 4193 1.414550 TGTGGGAATGTGAACTCGACA 59.585 47.619 0.00 0.00 0.00 4.35
4132 4194 2.069273 GTGGGAATGTGAACTCGACAG 58.931 52.381 0.00 0.00 0.00 3.51
4133 4195 1.691976 TGGGAATGTGAACTCGACAGT 59.308 47.619 0.00 0.00 0.00 3.55
4134 4196 2.069273 GGGAATGTGAACTCGACAGTG 58.931 52.381 0.00 0.00 31.06 3.66
4135 4197 2.069273 GGAATGTGAACTCGACAGTGG 58.931 52.381 0.00 0.00 31.06 4.00
4136 4198 1.461127 GAATGTGAACTCGACAGTGGC 59.539 52.381 0.00 0.00 31.06 5.01
4137 4199 0.392706 ATGTGAACTCGACAGTGGCA 59.607 50.000 0.00 0.00 31.06 4.92
4138 4200 0.392706 TGTGAACTCGACAGTGGCAT 59.607 50.000 0.00 0.00 31.06 4.40
4139 4201 1.202639 TGTGAACTCGACAGTGGCATT 60.203 47.619 0.00 0.00 31.06 3.56
4140 4202 1.873591 GTGAACTCGACAGTGGCATTT 59.126 47.619 0.00 0.00 31.06 2.32
4141 4203 1.872952 TGAACTCGACAGTGGCATTTG 59.127 47.619 0.00 0.00 31.06 2.32
4142 4204 1.197721 GAACTCGACAGTGGCATTTGG 59.802 52.381 0.00 0.00 31.06 3.28
4143 4205 0.396435 ACTCGACAGTGGCATTTGGA 59.604 50.000 0.00 0.00 0.00 3.53
4144 4206 1.003580 ACTCGACAGTGGCATTTGGAT 59.996 47.619 0.00 0.00 0.00 3.41
4145 4207 1.399440 CTCGACAGTGGCATTTGGATG 59.601 52.381 0.00 0.00 36.32 3.51
4181 4243 9.197694 GTATCATAGATCAACTTAAACTGCGAT 57.802 33.333 0.00 0.00 0.00 4.58
4194 4256 9.109393 ACTTAAACTGCGATGTAATGATGTTAT 57.891 29.630 0.00 0.00 0.00 1.89
4201 4263 8.017587 TGCGATGTAATGATGTTATGACATAC 57.982 34.615 2.64 0.00 46.27 2.39
4266 4331 4.370364 ACATTTTGTGGGCGAATATCAC 57.630 40.909 0.00 0.00 0.00 3.06
4267 4332 3.181501 ACATTTTGTGGGCGAATATCACG 60.182 43.478 0.00 0.00 34.43 4.35
4275 4340 2.004017 GGCGAATATCACGTGAAACCA 58.996 47.619 24.13 8.62 0.00 3.67
4279 4344 3.430556 CGAATATCACGTGAAACCACACA 59.569 43.478 24.13 0.00 40.34 3.72
4302 4367 5.546621 TTAGGTTCTACCATGCTACCATC 57.453 43.478 0.00 0.00 41.95 3.51
4334 4399 9.529325 GTAGCACTTCTAAAAGGTTTTGAAAAT 57.471 29.630 0.00 0.00 36.78 1.82
4335 4400 8.648557 AGCACTTCTAAAAGGTTTTGAAAATC 57.351 30.769 0.00 0.00 36.78 2.17
4352 4417 7.935338 TGAAAATCTCTGATTTTCTTTGTGC 57.065 32.000 29.55 14.40 44.19 4.57
4357 4422 5.692814 TCTCTGATTTTCTTTGTGCGAATG 58.307 37.500 0.00 0.00 0.00 2.67
4358 4423 5.239306 TCTCTGATTTTCTTTGTGCGAATGT 59.761 36.000 0.00 0.00 0.00 2.71
4363 4428 4.362932 TTTCTTTGTGCGAATGTTGACA 57.637 36.364 0.00 0.00 0.00 3.58
4364 4429 4.566545 TTCTTTGTGCGAATGTTGACAT 57.433 36.364 0.00 0.00 38.41 3.06
4365 4430 3.887741 TCTTTGTGCGAATGTTGACATG 58.112 40.909 0.00 0.00 36.56 3.21
4398 4463 9.695884 GTCTACAATCAAAGAGAATTTCGAATC 57.304 33.333 0.00 0.00 0.00 2.52
4400 4465 7.452880 ACAATCAAAGAGAATTTCGAATCCA 57.547 32.000 0.00 0.00 0.00 3.41
4401 4466 8.059798 ACAATCAAAGAGAATTTCGAATCCAT 57.940 30.769 0.00 0.00 0.00 3.41
4464 4547 7.047891 TGTAGACACTATTCACATTTGGATCC 58.952 38.462 4.20 4.20 0.00 3.36
4465 4548 5.440610 AGACACTATTCACATTTGGATCCC 58.559 41.667 9.90 0.00 0.00 3.85
4466 4549 5.044919 AGACACTATTCACATTTGGATCCCA 60.045 40.000 9.90 0.00 0.00 4.37
4468 4551 5.418840 ACACTATTCACATTTGGATCCCAAC 59.581 40.000 9.90 0.00 43.82 3.77
4469 4552 5.418524 CACTATTCACATTTGGATCCCAACA 59.581 40.000 9.90 0.00 43.82 3.33
4482 5823 6.498538 TGGATCCCAACATTTAATTAGGTGT 58.501 36.000 9.90 0.46 0.00 4.16
4483 5824 6.957020 TGGATCCCAACATTTAATTAGGTGTT 59.043 34.615 9.90 10.18 35.34 3.32
4484 5825 7.093552 TGGATCCCAACATTTAATTAGGTGTTG 60.094 37.037 24.13 24.13 46.66 3.33
4490 5831 9.751542 CCAACATTTAATTAGGTGTTGTGTTTA 57.248 29.630 26.37 0.00 46.03 2.01
4521 5862 2.288579 TGACGTCTATGTTCTGCGGTTT 60.289 45.455 17.92 0.00 0.00 3.27
4542 5883 4.554960 TGGGTAAACCACACGATGATAA 57.445 40.909 0.81 0.00 46.80 1.75
4543 5884 4.509616 TGGGTAAACCACACGATGATAAG 58.490 43.478 0.81 0.00 46.80 1.73
4544 5885 4.223255 TGGGTAAACCACACGATGATAAGA 59.777 41.667 0.81 0.00 46.80 2.10
4545 5886 4.569564 GGGTAAACCACACGATGATAAGAC 59.430 45.833 0.81 0.00 39.85 3.01
4547 5888 5.873164 GGTAAACCACACGATGATAAGACTT 59.127 40.000 0.00 0.00 35.64 3.01
4548 5889 5.862924 AAACCACACGATGATAAGACTTG 57.137 39.130 0.00 0.00 0.00 3.16
4549 5890 4.537135 ACCACACGATGATAAGACTTGT 57.463 40.909 0.00 0.00 0.00 3.16
4550 5891 4.894784 ACCACACGATGATAAGACTTGTT 58.105 39.130 0.00 0.00 0.00 2.83
4551 5892 5.305585 ACCACACGATGATAAGACTTGTTT 58.694 37.500 0.00 0.00 0.00 2.83
4552 5893 5.763204 ACCACACGATGATAAGACTTGTTTT 59.237 36.000 0.00 0.00 0.00 2.43
4553 5894 6.073222 ACCACACGATGATAAGACTTGTTTTC 60.073 38.462 0.00 0.00 0.00 2.29
4554 5895 6.147821 CCACACGATGATAAGACTTGTTTTCT 59.852 38.462 0.00 0.00 0.00 2.52
4580 5921 7.510001 TGGAGGCAATATAAAATGGTCATGATT 59.490 33.333 0.00 0.00 0.00 2.57
4594 5935 5.163764 TGGTCATGATTAAGTCAAATCACGC 60.164 40.000 0.00 0.00 45.90 5.34
4622 5965 0.106819 TAGGGAGGTGACGGCTACTC 60.107 60.000 4.44 4.44 0.00 2.59
4641 6015 5.288543 ACTCTTGAGCATTTGAAATCGTC 57.711 39.130 0.00 0.00 0.00 4.20
4642 6016 4.756642 ACTCTTGAGCATTTGAAATCGTCA 59.243 37.500 0.00 0.00 0.00 4.35
4643 6017 5.034554 TCTTGAGCATTTGAAATCGTCAC 57.965 39.130 0.00 0.00 35.39 3.67
4653 6027 7.690637 GCATTTGAAATCGTCACGTAATAAGAA 59.309 33.333 0.00 0.00 35.39 2.52
4667 6041 8.321716 CACGTAATAAGAAGAAATCTTTCTCGG 58.678 37.037 5.69 0.00 46.39 4.63
4668 6042 7.010275 ACGTAATAAGAAGAAATCTTTCTCGGC 59.990 37.037 5.69 0.28 46.39 5.54
4678 6052 3.565764 TCTTTCTCGGCATCAATCCAT 57.434 42.857 0.00 0.00 0.00 3.41
4680 6054 3.628942 TCTTTCTCGGCATCAATCCATTG 59.371 43.478 0.00 0.00 39.10 2.82
4681 6055 1.311859 TCTCGGCATCAATCCATTGC 58.688 50.000 0.00 0.00 37.68 3.56
4695 6069 1.483415 CCATTGCCCCCTCATTCTTTG 59.517 52.381 0.00 0.00 0.00 2.77
4696 6070 2.459644 CATTGCCCCCTCATTCTTTGA 58.540 47.619 0.00 0.00 0.00 2.69
4709 6083 0.532573 TCTTTGAGAGCCTGCTACGG 59.467 55.000 0.00 0.00 0.00 4.02
4732 6106 1.019805 GTTGACCTTGGAGCTACGCC 61.020 60.000 0.00 0.00 0.00 5.68
4733 6107 2.202756 GACCTTGGAGCTACGCCG 60.203 66.667 0.00 0.00 0.00 6.46
4734 6108 2.995574 ACCTTGGAGCTACGCCGT 60.996 61.111 0.00 0.00 0.00 5.68
4735 6109 2.264794 CCTTGGAGCTACGCCGTT 59.735 61.111 0.00 0.00 0.00 4.44
4736 6110 1.375523 CCTTGGAGCTACGCCGTTT 60.376 57.895 0.00 0.00 0.00 3.60
4737 6111 1.635663 CCTTGGAGCTACGCCGTTTG 61.636 60.000 0.00 0.00 0.00 2.93
4738 6112 0.949105 CTTGGAGCTACGCCGTTTGT 60.949 55.000 0.00 0.00 0.00 2.83
4739 6113 0.317799 TTGGAGCTACGCCGTTTGTA 59.682 50.000 0.00 0.00 0.00 2.41
4743 6117 3.189285 GGAGCTACGCCGTTTGTATTTA 58.811 45.455 0.00 0.00 0.00 1.40
4757 6137 9.902196 CCGTTTGTATTTAGTGTAAATTTCCTT 57.098 29.630 0.00 0.00 39.06 3.36
4875 6255 0.315951 ATATGTCGTCGTCGCAGTCG 60.316 55.000 0.00 0.00 41.01 4.18
5105 6499 2.750657 GGGGTGATGGAGGGAGCAG 61.751 68.421 0.00 0.00 0.00 4.24
5123 6517 4.827087 CCATGCTCGTGCCGCTCT 62.827 66.667 7.05 0.00 38.71 4.09
5204 6598 2.746279 TTTCCTGCACCCTTTCTTGA 57.254 45.000 0.00 0.00 0.00 3.02
5205 6599 2.978156 TTCCTGCACCCTTTCTTGAT 57.022 45.000 0.00 0.00 0.00 2.57
5206 6600 4.380843 TTTCCTGCACCCTTTCTTGATA 57.619 40.909 0.00 0.00 0.00 2.15
5207 6601 4.591321 TTCCTGCACCCTTTCTTGATAT 57.409 40.909 0.00 0.00 0.00 1.63
5208 6602 4.156455 TCCTGCACCCTTTCTTGATATC 57.844 45.455 0.00 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.641094 TCGGTACTGAGAAATTCTCCTCTC 59.359 45.833 19.16 8.25 42.73 3.20
8 9 4.399934 GTCGGTACTGAGAAATTCTCCTCT 59.600 45.833 19.16 5.21 42.73 3.69
49 50 4.621274 CGGTAACTTGGGGTCGAAATTAGA 60.621 45.833 0.00 0.00 0.00 2.10
101 102 4.642429 ACACGGAAGAAATACAAGCTCTT 58.358 39.130 0.00 0.00 32.11 2.85
109 110 7.331193 ACTTAGATTGTGACACGGAAGAAATAC 59.669 37.037 0.22 0.00 0.00 1.89
120 121 5.050091 CACTGGACAACTTAGATTGTGACAC 60.050 44.000 0.00 0.00 42.89 3.67
123 124 4.065088 GCACTGGACAACTTAGATTGTGA 58.935 43.478 5.26 0.00 42.89 3.58
131 132 3.814625 TGTCAATGCACTGGACAACTTA 58.185 40.909 12.85 0.00 38.50 2.24
139 140 4.713824 AAAGATCATGTCAATGCACTGG 57.286 40.909 0.00 0.00 33.47 4.00
146 147 7.915508 TCGCGTTAATTAAAGATCATGTCAAT 58.084 30.769 14.33 0.00 0.00 2.57
151 152 9.864034 AAACTATCGCGTTAATTAAAGATCATG 57.136 29.630 14.33 9.10 0.00 3.07
202 203 4.062991 ACTCGAAGACCATGTAAACCAAC 58.937 43.478 0.00 0.00 0.00 3.77
203 204 4.345859 ACTCGAAGACCATGTAAACCAA 57.654 40.909 0.00 0.00 0.00 3.67
205 206 3.683340 GGAACTCGAAGACCATGTAAACC 59.317 47.826 0.00 0.00 0.00 3.27
206 207 3.683340 GGGAACTCGAAGACCATGTAAAC 59.317 47.826 0.00 0.00 0.00 2.01
207 208 3.581332 AGGGAACTCGAAGACCATGTAAA 59.419 43.478 0.00 0.00 32.90 2.01
208 209 3.170717 AGGGAACTCGAAGACCATGTAA 58.829 45.455 0.00 0.00 32.90 2.41
251 273 8.848474 TTTTGTTTATGAAAAGGGTTGAAACA 57.152 26.923 0.00 0.00 34.48 2.83
252 274 9.157104 TCTTTTGTTTATGAAAAGGGTTGAAAC 57.843 29.630 0.00 0.00 39.75 2.78
253 275 9.898152 ATCTTTTGTTTATGAAAAGGGTTGAAA 57.102 25.926 0.00 0.00 39.75 2.69
294 316 4.647853 ACTAGCACGGTCCATTGTAGAATA 59.352 41.667 0.00 0.00 0.00 1.75
295 317 3.451178 ACTAGCACGGTCCATTGTAGAAT 59.549 43.478 0.00 0.00 0.00 2.40
301 323 2.671396 GTGTTACTAGCACGGTCCATTG 59.329 50.000 0.00 0.00 0.00 2.82
302 324 2.968675 GTGTTACTAGCACGGTCCATT 58.031 47.619 0.00 0.00 0.00 3.16
303 325 2.667473 GTGTTACTAGCACGGTCCAT 57.333 50.000 0.00 0.00 0.00 3.41
310 332 4.296690 AGTCTTGTTCGTGTTACTAGCAC 58.703 43.478 0.00 0.00 0.00 4.40
397 419 9.809096 CTACTCTGCTTCTTGAATGTATCTTTA 57.191 33.333 0.00 0.00 0.00 1.85
401 423 7.434897 CACTCTACTCTGCTTCTTGAATGTATC 59.565 40.741 0.00 0.00 0.00 2.24
411 433 2.524306 AGTGCACTCTACTCTGCTTCT 58.476 47.619 15.25 0.00 34.29 2.85
423 445 4.494484 AGAACCAAAACAAAAGTGCACTC 58.506 39.130 21.95 2.57 0.00 3.51
487 512 7.027778 AGGCGAACCATTTTAGCTAATTTAG 57.972 36.000 7.08 0.00 39.06 1.85
492 517 6.823497 ACTATAGGCGAACCATTTTAGCTAA 58.177 36.000 0.86 0.86 39.06 3.09
494 519 5.291905 ACTATAGGCGAACCATTTTAGCT 57.708 39.130 4.43 0.00 39.06 3.32
495 520 6.649557 ACATACTATAGGCGAACCATTTTAGC 59.350 38.462 4.43 0.00 39.06 3.09
497 522 7.502696 ACACATACTATAGGCGAACCATTTTA 58.497 34.615 4.43 0.00 39.06 1.52
498 523 6.354130 ACACATACTATAGGCGAACCATTTT 58.646 36.000 4.43 0.00 39.06 1.82
502 527 3.319972 GGACACATACTATAGGCGAACCA 59.680 47.826 4.43 0.00 39.06 3.67
503 528 3.573110 AGGACACATACTATAGGCGAACC 59.427 47.826 4.43 0.00 0.00 3.62
505 530 5.829391 TGTTAGGACACATACTATAGGCGAA 59.171 40.000 4.43 0.00 0.00 4.70
508 533 9.420551 GTTAATGTTAGGACACATACTATAGGC 57.579 37.037 4.43 0.00 38.91 3.93
512 537 8.241497 TCGGTTAATGTTAGGACACATACTAT 57.759 34.615 0.00 0.00 38.91 2.12
524 549 6.971527 TGTGTACCATTCGGTTAATGTTAG 57.028 37.500 0.00 0.00 46.31 2.34
613 648 9.582648 ACCCTTACAGTTTACAAAAACATAGAT 57.417 29.630 4.04 0.00 46.18 1.98
664 699 9.661563 TCTCACGAAAACATATTAAATGGTAGT 57.338 29.630 0.00 0.00 0.00 2.73
667 702 8.786826 TCTCTCACGAAAACATATTAAATGGT 57.213 30.769 0.00 0.00 0.00 3.55
712 747 1.482593 AGACAGAAGGCACCCTTATCG 59.517 52.381 0.00 0.00 44.82 2.92
721 756 9.920946 ATTTATAAGGAATAAAGACAGAAGGCA 57.079 29.630 0.00 0.00 42.03 4.75
726 761 9.131791 GGCCAATTTATAAGGAATAAAGACAGA 57.868 33.333 0.00 0.00 42.03 3.41
727 762 9.136323 AGGCCAATTTATAAGGAATAAAGACAG 57.864 33.333 5.01 0.00 42.03 3.51
733 769 9.945633 ACCTTAAGGCCAATTTATAAGGAATAA 57.054 29.630 21.92 0.00 43.37 1.40
763 799 5.449588 GGTTTGTTATATCAGACGAGGTCGA 60.450 44.000 6.35 0.00 43.02 4.20
771 807 6.817140 AGGACTTTCGGTTTGTTATATCAGAC 59.183 38.462 0.00 0.00 0.00 3.51
773 809 7.762615 TGTAGGACTTTCGGTTTGTTATATCAG 59.237 37.037 0.00 0.00 0.00 2.90
781 817 8.316214 TCTTATATTGTAGGACTTTCGGTTTGT 58.684 33.333 0.00 0.00 0.00 2.83
782 818 8.601476 GTCTTATATTGTAGGACTTTCGGTTTG 58.399 37.037 0.00 0.00 0.00 2.93
783 819 7.767659 GGTCTTATATTGTAGGACTTTCGGTTT 59.232 37.037 3.37 0.00 0.00 3.27
786 822 7.052142 AGGTCTTATATTGTAGGACTTTCGG 57.948 40.000 3.37 0.00 0.00 4.30
788 824 7.290481 AGGGAGGTCTTATATTGTAGGACTTTC 59.710 40.741 3.37 0.00 0.00 2.62
812 850 3.872459 AGCCCATCTTAAGATCCAAGG 57.128 47.619 15.24 12.83 31.21 3.61
813 851 7.453393 TGTATAAGCCCATCTTAAGATCCAAG 58.547 38.462 15.24 4.42 40.38 3.61
846 885 4.137543 CCTCTATTGAATAGGTGGTTGCC 58.862 47.826 11.94 0.00 33.64 4.52
852 891 6.098982 AGGTGAGTTCCTCTATTGAATAGGTG 59.901 42.308 11.94 5.92 31.32 4.00
874 913 3.535561 CGGCATCTTTTCACTCATAGGT 58.464 45.455 0.00 0.00 0.00 3.08
878 917 2.119801 AGCGGCATCTTTTCACTCAT 57.880 45.000 1.45 0.00 0.00 2.90
884 923 4.875544 TGTATTGTAGCGGCATCTTTTC 57.124 40.909 1.45 0.00 0.00 2.29
911 950 6.936900 GCCAAGCCAGAAGAGAATATAATACA 59.063 38.462 0.00 0.00 0.00 2.29
912 951 7.371126 GCCAAGCCAGAAGAGAATATAATAC 57.629 40.000 0.00 0.00 0.00 1.89
931 970 1.472026 GGCATTTGTGCTATGGCCAAG 60.472 52.381 10.96 10.17 41.29 3.61
951 994 3.116079 AGCCAATTTTGCAAAGACTGG 57.884 42.857 22.51 22.51 0.00 4.00
952 995 6.601741 TTTAAGCCAATTTTGCAAAGACTG 57.398 33.333 12.41 10.48 0.00 3.51
996 1040 2.231716 ACAATCCCTAAGGTTTGGCC 57.768 50.000 0.00 0.00 44.17 5.36
997 1041 4.617253 AAAACAATCCCTAAGGTTTGGC 57.383 40.909 6.21 0.00 44.17 4.52
1022 1066 6.093357 GTGAAAAATTGGGTCTCAAGCAAAAA 59.907 34.615 0.00 0.00 38.95 1.94
1023 1067 5.584251 GTGAAAAATTGGGTCTCAAGCAAAA 59.416 36.000 0.00 0.00 38.95 2.44
1024 1068 5.115480 GTGAAAAATTGGGTCTCAAGCAAA 58.885 37.500 0.00 0.00 38.95 3.68
1025 1069 4.161189 TGTGAAAAATTGGGTCTCAAGCAA 59.839 37.500 0.00 0.00 38.95 3.91
1026 1070 3.703556 TGTGAAAAATTGGGTCTCAAGCA 59.296 39.130 0.00 0.00 38.95 3.91
1027 1071 4.320608 TGTGAAAAATTGGGTCTCAAGC 57.679 40.909 0.00 0.00 38.95 4.01
1097 1141 8.579850 ACAAGGCAAATAATGTGAAAGAGATA 57.420 30.769 0.00 0.00 0.00 1.98
1098 1142 7.472334 ACAAGGCAAATAATGTGAAAGAGAT 57.528 32.000 0.00 0.00 0.00 2.75
1099 1143 6.899393 ACAAGGCAAATAATGTGAAAGAGA 57.101 33.333 0.00 0.00 0.00 3.10
1100 1144 7.327761 CAGAACAAGGCAAATAATGTGAAAGAG 59.672 37.037 0.00 0.00 0.00 2.85
1101 1145 7.147312 CAGAACAAGGCAAATAATGTGAAAGA 58.853 34.615 0.00 0.00 0.00 2.52
1102 1146 6.366877 CCAGAACAAGGCAAATAATGTGAAAG 59.633 38.462 0.00 0.00 0.00 2.62
1107 1151 5.047802 CACTCCAGAACAAGGCAAATAATGT 60.048 40.000 0.00 0.00 0.00 2.71
1108 1152 5.404946 CACTCCAGAACAAGGCAAATAATG 58.595 41.667 0.00 0.00 0.00 1.90
1121 1165 2.680339 GCATAAGAAGCCACTCCAGAAC 59.320 50.000 0.00 0.00 0.00 3.01
1124 1168 2.706339 AGCATAAGAAGCCACTCCAG 57.294 50.000 0.00 0.00 0.00 3.86
1126 1170 3.828875 AGTAGCATAAGAAGCCACTCC 57.171 47.619 0.00 0.00 27.60 3.85
1131 1175 8.664211 AAACAAGTATAGTAGCATAAGAAGCC 57.336 34.615 0.00 0.00 0.00 4.35
1132 1176 9.535878 AGAAACAAGTATAGTAGCATAAGAAGC 57.464 33.333 0.00 0.00 0.00 3.86
1142 1186 8.368668 CCCCATCCTTAGAAACAAGTATAGTAG 58.631 40.741 0.00 0.00 0.00 2.57
1153 1197 1.005450 TGCACCCCCATCCTTAGAAAC 59.995 52.381 0.00 0.00 0.00 2.78
1158 1202 0.625980 TCCATGCACCCCCATCCTTA 60.626 55.000 0.00 0.00 0.00 2.69
1160 1204 1.702491 ATCCATGCACCCCCATCCT 60.702 57.895 0.00 0.00 0.00 3.24
1164 1208 3.428664 GGGATCCATGCACCCCCA 61.429 66.667 15.23 0.00 37.85 4.96
1179 1231 3.275143 TGTACGCCATAACAATTGAGGG 58.725 45.455 13.59 2.68 0.00 4.30
1188 1240 1.663695 AGTGCCATGTACGCCATAAC 58.336 50.000 0.00 0.00 30.71 1.89
1195 1247 2.098298 GCGCAAGTGCCATGTACG 59.902 61.111 0.30 0.00 41.68 3.67
1216 1268 1.314534 TTTCCCATGCGCCATGTCTG 61.315 55.000 4.18 0.60 39.94 3.51
1219 1271 2.053865 CCTTTCCCATGCGCCATGT 61.054 57.895 4.18 0.00 39.94 3.21
1220 1272 1.731433 CTCCTTTCCCATGCGCCATG 61.731 60.000 4.18 8.91 41.10 3.66
1221 1273 1.454479 CTCCTTTCCCATGCGCCAT 60.454 57.895 4.18 0.00 0.00 4.40
1222 1274 1.925285 ATCTCCTTTCCCATGCGCCA 61.925 55.000 4.18 0.00 0.00 5.69
1223 1275 1.152881 ATCTCCTTTCCCATGCGCC 60.153 57.895 4.18 0.00 0.00 6.53
1224 1276 2.028130 CATCTCCTTTCCCATGCGC 58.972 57.895 0.00 0.00 0.00 6.09
1234 1286 6.820656 CAGTAGTTATTGTGAAGCATCTCCTT 59.179 38.462 0.00 0.00 0.00 3.36
1235 1287 6.344500 CAGTAGTTATTGTGAAGCATCTCCT 58.656 40.000 0.00 0.00 0.00 3.69
1248 1300 3.518590 GGGTGACGACCAGTAGTTATTG 58.481 50.000 0.00 0.00 45.25 1.90
1257 1309 0.739813 GATTTCGGGGTGACGACCAG 60.740 60.000 0.00 0.00 45.25 4.00
1264 1316 4.076394 CCAACTTTAAGATTTCGGGGTGA 58.924 43.478 0.00 0.00 0.00 4.02
1268 1320 3.254657 TGCACCAACTTTAAGATTTCGGG 59.745 43.478 0.00 0.00 0.00 5.14
1270 1322 7.305474 ACTATTGCACCAACTTTAAGATTTCG 58.695 34.615 0.00 0.00 0.00 3.46
1272 1324 9.515226 TCTACTATTGCACCAACTTTAAGATTT 57.485 29.630 0.00 0.00 0.00 2.17
1336 1388 1.735973 GAATGGAAATGGGCGAGGC 59.264 57.895 0.00 0.00 0.00 4.70
1337 1389 1.109323 GGGAATGGAAATGGGCGAGG 61.109 60.000 0.00 0.00 0.00 4.63
1338 1390 1.109323 GGGGAATGGAAATGGGCGAG 61.109 60.000 0.00 0.00 0.00 5.03
1339 1391 1.076339 GGGGAATGGAAATGGGCGA 60.076 57.895 0.00 0.00 0.00 5.54
1340 1392 2.133641 GGGGGAATGGAAATGGGCG 61.134 63.158 0.00 0.00 0.00 6.13
1341 1393 2.133641 CGGGGGAATGGAAATGGGC 61.134 63.158 0.00 0.00 0.00 5.36
1342 1394 0.032615 TTCGGGGGAATGGAAATGGG 60.033 55.000 0.00 0.00 0.00 4.00
1343 1395 1.402787 CTTCGGGGGAATGGAAATGG 58.597 55.000 0.00 0.00 0.00 3.16
1344 1396 1.402787 CCTTCGGGGGAATGGAAATG 58.597 55.000 0.00 0.00 0.00 2.32
1345 1397 0.397114 GCCTTCGGGGGAATGGAAAT 60.397 55.000 0.00 0.00 35.16 2.17
1346 1398 1.000145 GCCTTCGGGGGAATGGAAA 60.000 57.895 0.00 0.00 35.16 3.13
1347 1399 1.921869 GAGCCTTCGGGGGAATGGAA 61.922 60.000 0.00 0.00 35.16 3.53
1348 1400 2.286121 AGCCTTCGGGGGAATGGA 60.286 61.111 0.00 0.00 35.16 3.41
1349 1401 2.193248 GAGCCTTCGGGGGAATGG 59.807 66.667 0.00 0.00 35.16 3.16
1350 1402 1.153086 CTGAGCCTTCGGGGGAATG 60.153 63.158 0.00 0.00 35.16 2.67
1351 1403 1.616628 ACTGAGCCTTCGGGGGAAT 60.617 57.895 0.00 0.00 33.77 3.01
1352 1404 2.203938 ACTGAGCCTTCGGGGGAA 60.204 61.111 0.00 0.00 33.77 3.97
1353 1405 2.683933 GACTGAGCCTTCGGGGGA 60.684 66.667 0.00 0.00 33.77 4.81
1354 1406 4.148825 CGACTGAGCCTTCGGGGG 62.149 72.222 0.00 0.00 33.77 5.40
1355 1407 3.358076 GACGACTGAGCCTTCGGGG 62.358 68.421 0.00 0.00 39.63 5.73
1356 1408 2.154798 TTGACGACTGAGCCTTCGGG 62.155 60.000 0.00 0.00 39.63 5.14
1357 1409 0.319555 TTTGACGACTGAGCCTTCGG 60.320 55.000 0.00 0.00 39.63 4.30
1358 1410 1.391485 CATTTGACGACTGAGCCTTCG 59.609 52.381 0.00 0.00 41.14 3.79
1359 1411 2.688507 TCATTTGACGACTGAGCCTTC 58.311 47.619 0.00 0.00 0.00 3.46
1360 1412 2.839486 TCATTTGACGACTGAGCCTT 57.161 45.000 0.00 0.00 0.00 4.35
1361 1413 2.839486 TTCATTTGACGACTGAGCCT 57.161 45.000 0.00 0.00 0.00 4.58
1362 1414 3.484229 CGATTTCATTTGACGACTGAGCC 60.484 47.826 0.00 0.00 0.00 4.70
1363 1415 3.367932 TCGATTTCATTTGACGACTGAGC 59.632 43.478 0.00 0.00 0.00 4.26
1364 1416 5.709011 ATCGATTTCATTTGACGACTGAG 57.291 39.130 0.00 0.00 35.91 3.35
1365 1417 7.544217 TCTTTATCGATTTCATTTGACGACTGA 59.456 33.333 1.71 0.00 35.91 3.41
1366 1418 7.675478 TCTTTATCGATTTCATTTGACGACTG 58.325 34.615 1.71 0.00 35.91 3.51
1367 1419 7.827819 TCTTTATCGATTTCATTTGACGACT 57.172 32.000 1.71 0.00 35.91 4.18
1368 1420 8.874745 TTTCTTTATCGATTTCATTTGACGAC 57.125 30.769 1.71 0.00 35.91 4.34
1369 1421 9.541724 CTTTTCTTTATCGATTTCATTTGACGA 57.458 29.630 1.71 0.00 37.39 4.20
1370 1422 8.788813 CCTTTTCTTTATCGATTTCATTTGACG 58.211 33.333 1.71 0.00 0.00 4.35
1371 1423 9.840427 TCCTTTTCTTTATCGATTTCATTTGAC 57.160 29.630 1.71 0.00 0.00 3.18
1376 1428 8.499162 CGCTATCCTTTTCTTTATCGATTTCAT 58.501 33.333 1.71 0.00 0.00 2.57
1377 1429 7.709182 TCGCTATCCTTTTCTTTATCGATTTCA 59.291 33.333 1.71 0.00 0.00 2.69
1378 1430 8.073355 TCGCTATCCTTTTCTTTATCGATTTC 57.927 34.615 1.71 0.00 0.00 2.17
1379 1431 8.499162 CATCGCTATCCTTTTCTTTATCGATTT 58.501 33.333 1.71 0.00 31.70 2.17
1380 1432 7.360438 GCATCGCTATCCTTTTCTTTATCGATT 60.360 37.037 1.71 0.00 31.70 3.34
1381 1433 6.091441 GCATCGCTATCCTTTTCTTTATCGAT 59.909 38.462 2.16 2.16 33.92 3.59
1382 1434 5.405571 GCATCGCTATCCTTTTCTTTATCGA 59.594 40.000 0.00 0.00 0.00 3.59
1383 1435 5.177511 TGCATCGCTATCCTTTTCTTTATCG 59.822 40.000 0.00 0.00 0.00 2.92
1384 1436 6.545504 TGCATCGCTATCCTTTTCTTTATC 57.454 37.500 0.00 0.00 0.00 1.75
1385 1437 6.511767 CGTTGCATCGCTATCCTTTTCTTTAT 60.512 38.462 3.94 0.00 0.00 1.40
1386 1438 5.220586 CGTTGCATCGCTATCCTTTTCTTTA 60.221 40.000 3.94 0.00 0.00 1.85
1387 1439 4.437390 CGTTGCATCGCTATCCTTTTCTTT 60.437 41.667 3.94 0.00 0.00 2.52
1388 1440 3.063997 CGTTGCATCGCTATCCTTTTCTT 59.936 43.478 3.94 0.00 0.00 2.52
1389 1441 2.609459 CGTTGCATCGCTATCCTTTTCT 59.391 45.455 3.94 0.00 0.00 2.52
1390 1442 2.286418 CCGTTGCATCGCTATCCTTTTC 60.286 50.000 11.68 0.00 0.00 2.29
1391 1443 1.670811 CCGTTGCATCGCTATCCTTTT 59.329 47.619 11.68 0.00 0.00 2.27
1392 1444 1.299541 CCGTTGCATCGCTATCCTTT 58.700 50.000 11.68 0.00 0.00 3.11
1393 1445 1.160329 GCCGTTGCATCGCTATCCTT 61.160 55.000 11.68 0.00 37.47 3.36
1394 1446 1.595382 GCCGTTGCATCGCTATCCT 60.595 57.895 11.68 0.00 37.47 3.24
1395 1447 1.560860 GAGCCGTTGCATCGCTATCC 61.561 60.000 11.68 0.00 41.13 2.59
1396 1448 0.598680 AGAGCCGTTGCATCGCTATC 60.599 55.000 11.68 8.60 41.13 2.08
1397 1449 0.598680 GAGAGCCGTTGCATCGCTAT 60.599 55.000 11.68 9.53 41.13 2.97
1398 1450 1.226974 GAGAGCCGTTGCATCGCTA 60.227 57.895 11.68 0.00 41.13 4.26
1588 1640 4.400961 GCAGCCTTCTGGGAGCGT 62.401 66.667 0.00 0.00 40.65 5.07
2177 2229 0.317160 TCGCTGTTGTCACGATCCTT 59.683 50.000 0.00 0.00 0.00 3.36
2339 2391 0.452987 CGTCCGACGTAAATCCAGGA 59.547 55.000 12.91 0.00 36.74 3.86
2633 2688 3.745546 CCCATCTGAGGAAGGGCA 58.254 61.111 0.00 0.00 42.56 5.36
3640 3701 0.037303 ACCACCACATGCCTCTTCAG 59.963 55.000 0.00 0.00 0.00 3.02
3652 3713 4.846779 ATTGTACAAACATGACCACCAC 57.153 40.909 13.23 0.00 34.97 4.16
3654 3715 5.240623 TCTCAATTGTACAAACATGACCACC 59.759 40.000 13.23 0.00 34.97 4.61
3669 3730 6.939163 GCATTCCCATACTCTATCTCAATTGT 59.061 38.462 5.13 0.00 0.00 2.71
3670 3731 6.373774 GGCATTCCCATACTCTATCTCAATTG 59.626 42.308 0.00 0.00 0.00 2.32
3673 3734 5.489792 GGCATTCCCATACTCTATCTCAA 57.510 43.478 0.00 0.00 0.00 3.02
3696 3757 3.950794 TTTGCCTAGCTGTCCGGCG 62.951 63.158 0.00 0.00 46.67 6.46
3698 3759 2.109126 GCTTTGCCTAGCTGTCCGG 61.109 63.158 0.00 0.00 38.15 5.14
3699 3760 3.490890 GCTTTGCCTAGCTGTCCG 58.509 61.111 0.00 0.00 38.15 4.79
3728 3789 4.637483 AGCACCGACCAAAATCAATATG 57.363 40.909 0.00 0.00 0.00 1.78
3730 3791 6.767524 ATAAAGCACCGACCAAAATCAATA 57.232 33.333 0.00 0.00 0.00 1.90
3733 3794 9.214957 CTATATATAAAGCACCGACCAAAATCA 57.785 33.333 0.00 0.00 0.00 2.57
3735 3796 9.436957 CTCTATATATAAAGCACCGACCAAAAT 57.563 33.333 0.00 0.00 0.00 1.82
3738 3799 6.395629 GCTCTATATATAAAGCACCGACCAA 58.604 40.000 12.34 0.00 34.86 3.67
3743 3804 4.360563 CCCGCTCTATATATAAAGCACCG 58.639 47.826 16.42 4.85 34.39 4.94
3766 3827 3.935828 ACTCTCTCAAAATAGGCTTTCGC 59.064 43.478 0.00 0.00 0.00 4.70
3767 3828 6.487689 AAACTCTCTCAAAATAGGCTTTCG 57.512 37.500 0.00 0.00 0.00 3.46
3774 3835 9.712305 TTCCTAGACAAAACTCTCTCAAAATAG 57.288 33.333 0.00 0.00 0.00 1.73
3781 3842 6.128418 GCATGTTTCCTAGACAAAACTCTCTC 60.128 42.308 13.14 0.00 36.54 3.20
3794 3855 4.439289 GCCTAAGCTTTGCATGTTTCCTAG 60.439 45.833 3.20 0.00 35.50 3.02
3795 3856 3.443681 GCCTAAGCTTTGCATGTTTCCTA 59.556 43.478 3.20 0.00 35.50 2.94
3798 3859 3.302365 TGCCTAAGCTTTGCATGTTTC 57.698 42.857 16.67 0.00 40.80 2.78
3804 3865 2.965805 AGCATGCCTAAGCTTTGCA 58.034 47.368 21.14 21.14 45.52 4.08
3814 3875 2.289819 CCAATTCCAAACAAGCATGCCT 60.290 45.455 15.66 0.00 0.00 4.75
3823 3884 2.392662 TCACCTTGCCAATTCCAAACA 58.607 42.857 0.00 0.00 0.00 2.83
3833 3894 1.003580 GGAGAGAACATCACCTTGCCA 59.996 52.381 0.00 0.00 35.87 4.92
3835 3896 2.777832 AGGAGAGAACATCACCTTGC 57.222 50.000 0.00 0.00 45.83 4.01
3844 3905 3.574396 CGCCAATAGGATAGGAGAGAACA 59.426 47.826 0.00 0.00 36.89 3.18
3882 3943 3.635836 TCTCTATCTCCTGCACACATGAG 59.364 47.826 0.00 0.00 39.24 2.90
3883 3944 3.635591 TCTCTATCTCCTGCACACATGA 58.364 45.455 0.00 0.00 0.00 3.07
3890 3951 3.075134 TGCTAGGATCTCTATCTCCTGCA 59.925 47.826 1.38 6.51 41.96 4.41
3892 3953 5.125900 CACATGCTAGGATCTCTATCTCCTG 59.874 48.000 0.00 0.00 41.96 3.86
3895 3956 4.997565 GCACATGCTAGGATCTCTATCTC 58.002 47.826 0.00 0.00 38.21 2.75
3915 3977 1.428912 ACCAGGGAAATTCCTTCAGCA 59.571 47.619 12.28 0.00 36.57 4.41
3920 3982 3.833559 ATGTCACCAGGGAAATTCCTT 57.166 42.857 12.28 0.42 36.57 3.36
3922 3984 5.200483 TCAATATGTCACCAGGGAAATTCC 58.800 41.667 2.79 2.79 35.23 3.01
3923 3985 5.888161 ACTCAATATGTCACCAGGGAAATTC 59.112 40.000 0.00 0.00 0.00 2.17
3928 3990 3.055167 CACACTCAATATGTCACCAGGGA 60.055 47.826 0.00 0.00 0.00 4.20
3930 3992 3.055167 TCCACACTCAATATGTCACCAGG 60.055 47.826 0.00 0.00 0.00 4.45
3937 3999 3.054139 ACAGGCATCCACACTCAATATGT 60.054 43.478 0.00 0.00 0.00 2.29
3938 4000 3.548770 ACAGGCATCCACACTCAATATG 58.451 45.455 0.00 0.00 0.00 1.78
3940 4002 3.244875 ACAACAGGCATCCACACTCAATA 60.245 43.478 0.00 0.00 0.00 1.90
3942 4004 1.133823 ACAACAGGCATCCACACTCAA 60.134 47.619 0.00 0.00 0.00 3.02
3943 4005 0.473755 ACAACAGGCATCCACACTCA 59.526 50.000 0.00 0.00 0.00 3.41
3956 4018 1.535462 GGTCGGATTCCACAACAACAG 59.465 52.381 3.09 0.00 0.00 3.16
3957 4019 1.600023 GGTCGGATTCCACAACAACA 58.400 50.000 3.09 0.00 0.00 3.33
3958 4020 0.515564 CGGTCGGATTCCACAACAAC 59.484 55.000 3.09 0.00 0.00 3.32
3964 4026 2.884207 GACGCGGTCGGATTCCAC 60.884 66.667 12.47 0.47 40.69 4.02
3970 4032 4.034258 GTCACTGACGCGGTCGGA 62.034 66.667 19.70 5.31 41.05 4.55
3976 4038 2.264109 ATTGTCTAGTCACTGACGCG 57.736 50.000 3.53 3.53 37.67 6.01
3977 4039 3.839293 AGAATTGTCTAGTCACTGACGC 58.161 45.455 3.46 0.00 37.67 5.19
3978 4040 5.920840 TCAAAGAATTGTCTAGTCACTGACG 59.079 40.000 3.46 0.00 36.44 4.35
3979 4041 7.148641 TCTCAAAGAATTGTCTAGTCACTGAC 58.851 38.462 0.38 0.38 37.79 3.51
3980 4042 7.290110 TCTCAAAGAATTGTCTAGTCACTGA 57.710 36.000 0.00 0.00 37.79 3.41
3981 4043 7.816513 TGATCTCAAAGAATTGTCTAGTCACTG 59.183 37.037 0.00 0.00 37.79 3.66
3982 4044 7.816995 GTGATCTCAAAGAATTGTCTAGTCACT 59.183 37.037 0.00 0.00 37.79 3.41
3983 4045 7.064016 GGTGATCTCAAAGAATTGTCTAGTCAC 59.936 40.741 0.00 0.00 37.79 3.67
3984 4046 7.099764 GGTGATCTCAAAGAATTGTCTAGTCA 58.900 38.462 0.00 0.00 37.79 3.41
3985 4047 7.099764 TGGTGATCTCAAAGAATTGTCTAGTC 58.900 38.462 0.00 0.00 37.79 2.59
3986 4048 7.009179 TGGTGATCTCAAAGAATTGTCTAGT 57.991 36.000 0.00 0.00 37.79 2.57
3987 4049 7.042858 CGATGGTGATCTCAAAGAATTGTCTAG 60.043 40.741 0.00 0.00 37.79 2.43
3988 4050 6.758416 CGATGGTGATCTCAAAGAATTGTCTA 59.242 38.462 0.00 0.00 37.79 2.59
3989 4051 5.583854 CGATGGTGATCTCAAAGAATTGTCT 59.416 40.000 0.00 0.00 37.79 3.41
3990 4052 5.582269 TCGATGGTGATCTCAAAGAATTGTC 59.418 40.000 0.00 0.00 37.79 3.18
3991 4053 5.491070 TCGATGGTGATCTCAAAGAATTGT 58.509 37.500 0.00 0.00 37.79 2.71
3992 4054 5.814188 TCTCGATGGTGATCTCAAAGAATTG 59.186 40.000 0.00 0.00 37.92 2.32
3993 4055 5.982356 TCTCGATGGTGATCTCAAAGAATT 58.018 37.500 0.00 0.00 0.00 2.17
3994 4056 5.453057 CCTCTCGATGGTGATCTCAAAGAAT 60.453 44.000 0.00 0.00 0.00 2.40
3995 4057 4.142071 CCTCTCGATGGTGATCTCAAAGAA 60.142 45.833 0.00 0.00 0.00 2.52
3996 4058 3.382865 CCTCTCGATGGTGATCTCAAAGA 59.617 47.826 0.00 0.00 0.00 2.52
3997 4059 3.715495 CCTCTCGATGGTGATCTCAAAG 58.285 50.000 0.00 0.00 0.00 2.77
3998 4060 2.159043 GCCTCTCGATGGTGATCTCAAA 60.159 50.000 6.49 0.00 0.00 2.69
3999 4061 1.410517 GCCTCTCGATGGTGATCTCAA 59.589 52.381 6.49 0.00 0.00 3.02
4000 4062 1.035923 GCCTCTCGATGGTGATCTCA 58.964 55.000 6.49 0.00 0.00 3.27
4001 4063 1.035923 TGCCTCTCGATGGTGATCTC 58.964 55.000 6.49 0.00 0.00 2.75
4002 4064 0.749649 GTGCCTCTCGATGGTGATCT 59.250 55.000 6.49 0.00 0.00 2.75
4003 4065 0.596083 CGTGCCTCTCGATGGTGATC 60.596 60.000 6.49 0.00 0.00 2.92
4004 4066 1.439228 CGTGCCTCTCGATGGTGAT 59.561 57.895 6.49 0.00 0.00 3.06
4005 4067 2.710902 CCGTGCCTCTCGATGGTGA 61.711 63.158 6.49 0.00 0.00 4.02
4006 4068 1.663379 TACCGTGCCTCTCGATGGTG 61.663 60.000 6.49 0.00 0.00 4.17
4007 4069 0.755698 ATACCGTGCCTCTCGATGGT 60.756 55.000 6.49 0.00 0.00 3.55
4008 4070 0.389391 AATACCGTGCCTCTCGATGG 59.611 55.000 0.71 0.71 0.00 3.51
4009 4071 1.772182 GAATACCGTGCCTCTCGATG 58.228 55.000 0.00 0.00 0.00 3.84
4010 4072 0.311165 CGAATACCGTGCCTCTCGAT 59.689 55.000 0.00 0.00 0.00 3.59
4011 4073 0.745486 TCGAATACCGTGCCTCTCGA 60.745 55.000 0.00 0.00 39.75 4.04
4012 4074 0.311165 ATCGAATACCGTGCCTCTCG 59.689 55.000 0.00 0.00 39.75 4.04
4013 4075 2.510768 AATCGAATACCGTGCCTCTC 57.489 50.000 0.00 0.00 39.75 3.20
4014 4076 2.483188 GGAAATCGAATACCGTGCCTCT 60.483 50.000 0.00 0.00 39.75 3.69
4037 4099 5.797360 TCGTGGATTCGAAAATCTGGTAACA 60.797 40.000 0.00 0.00 40.99 2.41
4041 4103 3.262420 CTCGTGGATTCGAAAATCTGGT 58.738 45.455 0.00 0.00 40.99 4.00
4045 4107 2.280628 AGCCTCGTGGATTCGAAAATC 58.719 47.619 7.92 0.00 40.56 2.17
4053 4115 1.082117 CGCGTTTAGCCTCGTGGATT 61.082 55.000 7.92 0.00 44.76 3.01
4057 4119 1.443872 ACTCGCGTTTAGCCTCGTG 60.444 57.895 5.77 0.00 44.76 4.35
4069 4131 2.325761 AGCAACTAAGTTACACTCGCG 58.674 47.619 0.00 0.00 0.00 5.87
4073 4135 2.030540 TCGCGAGCAACTAAGTTACACT 60.031 45.455 3.71 0.00 0.00 3.55
4091 4153 2.256461 CAAAGTGGGCAAGCTCGC 59.744 61.111 0.00 0.00 0.00 5.03
4092 4154 2.256461 GCAAAGTGGGCAAGCTCG 59.744 61.111 0.00 0.00 0.00 5.03
4109 4171 0.790207 CGAGTTCACATTCCCACACG 59.210 55.000 0.00 0.00 0.00 4.49
4111 4173 1.414550 TGTCGAGTTCACATTCCCACA 59.585 47.619 0.00 0.00 0.00 4.17
4112 4174 2.069273 CTGTCGAGTTCACATTCCCAC 58.931 52.381 0.00 0.00 0.00 4.61
4145 4207 6.204301 AGTTGATCTATGATACATGCAAGTGC 59.796 38.462 4.51 0.00 42.50 4.40
4146 4208 7.725818 AGTTGATCTATGATACATGCAAGTG 57.274 36.000 4.51 0.00 0.00 3.16
4175 4237 6.529463 TGTCATAACATCATTACATCGCAG 57.471 37.500 0.00 0.00 0.00 5.18
4178 4240 8.447787 TCGTATGTCATAACATCATTACATCG 57.552 34.615 0.00 0.00 42.59 3.84
4249 4314 1.735018 CACGTGATATTCGCCCACAAA 59.265 47.619 10.90 0.00 0.00 2.83
4266 4331 3.813166 AGAACCTAATGTGTGGTTTCACG 59.187 43.478 0.00 0.00 45.48 4.35
4267 4332 5.180680 GGTAGAACCTAATGTGTGGTTTCAC 59.819 44.000 0.00 0.00 45.48 3.18
4275 4340 4.844349 AGCATGGTAGAACCTAATGTGT 57.156 40.909 0.00 0.00 39.58 3.72
4279 4344 5.846714 AGATGGTAGCATGGTAGAACCTAAT 59.153 40.000 13.10 3.17 39.58 1.73
4302 4367 5.491982 ACCTTTTAGAAGTGCTACCATGAG 58.508 41.667 0.00 0.00 0.00 2.90
4334 4399 5.239306 ACATTCGCACAAAGAAAATCAGAGA 59.761 36.000 0.00 0.00 0.00 3.10
4335 4400 5.455392 ACATTCGCACAAAGAAAATCAGAG 58.545 37.500 0.00 0.00 0.00 3.35
4344 4409 3.563390 TCATGTCAACATTCGCACAAAGA 59.437 39.130 0.00 0.00 33.61 2.52
4345 4410 3.887741 TCATGTCAACATTCGCACAAAG 58.112 40.909 0.00 0.00 33.61 2.77
4349 4414 6.891624 ACATATATCATGTCAACATTCGCAC 58.108 36.000 0.00 0.00 33.61 5.34
4350 4415 7.120789 GACATATATCATGTCAACATTCGCA 57.879 36.000 11.51 0.00 45.61 5.10
4428 4493 8.827677 GTGAATAGTGTCTACAACTTTGTCTTT 58.172 33.333 0.00 0.00 42.35 2.52
4429 4494 7.985184 TGTGAATAGTGTCTACAACTTTGTCTT 59.015 33.333 0.00 0.00 42.35 3.01
4482 5823 6.982141 AGACGTCAGTTGTATCTTAAACACAA 59.018 34.615 19.50 0.00 0.00 3.33
4483 5824 6.509656 AGACGTCAGTTGTATCTTAAACACA 58.490 36.000 19.50 0.00 0.00 3.72
4484 5825 8.584600 CATAGACGTCAGTTGTATCTTAAACAC 58.415 37.037 19.50 0.00 0.00 3.32
4490 5831 7.030165 CAGAACATAGACGTCAGTTGTATCTT 58.970 38.462 19.50 0.30 0.00 2.40
4497 5838 2.596452 CGCAGAACATAGACGTCAGTT 58.404 47.619 19.50 18.16 0.00 3.16
4499 5840 1.135373 ACCGCAGAACATAGACGTCAG 60.135 52.381 19.50 9.67 0.00 3.51
4500 5841 0.885879 ACCGCAGAACATAGACGTCA 59.114 50.000 19.50 4.13 0.00 4.35
4501 5842 1.992170 AACCGCAGAACATAGACGTC 58.008 50.000 7.70 7.70 0.00 4.34
4502 5843 2.066262 CAAACCGCAGAACATAGACGT 58.934 47.619 0.00 0.00 0.00 4.34
4503 5844 1.393539 CCAAACCGCAGAACATAGACG 59.606 52.381 0.00 0.00 0.00 4.18
4504 5845 1.737793 CCCAAACCGCAGAACATAGAC 59.262 52.381 0.00 0.00 0.00 2.59
4505 5846 1.349688 ACCCAAACCGCAGAACATAGA 59.650 47.619 0.00 0.00 0.00 1.98
4521 5862 4.223255 TCTTATCATCGTGTGGTTTACCCA 59.777 41.667 0.00 0.00 42.51 4.51
4532 5873 6.368791 TCCAGAAAACAAGTCTTATCATCGTG 59.631 38.462 0.00 0.00 0.00 4.35
4537 5878 5.003804 GCCTCCAGAAAACAAGTCTTATCA 58.996 41.667 0.00 0.00 0.00 2.15
4538 5879 5.003804 TGCCTCCAGAAAACAAGTCTTATC 58.996 41.667 0.00 0.00 0.00 1.75
4539 5880 4.985538 TGCCTCCAGAAAACAAGTCTTAT 58.014 39.130 0.00 0.00 0.00 1.73
4540 5881 4.431416 TGCCTCCAGAAAACAAGTCTTA 57.569 40.909 0.00 0.00 0.00 2.10
4541 5882 3.297134 TGCCTCCAGAAAACAAGTCTT 57.703 42.857 0.00 0.00 0.00 3.01
4542 5883 3.297134 TTGCCTCCAGAAAACAAGTCT 57.703 42.857 0.00 0.00 0.00 3.24
4543 5884 5.904362 ATATTGCCTCCAGAAAACAAGTC 57.096 39.130 0.00 0.00 0.00 3.01
4544 5885 7.775053 TTTATATTGCCTCCAGAAAACAAGT 57.225 32.000 0.00 0.00 0.00 3.16
4545 5886 9.090692 CATTTTATATTGCCTCCAGAAAACAAG 57.909 33.333 0.00 0.00 0.00 3.16
4547 5888 7.180051 ACCATTTTATATTGCCTCCAGAAAACA 59.820 33.333 0.00 0.00 0.00 2.83
4548 5889 7.555965 ACCATTTTATATTGCCTCCAGAAAAC 58.444 34.615 0.00 0.00 0.00 2.43
4549 5890 7.398618 TGACCATTTTATATTGCCTCCAGAAAA 59.601 33.333 0.00 0.00 0.00 2.29
4550 5891 6.894654 TGACCATTTTATATTGCCTCCAGAAA 59.105 34.615 0.00 0.00 0.00 2.52
4551 5892 6.430864 TGACCATTTTATATTGCCTCCAGAA 58.569 36.000 0.00 0.00 0.00 3.02
4552 5893 6.012337 TGACCATTTTATATTGCCTCCAGA 57.988 37.500 0.00 0.00 0.00 3.86
4553 5894 6.491062 TCATGACCATTTTATATTGCCTCCAG 59.509 38.462 0.00 0.00 0.00 3.86
4554 5895 6.372104 TCATGACCATTTTATATTGCCTCCA 58.628 36.000 0.00 0.00 0.00 3.86
4580 5921 7.438160 CCTATGTATTCTGCGTGATTTGACTTA 59.562 37.037 0.00 0.00 0.00 2.24
4588 5929 3.259374 CCTCCCTATGTATTCTGCGTGAT 59.741 47.826 0.00 0.00 0.00 3.06
4589 5930 2.628178 CCTCCCTATGTATTCTGCGTGA 59.372 50.000 0.00 0.00 0.00 4.35
4594 5935 3.005897 CCGTCACCTCCCTATGTATTCTG 59.994 52.174 0.00 0.00 0.00 3.02
4622 5965 3.842428 CGTGACGATTTCAAATGCTCAAG 59.158 43.478 0.00 0.00 35.39 3.02
4641 6015 8.321716 CCGAGAAAGATTTCTTCTTATTACGTG 58.678 37.037 9.11 0.00 46.84 4.49
4642 6016 7.010275 GCCGAGAAAGATTTCTTCTTATTACGT 59.990 37.037 9.11 0.00 46.84 3.57
4643 6017 7.010183 TGCCGAGAAAGATTTCTTCTTATTACG 59.990 37.037 9.11 5.76 46.84 3.18
4667 6041 0.761702 AGGGGGCAATGGATTGATGC 60.762 55.000 3.47 0.00 40.14 3.91
4668 6042 1.335145 GAGGGGGCAATGGATTGATG 58.665 55.000 3.47 0.00 40.14 3.07
4695 6069 2.494530 CCCTCCGTAGCAGGCTCTC 61.495 68.421 0.00 0.00 0.00 3.20
4696 6070 2.443016 CCCTCCGTAGCAGGCTCT 60.443 66.667 0.00 0.00 0.00 4.09
4702 6076 0.834687 AAGGTCAACCCTCCGTAGCA 60.835 55.000 0.00 0.00 45.47 3.49
4709 6083 1.066071 GTAGCTCCAAGGTCAACCCTC 60.066 57.143 0.00 0.00 45.47 4.30
4743 6117 8.211629 AGACTACTTCACAAGGAAATTTACACT 58.788 33.333 2.58 0.00 34.44 3.55
4757 6137 4.746535 TTGTGTTCCAGACTACTTCACA 57.253 40.909 0.00 0.00 33.53 3.58
4875 6255 2.097541 GCTCGCGTTAACGATGTAATCC 60.098 50.000 31.03 9.81 41.39 3.01
4926 6306 1.126846 CAAGTCTTGCAACCGACGATC 59.873 52.381 11.81 0.00 35.38 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.