Multiple sequence alignment - TraesCS3A01G364800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G364800 chr3A 100.000 4773 0 0 1 4773 614232079 614227307 0.000000e+00 8815.0
1 TraesCS3A01G364800 chr3A 87.657 559 55 11 4219 4769 311861955 311862507 5.210000e-179 638.0
2 TraesCS3A01G364800 chr3A 86.570 551 50 13 4221 4765 264564 264032 1.910000e-163 586.0
3 TraesCS3A01G364800 chr3A 97.826 46 1 0 1449 1494 442971724 442971769 3.960000e-11 80.5
4 TraesCS3A01G364800 chr3A 96.000 50 0 2 1449 1498 620616310 620616357 3.960000e-11 80.5
5 TraesCS3A01G364800 chr5A 96.937 3297 52 13 1491 4773 425329144 425332405 0.000000e+00 5483.0
6 TraesCS3A01G364800 chr5A 97.224 1477 16 2 1 1453 425327662 425329137 0.000000e+00 2477.0
7 TraesCS3A01G364800 chr5A 97.096 1274 28 7 3502 4773 368212733 368213999 0.000000e+00 2139.0
8 TraesCS3A01G364800 chr5A 89.474 361 38 0 2127 2487 551341931 551341571 1.570000e-124 457.0
9 TraesCS3A01G364800 chr5A 94.318 88 3 2 2709 2795 694494960 694494874 3.000000e-27 134.0
10 TraesCS3A01G364800 chr5A 100.000 45 0 0 1449 1493 646080796 646080752 3.060000e-12 84.2
11 TraesCS3A01G364800 chr5A 97.872 47 1 0 1449 1495 423258027 423257981 1.100000e-11 82.4
12 TraesCS3A01G364800 chr5A 97.872 47 1 0 1449 1495 669848499 669848545 1.100000e-11 82.4
13 TraesCS3A01G364800 chr5A 89.655 58 3 3 1449 1504 168129120 168129064 2.380000e-08 71.3
14 TraesCS3A01G364800 chr3D 93.094 3012 152 22 1788 4770 56352296 56355280 0.000000e+00 4359.0
15 TraesCS3A01G364800 chr3D 93.559 947 36 11 1 939 589021304 589022233 0.000000e+00 1387.0
16 TraesCS3A01G364800 chr3D 94.751 362 18 1 1091 1452 56351675 56352035 3.230000e-156 562.0
17 TraesCS3A01G364800 chr3D 93.725 255 12 4 1491 1743 56352043 56352295 3.490000e-101 379.0
18 TraesCS3A01G364800 chr3D 79.630 324 27 12 4457 4769 85254637 85254932 3.770000e-46 196.0
19 TraesCS3A01G364800 chr7B 90.200 1500 117 14 2406 3893 708411791 708410310 0.000000e+00 1929.0
20 TraesCS3A01G364800 chr7B 95.056 445 14 5 127 570 722677018 722677455 0.000000e+00 693.0
21 TraesCS3A01G364800 chr7B 96.623 385 8 2 563 942 722677032 722676648 6.740000e-178 634.0
22 TraesCS3A01G364800 chr7B 85.971 556 56 13 4219 4769 647150042 647149504 4.140000e-160 575.0
23 TraesCS3A01G364800 chr7B 88.000 450 44 7 4325 4769 708382266 708381822 1.520000e-144 523.0
24 TraesCS3A01G364800 chr7B 92.941 85 6 0 3889 3973 708382348 708382264 1.800000e-24 124.0
25 TraesCS3A01G364800 chr7B 81.443 97 11 4 3128 3221 468948761 468948853 6.630000e-09 73.1
26 TraesCS3A01G364800 chr4D 96.288 943 23 5 1 939 491368921 491367987 0.000000e+00 1537.0
27 TraesCS3A01G364800 chr4D 95.354 947 32 5 1 942 215158312 215159251 0.000000e+00 1495.0
28 TraesCS3A01G364800 chrUn 96.190 945 24 5 2 942 12121124 12120188 0.000000e+00 1535.0
29 TraesCS3A01G364800 chr7D 96.480 909 22 4 38 942 70181326 70180424 0.000000e+00 1493.0
30 TraesCS3A01G364800 chr7D 87.950 556 56 7 4219 4769 61950905 61950356 0.000000e+00 645.0
31 TraesCS3A01G364800 chr7D 92.143 140 10 1 950 1089 511139667 511139529 3.770000e-46 196.0
32 TraesCS3A01G364800 chr6D 93.757 849 18 8 76 914 6891812 6892635 0.000000e+00 1242.0
33 TraesCS3A01G364800 chr3B 94.852 641 25 5 4136 4773 229745661 229746296 0.000000e+00 994.0
34 TraesCS3A01G364800 chr3B 85.714 91 13 0 1788 1878 782675616 782675526 3.930000e-16 97.1
35 TraesCS3A01G364800 chr3B 85.556 90 13 0 1788 1877 145890171 145890082 1.410000e-15 95.3
36 TraesCS3A01G364800 chr3B 82.474 97 12 3 3128 3221 198129707 198129613 3.960000e-11 80.5
37 TraesCS3A01G364800 chr5B 95.056 445 14 5 127 570 686438762 686438325 0.000000e+00 693.0
38 TraesCS3A01G364800 chr5B 88.182 550 50 10 4225 4769 135803900 135803361 4.030000e-180 641.0
39 TraesCS3A01G364800 chr5B 90.080 373 30 4 4225 4594 166675932 166675564 1.200000e-130 477.0
40 TraesCS3A01G364800 chr5B 92.000 125 6 2 1 122 686438206 686438329 6.350000e-39 172.0
41 TraesCS3A01G364800 chr5B 96.552 58 2 0 1 58 521407363 521407306 3.930000e-16 97.1
42 TraesCS3A01G364800 chr7A 90.116 516 48 2 1972 2487 668650347 668649835 0.000000e+00 667.0
43 TraesCS3A01G364800 chr7A 96.708 243 7 1 368 610 518159268 518159509 2.070000e-108 403.0
44 TraesCS3A01G364800 chr7A 84.444 90 14 0 1788 1877 21259838 21259749 6.580000e-14 89.8
45 TraesCS3A01G364800 chr2A 90.253 513 47 2 1972 2484 527321557 527322066 0.000000e+00 667.0
46 TraesCS3A01G364800 chr2A 88.732 213 24 0 2583 2795 256890122 256889910 1.320000e-65 261.0
47 TraesCS3A01G364800 chr2A 91.975 162 11 1 2505 2664 196515219 196515380 4.810000e-55 226.0
48 TraesCS3A01G364800 chr4A 89.474 513 50 3 1972 2484 629587134 629587642 0.000000e+00 645.0
49 TraesCS3A01G364800 chr4A 96.623 385 8 2 563 942 743360512 743360896 6.740000e-178 634.0
50 TraesCS3A01G364800 chr4A 92.000 125 6 2 1 122 743359970 743360093 6.350000e-39 172.0
51 TraesCS3A01G364800 chr4B 96.364 385 9 2 563 942 473124673 473124289 3.140000e-176 628.0
52 TraesCS3A01G364800 chr4B 90.511 137 12 1 953 1088 28265213 28265077 3.800000e-41 180.0
53 TraesCS3A01G364800 chr6A 86.438 553 51 13 4219 4765 586810878 586811412 6.880000e-163 584.0
54 TraesCS3A01G364800 chr6A 86.667 90 12 0 1788 1877 565107749 565107660 3.040000e-17 100.0
55 TraesCS3A01G364800 chr6A 84.444 90 14 0 1788 1877 2969198 2969109 6.580000e-14 89.8
56 TraesCS3A01G364800 chr6A 100.000 43 0 0 1449 1491 579063925 579063883 3.960000e-11 80.5
57 TraesCS3A01G364800 chr2D 94.521 365 20 0 1089 1453 453866992 453866628 8.970000e-157 564.0
58 TraesCS3A01G364800 chr2D 91.566 249 16 4 1491 1736 453866621 453866375 5.920000e-89 339.0
59 TraesCS3A01G364800 chr2D 87.383 214 18 5 2583 2795 207480366 207480571 2.220000e-58 237.0
60 TraesCS3A01G364800 chr2D 88.235 187 15 4 1788 1967 453866375 453866189 2.890000e-52 217.0
61 TraesCS3A01G364800 chr2D 90.184 163 12 2 2506 2664 181301690 181301852 4.840000e-50 209.0
62 TraesCS3A01G364800 chr1A 82.205 517 81 8 3161 3668 36389463 36389977 7.340000e-118 435.0
63 TraesCS3A01G364800 chr1A 94.318 88 3 2 2709 2795 291680233 291680147 3.000000e-27 134.0
64 TraesCS3A01G364800 chr1A 100.000 44 0 0 1449 1492 102190082 102190039 1.100000e-11 82.4
65 TraesCS3A01G364800 chr1A 100.000 44 0 0 1449 1492 545758781 545758824 1.100000e-11 82.4
66 TraesCS3A01G364800 chr1D 85.030 167 21 3 1287 1453 334215105 334215267 2.950000e-37 167.0
67 TraesCS3A01G364800 chr5D 84.444 90 14 0 1788 1877 108547826 108547737 6.580000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G364800 chr3A 614227307 614232079 4772 True 8815.000000 8815 100.000000 1 4773 1 chr3A.!!$R2 4772
1 TraesCS3A01G364800 chr3A 311861955 311862507 552 False 638.000000 638 87.657000 4219 4769 1 chr3A.!!$F1 550
2 TraesCS3A01G364800 chr3A 264032 264564 532 True 586.000000 586 86.570000 4221 4765 1 chr3A.!!$R1 544
3 TraesCS3A01G364800 chr5A 425327662 425332405 4743 False 3980.000000 5483 97.080500 1 4773 2 chr5A.!!$F3 4772
4 TraesCS3A01G364800 chr5A 368212733 368213999 1266 False 2139.000000 2139 97.096000 3502 4773 1 chr5A.!!$F1 1271
5 TraesCS3A01G364800 chr3D 56351675 56355280 3605 False 1766.666667 4359 93.856667 1091 4770 3 chr3D.!!$F3 3679
6 TraesCS3A01G364800 chr3D 589021304 589022233 929 False 1387.000000 1387 93.559000 1 939 1 chr3D.!!$F2 938
7 TraesCS3A01G364800 chr7B 708410310 708411791 1481 True 1929.000000 1929 90.200000 2406 3893 1 chr7B.!!$R2 1487
8 TraesCS3A01G364800 chr7B 647149504 647150042 538 True 575.000000 575 85.971000 4219 4769 1 chr7B.!!$R1 550
9 TraesCS3A01G364800 chr7B 708381822 708382348 526 True 323.500000 523 90.470500 3889 4769 2 chr7B.!!$R4 880
10 TraesCS3A01G364800 chr4D 491367987 491368921 934 True 1537.000000 1537 96.288000 1 939 1 chr4D.!!$R1 938
11 TraesCS3A01G364800 chr4D 215158312 215159251 939 False 1495.000000 1495 95.354000 1 942 1 chr4D.!!$F1 941
12 TraesCS3A01G364800 chrUn 12120188 12121124 936 True 1535.000000 1535 96.190000 2 942 1 chrUn.!!$R1 940
13 TraesCS3A01G364800 chr7D 70180424 70181326 902 True 1493.000000 1493 96.480000 38 942 1 chr7D.!!$R2 904
14 TraesCS3A01G364800 chr7D 61950356 61950905 549 True 645.000000 645 87.950000 4219 4769 1 chr7D.!!$R1 550
15 TraesCS3A01G364800 chr6D 6891812 6892635 823 False 1242.000000 1242 93.757000 76 914 1 chr6D.!!$F1 838
16 TraesCS3A01G364800 chr3B 229745661 229746296 635 False 994.000000 994 94.852000 4136 4773 1 chr3B.!!$F1 637
17 TraesCS3A01G364800 chr5B 135803361 135803900 539 True 641.000000 641 88.182000 4225 4769 1 chr5B.!!$R1 544
18 TraesCS3A01G364800 chr7A 668649835 668650347 512 True 667.000000 667 90.116000 1972 2487 1 chr7A.!!$R2 515
19 TraesCS3A01G364800 chr2A 527321557 527322066 509 False 667.000000 667 90.253000 1972 2484 1 chr2A.!!$F2 512
20 TraesCS3A01G364800 chr4A 629587134 629587642 508 False 645.000000 645 89.474000 1972 2484 1 chr4A.!!$F1 512
21 TraesCS3A01G364800 chr4A 743359970 743360896 926 False 403.000000 634 94.311500 1 942 2 chr4A.!!$F2 941
22 TraesCS3A01G364800 chr6A 586810878 586811412 534 False 584.000000 584 86.438000 4219 4765 1 chr6A.!!$F1 546
23 TraesCS3A01G364800 chr2D 453866189 453866992 803 True 373.333333 564 91.440667 1089 1967 3 chr2D.!!$R1 878
24 TraesCS3A01G364800 chr1A 36389463 36389977 514 False 435.000000 435 82.205000 3161 3668 1 chr1A.!!$F1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
441 453 0.250901 GCTTCCCTGCAACTCCAGAA 60.251 55.000 0.0 0.0 34.77 3.02 F
1314 1636 0.603172 ATGCGATCCTGAGCTGATGC 60.603 55.000 0.0 0.0 40.05 3.91 F
1458 1780 1.217882 CCGTATGGTTCAGAATCGCC 58.782 55.000 0.0 0.0 0.00 5.54 F
1459 1781 1.472552 CCGTATGGTTCAGAATCGCCA 60.473 52.381 0.0 0.0 35.28 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 2094 2.675844 GTGTGTGTGTGTGTGTGTGTAT 59.324 45.455 0.00 0.00 0.00 2.29 R
3257 3627 1.000506 TGTCGTGCCTTTAGGACAGAC 59.999 52.381 0.00 5.65 39.65 3.51 R
3405 3778 7.721399 CCTTCCTGCTATTATCCAAAATGTACT 59.279 37.037 0.00 0.00 0.00 2.73 R
3822 4202 4.199310 AGCGAAAATAGGATAAAGCTGCA 58.801 39.130 1.02 0.00 32.01 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
223 231 3.386237 GCTGCTGTCCTCCCGTCT 61.386 66.667 0.00 0.00 0.00 4.18
231 239 4.203076 CCTCCCGTCTAACCCGCG 62.203 72.222 0.00 0.00 0.00 6.46
441 453 0.250901 GCTTCCCTGCAACTCCAGAA 60.251 55.000 0.00 0.00 34.77 3.02
1011 1333 4.148825 GTGGAGATGGCCGACGCT 62.149 66.667 0.00 0.00 34.44 5.07
1025 1347 3.075998 CGCTGTAGACAAGCGCTG 58.924 61.111 12.58 8.13 44.91 5.18
1084 1406 1.661112 GCCATGCTAGACGAGAACAAC 59.339 52.381 0.00 0.00 0.00 3.32
1314 1636 0.603172 ATGCGATCCTGAGCTGATGC 60.603 55.000 0.00 0.00 40.05 3.91
1453 1775 5.180492 CAGTTTTTAGCCGTATGGTTCAGAA 59.820 40.000 2.17 0.00 37.67 3.02
1454 1776 5.944007 AGTTTTTAGCCGTATGGTTCAGAAT 59.056 36.000 2.17 0.00 37.67 2.40
1456 1778 2.225068 AGCCGTATGGTTCAGAATCG 57.775 50.000 2.17 0.00 37.67 3.34
1458 1780 1.217882 CCGTATGGTTCAGAATCGCC 58.782 55.000 0.00 0.00 0.00 5.54
1459 1781 1.472552 CCGTATGGTTCAGAATCGCCA 60.473 52.381 0.00 0.00 35.28 5.69
1460 1782 2.483876 CGTATGGTTCAGAATCGCCAT 58.516 47.619 8.46 8.46 43.38 4.40
1461 1783 3.554129 CCGTATGGTTCAGAATCGCCATA 60.554 47.826 6.83 6.83 41.45 2.74
1462 1784 4.055360 CGTATGGTTCAGAATCGCCATAA 58.945 43.478 11.02 0.00 43.16 1.90
1463 1785 4.690748 CGTATGGTTCAGAATCGCCATAAT 59.309 41.667 11.02 0.00 43.16 1.28
1464 1786 5.179368 CGTATGGTTCAGAATCGCCATAATT 59.821 40.000 11.02 0.00 43.16 1.40
1465 1787 4.898829 TGGTTCAGAATCGCCATAATTG 57.101 40.909 0.00 0.00 0.00 2.32
1466 1788 3.631686 TGGTTCAGAATCGCCATAATTGG 59.368 43.478 0.00 0.00 46.66 3.16
1467 1789 3.882888 GGTTCAGAATCGCCATAATTGGA 59.117 43.478 0.00 0.00 46.92 3.53
1468 1790 4.023707 GGTTCAGAATCGCCATAATTGGAG 60.024 45.833 0.00 0.00 46.92 3.86
1469 1791 4.422073 TCAGAATCGCCATAATTGGAGT 57.578 40.909 0.00 0.00 46.92 3.85
1470 1792 4.129380 TCAGAATCGCCATAATTGGAGTG 58.871 43.478 0.00 0.00 46.92 3.51
1471 1793 3.251729 CAGAATCGCCATAATTGGAGTGG 59.748 47.826 0.00 0.00 46.92 4.00
1480 1802 6.653526 CCATAATTGGAGTGGCATTTATCA 57.346 37.500 0.00 0.00 46.92 2.15
1481 1803 7.053316 CCATAATTGGAGTGGCATTTATCAA 57.947 36.000 0.00 0.00 46.92 2.57
1482 1804 7.499292 CCATAATTGGAGTGGCATTTATCAAA 58.501 34.615 0.00 0.00 46.92 2.69
1483 1805 8.152246 CCATAATTGGAGTGGCATTTATCAAAT 58.848 33.333 0.00 0.00 46.92 2.32
1484 1806 9.550406 CATAATTGGAGTGGCATTTATCAAATT 57.450 29.630 0.00 1.86 31.77 1.82
1487 1809 8.947055 ATTGGAGTGGCATTTATCAAATTAAC 57.053 30.769 0.00 0.00 0.00 2.01
1488 1810 6.872920 TGGAGTGGCATTTATCAAATTAACC 58.127 36.000 0.00 0.00 0.00 2.85
1489 1811 6.127196 TGGAGTGGCATTTATCAAATTAACCC 60.127 38.462 0.00 0.00 0.00 4.11
1588 1911 4.647564 ACAGAGAAGTTGTTCCATGGAT 57.352 40.909 17.06 0.00 32.48 3.41
2007 2367 3.961408 GACTTGGCAAGGGATAGAGACTA 59.039 47.826 29.26 0.00 0.00 2.59
2014 2374 4.039730 GCAAGGGATAGAGACTAGCATGAA 59.960 45.833 0.00 0.00 0.00 2.57
2017 2377 7.222872 CAAGGGATAGAGACTAGCATGAATTT 58.777 38.462 0.00 0.00 0.00 1.82
2210 2571 7.430760 AGCTGGTAAGTTTCTCATATCTTCT 57.569 36.000 0.00 0.00 0.00 2.85
2490 2851 2.039480 TGCTTCAAGTCTGATTGCTCCT 59.961 45.455 0.00 0.00 34.44 3.69
4242 4624 0.522705 CGCATGTTGCACAGAGATGC 60.523 55.000 8.53 8.53 45.36 3.91
4323 4705 5.420739 ACACCACAAAATTTCCTTACTGTGT 59.579 36.000 14.26 8.79 32.62 3.72
4600 4991 5.975693 TGGATGAACTTTTGTTATGGGAC 57.024 39.130 0.00 0.00 43.66 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1011 1333 1.591703 CTCCCAGCGCTTGTCTACA 59.408 57.895 7.50 0.00 0.00 2.74
1084 1406 3.595173 TGAACATCATCTACCACGGTTG 58.405 45.455 0.00 0.00 0.00 3.77
1314 1636 6.403636 CCAATCAAGAAAACATAGGACCTTCG 60.404 42.308 0.00 0.00 0.00 3.79
1458 1780 9.550406 AATTTGATAAATGCCACTCCAATTATG 57.450 29.630 0.00 0.00 0.00 1.90
1461 1783 9.382275 GTTAATTTGATAAATGCCACTCCAATT 57.618 29.630 0.00 0.00 0.00 2.32
1462 1784 7.986889 GGTTAATTTGATAAATGCCACTCCAAT 59.013 33.333 0.00 0.00 0.00 3.16
1463 1785 7.327214 GGTTAATTTGATAAATGCCACTCCAA 58.673 34.615 0.00 0.00 0.00 3.53
1464 1786 6.127196 GGGTTAATTTGATAAATGCCACTCCA 60.127 38.462 0.00 0.00 0.00 3.86
1465 1787 6.098266 AGGGTTAATTTGATAAATGCCACTCC 59.902 38.462 0.00 0.00 0.00 3.85
1466 1788 7.112452 AGGGTTAATTTGATAAATGCCACTC 57.888 36.000 0.00 0.00 0.00 3.51
1467 1789 8.602472 TTAGGGTTAATTTGATAAATGCCACT 57.398 30.769 0.00 0.00 0.00 4.00
1468 1790 9.830975 AATTAGGGTTAATTTGATAAATGCCAC 57.169 29.630 0.00 0.00 36.33 5.01
1483 1805 9.186837 TGTGTTTGACAAAGTAATTAGGGTTAA 57.813 29.630 0.00 0.00 0.00 2.01
1484 1806 8.623030 GTGTGTTTGACAAAGTAATTAGGGTTA 58.377 33.333 0.00 0.00 35.91 2.85
1485 1807 7.122948 TGTGTGTTTGACAAAGTAATTAGGGTT 59.877 33.333 0.00 0.00 35.91 4.11
1486 1808 6.603997 TGTGTGTTTGACAAAGTAATTAGGGT 59.396 34.615 0.00 0.00 35.91 4.34
1487 1809 7.033530 TGTGTGTTTGACAAAGTAATTAGGG 57.966 36.000 0.00 0.00 35.91 3.53
1646 1971 7.198390 CCATGAGCCATTACAAACTTTGATAG 58.802 38.462 8.55 0.00 0.00 2.08
1738 2071 9.738832 GTATATACACACACACACACACATATA 57.261 33.333 8.05 0.00 0.00 0.86
1739 2072 8.254508 TGTATATACACACACACACACACATAT 58.745 33.333 11.62 0.00 0.00 1.78
1740 2073 7.603651 TGTATATACACACACACACACACATA 58.396 34.615 11.62 0.00 0.00 2.29
1741 2074 6.459923 TGTATATACACACACACACACACAT 58.540 36.000 11.62 0.00 0.00 3.21
1742 2075 5.844004 TGTATATACACACACACACACACA 58.156 37.500 11.62 0.00 0.00 3.72
1756 2089 5.692654 GTGTGTGTGTGTGTGTGTATATACA 59.307 40.000 11.62 11.62 0.00 2.29
1757 2090 5.692654 TGTGTGTGTGTGTGTGTGTATATAC 59.307 40.000 5.89 5.89 0.00 1.47
1758 2091 5.692654 GTGTGTGTGTGTGTGTGTGTATATA 59.307 40.000 0.00 0.00 0.00 0.86
1759 2092 4.509970 GTGTGTGTGTGTGTGTGTGTATAT 59.490 41.667 0.00 0.00 0.00 0.86
1760 2093 3.866327 GTGTGTGTGTGTGTGTGTGTATA 59.134 43.478 0.00 0.00 0.00 1.47
1761 2094 2.675844 GTGTGTGTGTGTGTGTGTGTAT 59.324 45.455 0.00 0.00 0.00 2.29
2210 2571 6.412362 TTTGCAAAGGCTAAATAAAGGACA 57.588 33.333 8.05 0.00 41.91 4.02
2490 2851 5.833131 AGGAACTAAGCCTTGAATCAAACAA 59.167 36.000 0.00 0.00 36.02 2.83
3257 3627 1.000506 TGTCGTGCCTTTAGGACAGAC 59.999 52.381 0.00 5.65 39.65 3.51
3405 3778 7.721399 CCTTCCTGCTATTATCCAAAATGTACT 59.279 37.037 0.00 0.00 0.00 2.73
3822 4202 4.199310 AGCGAAAATAGGATAAAGCTGCA 58.801 39.130 1.02 0.00 32.01 4.41
4242 4624 8.827177 AATTAGAATTCATGCATGCCAAATAG 57.173 30.769 22.25 0.00 0.00 1.73
4741 5133 5.619981 GCCCGATACAAATTATGGAATGCTC 60.620 44.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.