Multiple sequence alignment - TraesCS3A01G364500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G364500 chr3A 100.000 2207 0 0 1 2207 613197122 613199328 0.000000e+00 4076.0
1 TraesCS3A01G364500 chr3A 98.077 104 1 1 2104 2207 128605805 128605703 1.740000e-41 180.0
2 TraesCS3A01G364500 chr3D 90.491 978 54 17 532 1481 471077683 471078649 0.000000e+00 1254.0
3 TraesCS3A01G364500 chr3D 86.314 643 79 8 1474 2110 13189443 13188804 0.000000e+00 691.0
4 TraesCS3A01G364500 chr3D 80.310 645 104 18 1481 2110 498400461 498399825 1.190000e-127 466.0
5 TraesCS3A01G364500 chr3D 87.209 86 7 3 62 143 359914317 359914232 6.490000e-16 95.3
6 TraesCS3A01G364500 chr3D 80.000 110 13 7 76 179 442760303 442760409 3.040000e-09 73.1
7 TraesCS3A01G364500 chr3B 87.487 959 45 24 557 1472 625420801 625421727 0.000000e+00 1037.0
8 TraesCS3A01G364500 chr5A 84.507 639 81 10 1477 2110 413052725 413053350 1.120000e-172 616.0
9 TraesCS3A01G364500 chr5A 81.287 513 79 11 1478 1976 432935311 432934802 1.230000e-107 399.0
10 TraesCS3A01G364500 chr5A 99.010 101 0 1 2107 2207 297126534 297126435 1.740000e-41 180.0
11 TraesCS3A01G364500 chr5A 80.952 105 15 3 79 179 78922071 78922174 6.530000e-11 78.7
12 TraesCS3A01G364500 chr5A 80.952 105 14 4 79 179 417308103 417308001 6.530000e-11 78.7
13 TraesCS3A01G364500 chr1B 85.445 584 74 7 1479 2053 114489732 114489151 4.060000e-167 597.0
14 TraesCS3A01G364500 chr1B 84.553 123 13 5 210 327 334434352 334434231 1.380000e-22 117.0
15 TraesCS3A01G364500 chr1B 80.180 111 15 3 70 179 658793948 658793844 2.350000e-10 76.8
16 TraesCS3A01G364500 chr4D 82.935 627 100 6 1481 2101 11877761 11877136 1.910000e-155 558.0
17 TraesCS3A01G364500 chr4D 81.692 650 104 8 1474 2110 315023189 315022542 5.400000e-146 527.0
18 TraesCS3A01G364500 chr4D 84.956 113 11 2 212 318 474938016 474937904 2.320000e-20 110.0
19 TraesCS3A01G364500 chr4D 83.478 115 13 4 210 318 417930643 417930529 3.880000e-18 102.0
20 TraesCS3A01G364500 chr4D 84.848 99 11 4 212 307 483599301 483599398 1.800000e-16 97.1
21 TraesCS3A01G364500 chr4D 76.879 173 27 11 210 379 414638892 414638730 3.900000e-13 86.1
22 TraesCS3A01G364500 chr4D 79.439 107 14 5 79 179 486344250 486344146 3.930000e-08 69.4
23 TraesCS3A01G364500 chr4D 83.117 77 9 2 76 148 451794857 451794933 1.410000e-07 67.6
24 TraesCS3A01G364500 chr4D 77.778 108 13 7 80 179 6756959 6756855 3.060000e-04 56.5
25 TraesCS3A01G364500 chr1D 83.307 629 80 14 1481 2098 269992005 269991391 6.880000e-155 556.0
26 TraesCS3A01G364500 chr1D 84.821 112 11 3 210 315 365089164 365089275 8.330000e-20 108.0
27 TraesCS3A01G364500 chr1D 81.452 124 17 4 210 327 140112277 140112400 1.800000e-16 97.1
28 TraesCS3A01G364500 chr1D 81.034 116 13 5 64 179 93099172 93099278 1.400000e-12 84.2
29 TraesCS3A01G364500 chr1D 84.706 85 9 3 63 143 450114944 450115028 5.050000e-12 82.4
30 TraesCS3A01G364500 chr1D 81.034 116 8 8 152 255 28963833 28963946 1.820000e-11 80.5
31 TraesCS3A01G364500 chr1D 85.507 69 8 2 80 148 37966659 37966593 1.090000e-08 71.3
32 TraesCS3A01G364500 chr1D 85.135 74 6 3 79 148 307441884 307441812 1.090000e-08 71.3
33 TraesCS3A01G364500 chr7A 81.692 650 72 18 1481 2110 28354259 28354881 4.230000e-137 497.0
34 TraesCS3A01G364500 chr7A 82.069 145 21 3 191 332 7814302 7814160 3.850000e-23 119.0
35 TraesCS3A01G364500 chr7A 81.188 101 17 1 79 179 80728340 80728242 1.820000e-11 80.5
36 TraesCS3A01G364500 chr7A 81.188 101 16 2 79 179 80805471 80805374 6.530000e-11 78.7
37 TraesCS3A01G364500 chr2A 80.401 648 72 26 1481 2110 520983334 520983944 2.010000e-120 442.0
38 TraesCS3A01G364500 chr2A 82.576 264 45 1 1848 2110 239374249 239373986 4.740000e-57 231.0
39 TraesCS3A01G364500 chr2A 100.000 99 0 0 2109 2207 168730980 168731078 1.350000e-42 183.0
40 TraesCS3A01G364500 chr6D 79.439 642 101 20 1486 2110 20360887 20360260 2.030000e-115 425.0
41 TraesCS3A01G364500 chr6D 86.842 114 8 6 212 318 97296702 97296815 1.070000e-23 121.0
42 TraesCS3A01G364500 chr6D 80.620 129 17 7 211 332 158530300 158530427 2.330000e-15 93.5
43 TraesCS3A01G364500 chr6D 81.250 112 14 5 211 315 455638333 455638444 1.400000e-12 84.2
44 TraesCS3A01G364500 chr6D 81.081 111 11 6 210 310 384435122 384435232 1.820000e-11 80.5
45 TraesCS3A01G364500 chr6D 87.879 66 6 2 76 141 420967380 420967443 2.350000e-10 76.8
46 TraesCS3A01G364500 chr6D 83.529 85 9 4 62 141 422031889 422031973 8.450000e-10 75.0
47 TraesCS3A01G364500 chr6D 89.474 57 5 1 64 120 14082411 14082466 1.090000e-08 71.3
48 TraesCS3A01G364500 chr6D 84.000 75 7 2 79 148 359522486 359522412 1.410000e-07 67.6
49 TraesCS3A01G364500 chr6D 83.333 72 11 1 64 134 63711588 63711517 5.090000e-07 65.8
50 TraesCS3A01G364500 chr6D 83.117 77 6 4 79 148 439173385 439173309 1.830000e-06 63.9
51 TraesCS3A01G364500 chr6D 81.944 72 10 3 79 147 324813377 324813306 8.510000e-05 58.4
52 TraesCS3A01G364500 chr6D 100.000 29 0 0 79 107 462288683 462288655 1.000000e-03 54.7
53 TraesCS3A01G364500 chr6D 96.875 32 1 0 76 107 473291055 473291086 1.000000e-03 54.7
54 TraesCS3A01G364500 chr6D 100.000 28 0 0 152 179 380733763 380733736 4.000000e-03 52.8
55 TraesCS3A01G364500 chr4A 100.000 99 0 0 2109 2207 155885020 155884922 1.350000e-42 183.0
56 TraesCS3A01G364500 chr1A 100.000 99 0 0 2109 2207 219069574 219069476 1.350000e-42 183.0
57 TraesCS3A01G364500 chr1A 100.000 99 0 0 2109 2207 572127428 572127526 1.350000e-42 183.0
58 TraesCS3A01G364500 chr1A 85.841 113 11 3 212 319 566795722 566795610 4.980000e-22 115.0
59 TraesCS3A01G364500 chr1A 85.841 113 10 3 212 318 568517101 568516989 4.980000e-22 115.0
60 TraesCS3A01G364500 chr1A 83.333 90 12 3 62 149 545337382 545337470 1.820000e-11 80.5
61 TraesCS3A01G364500 chr6A 100.000 98 0 0 2110 2207 183748984 183749081 4.840000e-42 182.0
62 TraesCS3A01G364500 chr6A 85.047 107 12 3 210 315 598319118 598319221 3.000000e-19 106.0
63 TraesCS3A01G364500 chr6A 85.185 108 10 4 210 312 611863657 611863763 3.000000e-19 106.0
64 TraesCS3A01G364500 chr6A 85.859 99 10 3 210 307 598513125 598513220 3.880000e-18 102.0
65 TraesCS3A01G364500 chr6A 88.060 67 4 3 79 141 178073639 178073573 2.350000e-10 76.8
66 TraesCS3A01G364500 chr6B 95.455 110 5 0 2098 2207 557725406 557725297 2.250000e-40 176.0
67 TraesCS3A01G364500 chr6B 87.402 127 11 3 210 332 4637018 4637143 8.220000e-30 141.0
68 TraesCS3A01G364500 chr6B 87.395 119 9 2 207 320 716445683 716445800 4.940000e-27 132.0
69 TraesCS3A01G364500 chr6B 88.785 107 9 2 210 315 664165564 664165668 6.400000e-26 128.0
70 TraesCS3A01G364500 chr6B 86.239 109 13 2 212 318 24452788 24452680 1.380000e-22 117.0
71 TraesCS3A01G364500 chr6B 92.647 68 2 1 79 143 526801014 526800947 6.490000e-16 95.3
72 TraesCS3A01G364500 chr6B 79.817 109 16 5 76 179 715538806 715538913 8.450000e-10 75.0
73 TraesCS3A01G364500 chr5B 96.296 108 2 2 2101 2207 499616071 499616177 2.250000e-40 176.0
74 TraesCS3A01G364500 chr5B 85.827 127 10 7 210 331 705061389 705061512 6.400000e-26 128.0
75 TraesCS3A01G364500 chr5B 81.132 106 14 3 79 179 324567692 324567588 1.820000e-11 80.5
76 TraesCS3A01G364500 chr7B 83.893 149 17 6 210 355 105511620 105511764 3.820000e-28 135.0
77 TraesCS3A01G364500 chr7B 79.006 181 18 13 154 318 4234182 4234006 3.000000e-19 106.0
78 TraesCS3A01G364500 chr7B 81.373 102 12 4 79 174 643163750 643163650 2.350000e-10 76.8
79 TraesCS3A01G364500 chr5D 84.962 133 7 7 210 330 12067909 12068040 2.980000e-24 122.0
80 TraesCS3A01G364500 chr5D 93.023 43 3 0 488 530 558027563 558027605 1.830000e-06 63.9
81 TraesCS3A01G364500 chr2D 82.759 145 16 8 215 350 23561262 23561118 1.070000e-23 121.0
82 TraesCS3A01G364500 chr2D 78.182 220 24 13 147 344 629376982 629376765 3.850000e-23 119.0
83 TraesCS3A01G364500 chr2D 81.250 112 13 7 76 180 645063466 645063576 1.400000e-12 84.2
84 TraesCS3A01G364500 chr4B 82.313 147 16 8 213 350 647732828 647732683 3.850000e-23 119.0
85 TraesCS3A01G364500 chr4B 85.217 115 11 3 210 318 115076618 115076504 1.790000e-21 113.0
86 TraesCS3A01G364500 chr4B 80.892 157 15 10 210 357 359865493 359865643 2.320000e-20 110.0
87 TraesCS3A01G364500 chr4B 81.818 110 12 4 76 180 527965457 527965563 3.900000e-13 86.1
88 TraesCS3A01G364500 chr4B 80.583 103 16 4 79 179 245684734 245684634 2.350000e-10 76.8
89 TraesCS3A01G364500 chr4B 80.000 105 15 3 79 179 405943418 405943316 3.040000e-09 73.1
90 TraesCS3A01G364500 chrUn 83.582 134 9 6 210 331 358062454 358062586 1.790000e-21 113.0
91 TraesCS3A01G364500 chrUn 83.582 134 9 6 210 331 427342315 427342447 1.790000e-21 113.0
92 TraesCS3A01G364500 chrUn 83.333 120 19 1 203 322 42588758 42588640 2.320000e-20 110.0
93 TraesCS3A01G364500 chrUn 84.071 113 9 4 212 315 208186905 208187017 1.390000e-17 100.0
94 TraesCS3A01G364500 chrUn 83.621 116 10 4 212 318 404035013 404034898 1.390000e-17 100.0
95 TraesCS3A01G364500 chrUn 84.112 107 10 3 210 310 303792816 303792711 1.800000e-16 97.1
96 TraesCS3A01G364500 chrUn 88.462 78 6 2 211 285 387828068 387827991 8.390000e-15 91.6
97 TraesCS3A01G364500 chrUn 88.462 78 6 2 211 285 463929334 463929257 8.390000e-15 91.6
98 TraesCS3A01G364500 chrUn 80.556 108 18 2 212 318 184042961 184042856 1.820000e-11 80.5
99 TraesCS3A01G364500 chrUn 78.070 114 13 6 153 255 146367243 146367131 6.580000e-06 62.1
100 TraesCS3A01G364500 chrUn 78.000 100 18 3 80 179 146313167 146313072 2.370000e-05 60.2
101 TraesCS3A01G364500 chrUn 89.362 47 2 3 288 331 227010788 227010834 3.060000e-04 56.5
102 TraesCS3A01G364500 chrUn 85.965 57 3 5 282 333 358062246 358062302 3.060000e-04 56.5
103 TraesCS3A01G364500 chrUn 85.714 56 3 5 282 332 427342107 427342162 1.000000e-03 54.7
104 TraesCS3A01G364500 chrUn 100.000 28 0 0 152 179 52970239 52970266 4.000000e-03 52.8
105 TraesCS3A01G364500 chrUn 100.000 28 0 0 152 179 75667622 75667649 4.000000e-03 52.8
106 TraesCS3A01G364500 chrUn 100.000 28 0 0 152 179 282654069 282654042 4.000000e-03 52.8
107 TraesCS3A01G364500 chrUn 100.000 28 0 0 152 179 310404317 310404344 4.000000e-03 52.8
108 TraesCS3A01G364500 chrUn 100.000 28 0 0 152 179 345775310 345775283 4.000000e-03 52.8
109 TraesCS3A01G364500 chr7D 82.576 132 15 5 209 332 40260970 40260839 2.320000e-20 110.0
110 TraesCS3A01G364500 chr7D 81.651 109 14 4 76 179 397552476 397552583 3.900000e-13 86.1
111 TraesCS3A01G364500 chr7D 79.817 109 15 5 76 179 97951450 97951556 3.040000e-09 73.1
112 TraesCS3A01G364500 chr2B 88.889 81 9 0 61 141 134707852 134707772 1.390000e-17 100.0
113 TraesCS3A01G364500 chr2B 81.731 104 16 2 79 179 734068481 734068378 1.400000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G364500 chr3A 613197122 613199328 2206 False 4076 4076 100.000 1 2207 1 chr3A.!!$F1 2206
1 TraesCS3A01G364500 chr3D 471077683 471078649 966 False 1254 1254 90.491 532 1481 1 chr3D.!!$F2 949
2 TraesCS3A01G364500 chr3D 13188804 13189443 639 True 691 691 86.314 1474 2110 1 chr3D.!!$R1 636
3 TraesCS3A01G364500 chr3D 498399825 498400461 636 True 466 466 80.310 1481 2110 1 chr3D.!!$R3 629
4 TraesCS3A01G364500 chr3B 625420801 625421727 926 False 1037 1037 87.487 557 1472 1 chr3B.!!$F1 915
5 TraesCS3A01G364500 chr5A 413052725 413053350 625 False 616 616 84.507 1477 2110 1 chr5A.!!$F2 633
6 TraesCS3A01G364500 chr5A 432934802 432935311 509 True 399 399 81.287 1478 1976 1 chr5A.!!$R3 498
7 TraesCS3A01G364500 chr1B 114489151 114489732 581 True 597 597 85.445 1479 2053 1 chr1B.!!$R1 574
8 TraesCS3A01G364500 chr4D 11877136 11877761 625 True 558 558 82.935 1481 2101 1 chr4D.!!$R2 620
9 TraesCS3A01G364500 chr4D 315022542 315023189 647 True 527 527 81.692 1474 2110 1 chr4D.!!$R3 636
10 TraesCS3A01G364500 chr1D 269991391 269992005 614 True 556 556 83.307 1481 2098 1 chr1D.!!$R2 617
11 TraesCS3A01G364500 chr7A 28354259 28354881 622 False 497 497 81.692 1481 2110 1 chr7A.!!$F1 629
12 TraesCS3A01G364500 chr2A 520983334 520983944 610 False 442 442 80.401 1481 2110 1 chr2A.!!$F2 629
13 TraesCS3A01G364500 chr6D 20360260 20360887 627 True 425 425 79.439 1486 2110 1 chr6D.!!$R1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.037605 AGCCGTTTCCAAGAGGTACG 60.038 55.0 0.0 0.0 40.85 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1228 1280 0.251474 AGGCACCATGAAGCACACAT 60.251 50.0 10.76 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.466746 AAAAGAATGAAAAATCGGATCAGGA 57.533 32.000 0.00 0.00 0.00 3.86
36 37 6.690194 AAGAATGAAAAATCGGATCAGGAG 57.310 37.500 0.00 0.00 0.00 3.69
37 38 4.578105 AGAATGAAAAATCGGATCAGGAGC 59.422 41.667 0.00 0.00 0.00 4.70
38 39 3.348647 TGAAAAATCGGATCAGGAGCA 57.651 42.857 0.00 0.00 0.00 4.26
39 40 3.009723 TGAAAAATCGGATCAGGAGCAC 58.990 45.455 0.00 0.00 0.00 4.40
40 41 1.656652 AAAATCGGATCAGGAGCACG 58.343 50.000 0.00 0.00 0.00 5.34
41 42 0.179073 AAATCGGATCAGGAGCACGG 60.179 55.000 0.00 0.00 0.00 4.94
42 43 1.330655 AATCGGATCAGGAGCACGGT 61.331 55.000 0.00 0.00 0.00 4.83
43 44 1.330655 ATCGGATCAGGAGCACGGTT 61.331 55.000 0.00 0.00 0.00 4.44
44 45 1.079127 CGGATCAGGAGCACGGTTT 60.079 57.895 0.00 0.00 0.00 3.27
45 46 0.673644 CGGATCAGGAGCACGGTTTT 60.674 55.000 0.00 0.00 0.00 2.43
46 47 1.534729 GGATCAGGAGCACGGTTTTT 58.465 50.000 0.00 0.00 0.00 1.94
47 48 2.706890 GGATCAGGAGCACGGTTTTTA 58.293 47.619 0.00 0.00 0.00 1.52
48 49 3.279434 GGATCAGGAGCACGGTTTTTAT 58.721 45.455 0.00 0.00 0.00 1.40
49 50 3.312697 GGATCAGGAGCACGGTTTTTATC 59.687 47.826 0.00 0.00 0.00 1.75
50 51 2.706890 TCAGGAGCACGGTTTTTATCC 58.293 47.619 0.00 0.00 0.00 2.59
51 52 2.304761 TCAGGAGCACGGTTTTTATCCT 59.695 45.455 0.00 0.00 37.66 3.24
52 53 3.081804 CAGGAGCACGGTTTTTATCCTT 58.918 45.455 0.00 0.00 34.97 3.36
53 54 3.506067 CAGGAGCACGGTTTTTATCCTTT 59.494 43.478 0.00 0.00 34.97 3.11
54 55 4.022329 CAGGAGCACGGTTTTTATCCTTTT 60.022 41.667 0.00 0.00 34.97 2.27
55 56 4.217767 AGGAGCACGGTTTTTATCCTTTTC 59.782 41.667 0.00 0.00 33.37 2.29
56 57 4.155310 AGCACGGTTTTTATCCTTTTCG 57.845 40.909 0.00 0.00 0.00 3.46
57 58 3.057806 AGCACGGTTTTTATCCTTTTCGG 60.058 43.478 0.00 0.00 0.00 4.30
66 67 2.922779 TCCTTTTCGGAGCCGTTTC 58.077 52.632 8.96 0.00 36.69 2.78
67 68 0.604511 TCCTTTTCGGAGCCGTTTCC 60.605 55.000 8.96 0.00 36.69 3.13
68 69 0.887387 CCTTTTCGGAGCCGTTTCCA 60.887 55.000 8.96 0.00 40.74 3.53
69 70 0.948678 CTTTTCGGAGCCGTTTCCAA 59.051 50.000 8.96 0.00 40.74 3.53
70 71 0.948678 TTTTCGGAGCCGTTTCCAAG 59.051 50.000 8.96 0.00 40.74 3.61
71 72 0.107081 TTTCGGAGCCGTTTCCAAGA 59.893 50.000 8.96 0.00 40.74 3.02
72 73 0.320421 TTCGGAGCCGTTTCCAAGAG 60.320 55.000 8.96 0.00 40.74 2.85
73 74 1.741770 CGGAGCCGTTTCCAAGAGG 60.742 63.158 0.00 0.00 37.05 3.69
74 75 1.375326 GGAGCCGTTTCCAAGAGGT 59.625 57.895 0.00 0.00 37.20 3.85
75 76 0.611714 GGAGCCGTTTCCAAGAGGTA 59.388 55.000 0.00 0.00 37.20 3.08
76 77 1.675116 GGAGCCGTTTCCAAGAGGTAC 60.675 57.143 0.00 0.00 37.20 3.34
77 78 0.037605 AGCCGTTTCCAAGAGGTACG 60.038 55.000 0.00 0.00 40.85 3.67
78 79 0.037975 GCCGTTTCCAAGAGGTACGA 60.038 55.000 11.40 0.00 42.44 3.43
79 80 1.706443 CCGTTTCCAAGAGGTACGAC 58.294 55.000 11.40 0.00 42.44 4.34
80 81 1.670967 CCGTTTCCAAGAGGTACGACC 60.671 57.143 11.40 0.00 42.44 4.79
81 82 1.706443 GTTTCCAAGAGGTACGACCG 58.294 55.000 0.00 0.00 44.90 4.79
82 83 1.000171 GTTTCCAAGAGGTACGACCGT 60.000 52.381 0.00 0.00 44.90 4.83
83 84 0.599558 TTCCAAGAGGTACGACCGTG 59.400 55.000 5.20 0.00 44.90 4.94
84 85 1.445582 CCAAGAGGTACGACCGTGC 60.446 63.158 5.20 3.57 44.90 5.34
89 90 2.968206 GGTACGACCGTGCCTCTT 59.032 61.111 19.75 0.00 45.50 2.85
90 91 1.445582 GGTACGACCGTGCCTCTTG 60.446 63.158 19.75 0.00 45.50 3.02
91 92 2.092882 GTACGACCGTGCCTCTTGC 61.093 63.158 5.20 0.00 41.77 4.01
92 93 3.620300 TACGACCGTGCCTCTTGCG 62.620 63.158 5.20 0.00 45.60 4.85
108 109 4.914291 CGGAAGCAAAACCGTGTC 57.086 55.556 0.00 0.00 43.53 3.67
109 110 2.317230 CGGAAGCAAAACCGTGTCT 58.683 52.632 0.00 0.00 43.53 3.41
110 111 0.041312 CGGAAGCAAAACCGTGTCTG 60.041 55.000 0.00 0.00 43.53 3.51
111 112 1.021968 GGAAGCAAAACCGTGTCTGT 58.978 50.000 0.00 0.00 0.00 3.41
112 113 1.002792 GGAAGCAAAACCGTGTCTGTC 60.003 52.381 0.00 0.00 0.00 3.51
113 114 1.668751 GAAGCAAAACCGTGTCTGTCA 59.331 47.619 0.00 0.00 0.00 3.58
114 115 1.967319 AGCAAAACCGTGTCTGTCAT 58.033 45.000 0.00 0.00 0.00 3.06
115 116 1.603802 AGCAAAACCGTGTCTGTCATG 59.396 47.619 0.00 0.00 0.00 3.07
163 164 5.570234 TTGTTTCTTACGGAAGCAAAACT 57.430 34.783 19.71 0.00 46.68 2.66
164 165 4.915704 TGTTTCTTACGGAAGCAAAACTG 58.084 39.130 19.71 0.00 41.07 3.16
165 166 4.396790 TGTTTCTTACGGAAGCAAAACTGT 59.603 37.500 19.71 0.00 41.07 3.55
166 167 4.545823 TTCTTACGGAAGCAAAACTGTG 57.454 40.909 1.22 0.00 32.21 3.66
167 168 2.289547 TCTTACGGAAGCAAAACTGTGC 59.710 45.455 1.22 0.00 45.28 4.57
168 169 0.948678 TACGGAAGCAAAACTGTGCC 59.051 50.000 0.00 0.00 46.14 5.01
169 170 0.751643 ACGGAAGCAAAACTGTGCCT 60.752 50.000 0.00 0.00 46.14 4.75
170 171 0.040067 CGGAAGCAAAACTGTGCCTC 60.040 55.000 0.00 0.00 46.14 4.70
171 172 1.322442 GGAAGCAAAACTGTGCCTCT 58.678 50.000 0.00 0.00 46.14 3.69
172 173 1.268079 GGAAGCAAAACTGTGCCTCTC 59.732 52.381 0.00 0.00 46.14 3.20
173 174 0.947244 AAGCAAAACTGTGCCTCTCG 59.053 50.000 0.00 0.00 46.14 4.04
174 175 1.081840 GCAAAACTGTGCCTCTCGC 60.082 57.895 0.00 0.00 38.66 5.03
175 176 1.205064 CAAAACTGTGCCTCTCGCG 59.795 57.895 0.00 0.00 42.08 5.87
176 177 1.069090 AAAACTGTGCCTCTCGCGA 59.931 52.632 9.26 9.26 42.08 5.87
177 178 0.531974 AAAACTGTGCCTCTCGCGAA 60.532 50.000 11.33 0.02 42.08 4.70
178 179 0.531974 AAACTGTGCCTCTCGCGAAA 60.532 50.000 11.33 0.00 42.08 3.46
179 180 0.531974 AACTGTGCCTCTCGCGAAAA 60.532 50.000 11.33 0.00 42.08 2.29
180 181 0.531974 ACTGTGCCTCTCGCGAAAAA 60.532 50.000 11.33 0.00 42.08 1.94
181 182 0.798776 CTGTGCCTCTCGCGAAAAAT 59.201 50.000 11.33 0.00 42.08 1.82
182 183 1.999735 CTGTGCCTCTCGCGAAAAATA 59.000 47.619 11.33 0.00 42.08 1.40
183 184 1.730064 TGTGCCTCTCGCGAAAAATAC 59.270 47.619 11.33 7.86 42.08 1.89
184 185 0.996462 TGCCTCTCGCGAAAAATACG 59.004 50.000 11.33 0.00 42.08 3.06
213 214 2.774439 TTCTTTTTCAAGAGGCGTGC 57.226 45.000 0.00 0.00 40.28 5.34
214 215 0.951558 TCTTTTTCAAGAGGCGTGCC 59.048 50.000 1.67 1.67 33.80 5.01
227 228 2.343758 GTGCCTCTCACGGAAGCA 59.656 61.111 0.00 0.00 38.87 3.91
228 229 1.301716 GTGCCTCTCACGGAAGCAA 60.302 57.895 0.00 0.00 42.24 3.91
229 230 0.884704 GTGCCTCTCACGGAAGCAAA 60.885 55.000 0.00 0.00 42.24 3.68
230 231 0.179032 TGCCTCTCACGGAAGCAAAA 60.179 50.000 0.00 0.00 38.32 2.44
231 232 0.238553 GCCTCTCACGGAAGCAAAAC 59.761 55.000 0.00 0.00 32.03 2.43
232 233 0.875059 CCTCTCACGGAAGCAAAACC 59.125 55.000 0.00 0.00 0.00 3.27
237 238 2.050442 CGGAAGCAAAACCGTGCC 60.050 61.111 0.00 0.00 46.14 5.01
238 239 2.551912 CGGAAGCAAAACCGTGCCT 61.552 57.895 0.00 0.00 46.14 4.75
239 240 1.285950 GGAAGCAAAACCGTGCCTC 59.714 57.895 0.00 0.00 46.14 4.70
240 241 1.172812 GGAAGCAAAACCGTGCCTCT 61.173 55.000 0.00 0.00 46.14 3.69
241 242 0.238553 GAAGCAAAACCGTGCCTCTC 59.761 55.000 0.00 0.00 46.14 3.20
242 243 1.507141 AAGCAAAACCGTGCCTCTCG 61.507 55.000 0.00 0.00 46.14 4.04
243 244 2.556287 CAAAACCGTGCCTCTCGC 59.444 61.111 0.00 0.00 38.31 5.03
298 299 3.200593 GCACTGCCATGCCTCTCG 61.201 66.667 0.00 0.00 39.86 4.04
299 300 3.200593 CACTGCCATGCCTCTCGC 61.201 66.667 0.00 0.00 38.31 5.03
300 301 4.827087 ACTGCCATGCCTCTCGCG 62.827 66.667 0.00 0.00 42.08 5.87
301 302 4.519437 CTGCCATGCCTCTCGCGA 62.519 66.667 9.26 9.26 42.08 5.87
302 303 4.081185 TGCCATGCCTCTCGCGAA 62.081 61.111 11.33 0.00 42.08 4.70
303 304 2.819595 GCCATGCCTCTCGCGAAA 60.820 61.111 11.33 0.00 42.08 3.46
304 305 2.817423 GCCATGCCTCTCGCGAAAG 61.817 63.158 11.33 6.30 42.08 2.62
318 319 2.468532 CGAAAGCAAAACCGTGTCTT 57.531 45.000 0.00 0.00 0.00 3.01
319 320 2.372350 CGAAAGCAAAACCGTGTCTTC 58.628 47.619 0.00 0.00 0.00 2.87
320 321 2.727777 GAAAGCAAAACCGTGTCTTCC 58.272 47.619 0.00 0.00 0.00 3.46
321 322 1.757682 AAGCAAAACCGTGTCTTCCA 58.242 45.000 0.00 0.00 0.00 3.53
322 323 1.757682 AGCAAAACCGTGTCTTCCAA 58.242 45.000 0.00 0.00 0.00 3.53
323 324 1.676006 AGCAAAACCGTGTCTTCCAAG 59.324 47.619 0.00 0.00 0.00 3.61
324 325 1.269051 GCAAAACCGTGTCTTCCAAGG 60.269 52.381 0.00 0.00 46.95 3.61
325 326 2.294074 CAAAACCGTGTCTTCCAAGGA 58.706 47.619 1.30 0.00 44.67 3.36
326 327 2.685897 CAAAACCGTGTCTTCCAAGGAA 59.314 45.455 0.99 0.99 44.67 3.36
327 328 2.721425 AACCGTGTCTTCCAAGGAAA 57.279 45.000 2.78 0.00 44.67 3.13
328 329 2.721425 ACCGTGTCTTCCAAGGAAAA 57.279 45.000 2.78 0.00 44.67 2.29
329 330 3.007473 ACCGTGTCTTCCAAGGAAAAA 57.993 42.857 2.78 0.00 44.67 1.94
392 393 9.672673 TTTTGTCAAAAATCAAAGATAAACCCA 57.327 25.926 8.31 0.00 35.47 4.51
393 394 9.844257 TTTGTCAAAAATCAAAGATAAACCCAT 57.156 25.926 0.00 0.00 0.00 4.00
461 462 7.933728 AAAAATTAATAAAAAGGCGACACGT 57.066 28.000 0.00 0.00 0.00 4.49
462 463 6.921332 AAATTAATAAAAAGGCGACACGTG 57.079 33.333 15.48 15.48 0.00 4.49
463 464 2.981400 AATAAAAAGGCGACACGTGG 57.019 45.000 21.57 3.72 0.00 4.94
464 465 1.886886 ATAAAAAGGCGACACGTGGT 58.113 45.000 21.57 5.35 0.00 4.16
465 466 0.938713 TAAAAAGGCGACACGTGGTG 59.061 50.000 21.57 12.68 39.75 4.17
466 467 1.720694 AAAAAGGCGACACGTGGTGG 61.721 55.000 21.57 9.40 37.94 4.61
467 468 2.879813 AAAAGGCGACACGTGGTGGT 62.880 55.000 21.57 0.00 37.94 4.16
468 469 2.030490 AAAGGCGACACGTGGTGGTA 62.030 55.000 21.57 0.00 37.94 3.25
469 470 2.430382 AAGGCGACACGTGGTGGTAG 62.430 60.000 21.57 5.25 37.94 3.18
470 471 3.110178 GCGACACGTGGTGGTAGC 61.110 66.667 21.57 11.41 37.94 3.58
471 472 2.649034 CGACACGTGGTGGTAGCT 59.351 61.111 21.57 0.00 37.94 3.32
472 473 1.733041 CGACACGTGGTGGTAGCTG 60.733 63.158 21.57 0.00 37.94 4.24
473 474 1.663739 GACACGTGGTGGTAGCTGA 59.336 57.895 21.57 0.00 37.94 4.26
474 475 0.388649 GACACGTGGTGGTAGCTGAG 60.389 60.000 21.57 0.00 37.94 3.35
475 476 0.826256 ACACGTGGTGGTAGCTGAGA 60.826 55.000 21.57 0.00 37.94 3.27
476 477 0.109086 CACGTGGTGGTAGCTGAGAG 60.109 60.000 7.95 0.00 0.00 3.20
477 478 1.153745 CGTGGTGGTAGCTGAGAGC 60.154 63.158 0.00 0.00 42.84 4.09
478 479 1.877576 CGTGGTGGTAGCTGAGAGCA 61.878 60.000 0.00 0.00 45.56 4.26
479 480 0.539051 GTGGTGGTAGCTGAGAGCAT 59.461 55.000 0.00 0.00 45.56 3.79
480 481 1.065854 GTGGTGGTAGCTGAGAGCATT 60.066 52.381 0.00 0.00 45.56 3.56
481 482 1.208052 TGGTGGTAGCTGAGAGCATTC 59.792 52.381 0.00 0.00 45.56 2.67
482 483 1.474143 GGTGGTAGCTGAGAGCATTCC 60.474 57.143 0.00 0.00 45.56 3.01
483 484 1.208052 GTGGTAGCTGAGAGCATTCCA 59.792 52.381 0.00 1.02 45.56 3.53
484 485 1.908619 TGGTAGCTGAGAGCATTCCAA 59.091 47.619 0.00 0.00 45.56 3.53
485 486 2.507058 TGGTAGCTGAGAGCATTCCAAT 59.493 45.455 0.00 0.00 45.56 3.16
486 487 3.054139 TGGTAGCTGAGAGCATTCCAATT 60.054 43.478 0.00 0.00 45.56 2.32
487 488 3.563390 GGTAGCTGAGAGCATTCCAATTC 59.437 47.826 0.00 0.00 45.56 2.17
488 489 3.648507 AGCTGAGAGCATTCCAATTCT 57.351 42.857 0.00 0.00 45.56 2.40
489 490 3.965694 AGCTGAGAGCATTCCAATTCTT 58.034 40.909 0.00 0.00 45.56 2.52
490 491 3.695060 AGCTGAGAGCATTCCAATTCTTG 59.305 43.478 0.00 0.00 45.56 3.02
491 492 3.181489 GCTGAGAGCATTCCAATTCTTGG 60.181 47.826 0.00 0.00 46.12 3.61
492 493 6.230313 GCTGAGAGCATTCCAATTCTTGGG 62.230 50.000 6.09 0.00 45.41 4.12
500 501 3.197664 CAATTCTTGGGGAGGCTCC 57.802 57.895 25.80 25.80 35.23 4.70
501 502 0.749454 CAATTCTTGGGGAGGCTCCG 60.749 60.000 26.54 13.32 37.43 4.63
502 503 0.914417 AATTCTTGGGGAGGCTCCGA 60.914 55.000 26.54 15.49 37.43 4.55
503 504 0.914417 ATTCTTGGGGAGGCTCCGAA 60.914 55.000 26.54 22.58 37.43 4.30
504 505 1.553690 TTCTTGGGGAGGCTCCGAAG 61.554 60.000 26.74 26.74 41.91 3.79
524 525 2.911484 GGAGTGCTCCTGGATTAGTTG 58.089 52.381 10.80 0.00 46.16 3.16
525 526 2.284190 GAGTGCTCCTGGATTAGTTGC 58.716 52.381 0.00 0.00 0.00 4.17
526 527 1.912043 AGTGCTCCTGGATTAGTTGCT 59.088 47.619 0.00 0.00 0.00 3.91
527 528 2.093235 AGTGCTCCTGGATTAGTTGCTC 60.093 50.000 0.00 0.00 0.00 4.26
528 529 2.093235 GTGCTCCTGGATTAGTTGCTCT 60.093 50.000 0.00 0.00 0.00 4.09
529 530 2.169352 TGCTCCTGGATTAGTTGCTCTC 59.831 50.000 0.00 0.00 0.00 3.20
530 531 2.801342 GCTCCTGGATTAGTTGCTCTCG 60.801 54.545 0.00 0.00 0.00 4.04
541 542 2.621055 AGTTGCTCTCGGAGTATAGCTG 59.379 50.000 15.54 0.00 35.95 4.24
546 547 0.945099 CTCGGAGTATAGCTGTCGCA 59.055 55.000 0.00 0.00 39.10 5.10
551 552 4.217767 TCGGAGTATAGCTGTCGCAATAAT 59.782 41.667 0.00 0.00 39.10 1.28
553 554 5.470368 GGAGTATAGCTGTCGCAATAATCA 58.530 41.667 0.00 0.00 39.10 2.57
565 567 7.312154 TGTCGCAATAATCAAACATAGCTTTT 58.688 30.769 0.00 0.00 0.00 2.27
588 590 1.209747 GGGAGGACGCTAAAATCCTGT 59.790 52.381 0.00 0.00 45.74 4.00
641 643 1.918262 TCCTCTTCATCCCAGCAACAT 59.082 47.619 0.00 0.00 0.00 2.71
656 658 3.632145 AGCAACATTGATCCCGTTAATCC 59.368 43.478 0.00 0.00 0.00 3.01
658 660 3.553828 ACATTGATCCCGTTAATCCGT 57.446 42.857 0.00 0.00 0.00 4.69
681 683 2.079925 GGCTGTCTCTTCCAATCACAC 58.920 52.381 0.00 0.00 0.00 3.82
689 691 3.743521 TCTTCCAATCACACAGTTCCAG 58.256 45.455 0.00 0.00 0.00 3.86
698 700 1.344763 ACACAGTTCCAGCAGACTACC 59.655 52.381 0.00 0.00 0.00 3.18
730 732 2.126417 CTCCTGCACTGTGCTTGCAC 62.126 60.000 30.43 17.73 45.06 4.57
807 811 2.516930 CCCAAAGGCGCCGATCAT 60.517 61.111 23.20 0.00 0.00 2.45
808 812 1.227823 CCCAAAGGCGCCGATCATA 60.228 57.895 23.20 0.00 0.00 2.15
809 813 0.606401 CCCAAAGGCGCCGATCATAT 60.606 55.000 23.20 0.00 0.00 1.78
810 814 0.798776 CCAAAGGCGCCGATCATATC 59.201 55.000 23.20 0.00 0.00 1.63
811 815 1.511850 CAAAGGCGCCGATCATATCA 58.488 50.000 23.20 0.00 0.00 2.15
815 819 1.002366 GGCGCCGATCATATCATGAC 58.998 55.000 12.58 0.00 43.01 3.06
841 845 2.429610 CCCTTTCAATCAATCAGCCCAG 59.570 50.000 0.00 0.00 0.00 4.45
949 987 8.002107 CACAATATCATATTTTCGTACCGTGTC 58.998 37.037 0.00 0.00 0.00 3.67
1123 1175 2.811542 GAACCTCAGGACCAGCTGCC 62.812 65.000 8.66 5.06 0.00 4.85
1222 1274 9.491675 TCTACGTCTGATCTTACCTTATCTTAG 57.508 37.037 0.00 0.00 0.00 2.18
1246 1302 1.402968 CTATGTGTGCTTCATGGTGCC 59.597 52.381 8.05 2.00 0.00 5.01
1282 1342 6.093404 TCTGCTTTTCTTATGTACTCGAGTG 58.907 40.000 28.12 10.14 0.00 3.51
1300 1360 3.131396 AGTGTTCGAGCTTGGTTTAGTG 58.869 45.455 0.00 0.00 0.00 2.74
1330 1390 1.693606 TGCTCCGAGGATGCATGATTA 59.306 47.619 2.46 0.00 0.00 1.75
1409 1470 5.692613 TGAAACGGTGATTATTTTTCGGT 57.307 34.783 0.00 0.00 0.00 4.69
1430 1491 0.170339 GGATGGTTTTCTTTCGGCCG 59.830 55.000 22.12 22.12 0.00 6.13
1518 1582 2.436646 CCCATTTCGTCCGCTGCT 60.437 61.111 0.00 0.00 0.00 4.24
1549 1613 1.735198 CGGCGCGGACAGAAAAGTA 60.735 57.895 9.72 0.00 0.00 2.24
1553 1617 1.683790 CGCGGACAGAAAAGTAGGCG 61.684 60.000 0.00 0.00 37.09 5.52
1556 1620 1.079503 GGACAGAAAAGTAGGCGCAG 58.920 55.000 10.83 0.00 0.00 5.18
1557 1621 1.608283 GGACAGAAAAGTAGGCGCAGT 60.608 52.381 10.83 0.00 0.00 4.40
1601 1666 2.587679 CGTTTTTCGTCCGCGGACA 61.588 57.895 46.26 33.80 44.77 4.02
1625 1690 3.582208 CCCATTCCTGACCCATTTTTGAA 59.418 43.478 0.00 0.00 0.00 2.69
1629 1694 2.158593 TCCTGACCCATTTTTGAACCGA 60.159 45.455 0.00 0.00 0.00 4.69
1640 1705 1.218763 TTGAACCGAATTTGCGTCGA 58.781 45.000 0.00 0.00 41.02 4.20
1885 1999 2.100631 CGCGACCAAGCCGAAGAAT 61.101 57.895 0.00 0.00 0.00 2.40
1939 2053 1.990060 CAAGAGGAAGGGCCGGAGA 60.990 63.158 5.05 0.00 43.43 3.71
2053 2171 0.978146 AAGGGAGGCGCTCTACATGT 60.978 55.000 7.64 2.69 0.00 3.21
2058 2176 1.409427 GAGGCGCTCTACATGTTAGGT 59.591 52.381 7.64 0.00 0.00 3.08
2121 2239 4.715523 GCCAGCTGTAACGCCCCA 62.716 66.667 13.81 0.00 0.00 4.96
2122 2240 2.436646 CCAGCTGTAACGCCCCAG 60.437 66.667 13.81 0.00 0.00 4.45
2123 2241 2.662596 CAGCTGTAACGCCCCAGA 59.337 61.111 5.25 0.00 0.00 3.86
2124 2242 1.221840 CAGCTGTAACGCCCCAGAT 59.778 57.895 5.25 0.00 0.00 2.90
2125 2243 1.091771 CAGCTGTAACGCCCCAGATG 61.092 60.000 5.25 0.63 38.56 2.90
2126 2244 1.078426 GCTGTAACGCCCCAGATGT 60.078 57.895 0.49 0.00 0.00 3.06
2127 2245 0.177141 GCTGTAACGCCCCAGATGTA 59.823 55.000 0.49 0.00 0.00 2.29
2128 2246 1.406341 GCTGTAACGCCCCAGATGTAA 60.406 52.381 0.49 0.00 0.00 2.41
2129 2247 2.277084 CTGTAACGCCCCAGATGTAAC 58.723 52.381 0.00 0.00 0.00 2.50
2130 2248 1.903860 TGTAACGCCCCAGATGTAACT 59.096 47.619 0.00 0.00 0.00 2.24
2131 2249 2.303600 TGTAACGCCCCAGATGTAACTT 59.696 45.455 0.00 0.00 0.00 2.66
2132 2250 2.579410 AACGCCCCAGATGTAACTTT 57.421 45.000 0.00 0.00 0.00 2.66
2133 2251 2.109425 ACGCCCCAGATGTAACTTTC 57.891 50.000 0.00 0.00 0.00 2.62
2134 2252 1.339727 ACGCCCCAGATGTAACTTTCC 60.340 52.381 0.00 0.00 0.00 3.13
2135 2253 1.763968 GCCCCAGATGTAACTTTCCC 58.236 55.000 0.00 0.00 0.00 3.97
2136 2254 1.685180 GCCCCAGATGTAACTTTCCCC 60.685 57.143 0.00 0.00 0.00 4.81
2137 2255 1.638589 CCCCAGATGTAACTTTCCCCA 59.361 52.381 0.00 0.00 0.00 4.96
2138 2256 2.244769 CCCCAGATGTAACTTTCCCCAT 59.755 50.000 0.00 0.00 0.00 4.00
2139 2257 3.309848 CCCCAGATGTAACTTTCCCCATT 60.310 47.826 0.00 0.00 0.00 3.16
2140 2258 4.352893 CCCAGATGTAACTTTCCCCATTT 58.647 43.478 0.00 0.00 0.00 2.32
2141 2259 4.160252 CCCAGATGTAACTTTCCCCATTTG 59.840 45.833 0.00 0.00 0.00 2.32
2142 2260 4.772100 CCAGATGTAACTTTCCCCATTTGT 59.228 41.667 0.00 0.00 0.00 2.83
2143 2261 5.949354 CCAGATGTAACTTTCCCCATTTGTA 59.051 40.000 0.00 0.00 0.00 2.41
2144 2262 6.127730 CCAGATGTAACTTTCCCCATTTGTAC 60.128 42.308 0.00 0.00 0.00 2.90
2145 2263 6.659242 CAGATGTAACTTTCCCCATTTGTACT 59.341 38.462 0.00 0.00 0.00 2.73
2146 2264 6.884836 AGATGTAACTTTCCCCATTTGTACTC 59.115 38.462 0.00 0.00 0.00 2.59
2147 2265 5.318630 TGTAACTTTCCCCATTTGTACTCC 58.681 41.667 0.00 0.00 0.00 3.85
2148 2266 4.463050 AACTTTCCCCATTTGTACTCCA 57.537 40.909 0.00 0.00 0.00 3.86
2149 2267 4.463050 ACTTTCCCCATTTGTACTCCAA 57.537 40.909 0.00 0.00 0.00 3.53
2150 2268 4.149598 ACTTTCCCCATTTGTACTCCAAC 58.850 43.478 0.00 0.00 31.20 3.77
2151 2269 4.141018 ACTTTCCCCATTTGTACTCCAACT 60.141 41.667 0.00 0.00 31.20 3.16
2152 2270 3.713826 TCCCCATTTGTACTCCAACTC 57.286 47.619 0.00 0.00 31.20 3.01
2153 2271 3.256704 TCCCCATTTGTACTCCAACTCT 58.743 45.455 0.00 0.00 31.20 3.24
2154 2272 3.655777 TCCCCATTTGTACTCCAACTCTT 59.344 43.478 0.00 0.00 31.20 2.85
2155 2273 3.758554 CCCCATTTGTACTCCAACTCTTG 59.241 47.826 0.00 0.00 31.20 3.02
2156 2274 3.191371 CCCATTTGTACTCCAACTCTTGC 59.809 47.826 0.00 0.00 31.20 4.01
2157 2275 3.191371 CCATTTGTACTCCAACTCTTGCC 59.809 47.826 0.00 0.00 31.20 4.52
2158 2276 2.163818 TTGTACTCCAACTCTTGCCG 57.836 50.000 0.00 0.00 0.00 5.69
2159 2277 1.045407 TGTACTCCAACTCTTGCCGT 58.955 50.000 0.00 0.00 0.00 5.68
2160 2278 1.414919 TGTACTCCAACTCTTGCCGTT 59.585 47.619 0.00 0.00 0.00 4.44
2161 2279 2.158871 TGTACTCCAACTCTTGCCGTTT 60.159 45.455 0.00 0.00 0.00 3.60
2162 2280 1.594331 ACTCCAACTCTTGCCGTTTC 58.406 50.000 0.00 0.00 0.00 2.78
2163 2281 0.875059 CTCCAACTCTTGCCGTTTCC 59.125 55.000 0.00 0.00 0.00 3.13
2164 2282 0.882927 TCCAACTCTTGCCGTTTCCG 60.883 55.000 0.00 0.00 0.00 4.30
2179 2297 5.789710 CGTTTCCGGTGTCAAGTTATATT 57.210 39.130 0.00 0.00 0.00 1.28
2180 2298 6.173191 CGTTTCCGGTGTCAAGTTATATTT 57.827 37.500 0.00 0.00 0.00 1.40
2181 2299 7.293402 CGTTTCCGGTGTCAAGTTATATTTA 57.707 36.000 0.00 0.00 0.00 1.40
2182 2300 7.912383 CGTTTCCGGTGTCAAGTTATATTTAT 58.088 34.615 0.00 0.00 0.00 1.40
2183 2301 8.392612 CGTTTCCGGTGTCAAGTTATATTTATT 58.607 33.333 0.00 0.00 0.00 1.40
2186 2304 9.675464 TTCCGGTGTCAAGTTATATTTATTTCT 57.325 29.630 0.00 0.00 0.00 2.52
2187 2305 9.321562 TCCGGTGTCAAGTTATATTTATTTCTC 57.678 33.333 0.00 0.00 0.00 2.87
2188 2306 8.273557 CCGGTGTCAAGTTATATTTATTTCTCG 58.726 37.037 0.00 0.00 0.00 4.04
2189 2307 8.273557 CGGTGTCAAGTTATATTTATTTCTCGG 58.726 37.037 0.00 0.00 0.00 4.63
2190 2308 8.557029 GGTGTCAAGTTATATTTATTTCTCGGG 58.443 37.037 0.00 0.00 0.00 5.14
2191 2309 9.106070 GTGTCAAGTTATATTTATTTCTCGGGT 57.894 33.333 0.00 0.00 0.00 5.28
2192 2310 9.675464 TGTCAAGTTATATTTATTTCTCGGGTT 57.325 29.630 0.00 0.00 0.00 4.11
2194 2312 9.037737 TCAAGTTATATTTATTTCTCGGGTTCG 57.962 33.333 0.00 0.00 37.82 3.95
2195 2313 7.958053 AGTTATATTTATTTCTCGGGTTCGG 57.042 36.000 0.00 0.00 36.95 4.30
2196 2314 6.932960 AGTTATATTTATTTCTCGGGTTCGGG 59.067 38.462 0.00 0.00 38.44 5.14
2197 2315 3.639672 ATTTATTTCTCGGGTTCGGGT 57.360 42.857 0.00 0.00 38.21 5.28
2198 2316 2.678471 TTATTTCTCGGGTTCGGGTC 57.322 50.000 0.00 0.00 38.21 4.46
2199 2317 0.826062 TATTTCTCGGGTTCGGGTCC 59.174 55.000 0.00 0.00 38.21 4.46
2200 2318 0.908180 ATTTCTCGGGTTCGGGTCCT 60.908 55.000 0.00 0.00 38.21 3.85
2201 2319 1.123246 TTTCTCGGGTTCGGGTCCTT 61.123 55.000 0.00 0.00 38.21 3.36
2202 2320 1.823169 TTCTCGGGTTCGGGTCCTTG 61.823 60.000 0.00 0.00 38.21 3.61
2203 2321 2.524887 TCGGGTTCGGGTCCTTGT 60.525 61.111 0.00 0.00 36.95 3.16
2204 2322 2.047560 CGGGTTCGGGTCCTTGTC 60.048 66.667 0.00 0.00 0.00 3.18
2205 2323 2.580601 CGGGTTCGGGTCCTTGTCT 61.581 63.158 0.00 0.00 0.00 3.41
2206 2324 1.295746 GGGTTCGGGTCCTTGTCTC 59.704 63.158 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 7.895759 TCCTGATCCGATTTTTCATTCTTTTT 58.104 30.769 0.00 0.00 0.00 1.94
11 12 7.466746 TCCTGATCCGATTTTTCATTCTTTT 57.533 32.000 0.00 0.00 0.00 2.27
12 13 6.405176 GCTCCTGATCCGATTTTTCATTCTTT 60.405 38.462 0.00 0.00 0.00 2.52
13 14 5.067023 GCTCCTGATCCGATTTTTCATTCTT 59.933 40.000 0.00 0.00 0.00 2.52
14 15 4.578105 GCTCCTGATCCGATTTTTCATTCT 59.422 41.667 0.00 0.00 0.00 2.40
15 16 4.336433 TGCTCCTGATCCGATTTTTCATTC 59.664 41.667 0.00 0.00 0.00 2.67
16 17 4.096984 GTGCTCCTGATCCGATTTTTCATT 59.903 41.667 0.00 0.00 0.00 2.57
17 18 3.629398 GTGCTCCTGATCCGATTTTTCAT 59.371 43.478 0.00 0.00 0.00 2.57
18 19 3.009723 GTGCTCCTGATCCGATTTTTCA 58.990 45.455 0.00 0.00 0.00 2.69
19 20 2.030946 CGTGCTCCTGATCCGATTTTTC 59.969 50.000 0.00 0.00 0.00 2.29
20 21 2.009774 CGTGCTCCTGATCCGATTTTT 58.990 47.619 0.00 0.00 0.00 1.94
21 22 1.656652 CGTGCTCCTGATCCGATTTT 58.343 50.000 0.00 0.00 0.00 1.82
22 23 0.179073 CCGTGCTCCTGATCCGATTT 60.179 55.000 0.00 0.00 0.00 2.17
23 24 1.330655 ACCGTGCTCCTGATCCGATT 61.331 55.000 0.00 0.00 0.00 3.34
24 25 1.330655 AACCGTGCTCCTGATCCGAT 61.331 55.000 0.00 0.00 0.00 4.18
25 26 1.541310 AAACCGTGCTCCTGATCCGA 61.541 55.000 0.00 0.00 0.00 4.55
26 27 0.673644 AAAACCGTGCTCCTGATCCG 60.674 55.000 0.00 0.00 0.00 4.18
27 28 1.534729 AAAAACCGTGCTCCTGATCC 58.465 50.000 0.00 0.00 0.00 3.36
28 29 3.312697 GGATAAAAACCGTGCTCCTGATC 59.687 47.826 0.00 0.00 0.00 2.92
29 30 3.054361 AGGATAAAAACCGTGCTCCTGAT 60.054 43.478 0.00 0.00 32.01 2.90
30 31 2.304761 AGGATAAAAACCGTGCTCCTGA 59.695 45.455 0.00 0.00 32.01 3.86
31 32 2.711542 AGGATAAAAACCGTGCTCCTG 58.288 47.619 0.00 0.00 32.01 3.86
32 33 3.434940 AAGGATAAAAACCGTGCTCCT 57.565 42.857 0.00 0.00 34.64 3.69
33 34 4.482386 GAAAAGGATAAAAACCGTGCTCC 58.518 43.478 0.00 0.00 0.00 4.70
34 35 4.156182 CGAAAAGGATAAAAACCGTGCTC 58.844 43.478 0.00 0.00 0.00 4.26
35 36 3.057806 CCGAAAAGGATAAAAACCGTGCT 60.058 43.478 0.00 0.00 45.00 4.40
36 37 3.058085 TCCGAAAAGGATAAAAACCGTGC 60.058 43.478 0.00 0.00 45.98 5.34
37 38 4.752661 TCCGAAAAGGATAAAAACCGTG 57.247 40.909 0.00 0.00 45.98 4.94
49 50 0.887387 TGGAAACGGCTCCGAAAAGG 60.887 55.000 15.95 0.00 42.83 3.11
50 51 0.948678 TTGGAAACGGCTCCGAAAAG 59.051 50.000 15.95 0.00 42.83 2.27
51 52 0.948678 CTTGGAAACGGCTCCGAAAA 59.051 50.000 15.95 1.38 42.83 2.29
52 53 0.107081 TCTTGGAAACGGCTCCGAAA 59.893 50.000 15.95 1.06 42.83 3.46
53 54 0.320421 CTCTTGGAAACGGCTCCGAA 60.320 55.000 15.95 0.00 42.83 4.30
54 55 1.292223 CTCTTGGAAACGGCTCCGA 59.708 57.895 15.95 0.00 42.83 4.55
55 56 1.741770 CCTCTTGGAAACGGCTCCG 60.742 63.158 6.79 6.79 38.44 4.63
56 57 0.611714 TACCTCTTGGAAACGGCTCC 59.388 55.000 0.00 0.00 37.04 4.70
57 58 1.723220 GTACCTCTTGGAAACGGCTC 58.277 55.000 0.00 0.00 37.04 4.70
58 59 0.037605 CGTACCTCTTGGAAACGGCT 60.038 55.000 0.00 0.00 40.13 5.52
59 60 0.037975 TCGTACCTCTTGGAAACGGC 60.038 55.000 12.03 0.00 42.23 5.68
60 61 1.670967 GGTCGTACCTCTTGGAAACGG 60.671 57.143 12.03 0.00 42.23 4.44
61 62 1.706443 GGTCGTACCTCTTGGAAACG 58.294 55.000 0.00 0.00 42.81 3.60
62 63 1.000171 ACGGTCGTACCTCTTGGAAAC 60.000 52.381 0.00 0.00 35.66 2.78
63 64 1.000060 CACGGTCGTACCTCTTGGAAA 60.000 52.381 0.00 0.00 35.66 3.13
64 65 0.599558 CACGGTCGTACCTCTTGGAA 59.400 55.000 0.00 0.00 35.66 3.53
65 66 1.870055 GCACGGTCGTACCTCTTGGA 61.870 60.000 0.00 0.00 35.66 3.53
66 67 1.445582 GCACGGTCGTACCTCTTGG 60.446 63.158 0.00 0.00 35.66 3.61
67 68 1.445582 GGCACGGTCGTACCTCTTG 60.446 63.158 5.58 0.00 35.66 3.02
68 69 1.605738 AGGCACGGTCGTACCTCTT 60.606 57.895 9.29 0.00 37.30 2.85
69 70 2.035312 AGGCACGGTCGTACCTCT 59.965 61.111 9.29 0.00 37.30 3.69
71 72 1.605738 AAGAGGCACGGTCGTACCT 60.606 57.895 14.38 14.38 44.06 3.08
72 73 1.445582 CAAGAGGCACGGTCGTACC 60.446 63.158 4.70 4.70 34.05 3.34
73 74 2.092882 GCAAGAGGCACGGTCGTAC 61.093 63.158 0.00 0.00 43.97 3.67
74 75 2.260434 GCAAGAGGCACGGTCGTA 59.740 61.111 0.00 0.00 43.97 3.43
77 78 3.876589 TTCCGCAAGAGGCACGGTC 62.877 63.158 0.00 0.00 46.92 4.79
78 79 3.883744 CTTCCGCAAGAGGCACGGT 62.884 63.158 0.00 0.00 46.92 4.83
80 81 3.793144 GCTTCCGCAAGAGGCACG 61.793 66.667 0.00 0.00 46.54 5.34
92 93 1.002792 GACAGACACGGTTTTGCTTCC 60.003 52.381 0.00 0.00 0.00 3.46
93 94 1.668751 TGACAGACACGGTTTTGCTTC 59.331 47.619 0.00 0.00 0.00 3.86
94 95 1.745232 TGACAGACACGGTTTTGCTT 58.255 45.000 0.00 0.00 0.00 3.91
95 96 1.603802 CATGACAGACACGGTTTTGCT 59.396 47.619 0.00 0.00 0.00 3.91
96 97 1.334960 CCATGACAGACACGGTTTTGC 60.335 52.381 0.00 0.00 0.00 3.68
97 98 2.217750 TCCATGACAGACACGGTTTTG 58.782 47.619 0.00 0.00 33.16 2.44
98 99 2.631160 TCCATGACAGACACGGTTTT 57.369 45.000 0.00 0.00 33.16 2.43
99 100 2.631160 TTCCATGACAGACACGGTTT 57.369 45.000 0.00 0.00 33.16 3.27
100 101 2.631160 TTTCCATGACAGACACGGTT 57.369 45.000 0.00 0.00 33.16 4.44
101 102 2.631160 TTTTCCATGACAGACACGGT 57.369 45.000 0.00 0.00 33.16 4.83
140 141 5.802956 CAGTTTTGCTTCCGTAAGAAACAAA 59.197 36.000 7.48 3.62 44.71 2.83
141 142 5.106078 ACAGTTTTGCTTCCGTAAGAAACAA 60.106 36.000 7.48 0.00 38.48 2.83
142 143 4.396790 ACAGTTTTGCTTCCGTAAGAAACA 59.603 37.500 7.48 0.00 43.02 2.83
143 144 4.733405 CACAGTTTTGCTTCCGTAAGAAAC 59.267 41.667 0.00 0.00 43.02 2.78
144 145 4.732355 GCACAGTTTTGCTTCCGTAAGAAA 60.732 41.667 0.00 0.00 39.59 2.52
145 146 3.242936 GCACAGTTTTGCTTCCGTAAGAA 60.243 43.478 0.00 0.00 39.59 2.52
146 147 2.289547 GCACAGTTTTGCTTCCGTAAGA 59.710 45.455 0.00 0.00 39.59 2.10
147 148 2.604614 GGCACAGTTTTGCTTCCGTAAG 60.605 50.000 0.00 0.00 42.56 2.34
148 149 1.335496 GGCACAGTTTTGCTTCCGTAA 59.665 47.619 0.00 0.00 42.56 3.18
149 150 0.948678 GGCACAGTTTTGCTTCCGTA 59.051 50.000 0.00 0.00 42.56 4.02
150 151 0.751643 AGGCACAGTTTTGCTTCCGT 60.752 50.000 0.00 0.00 42.56 4.69
151 152 0.040067 GAGGCACAGTTTTGCTTCCG 60.040 55.000 0.00 0.00 41.54 4.30
152 153 1.268079 GAGAGGCACAGTTTTGCTTCC 59.732 52.381 3.83 0.00 46.96 3.46
153 154 1.069636 CGAGAGGCACAGTTTTGCTTC 60.070 52.381 0.00 0.00 46.31 3.86
154 155 0.947244 CGAGAGGCACAGTTTTGCTT 59.053 50.000 0.00 0.00 42.56 3.91
155 156 1.510480 GCGAGAGGCACAGTTTTGCT 61.510 55.000 0.00 0.00 42.56 3.91
156 157 1.081840 GCGAGAGGCACAGTTTTGC 60.082 57.895 0.00 0.00 42.87 3.68
157 158 1.205064 CGCGAGAGGCACAGTTTTG 59.795 57.895 0.00 0.00 43.84 2.44
158 159 0.531974 TTCGCGAGAGGCACAGTTTT 60.532 50.000 9.59 0.00 43.84 2.43
159 160 0.531974 TTTCGCGAGAGGCACAGTTT 60.532 50.000 9.59 0.00 43.84 2.66
160 161 0.531974 TTTTCGCGAGAGGCACAGTT 60.532 50.000 9.59 0.00 43.84 3.16
161 162 0.531974 TTTTTCGCGAGAGGCACAGT 60.532 50.000 9.59 0.00 43.84 3.55
162 163 0.798776 ATTTTTCGCGAGAGGCACAG 59.201 50.000 9.59 0.00 43.84 3.66
163 164 1.730064 GTATTTTTCGCGAGAGGCACA 59.270 47.619 9.59 0.00 43.84 4.57
164 165 1.266891 CGTATTTTTCGCGAGAGGCAC 60.267 52.381 9.59 5.56 43.84 5.01
165 166 0.996462 CGTATTTTTCGCGAGAGGCA 59.004 50.000 9.59 0.00 43.84 4.75
166 167 0.315140 GCGTATTTTTCGCGAGAGGC 60.315 55.000 9.59 7.37 43.94 4.70
167 168 3.781212 GCGTATTTTTCGCGAGAGG 57.219 52.632 9.59 0.90 43.94 3.69
191 192 3.862845 GCACGCCTCTTGAAAAAGAAAAA 59.137 39.130 0.00 0.00 0.00 1.94
192 193 3.443976 GCACGCCTCTTGAAAAAGAAAA 58.556 40.909 0.00 0.00 0.00 2.29
193 194 2.223711 GGCACGCCTCTTGAAAAAGAAA 60.224 45.455 0.00 0.00 0.00 2.52
194 195 1.336755 GGCACGCCTCTTGAAAAAGAA 59.663 47.619 0.00 0.00 0.00 2.52
195 196 0.951558 GGCACGCCTCTTGAAAAAGA 59.048 50.000 0.00 0.00 0.00 2.52
196 197 0.954452 AGGCACGCCTCTTGAAAAAG 59.046 50.000 4.27 0.00 44.43 2.27
197 198 3.109847 AGGCACGCCTCTTGAAAAA 57.890 47.368 4.27 0.00 44.43 1.94
198 199 4.898607 AGGCACGCCTCTTGAAAA 57.101 50.000 4.27 0.00 44.43 2.29
213 214 0.875059 GGTTTTGCTTCCGTGAGAGG 59.125 55.000 0.00 0.00 0.00 3.69
214 215 0.512952 CGGTTTTGCTTCCGTGAGAG 59.487 55.000 0.00 0.00 41.58 3.20
215 216 2.612200 CGGTTTTGCTTCCGTGAGA 58.388 52.632 0.00 0.00 41.58 3.27
221 222 1.172812 AGAGGCACGGTTTTGCTTCC 61.173 55.000 4.54 0.00 46.96 3.46
222 223 0.238553 GAGAGGCACGGTTTTGCTTC 59.761 55.000 0.28 0.28 46.31 3.86
223 224 1.507141 CGAGAGGCACGGTTTTGCTT 61.507 55.000 0.00 0.00 42.56 3.91
224 225 1.961277 CGAGAGGCACGGTTTTGCT 60.961 57.895 0.00 0.00 42.56 3.91
225 226 2.556287 CGAGAGGCACGGTTTTGC 59.444 61.111 0.00 0.00 42.18 3.68
226 227 2.556287 GCGAGAGGCACGGTTTTG 59.444 61.111 0.00 0.00 42.87 2.44
227 228 3.041940 CGCGAGAGGCACGGTTTT 61.042 61.111 0.00 0.00 43.84 2.43
264 265 3.253188 CAGTGCCTCTCGGAAATGAAAAA 59.747 43.478 0.00 0.00 35.91 1.94
265 266 2.813754 CAGTGCCTCTCGGAAATGAAAA 59.186 45.455 0.00 0.00 35.91 2.29
266 267 2.426522 CAGTGCCTCTCGGAAATGAAA 58.573 47.619 0.00 0.00 35.91 2.69
267 268 1.945819 GCAGTGCCTCTCGGAAATGAA 60.946 52.381 2.85 0.00 35.91 2.57
268 269 0.391661 GCAGTGCCTCTCGGAAATGA 60.392 55.000 2.85 0.00 35.91 2.57
269 270 1.372087 GGCAGTGCCTCTCGGAAATG 61.372 60.000 27.48 0.00 46.69 2.32
270 271 1.078143 GGCAGTGCCTCTCGGAAAT 60.078 57.895 27.48 0.00 46.69 2.17
271 272 2.347490 GGCAGTGCCTCTCGGAAA 59.653 61.111 27.48 0.00 46.69 3.13
281 282 3.200593 CGAGAGGCATGGCAGTGC 61.201 66.667 22.64 6.55 44.31 4.40
282 283 3.200593 GCGAGAGGCATGGCAGTG 61.201 66.667 22.64 9.09 42.87 3.66
283 284 4.827087 CGCGAGAGGCATGGCAGT 62.827 66.667 22.64 7.63 43.84 4.40
284 285 4.519437 TCGCGAGAGGCATGGCAG 62.519 66.667 22.64 10.51 43.84 4.85
285 286 3.604129 TTTCGCGAGAGGCATGGCA 62.604 57.895 22.64 0.00 43.84 4.92
286 287 2.817423 CTTTCGCGAGAGGCATGGC 61.817 63.158 18.35 12.14 43.84 4.40
287 288 2.817423 GCTTTCGCGAGAGGCATGG 61.817 63.158 25.84 3.00 43.84 3.66
288 289 1.638388 TTGCTTTCGCGAGAGGCATG 61.638 55.000 25.84 7.44 45.05 4.06
289 290 0.955428 TTTGCTTTCGCGAGAGGCAT 60.955 50.000 25.84 0.00 45.05 4.40
290 291 1.163420 TTTTGCTTTCGCGAGAGGCA 61.163 50.000 25.84 23.78 44.45 4.75
291 292 0.726118 GTTTTGCTTTCGCGAGAGGC 60.726 55.000 25.84 21.76 43.69 4.70
292 293 0.110192 GGTTTTGCTTTCGCGAGAGG 60.110 55.000 25.84 13.55 43.69 3.69
293 294 0.451135 CGGTTTTGCTTTCGCGAGAG 60.451 55.000 21.42 21.42 43.69 3.20
294 295 1.155424 ACGGTTTTGCTTTCGCGAGA 61.155 50.000 9.59 3.35 39.65 4.04
295 296 0.991770 CACGGTTTTGCTTTCGCGAG 60.992 55.000 9.59 0.00 39.65 5.03
296 297 1.010574 CACGGTTTTGCTTTCGCGA 60.011 52.632 3.71 3.71 39.65 5.87
297 298 1.259544 GACACGGTTTTGCTTTCGCG 61.260 55.000 0.00 0.00 39.65 5.87
298 299 0.028902 AGACACGGTTTTGCTTTCGC 59.971 50.000 0.00 0.00 0.00 4.70
299 300 2.372350 GAAGACACGGTTTTGCTTTCG 58.628 47.619 0.00 0.00 0.00 3.46
300 301 2.098443 TGGAAGACACGGTTTTGCTTTC 59.902 45.455 0.00 0.00 0.00 2.62
301 302 2.096248 TGGAAGACACGGTTTTGCTTT 58.904 42.857 0.00 0.00 0.00 3.51
302 303 1.757682 TGGAAGACACGGTTTTGCTT 58.242 45.000 0.00 0.00 0.00 3.91
303 304 1.676006 CTTGGAAGACACGGTTTTGCT 59.324 47.619 0.00 0.00 0.00 3.91
304 305 1.269051 CCTTGGAAGACACGGTTTTGC 60.269 52.381 0.00 0.00 33.96 3.68
305 306 2.294074 TCCTTGGAAGACACGGTTTTG 58.706 47.619 0.00 0.00 39.43 2.44
306 307 2.721425 TCCTTGGAAGACACGGTTTT 57.279 45.000 0.00 0.00 39.43 2.43
307 308 2.721425 TTCCTTGGAAGACACGGTTT 57.279 45.000 0.00 0.00 39.43 3.27
308 309 2.721425 TTTCCTTGGAAGACACGGTT 57.279 45.000 2.16 0.00 39.43 4.44
309 310 2.721425 TTTTCCTTGGAAGACACGGT 57.279 45.000 2.16 0.00 39.43 4.83
366 367 9.672673 TGGGTTTATCTTTGATTTTTGACAAAA 57.327 25.926 9.30 9.30 35.95 2.44
367 368 9.844257 ATGGGTTTATCTTTGATTTTTGACAAA 57.156 25.926 0.00 0.00 35.26 2.83
437 438 7.095982 CCACGTGTCGCCTTTTTATTAATTTTT 60.096 33.333 15.65 0.00 0.00 1.94
438 439 6.363896 CCACGTGTCGCCTTTTTATTAATTTT 59.636 34.615 15.65 0.00 0.00 1.82
439 440 5.859648 CCACGTGTCGCCTTTTTATTAATTT 59.140 36.000 15.65 0.00 0.00 1.82
440 441 5.048573 ACCACGTGTCGCCTTTTTATTAATT 60.049 36.000 15.65 0.00 0.00 1.40
441 442 4.456566 ACCACGTGTCGCCTTTTTATTAAT 59.543 37.500 15.65 0.00 0.00 1.40
442 443 3.814283 ACCACGTGTCGCCTTTTTATTAA 59.186 39.130 15.65 0.00 0.00 1.40
443 444 3.186817 CACCACGTGTCGCCTTTTTATTA 59.813 43.478 15.65 0.00 0.00 0.98
444 445 2.031508 CACCACGTGTCGCCTTTTTATT 60.032 45.455 15.65 0.00 0.00 1.40
445 446 1.533731 CACCACGTGTCGCCTTTTTAT 59.466 47.619 15.65 0.00 0.00 1.40
446 447 0.938713 CACCACGTGTCGCCTTTTTA 59.061 50.000 15.65 0.00 0.00 1.52
447 448 1.720694 CCACCACGTGTCGCCTTTTT 61.721 55.000 15.65 0.00 0.00 1.94
448 449 2.184167 CCACCACGTGTCGCCTTTT 61.184 57.895 15.65 0.00 0.00 2.27
449 450 2.030490 TACCACCACGTGTCGCCTTT 62.030 55.000 15.65 0.00 0.00 3.11
450 451 2.430382 CTACCACCACGTGTCGCCTT 62.430 60.000 15.65 0.00 0.00 4.35
451 452 2.913578 TACCACCACGTGTCGCCT 60.914 61.111 15.65 0.00 0.00 5.52
452 453 2.431942 CTACCACCACGTGTCGCC 60.432 66.667 15.65 0.00 0.00 5.54
453 454 3.110178 GCTACCACCACGTGTCGC 61.110 66.667 15.65 0.00 0.00 5.19
454 455 1.733041 CAGCTACCACCACGTGTCG 60.733 63.158 15.65 4.56 0.00 4.35
455 456 0.388649 CTCAGCTACCACCACGTGTC 60.389 60.000 15.65 0.00 0.00 3.67
456 457 0.826256 TCTCAGCTACCACCACGTGT 60.826 55.000 15.65 0.00 0.00 4.49
457 458 0.109086 CTCTCAGCTACCACCACGTG 60.109 60.000 9.08 9.08 0.00 4.49
458 459 1.878656 GCTCTCAGCTACCACCACGT 61.879 60.000 0.00 0.00 38.45 4.49
459 460 1.153745 GCTCTCAGCTACCACCACG 60.154 63.158 0.00 0.00 38.45 4.94
460 461 0.539051 ATGCTCTCAGCTACCACCAC 59.461 55.000 0.00 0.00 42.97 4.16
461 462 1.208052 GAATGCTCTCAGCTACCACCA 59.792 52.381 0.00 0.00 42.97 4.17
462 463 1.474143 GGAATGCTCTCAGCTACCACC 60.474 57.143 0.00 0.00 42.97 4.61
463 464 1.208052 TGGAATGCTCTCAGCTACCAC 59.792 52.381 0.00 0.00 42.97 4.16
464 465 1.571955 TGGAATGCTCTCAGCTACCA 58.428 50.000 0.00 1.69 42.97 3.25
465 466 2.698855 TTGGAATGCTCTCAGCTACC 57.301 50.000 0.00 0.00 42.97 3.18
466 467 4.450053 AGAATTGGAATGCTCTCAGCTAC 58.550 43.478 0.00 0.00 42.97 3.58
467 468 4.767578 AGAATTGGAATGCTCTCAGCTA 57.232 40.909 0.00 0.00 42.97 3.32
468 469 3.648507 AGAATTGGAATGCTCTCAGCT 57.351 42.857 0.00 0.00 42.97 4.24
469 470 4.030134 CAAGAATTGGAATGCTCTCAGC 57.970 45.455 0.00 0.00 43.94 4.26
483 484 0.914417 TCGGAGCCTCCCCAAGAATT 60.914 55.000 4.85 0.00 31.13 2.17
484 485 0.914417 TTCGGAGCCTCCCCAAGAAT 60.914 55.000 4.85 0.00 31.13 2.40
485 486 1.537889 TTCGGAGCCTCCCCAAGAA 60.538 57.895 4.85 0.00 31.13 2.52
486 487 1.990060 CTTCGGAGCCTCCCCAAGA 60.990 63.158 4.85 0.00 31.13 3.02
487 488 2.586792 CTTCGGAGCCTCCCCAAG 59.413 66.667 4.85 3.95 31.13 3.61
488 489 3.009115 CCTTCGGAGCCTCCCCAA 61.009 66.667 4.85 0.00 31.13 4.12
489 490 3.984186 CTCCTTCGGAGCCTCCCCA 62.984 68.421 4.85 0.00 43.29 4.96
490 491 3.157949 CTCCTTCGGAGCCTCCCC 61.158 72.222 4.85 0.00 43.29 4.81
505 506 2.093235 AGCAACTAATCCAGGAGCACTC 60.093 50.000 0.00 0.00 32.38 3.51
506 507 1.912043 AGCAACTAATCCAGGAGCACT 59.088 47.619 0.00 0.00 32.38 4.40
507 508 2.093235 AGAGCAACTAATCCAGGAGCAC 60.093 50.000 0.00 0.00 32.38 4.40
508 509 2.169352 GAGAGCAACTAATCCAGGAGCA 59.831 50.000 0.00 0.00 32.38 4.26
509 510 2.801342 CGAGAGCAACTAATCCAGGAGC 60.801 54.545 0.00 0.00 0.00 4.70
510 511 2.223923 CCGAGAGCAACTAATCCAGGAG 60.224 54.545 0.00 0.00 0.00 3.69
511 512 1.757118 CCGAGAGCAACTAATCCAGGA 59.243 52.381 0.00 0.00 0.00 3.86
512 513 1.757118 TCCGAGAGCAACTAATCCAGG 59.243 52.381 0.00 0.00 0.00 4.45
513 514 2.428890 ACTCCGAGAGCAACTAATCCAG 59.571 50.000 1.33 0.00 32.04 3.86
514 515 2.457598 ACTCCGAGAGCAACTAATCCA 58.542 47.619 1.33 0.00 32.04 3.41
515 516 4.857509 ATACTCCGAGAGCAACTAATCC 57.142 45.455 1.33 0.00 32.04 3.01
516 517 5.182380 AGCTATACTCCGAGAGCAACTAATC 59.818 44.000 1.33 0.00 37.40 1.75
517 518 5.048364 CAGCTATACTCCGAGAGCAACTAAT 60.048 44.000 1.33 0.00 37.40 1.73
518 519 4.276183 CAGCTATACTCCGAGAGCAACTAA 59.724 45.833 1.33 0.00 37.40 2.24
519 520 3.815962 CAGCTATACTCCGAGAGCAACTA 59.184 47.826 1.33 0.00 37.40 2.24
520 521 2.621055 CAGCTATACTCCGAGAGCAACT 59.379 50.000 1.33 0.00 37.40 3.16
521 522 2.359531 ACAGCTATACTCCGAGAGCAAC 59.640 50.000 1.33 0.00 37.40 4.17
522 523 2.619177 GACAGCTATACTCCGAGAGCAA 59.381 50.000 1.33 0.00 37.40 3.91
523 524 2.222886 GACAGCTATACTCCGAGAGCA 58.777 52.381 1.33 0.00 37.40 4.26
524 525 1.195900 CGACAGCTATACTCCGAGAGC 59.804 57.143 1.33 0.72 32.04 4.09
525 526 1.195900 GCGACAGCTATACTCCGAGAG 59.804 57.143 1.33 0.00 41.01 3.20
526 527 1.227639 GCGACAGCTATACTCCGAGA 58.772 55.000 1.33 0.00 41.01 4.04
527 528 0.945099 TGCGACAGCTATACTCCGAG 59.055 55.000 0.00 0.00 45.42 4.63
528 529 1.385528 TTGCGACAGCTATACTCCGA 58.614 50.000 0.00 0.00 45.42 4.55
529 530 2.423926 ATTGCGACAGCTATACTCCG 57.576 50.000 0.00 0.00 45.42 4.63
530 531 5.470368 TGATTATTGCGACAGCTATACTCC 58.530 41.667 0.00 0.00 45.42 3.85
541 542 7.603515 CAAAAGCTATGTTTGATTATTGCGAC 58.396 34.615 3.69 0.00 38.05 5.19
546 547 6.042143 CCCGCAAAAGCTATGTTTGATTATT 58.958 36.000 12.50 0.00 38.05 1.40
551 552 2.487762 CTCCCGCAAAAGCTATGTTTGA 59.512 45.455 12.50 1.71 38.05 2.69
553 554 1.818674 CCTCCCGCAAAAGCTATGTTT 59.181 47.619 0.00 0.00 0.00 2.83
630 632 0.394216 CGGGATCAATGTTGCTGGGA 60.394 55.000 0.00 0.00 0.00 4.37
641 643 2.542597 CGAACGGATTAACGGGATCAA 58.457 47.619 0.00 0.00 38.39 2.57
656 658 0.319555 TTGGAAGAGACAGCCGAACG 60.320 55.000 0.00 0.00 0.00 3.95
658 660 1.623311 TGATTGGAAGAGACAGCCGAA 59.377 47.619 0.00 0.00 0.00 4.30
681 683 1.620819 AGTGGTAGTCTGCTGGAACTG 59.379 52.381 0.00 0.00 0.00 3.16
689 691 0.734253 CTCGCACAGTGGTAGTCTGC 60.734 60.000 1.84 0.00 36.50 4.26
698 700 0.734253 GCAGGAGTACTCGCACAGTG 60.734 60.000 16.56 7.91 36.43 3.66
735 737 3.008330 GTGAGCTTAGTACTCCTGTCGA 58.992 50.000 0.00 0.00 32.98 4.20
745 749 3.067742 GCGGATTAGGTGTGAGCTTAGTA 59.932 47.826 0.00 0.00 0.00 1.82
749 753 0.905357 AGCGGATTAGGTGTGAGCTT 59.095 50.000 0.00 0.00 0.00 3.74
807 811 0.531974 GAAAGGGCGCCGTCATGATA 60.532 55.000 23.85 0.00 0.00 2.15
808 812 1.819632 GAAAGGGCGCCGTCATGAT 60.820 57.895 23.85 2.73 0.00 2.45
809 813 2.435938 GAAAGGGCGCCGTCATGA 60.436 61.111 23.85 0.00 0.00 3.07
810 814 1.656818 ATTGAAAGGGCGCCGTCATG 61.657 55.000 23.85 0.00 0.00 3.07
811 815 1.376609 GATTGAAAGGGCGCCGTCAT 61.377 55.000 23.85 14.69 0.00 3.06
815 819 0.248621 GATTGATTGAAAGGGCGCCG 60.249 55.000 22.54 0.00 0.00 6.46
841 845 1.097547 CATGGTGGCGAGGGAATCAC 61.098 60.000 0.00 0.00 0.00 3.06
949 987 1.621672 GGGAGCTGAGGAAGAGGGTG 61.622 65.000 0.00 0.00 0.00 4.61
1123 1175 1.139734 CGTGGACGAGGATGGACAG 59.860 63.158 0.00 0.00 43.02 3.51
1155 1207 1.714414 GAAGAGCATGAGCAGCACG 59.286 57.895 0.00 0.00 45.49 5.34
1222 1274 4.437390 GCACCATGAAGCACACATAGTAAC 60.437 45.833 0.00 0.00 0.00 2.50
1228 1280 0.251474 AGGCACCATGAAGCACACAT 60.251 50.000 10.76 0.00 0.00 3.21
1246 1302 6.616774 AAGAAAAGCAGAGAGAGAACAAAG 57.383 37.500 0.00 0.00 0.00 2.77
1282 1342 4.272748 AGTTTCACTAAACCAAGCTCGAAC 59.727 41.667 0.00 0.00 45.11 3.95
1315 1375 6.309712 AGAAAACATAATCATGCATCCTCG 57.690 37.500 0.00 0.00 35.39 4.63
1330 1390 2.715268 CAACACGCACGAAGAAAACAT 58.285 42.857 0.00 0.00 0.00 2.71
1366 1426 8.747666 GTTTCATAGCTCTTTATTACTGAGACG 58.252 37.037 0.00 0.00 0.00 4.18
1409 1470 1.161843 GCCGAAAGAAAACCATCCGA 58.838 50.000 0.00 0.00 0.00 4.55
1430 1491 7.442666 GGTACTCCATGAGAATTCATCTTAACC 59.557 40.741 8.44 0.79 42.12 2.85
1553 1617 1.226018 GTTTGTATCGGCGCACTGC 60.226 57.895 10.83 0.00 45.38 4.40
1556 1620 2.095847 TCCGTTTGTATCGGCGCAC 61.096 57.895 10.83 2.88 46.49 5.34
1557 1621 2.095847 GTCCGTTTGTATCGGCGCA 61.096 57.895 10.83 0.00 46.49 6.09
1601 1666 3.274281 AAAATGGGTCAGGAATGGGTT 57.726 42.857 0.00 0.00 0.00 4.11
1625 1690 1.662446 ACGTCGACGCAAATTCGGT 60.662 52.632 35.92 12.02 44.43 4.69
1629 1694 1.657094 GTATCCACGTCGACGCAAATT 59.343 47.619 35.92 19.70 44.43 1.82
1701 1781 3.019564 CTGAGGAAAATGATGGTGGTCC 58.980 50.000 0.00 0.00 0.00 4.46
1702 1782 3.955471 TCTGAGGAAAATGATGGTGGTC 58.045 45.455 0.00 0.00 0.00 4.02
1703 1783 4.387026 TTCTGAGGAAAATGATGGTGGT 57.613 40.909 0.00 0.00 0.00 4.16
1710 1790 5.065914 CAGGAGTGTTTCTGAGGAAAATGA 58.934 41.667 0.00 0.00 42.22 2.57
1748 1840 4.700448 CATGGCTGGTTGGGGGCA 62.700 66.667 0.00 0.00 41.95 5.36
1885 1999 2.579241 GCTCTTCGAGCGTCAGCGTA 62.579 60.000 0.00 0.00 45.85 4.42
2058 2176 1.612199 CCGTGCTGGCTAGGGTTTAAA 60.612 52.381 0.00 0.00 0.00 1.52
2110 2228 1.903860 AGTTACATCTGGGGCGTTACA 59.096 47.619 0.00 0.00 0.00 2.41
2111 2229 2.685850 AGTTACATCTGGGGCGTTAC 57.314 50.000 0.00 0.00 0.00 2.50
2112 2230 3.602483 GAAAGTTACATCTGGGGCGTTA 58.398 45.455 0.00 0.00 0.00 3.18
2113 2231 2.433436 GAAAGTTACATCTGGGGCGTT 58.567 47.619 0.00 0.00 0.00 4.84
2114 2232 1.339727 GGAAAGTTACATCTGGGGCGT 60.340 52.381 0.00 0.00 0.00 5.68
2115 2233 1.379527 GGAAAGTTACATCTGGGGCG 58.620 55.000 0.00 0.00 0.00 6.13
2116 2234 1.685180 GGGGAAAGTTACATCTGGGGC 60.685 57.143 0.00 0.00 0.00 5.80
2117 2235 1.638589 TGGGGAAAGTTACATCTGGGG 59.361 52.381 0.00 0.00 0.00 4.96
2118 2236 3.669939 ATGGGGAAAGTTACATCTGGG 57.330 47.619 0.00 0.00 0.00 4.45
2119 2237 4.772100 ACAAATGGGGAAAGTTACATCTGG 59.228 41.667 0.00 0.00 0.00 3.86
2120 2238 5.982890 ACAAATGGGGAAAGTTACATCTG 57.017 39.130 0.00 0.00 0.00 2.90
2121 2239 6.790319 AGTACAAATGGGGAAAGTTACATCT 58.210 36.000 0.00 0.00 0.00 2.90
2122 2240 6.095021 GGAGTACAAATGGGGAAAGTTACATC 59.905 42.308 0.00 0.00 0.00 3.06
2123 2241 5.949952 GGAGTACAAATGGGGAAAGTTACAT 59.050 40.000 0.00 0.00 0.00 2.29
2124 2242 5.163077 TGGAGTACAAATGGGGAAAGTTACA 60.163 40.000 0.00 0.00 0.00 2.41
2125 2243 5.318630 TGGAGTACAAATGGGGAAAGTTAC 58.681 41.667 0.00 0.00 0.00 2.50
2126 2244 5.586155 TGGAGTACAAATGGGGAAAGTTA 57.414 39.130 0.00 0.00 0.00 2.24
2127 2245 4.463050 TGGAGTACAAATGGGGAAAGTT 57.537 40.909 0.00 0.00 0.00 2.66
2128 2246 4.141018 AGTTGGAGTACAAATGGGGAAAGT 60.141 41.667 0.00 0.00 41.58 2.66
2129 2247 4.407365 AGTTGGAGTACAAATGGGGAAAG 58.593 43.478 0.00 0.00 41.58 2.62
2130 2248 4.105697 AGAGTTGGAGTACAAATGGGGAAA 59.894 41.667 0.00 0.00 41.58 3.13
2131 2249 3.655777 AGAGTTGGAGTACAAATGGGGAA 59.344 43.478 0.00 0.00 41.58 3.97
2132 2250 3.256704 AGAGTTGGAGTACAAATGGGGA 58.743 45.455 0.00 0.00 41.58 4.81
2133 2251 3.721087 AGAGTTGGAGTACAAATGGGG 57.279 47.619 0.00 0.00 41.58 4.96
2134 2252 3.191371 GCAAGAGTTGGAGTACAAATGGG 59.809 47.826 0.00 0.00 41.58 4.00
2135 2253 3.191371 GGCAAGAGTTGGAGTACAAATGG 59.809 47.826 0.00 0.00 41.58 3.16
2136 2254 3.120199 CGGCAAGAGTTGGAGTACAAATG 60.120 47.826 0.00 0.00 41.58 2.32
2137 2255 3.074412 CGGCAAGAGTTGGAGTACAAAT 58.926 45.455 0.00 0.00 41.58 2.32
2138 2256 2.158871 ACGGCAAGAGTTGGAGTACAAA 60.159 45.455 0.00 0.00 41.58 2.83
2139 2257 1.414919 ACGGCAAGAGTTGGAGTACAA 59.585 47.619 0.00 0.00 36.54 2.41
2140 2258 1.045407 ACGGCAAGAGTTGGAGTACA 58.955 50.000 0.00 0.00 0.00 2.90
2141 2259 2.165319 AACGGCAAGAGTTGGAGTAC 57.835 50.000 0.00 0.00 0.00 2.73
2142 2260 2.549349 GGAAACGGCAAGAGTTGGAGTA 60.549 50.000 0.00 0.00 31.43 2.59
2143 2261 1.594331 GAAACGGCAAGAGTTGGAGT 58.406 50.000 0.00 0.00 31.43 3.85
2144 2262 0.875059 GGAAACGGCAAGAGTTGGAG 59.125 55.000 0.00 0.00 31.43 3.86
2145 2263 3.015516 GGAAACGGCAAGAGTTGGA 57.984 52.632 0.00 0.00 31.43 3.53
2160 2278 9.675464 AGAAATAAATATAACTTGACACCGGAA 57.325 29.630 9.46 0.00 0.00 4.30
2161 2279 9.321562 GAGAAATAAATATAACTTGACACCGGA 57.678 33.333 9.46 0.00 0.00 5.14
2162 2280 8.273557 CGAGAAATAAATATAACTTGACACCGG 58.726 37.037 0.00 0.00 0.00 5.28
2163 2281 8.273557 CCGAGAAATAAATATAACTTGACACCG 58.726 37.037 0.00 0.00 0.00 4.94
2164 2282 8.557029 CCCGAGAAATAAATATAACTTGACACC 58.443 37.037 0.00 0.00 0.00 4.16
2165 2283 9.106070 ACCCGAGAAATAAATATAACTTGACAC 57.894 33.333 0.00 0.00 0.00 3.67
2166 2284 9.675464 AACCCGAGAAATAAATATAACTTGACA 57.325 29.630 0.00 0.00 0.00 3.58
2168 2286 9.037737 CGAACCCGAGAAATAAATATAACTTGA 57.962 33.333 0.00 0.00 38.22 3.02
2169 2287 8.280497 CCGAACCCGAGAAATAAATATAACTTG 58.720 37.037 0.00 0.00 38.22 3.16
2170 2288 7.443272 CCCGAACCCGAGAAATAAATATAACTT 59.557 37.037 0.00 0.00 38.22 2.66
2171 2289 6.932960 CCCGAACCCGAGAAATAAATATAACT 59.067 38.462 0.00 0.00 38.22 2.24
2172 2290 6.707608 ACCCGAACCCGAGAAATAAATATAAC 59.292 38.462 0.00 0.00 38.22 1.89
2173 2291 6.829849 ACCCGAACCCGAGAAATAAATATAA 58.170 36.000 0.00 0.00 38.22 0.98
2174 2292 6.423776 ACCCGAACCCGAGAAATAAATATA 57.576 37.500 0.00 0.00 38.22 0.86
2175 2293 5.300411 ACCCGAACCCGAGAAATAAATAT 57.700 39.130 0.00 0.00 38.22 1.28
2176 2294 4.443315 GGACCCGAACCCGAGAAATAAATA 60.443 45.833 0.00 0.00 38.22 1.40
2177 2295 3.538591 GACCCGAACCCGAGAAATAAAT 58.461 45.455 0.00 0.00 38.22 1.40
2178 2296 2.355007 GGACCCGAACCCGAGAAATAAA 60.355 50.000 0.00 0.00 38.22 1.40
2179 2297 1.207811 GGACCCGAACCCGAGAAATAA 59.792 52.381 0.00 0.00 38.22 1.40
2180 2298 0.826062 GGACCCGAACCCGAGAAATA 59.174 55.000 0.00 0.00 38.22 1.40
2181 2299 0.908180 AGGACCCGAACCCGAGAAAT 60.908 55.000 0.00 0.00 38.22 2.17
2182 2300 1.123246 AAGGACCCGAACCCGAGAAA 61.123 55.000 0.00 0.00 38.22 2.52
2183 2301 1.534717 AAGGACCCGAACCCGAGAA 60.535 57.895 0.00 0.00 38.22 2.87
2184 2302 2.118951 AAGGACCCGAACCCGAGA 59.881 61.111 0.00 0.00 38.22 4.04
2185 2303 2.264794 CAAGGACCCGAACCCGAG 59.735 66.667 0.00 0.00 38.22 4.63
2186 2304 2.524887 ACAAGGACCCGAACCCGA 60.525 61.111 0.00 0.00 38.22 5.14
2187 2305 2.047560 GACAAGGACCCGAACCCG 60.048 66.667 0.00 0.00 0.00 5.28
2188 2306 1.295746 GAGACAAGGACCCGAACCC 59.704 63.158 0.00 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.