Multiple sequence alignment - TraesCS3A01G363700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G363700 chr3A 100.000 7870 0 0 1 7870 611963839 611971708 0.000000e+00 14534.0
1 TraesCS3A01G363700 chr3A 100.000 122 0 0 7056 7177 611970778 611970899 7.950000e-55 226.0
2 TraesCS3A01G363700 chr3A 100.000 122 0 0 6940 7061 611970894 611971015 7.950000e-55 226.0
3 TraesCS3A01G363700 chr3A 100.000 40 0 0 7745 7784 611971546 611971585 3.050000e-09 75.0
4 TraesCS3A01G363700 chr3A 100.000 40 0 0 7708 7747 611971583 611971622 3.050000e-09 75.0
5 TraesCS3A01G363700 chr3B 92.591 7153 318 98 3 7061 623823660 623830694 0.000000e+00 10078.0
6 TraesCS3A01G363700 chr3B 92.919 579 19 12 7056 7634 623830574 623831130 0.000000e+00 822.0
7 TraesCS3A01G363700 chr3B 84.768 151 12 5 1584 1733 50787560 50787420 2.960000e-29 141.0
8 TraesCS3A01G363700 chr3D 95.497 4197 130 27 2500 6654 469481525 469485704 0.000000e+00 6649.0
9 TraesCS3A01G363700 chr3D 89.101 1257 48 28 280 1519 469479035 469480219 0.000000e+00 1480.0
10 TraesCS3A01G363700 chr3D 91.162 1007 42 28 1512 2503 469480256 469481230 0.000000e+00 1323.0
11 TraesCS3A01G363700 chr3D 96.208 501 16 2 7056 7556 469485931 469486428 0.000000e+00 817.0
12 TraesCS3A01G363700 chr3D 90.800 500 33 8 1813 2300 562382669 562382171 0.000000e+00 656.0
13 TraesCS3A01G363700 chr3D 96.307 352 11 2 6710 7061 469485702 469486051 1.900000e-160 577.0
14 TraesCS3A01G363700 chr3D 86.560 439 40 5 1 430 469475175 469475603 4.300000e-127 466.0
15 TraesCS3A01G363700 chr3D 88.926 298 27 3 1 295 469478728 469479022 5.800000e-96 363.0
16 TraesCS3A01G363700 chr3D 86.170 188 16 6 7622 7809 469486427 469486604 2.240000e-45 195.0
17 TraesCS3A01G363700 chr3D 93.548 62 3 1 7809 7870 469486649 469486709 3.020000e-14 91.6
18 TraesCS3A01G363700 chr3D 75.978 179 25 11 2 179 469478025 469478186 8.470000e-10 76.8
19 TraesCS3A01G363700 chr7D 91.200 500 31 8 1813 2300 602023331 602022833 0.000000e+00 667.0
20 TraesCS3A01G363700 chr7D 90.570 509 38 6 1801 2300 266879260 266879767 0.000000e+00 665.0
21 TraesCS3A01G363700 chr7D 89.844 512 39 9 1801 2300 169476805 169477315 0.000000e+00 645.0
22 TraesCS3A01G363700 chr7D 89.382 518 36 9 1801 2300 21762517 21763033 1.110000e-177 634.0
23 TraesCS3A01G363700 chrUn 90.656 503 34 8 1810 2300 108983231 108983732 0.000000e+00 656.0
24 TraesCS3A01G363700 chr1D 87.908 521 41 10 1801 2300 226956238 226956757 1.890000e-165 593.0
25 TraesCS3A01G363700 chr1D 92.084 379 23 4 1801 2173 318662989 318663366 1.950000e-145 527.0
26 TraesCS3A01G363700 chr1D 79.012 243 49 2 2770 3011 379143892 379143651 1.760000e-36 165.0
27 TraesCS3A01G363700 chr5D 91.755 376 24 4 1801 2170 42562868 42563242 4.210000e-142 516.0
28 TraesCS3A01G363700 chr4B 90.000 170 13 4 1566 1733 291662112 291662279 4.780000e-52 217.0
29 TraesCS3A01G363700 chr7B 92.568 148 9 2 1587 1733 468955981 468955835 2.220000e-50 211.0
30 TraesCS3A01G363700 chr4D 91.912 136 8 2 2165 2300 51344588 51344720 3.750000e-43 187.0
31 TraesCS3A01G363700 chr1B 79.012 243 49 2 2770 3011 507854166 507853925 1.760000e-36 165.0
32 TraesCS3A01G363700 chr1A 78.601 243 50 2 2770 3011 479838706 479838465 8.170000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G363700 chr3A 611963839 611971708 7869 False 3027.20 14534 100.0000 1 7870 5 chr3A.!!$F1 7869
1 TraesCS3A01G363700 chr3B 623823660 623831130 7470 False 5450.00 10078 92.7550 3 7634 2 chr3B.!!$F1 7631
2 TraesCS3A01G363700 chr3D 469475175 469486709 11534 False 1203.84 6649 89.9457 1 7870 10 chr3D.!!$F1 7869
3 TraesCS3A01G363700 chr7D 266879260 266879767 507 False 665.00 665 90.5700 1801 2300 1 chr7D.!!$F3 499
4 TraesCS3A01G363700 chr7D 169476805 169477315 510 False 645.00 645 89.8440 1801 2300 1 chr7D.!!$F2 499
5 TraesCS3A01G363700 chr7D 21762517 21763033 516 False 634.00 634 89.3820 1801 2300 1 chr7D.!!$F1 499
6 TraesCS3A01G363700 chrUn 108983231 108983732 501 False 656.00 656 90.6560 1810 2300 1 chrUn.!!$F1 490
7 TraesCS3A01G363700 chr1D 226956238 226956757 519 False 593.00 593 87.9080 1801 2300 1 chr1D.!!$F1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 4082 0.112412 GAGGACAGCCCCCAAAAAGA 59.888 55.000 0.00 0.0 34.66 2.52 F
488 4083 0.113190 AGGACAGCCCCCAAAAAGAG 59.887 55.000 0.00 0.0 34.66 2.85 F
1173 4782 0.496382 TTTTCCTCCTCCTCCTCCCA 59.504 55.000 0.00 0.0 0.00 4.37 F
2385 6090 0.104855 GAGCGCCATATGAGGTGTGA 59.895 55.000 2.29 0.0 41.26 3.58 F
2731 6751 1.375523 AACTGGGCCGTCTTTAGCG 60.376 57.895 0.00 0.0 0.00 4.26 F
3486 7512 0.038310 AAAGGCTACTCCTGGTTGGC 59.962 55.000 0.00 0.0 46.94 4.52 F
4229 8256 0.264657 AAGGCAGGAAAGGTGGGTTT 59.735 50.000 0.00 0.0 0.00 3.27 F
4878 8923 0.615331 ACCAGCGTGATTCCAGATGT 59.385 50.000 0.00 0.0 0.00 3.06 F
5916 9973 1.862123 CCTGTCGCACATGACACAC 59.138 57.895 0.00 0.0 43.62 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1388 5000 0.038618 AACAAATTTTCGCCGCCTCC 60.039 50.000 0.00 0.00 0.00 4.30 R
1904 5581 0.107945 GGTACTTGAGCCTCTGCCTG 60.108 60.000 0.00 0.00 38.69 4.85 R
2393 6098 2.477375 GTGTGCATGGCAATTGTTCTTG 59.523 45.455 7.40 9.26 41.47 3.02 R
3364 7390 1.208293 GCTCTAGCTAGCCAACTGGTT 59.792 52.381 16.35 0.00 36.45 3.67 R
4696 8741 1.677217 CCTCCTTTCAGAAGAAGGCCG 60.677 57.143 0.00 0.00 30.05 6.13 R
4878 8923 3.563390 GCCAATAAGCTTTTTGCCAACAA 59.437 39.130 20.39 0.00 44.23 2.83 R
6014 10071 4.214119 CCTGCATACCTTCCATAACGATTG 59.786 45.833 0.00 0.00 0.00 2.67 R
6387 10446 0.321298 TAGGCCCAAGCGAGTCAAAC 60.321 55.000 0.00 0.00 41.24 2.93 R
7652 11713 1.065199 CAGAGGCCAGGCTATGTGAAA 60.065 52.381 12.43 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 3581 4.184079 AGCATGGAATCAGTTCTTTTGC 57.816 40.909 0.00 0.00 35.58 3.68
60 3614 6.808321 AGTTATCAGCTGGTTCCACTATTA 57.192 37.500 15.13 0.00 0.00 0.98
80 3634 8.416329 ACTATTAGCCAAATGTTCCATTCAATC 58.584 33.333 0.00 0.00 0.00 2.67
82 3636 3.119029 AGCCAAATGTTCCATTCAATCGG 60.119 43.478 0.00 0.00 0.00 4.18
131 3685 2.829043 TTCCGTGACCCGAGCATTCG 62.829 60.000 0.00 0.00 46.29 3.34
163 3717 5.416271 AGTTCCATAGCTTCTAAAACCGA 57.584 39.130 0.00 0.00 0.00 4.69
179 3733 2.040178 ACCGATCCATTCCACTCTACC 58.960 52.381 0.00 0.00 0.00 3.18
180 3734 2.039418 CCGATCCATTCCACTCTACCA 58.961 52.381 0.00 0.00 0.00 3.25
181 3735 2.224066 CCGATCCATTCCACTCTACCAC 60.224 54.545 0.00 0.00 0.00 4.16
266 3823 1.775385 TCCATCGACATGCTACTCCA 58.225 50.000 0.00 0.00 0.00 3.86
285 3870 4.290093 TCCACTAGCAGATACCACATTCT 58.710 43.478 0.00 0.00 0.00 2.40
305 3890 3.517100 TCTCATCTCCTTGGGACTCAAAG 59.483 47.826 0.00 0.00 34.56 2.77
316 3901 4.513442 TGGGACTCAAAGTATGCACATAC 58.487 43.478 11.97 11.97 42.96 2.39
353 3938 5.691754 GCAACCTCTTTTAAGGAAACATGTG 59.308 40.000 0.00 0.00 38.87 3.21
355 3940 6.884280 ACCTCTTTTAAGGAAACATGTGAG 57.116 37.500 0.00 0.00 38.87 3.51
367 3956 5.508825 GGAAACATGTGAGTACAAATTGGCA 60.509 40.000 0.00 0.00 40.84 4.92
373 3962 0.881118 AGTACAAATTGGCAGGTGCG 59.119 50.000 0.00 0.00 43.26 5.34
430 4024 0.609406 AGAGCCAGCAGTACGAGTGA 60.609 55.000 0.00 0.00 0.00 3.41
432 4026 0.244994 AGCCAGCAGTACGAGTGAAG 59.755 55.000 0.00 0.00 0.00 3.02
433 4027 0.243907 GCCAGCAGTACGAGTGAAGA 59.756 55.000 0.00 0.00 0.00 2.87
434 4028 1.734047 GCCAGCAGTACGAGTGAAGAG 60.734 57.143 0.00 0.00 0.00 2.85
435 4029 1.542030 CCAGCAGTACGAGTGAAGAGT 59.458 52.381 0.00 0.00 0.00 3.24
436 4030 2.590073 CAGCAGTACGAGTGAAGAGTG 58.410 52.381 0.00 0.00 0.00 3.51
437 4031 2.030717 CAGCAGTACGAGTGAAGAGTGT 60.031 50.000 0.00 0.00 0.00 3.55
438 4032 3.188667 CAGCAGTACGAGTGAAGAGTGTA 59.811 47.826 0.00 0.00 0.00 2.90
439 4033 3.188873 AGCAGTACGAGTGAAGAGTGTAC 59.811 47.826 0.00 0.00 36.52 2.90
440 4034 3.188873 GCAGTACGAGTGAAGAGTGTACT 59.811 47.826 0.00 0.00 44.72 2.73
441 4035 4.391216 GCAGTACGAGTGAAGAGTGTACTA 59.609 45.833 3.32 0.00 42.68 1.82
442 4036 5.670835 GCAGTACGAGTGAAGAGTGTACTAC 60.671 48.000 3.32 0.00 42.68 2.73
443 4037 4.934602 AGTACGAGTGAAGAGTGTACTACC 59.065 45.833 1.78 0.00 42.73 3.18
444 4038 3.748083 ACGAGTGAAGAGTGTACTACCA 58.252 45.455 0.00 0.00 0.00 3.25
445 4039 4.333690 ACGAGTGAAGAGTGTACTACCAT 58.666 43.478 0.00 0.00 0.00 3.55
446 4040 5.494724 ACGAGTGAAGAGTGTACTACCATA 58.505 41.667 0.00 0.00 0.00 2.74
447 4041 5.353678 ACGAGTGAAGAGTGTACTACCATAC 59.646 44.000 0.00 0.00 0.00 2.39
448 4042 5.220815 CGAGTGAAGAGTGTACTACCATACC 60.221 48.000 0.00 0.00 0.00 2.73
449 4043 5.577100 AGTGAAGAGTGTACTACCATACCA 58.423 41.667 0.00 0.00 0.00 3.25
450 4044 6.195700 AGTGAAGAGTGTACTACCATACCAT 58.804 40.000 0.00 0.00 0.00 3.55
451 4045 7.351952 AGTGAAGAGTGTACTACCATACCATA 58.648 38.462 0.00 0.00 0.00 2.74
452 4046 7.284944 AGTGAAGAGTGTACTACCATACCATAC 59.715 40.741 0.00 0.00 0.00 2.39
453 4047 6.548622 TGAAGAGTGTACTACCATACCATACC 59.451 42.308 0.00 0.00 0.00 2.73
454 4048 6.022107 AGAGTGTACTACCATACCATACCA 57.978 41.667 0.00 0.00 0.00 3.25
455 4049 6.621394 AGAGTGTACTACCATACCATACCAT 58.379 40.000 0.00 0.00 0.00 3.55
456 4050 6.493802 AGAGTGTACTACCATACCATACCATG 59.506 42.308 0.00 0.00 0.00 3.66
485 4080 1.155155 GGAGGACAGCCCCCAAAAA 59.845 57.895 0.00 0.00 34.66 1.94
486 4081 0.900182 GGAGGACAGCCCCCAAAAAG 60.900 60.000 0.00 0.00 34.66 2.27
487 4082 0.112412 GAGGACAGCCCCCAAAAAGA 59.888 55.000 0.00 0.00 34.66 2.52
488 4083 0.113190 AGGACAGCCCCCAAAAAGAG 59.887 55.000 0.00 0.00 34.66 2.85
619 4227 3.009714 AACGGCCTTCCCTCCCTC 61.010 66.667 0.00 0.00 0.00 4.30
1006 4615 4.918201 CGGAGCGGAGAATGGGCC 62.918 72.222 0.00 0.00 0.00 5.80
1157 4766 0.738412 GCATGCATGGCGAGCTTTTT 60.738 50.000 27.34 0.00 0.00 1.94
1172 4781 1.562008 CTTTTTCCTCCTCCTCCTCCC 59.438 57.143 0.00 0.00 0.00 4.30
1173 4782 0.496382 TTTTCCTCCTCCTCCTCCCA 59.504 55.000 0.00 0.00 0.00 4.37
1186 4795 1.045407 CCTCCCATCCCGATACGAAA 58.955 55.000 0.00 0.00 0.00 3.46
1202 4811 4.770874 AACTAATGCCGCCGCCGT 62.771 61.111 0.00 0.00 0.00 5.68
1217 4829 2.742738 CCGTCGCCGCCGTTTTATT 61.743 57.895 0.00 0.00 35.54 1.40
1237 4849 4.090057 GCCTGTTCGCTGCCGTTC 62.090 66.667 0.00 0.00 35.54 3.95
1247 4859 1.487482 GCTGCCGTTCCTTTTGTTTC 58.513 50.000 0.00 0.00 0.00 2.78
1252 4864 1.611977 CCGTTCCTTTTGTTTCCCCTC 59.388 52.381 0.00 0.00 0.00 4.30
1253 4865 1.611977 CGTTCCTTTTGTTTCCCCTCC 59.388 52.381 0.00 0.00 0.00 4.30
1254 4866 2.751816 CGTTCCTTTTGTTTCCCCTCCT 60.752 50.000 0.00 0.00 0.00 3.69
1255 4867 2.891580 GTTCCTTTTGTTTCCCCTCCTC 59.108 50.000 0.00 0.00 0.00 3.71
1278 4890 3.147595 CTCCGGCGTGATCCTGGA 61.148 66.667 6.01 0.00 0.00 3.86
1388 5000 6.309494 TGATTCCGTAAAGTATCTGTTCAACG 59.691 38.462 0.00 0.00 0.00 4.10
1389 5001 4.835199 CCGTAAAGTATCTGTTCAACGG 57.165 45.455 0.00 0.00 42.12 4.44
1472 5084 2.002586 CACGTGCTGGGTTCTAGATTG 58.997 52.381 0.82 0.00 0.00 2.67
1482 5116 4.164221 TGGGTTCTAGATTGTCCCAGATTC 59.836 45.833 16.41 0.00 42.52 2.52
1556 5232 8.149973 TGGTGTTTTGTGATTAGAGAAAGTAC 57.850 34.615 0.00 0.00 0.00 2.73
1557 5233 7.990886 TGGTGTTTTGTGATTAGAGAAAGTACT 59.009 33.333 0.00 0.00 0.00 2.73
1572 5248 7.661847 AGAGAAAGTACTTTGTGGGAGTAATTG 59.338 37.037 25.17 0.00 37.78 2.32
1599 5275 3.370061 ACTTTGTCGCTAAGTAAATCGGC 59.630 43.478 5.28 0.00 34.22 5.54
1624 5301 2.470821 GTTCGTCGGGTCCATCTAATG 58.529 52.381 0.00 0.00 0.00 1.90
1626 5303 2.594131 TCGTCGGGTCCATCTAATGAT 58.406 47.619 0.00 0.00 0.00 2.45
1748 5425 1.004595 CGACATGTCATGTGCTCTGG 58.995 55.000 23.08 1.35 45.03 3.86
1925 5602 1.153549 GCAGAGGCTCAAGTACCGG 60.154 63.158 18.26 0.00 36.96 5.28
2173 5856 5.777802 TGCTGTTCTTTCTTTTGTTGTTGA 58.222 33.333 0.00 0.00 0.00 3.18
2176 5859 6.531240 GCTGTTCTTTCTTTTGTTGTTGATGA 59.469 34.615 0.00 0.00 0.00 2.92
2177 5860 7.253883 GCTGTTCTTTCTTTTGTTGTTGATGAG 60.254 37.037 0.00 0.00 0.00 2.90
2181 5864 8.287439 TCTTTCTTTTGTTGTTGATGAGGTTA 57.713 30.769 0.00 0.00 0.00 2.85
2182 5865 8.744652 TCTTTCTTTTGTTGTTGATGAGGTTAA 58.255 29.630 0.00 0.00 0.00 2.01
2183 5866 8.696410 TTTCTTTTGTTGTTGATGAGGTTAAC 57.304 30.769 0.00 0.00 0.00 2.01
2184 5867 7.397892 TCTTTTGTTGTTGATGAGGTTAACA 57.602 32.000 8.10 0.00 34.84 2.41
2186 5869 9.126151 TCTTTTGTTGTTGATGAGGTTAACATA 57.874 29.630 8.10 0.00 36.37 2.29
2337 6042 4.460948 TCTTAAGGTGATACCGGTGTTC 57.539 45.455 19.93 14.77 44.90 3.18
2376 6081 0.882474 GTACGAGGAGAGCGCCATAT 59.118 55.000 2.29 0.00 0.00 1.78
2385 6090 0.104855 GAGCGCCATATGAGGTGTGA 59.895 55.000 2.29 0.00 41.26 3.58
2393 6098 4.754114 GCCATATGAGGTGTGATTTCTCTC 59.246 45.833 3.65 0.00 0.00 3.20
2431 6137 2.291741 CACACCCAAGCTTCAGAGTTTC 59.708 50.000 0.00 0.00 0.00 2.78
2491 6199 7.739498 AATTGACAATTGTCCGTAGTTTAGT 57.261 32.000 30.66 8.06 44.15 2.24
2582 6589 1.712401 CTCTCTGTCTGTCTTGCTGC 58.288 55.000 0.00 0.00 0.00 5.25
2619 6638 3.374988 TGCTGTAACAGAATATGCAGTGC 59.625 43.478 8.58 8.58 32.44 4.40
2626 6645 4.599041 ACAGAATATGCAGTGCCCTTTTA 58.401 39.130 13.72 0.00 0.00 1.52
2665 6684 6.569179 TGTTTATCACTCCAGGCTTTAAAC 57.431 37.500 0.00 0.00 0.00 2.01
2731 6751 1.375523 AACTGGGCCGTCTTTAGCG 60.376 57.895 0.00 0.00 0.00 4.26
2769 6789 7.312154 TGGTTATAACATTTGACTTCATGTGC 58.688 34.615 17.16 0.00 33.76 4.57
2780 6800 4.197750 GACTTCATGTGCAGGATTCATCT 58.802 43.478 0.00 0.00 0.00 2.90
2843 6863 4.637534 GCAAAAGAACTGGATGCTGATCTA 59.362 41.667 4.52 0.00 34.29 1.98
2891 6911 2.241685 ACTCTATAGTGGTCCACCGAGT 59.758 50.000 18.80 19.48 39.43 4.18
3085 7105 8.463930 TTTTCTCCCTTGTTATTATAGCATGG 57.536 34.615 12.02 12.02 35.09 3.66
3090 7110 9.349713 CTCCCTTGTTATTATAGCATGGTTTAA 57.650 33.333 15.82 6.49 34.00 1.52
3154 7174 2.513753 CAAGCCACTATGGTTGGACAA 58.486 47.619 0.00 0.00 40.46 3.18
3166 7186 1.537202 GTTGGACAAACTGCCAGCTAG 59.463 52.381 0.00 0.00 35.75 3.42
3189 7209 7.281040 AGTATATTTGAGCAATCCATGGTTG 57.719 36.000 12.58 15.80 40.59 3.77
3248 7268 7.735500 TCGTAAATCAGTGTGCAAGTATTTAC 58.264 34.615 14.91 14.91 36.85 2.01
3249 7269 7.385478 TCGTAAATCAGTGTGCAAGTATTTACA 59.615 33.333 19.99 11.42 38.66 2.41
3390 7416 1.112315 TGGCTAGCTAGAGCAGGCTC 61.112 60.000 25.15 13.27 44.76 4.70
3439 7465 2.512515 GGCTTGGTGCTCGCCTAG 60.513 66.667 6.57 6.57 40.62 3.02
3440 7466 2.266055 GCTTGGTGCTCGCCTAGT 59.734 61.111 11.39 0.00 38.95 2.57
3441 7467 1.811679 GCTTGGTGCTCGCCTAGTC 60.812 63.158 11.39 2.56 38.95 2.59
3442 7468 1.517257 CTTGGTGCTCGCCTAGTCG 60.517 63.158 0.86 0.00 0.00 4.18
3443 7469 3.642778 TTGGTGCTCGCCTAGTCGC 62.643 63.158 0.86 0.00 0.00 5.19
3444 7470 4.874977 GGTGCTCGCCTAGTCGCC 62.875 72.222 0.00 0.00 0.00 5.54
3454 7480 1.740718 GCCTAGTCGCCTTTCTTCCTG 60.741 57.143 0.00 0.00 0.00 3.86
3486 7512 0.038310 AAAGGCTACTCCTGGTTGGC 59.962 55.000 0.00 0.00 46.94 4.52
3567 7593 9.817365 CATTTAGTGTTTGATTACTTCACTGAG 57.183 33.333 0.00 0.00 39.27 3.35
3616 7642 1.135575 GGCATGTAGTCAAGCTTGTGC 60.136 52.381 25.19 23.66 38.20 4.57
3715 7741 4.403734 TGATTTCCGCCTTCTAACCTTTT 58.596 39.130 0.00 0.00 0.00 2.27
4119 8146 1.503542 CGGTGCTCTGGATGCAAAC 59.496 57.895 0.00 0.00 42.41 2.93
4229 8256 0.264657 AAGGCAGGAAAGGTGGGTTT 59.735 50.000 0.00 0.00 0.00 3.27
4230 8257 1.154430 AGGCAGGAAAGGTGGGTTTA 58.846 50.000 0.00 0.00 0.00 2.01
4232 8259 2.090999 AGGCAGGAAAGGTGGGTTTAAA 60.091 45.455 0.00 0.00 0.00 1.52
4233 8260 2.903784 GGCAGGAAAGGTGGGTTTAAAT 59.096 45.455 0.00 0.00 0.00 1.40
4235 8262 4.202419 GGCAGGAAAGGTGGGTTTAAATTT 60.202 41.667 0.00 0.00 0.00 1.82
4236 8263 4.994852 GCAGGAAAGGTGGGTTTAAATTTC 59.005 41.667 0.00 0.00 0.00 2.17
4417 8461 6.092748 CCGAACCACATTTCTAAATTTGGAG 58.907 40.000 21.65 13.85 44.97 3.86
4696 8741 5.967427 GCTCTAGCAATCCGAAGTGGAAAC 61.967 50.000 0.00 0.00 45.75 2.78
4842 8887 7.500992 ACAGTCCTGACATATCAATTTATCGT 58.499 34.615 0.40 0.00 33.30 3.73
4878 8923 0.615331 ACCAGCGTGATTCCAGATGT 59.385 50.000 0.00 0.00 0.00 3.06
4885 8930 2.414559 CGTGATTCCAGATGTTGTTGGC 60.415 50.000 0.00 0.00 34.38 4.52
4948 8993 4.880696 GCTGATCTTCTAAAGGTGAGCATT 59.119 41.667 6.54 0.00 0.00 3.56
5645 9691 2.338500 CGAAAGAAGGTACCAGCTCAC 58.662 52.381 15.94 7.35 0.00 3.51
5666 9712 5.473162 TCACACCCTTGAAGTCAAATATGTG 59.527 40.000 17.18 17.18 39.97 3.21
5806 9852 5.623956 ATGAACATTTGATGGGCATGATT 57.376 34.783 0.00 0.00 30.49 2.57
5811 9857 6.549433 ACATTTGATGGGCATGATTAGTTT 57.451 33.333 0.00 0.00 33.60 2.66
5916 9973 1.862123 CCTGTCGCACATGACACAC 59.138 57.895 0.00 0.00 43.62 3.82
6221 10280 4.804868 TCTACGGTTATTGTGGTTGCTA 57.195 40.909 0.00 0.00 0.00 3.49
6230 10289 7.012515 CGGTTATTGTGGTTGCTAATTATGGTA 59.987 37.037 0.00 0.00 0.00 3.25
6231 10290 8.856103 GGTTATTGTGGTTGCTAATTATGGTAT 58.144 33.333 0.00 0.00 0.00 2.73
6239 10298 7.777910 TGGTTGCTAATTATGGTATTGTTAGCT 59.222 33.333 14.22 0.00 44.53 3.32
6387 10446 0.464036 TAGGTGCAGAGGTATTGCCG 59.536 55.000 0.00 0.00 43.70 5.69
6400 10459 0.238289 ATTGCCGTTTGACTCGCTTG 59.762 50.000 0.00 0.00 0.00 4.01
6403 10462 2.556287 CGTTTGACTCGCTTGGGC 59.444 61.111 0.00 0.00 0.00 5.36
6427 10486 8.413229 GGCCTAATATGTGTTGTCAAATGTTAT 58.587 33.333 0.00 0.00 29.11 1.89
6480 10539 9.745018 TCACCTTTCAATTCTATCTTTCTGAAT 57.255 29.630 0.00 0.00 32.52 2.57
6669 10729 8.140112 AGAACTGTACTTTCATATGAGGAAGT 57.860 34.615 20.96 20.96 0.00 3.01
6677 10737 3.785486 TCATATGAGGAAGTGTTCTGCG 58.215 45.455 0.00 0.00 0.00 5.18
6681 10741 0.880278 GAGGAAGTGTTCTGCGTGCA 60.880 55.000 0.00 0.00 0.00 4.57
6682 10742 1.160329 AGGAAGTGTTCTGCGTGCAC 61.160 55.000 6.82 6.82 0.00 4.57
6683 10743 1.279840 GAAGTGTTCTGCGTGCACC 59.720 57.895 12.15 4.74 33.96 5.01
6684 10744 1.436195 GAAGTGTTCTGCGTGCACCA 61.436 55.000 12.15 9.48 33.96 4.17
6686 10746 1.207593 GTGTTCTGCGTGCACCATC 59.792 57.895 12.15 1.12 0.00 3.51
6687 10747 1.071299 TGTTCTGCGTGCACCATCT 59.929 52.632 12.15 0.00 0.00 2.90
6688 10748 0.534877 TGTTCTGCGTGCACCATCTT 60.535 50.000 12.15 0.00 0.00 2.40
6689 10749 0.166814 GTTCTGCGTGCACCATCTTC 59.833 55.000 12.15 0.00 0.00 2.87
6690 10750 0.955428 TTCTGCGTGCACCATCTTCC 60.955 55.000 12.15 0.00 0.00 3.46
6691 10751 2.359850 TGCGTGCACCATCTTCCC 60.360 61.111 12.15 0.00 0.00 3.97
6692 10752 3.134127 GCGTGCACCATCTTCCCC 61.134 66.667 12.15 0.00 0.00 4.81
6693 10753 2.671070 CGTGCACCATCTTCCCCT 59.329 61.111 12.15 0.00 0.00 4.79
6694 10754 1.904771 CGTGCACCATCTTCCCCTA 59.095 57.895 12.15 0.00 0.00 3.53
6695 10755 0.469917 CGTGCACCATCTTCCCCTAT 59.530 55.000 12.15 0.00 0.00 2.57
6696 10756 1.691976 CGTGCACCATCTTCCCCTATA 59.308 52.381 12.15 0.00 0.00 1.31
6697 10757 2.289072 CGTGCACCATCTTCCCCTATAG 60.289 54.545 12.15 0.00 0.00 1.31
6698 10758 2.706190 GTGCACCATCTTCCCCTATAGT 59.294 50.000 5.22 0.00 0.00 2.12
6699 10759 3.136626 GTGCACCATCTTCCCCTATAGTT 59.863 47.826 5.22 0.00 0.00 2.24
6700 10760 3.785887 TGCACCATCTTCCCCTATAGTTT 59.214 43.478 0.00 0.00 0.00 2.66
6701 10761 4.141482 TGCACCATCTTCCCCTATAGTTTC 60.141 45.833 0.00 0.00 0.00 2.78
6702 10762 4.103311 GCACCATCTTCCCCTATAGTTTCT 59.897 45.833 0.00 0.00 0.00 2.52
6703 10763 5.398012 GCACCATCTTCCCCTATAGTTTCTT 60.398 44.000 0.00 0.00 0.00 2.52
6704 10764 6.292150 CACCATCTTCCCCTATAGTTTCTTC 58.708 44.000 0.00 0.00 0.00 2.87
6705 10765 5.970640 ACCATCTTCCCCTATAGTTTCTTCA 59.029 40.000 0.00 0.00 0.00 3.02
6744 10804 7.104290 ACTTCCTGGTTCTAAAGCATTAGTAC 58.896 38.462 8.46 8.89 39.65 2.73
6874 10935 3.191371 CCTTTGCAATGAGGGTAAGACAC 59.809 47.826 13.58 0.00 0.00 3.67
7031 11092 1.205655 TCTCTGTGCGAGGAATGAAGG 59.794 52.381 0.00 0.00 40.30 3.46
7032 11093 1.205655 CTCTGTGCGAGGAATGAAGGA 59.794 52.381 0.00 0.00 36.06 3.36
7033 11094 1.623311 TCTGTGCGAGGAATGAAGGAA 59.377 47.619 0.00 0.00 0.00 3.36
7034 11095 2.005451 CTGTGCGAGGAATGAAGGAAG 58.995 52.381 0.00 0.00 0.00 3.46
7035 11096 1.623311 TGTGCGAGGAATGAAGGAAGA 59.377 47.619 0.00 0.00 0.00 2.87
7036 11097 2.003301 GTGCGAGGAATGAAGGAAGAC 58.997 52.381 0.00 0.00 0.00 3.01
7037 11098 1.623311 TGCGAGGAATGAAGGAAGACA 59.377 47.619 0.00 0.00 0.00 3.41
7038 11099 2.038426 TGCGAGGAATGAAGGAAGACAA 59.962 45.455 0.00 0.00 0.00 3.18
7039 11100 2.675348 GCGAGGAATGAAGGAAGACAAG 59.325 50.000 0.00 0.00 0.00 3.16
7040 11101 3.617531 GCGAGGAATGAAGGAAGACAAGA 60.618 47.826 0.00 0.00 0.00 3.02
7041 11102 4.180057 CGAGGAATGAAGGAAGACAAGAG 58.820 47.826 0.00 0.00 0.00 2.85
7042 11103 4.081972 CGAGGAATGAAGGAAGACAAGAGA 60.082 45.833 0.00 0.00 0.00 3.10
7043 11104 5.418676 GAGGAATGAAGGAAGACAAGAGAG 58.581 45.833 0.00 0.00 0.00 3.20
7044 11105 3.938334 GGAATGAAGGAAGACAAGAGAGC 59.062 47.826 0.00 0.00 0.00 4.09
7045 11106 4.564406 GGAATGAAGGAAGACAAGAGAGCA 60.564 45.833 0.00 0.00 0.00 4.26
7046 11107 4.840716 ATGAAGGAAGACAAGAGAGCAT 57.159 40.909 0.00 0.00 0.00 3.79
7047 11108 4.630644 TGAAGGAAGACAAGAGAGCATT 57.369 40.909 0.00 0.00 0.00 3.56
7048 11109 4.321718 TGAAGGAAGACAAGAGAGCATTG 58.678 43.478 0.00 0.00 0.00 2.82
7049 11110 4.202398 TGAAGGAAGACAAGAGAGCATTGT 60.202 41.667 0.00 0.00 43.38 2.71
7050 11111 4.363991 AGGAAGACAAGAGAGCATTGTT 57.636 40.909 0.00 0.00 40.86 2.83
7051 11112 4.070716 AGGAAGACAAGAGAGCATTGTTG 58.929 43.478 0.00 0.00 40.86 3.33
7052 11113 3.817647 GGAAGACAAGAGAGCATTGTTGT 59.182 43.478 3.21 3.21 40.86 3.32
7053 11114 4.276926 GGAAGACAAGAGAGCATTGTTGTT 59.723 41.667 4.84 0.58 40.86 2.83
7054 11115 5.470098 GGAAGACAAGAGAGCATTGTTGTTA 59.530 40.000 4.84 0.00 40.86 2.41
7055 11116 5.931441 AGACAAGAGAGCATTGTTGTTAC 57.069 39.130 4.84 0.00 40.86 2.50
7056 11117 5.615289 AGACAAGAGAGCATTGTTGTTACT 58.385 37.500 4.84 0.00 40.86 2.24
7057 11118 6.759272 AGACAAGAGAGCATTGTTGTTACTA 58.241 36.000 4.84 0.00 40.86 1.82
7058 11119 7.390027 AGACAAGAGAGCATTGTTGTTACTAT 58.610 34.615 4.84 0.00 40.86 2.12
7059 11120 7.332926 AGACAAGAGAGCATTGTTGTTACTATG 59.667 37.037 4.84 0.00 40.86 2.23
7060 11121 6.936900 ACAAGAGAGCATTGTTGTTACTATGT 59.063 34.615 0.00 0.00 37.61 2.29
7061 11122 7.445402 ACAAGAGAGCATTGTTGTTACTATGTT 59.555 33.333 0.00 0.00 37.61 2.71
7062 11123 7.986085 AGAGAGCATTGTTGTTACTATGTTT 57.014 32.000 0.00 0.00 38.98 2.83
7063 11124 7.810658 AGAGAGCATTGTTGTTACTATGTTTG 58.189 34.615 0.00 0.00 38.98 2.93
7064 11125 6.381801 AGAGCATTGTTGTTACTATGTTTGC 58.618 36.000 0.00 0.00 38.98 3.68
7065 11126 6.016360 AGAGCATTGTTGTTACTATGTTTGCA 60.016 34.615 0.00 0.00 38.98 4.08
7066 11127 6.151691 AGCATTGTTGTTACTATGTTTGCAG 58.848 36.000 0.00 0.00 38.98 4.41
7067 11128 5.345741 GCATTGTTGTTACTATGTTTGCAGG 59.654 40.000 0.00 0.00 38.98 4.85
7068 11129 6.446318 CATTGTTGTTACTATGTTTGCAGGT 58.554 36.000 0.00 0.00 34.24 4.00
7069 11130 7.589395 CATTGTTGTTACTATGTTTGCAGGTA 58.411 34.615 0.00 0.00 34.24 3.08
7070 11131 6.795098 TGTTGTTACTATGTTTGCAGGTAG 57.205 37.500 0.00 0.00 0.00 3.18
7071 11132 6.526526 TGTTGTTACTATGTTTGCAGGTAGA 58.473 36.000 0.00 0.00 0.00 2.59
7072 11133 6.649141 TGTTGTTACTATGTTTGCAGGTAGAG 59.351 38.462 0.00 0.00 0.00 2.43
7073 11134 5.730550 TGTTACTATGTTTGCAGGTAGAGG 58.269 41.667 0.00 0.00 0.00 3.69
7074 11135 5.482526 TGTTACTATGTTTGCAGGTAGAGGA 59.517 40.000 0.00 0.00 0.00 3.71
7075 11136 6.156256 TGTTACTATGTTTGCAGGTAGAGGAT 59.844 38.462 0.00 0.00 0.00 3.24
7076 11137 5.700402 ACTATGTTTGCAGGTAGAGGATT 57.300 39.130 0.00 0.00 0.00 3.01
7077 11138 5.675538 ACTATGTTTGCAGGTAGAGGATTC 58.324 41.667 0.00 0.00 0.00 2.52
7078 11139 3.350219 TGTTTGCAGGTAGAGGATTCC 57.650 47.619 0.00 0.00 0.00 3.01
7079 11140 2.912956 TGTTTGCAGGTAGAGGATTCCT 59.087 45.455 4.44 4.44 36.03 3.36
7083 11144 2.906691 CAGGTAGAGGATTCCTGCTG 57.093 55.000 10.74 0.00 41.46 4.41
7084 11145 2.114616 CAGGTAGAGGATTCCTGCTGT 58.885 52.381 10.74 0.00 41.46 4.40
7085 11146 3.300388 CAGGTAGAGGATTCCTGCTGTA 58.700 50.000 10.74 0.00 41.46 2.74
7086 11147 3.320541 CAGGTAGAGGATTCCTGCTGTAG 59.679 52.174 10.74 0.00 41.46 2.74
7087 11148 3.205507 AGGTAGAGGATTCCTGCTGTAGA 59.794 47.826 10.74 0.00 31.76 2.59
7088 11149 3.572255 GGTAGAGGATTCCTGCTGTAGAG 59.428 52.174 10.74 0.00 31.76 2.43
7089 11150 2.038659 AGAGGATTCCTGCTGTAGAGC 58.961 52.381 10.74 4.60 46.44 4.09
7104 11165 7.133891 GCTGTAGAGCAATTTTTGTAGAAGA 57.866 36.000 7.06 0.00 45.46 2.87
7105 11166 7.584987 GCTGTAGAGCAATTTTTGTAGAAGAA 58.415 34.615 7.06 0.00 45.46 2.52
7106 11167 8.239998 GCTGTAGAGCAATTTTTGTAGAAGAAT 58.760 33.333 7.06 0.00 45.46 2.40
7107 11168 9.766277 CTGTAGAGCAATTTTTGTAGAAGAATC 57.234 33.333 0.00 0.00 0.00 2.52
7108 11169 8.730680 TGTAGAGCAATTTTTGTAGAAGAATCC 58.269 33.333 0.00 0.00 0.00 3.01
7109 11170 8.951243 GTAGAGCAATTTTTGTAGAAGAATCCT 58.049 33.333 0.00 0.00 0.00 3.24
7110 11171 8.049655 AGAGCAATTTTTGTAGAAGAATCCTC 57.950 34.615 7.69 7.69 0.00 3.71
7111 11172 7.887495 AGAGCAATTTTTGTAGAAGAATCCTCT 59.113 33.333 10.51 10.51 0.00 3.69
7112 11173 8.414629 AGCAATTTTTGTAGAAGAATCCTCTT 57.585 30.769 0.00 0.00 44.93 2.85
7121 11182 2.816777 AGAATCCTCTTCAAAGCCCC 57.183 50.000 0.00 0.00 0.00 5.80
7122 11183 1.286257 AGAATCCTCTTCAAAGCCCCC 59.714 52.381 0.00 0.00 0.00 5.40
7136 11197 2.581354 CCCCCTTCTCTCTGTGCG 59.419 66.667 0.00 0.00 0.00 5.34
7137 11198 1.984570 CCCCCTTCTCTCTGTGCGA 60.985 63.158 0.00 0.00 0.00 5.10
7138 11199 1.515020 CCCCTTCTCTCTGTGCGAG 59.485 63.158 0.00 0.00 41.30 5.03
7139 11200 1.515020 CCCTTCTCTCTGTGCGAGG 59.485 63.158 0.00 0.00 40.30 4.63
7140 11201 0.967887 CCCTTCTCTCTGTGCGAGGA 60.968 60.000 0.00 0.00 40.30 3.71
7141 11202 0.891373 CCTTCTCTCTGTGCGAGGAA 59.109 55.000 0.00 0.00 40.30 3.36
7142 11203 1.480137 CCTTCTCTCTGTGCGAGGAAT 59.520 52.381 0.00 0.00 40.30 3.01
7143 11204 2.538437 CTTCTCTCTGTGCGAGGAATG 58.462 52.381 0.00 0.00 40.30 2.67
7144 11205 1.839424 TCTCTCTGTGCGAGGAATGA 58.161 50.000 0.00 0.00 40.30 2.57
7145 11206 2.171003 TCTCTCTGTGCGAGGAATGAA 58.829 47.619 0.00 0.00 40.30 2.57
7146 11207 2.165234 TCTCTCTGTGCGAGGAATGAAG 59.835 50.000 0.00 0.00 40.30 3.02
7147 11208 1.205655 TCTCTGTGCGAGGAATGAAGG 59.794 52.381 0.00 0.00 40.30 3.46
7322 11383 6.405278 TGTACTGTTTCTGATGAAGTCTCA 57.595 37.500 0.00 0.00 35.56 3.27
7380 11441 4.601019 CACCTGAAATGAATGTAATCGGC 58.399 43.478 0.00 0.00 0.00 5.54
7412 11473 1.532523 TGAAATGGCGCTTGACATCA 58.467 45.000 7.64 2.09 41.80 3.07
7413 11474 1.885233 TGAAATGGCGCTTGACATCAA 59.115 42.857 7.64 0.00 41.80 2.57
7429 11490 1.377725 CAAGGGGCAGTGGCTGTAG 60.378 63.158 17.16 1.19 40.87 2.74
7467 11528 2.424557 CTTGCAAGCTGAGACATCTGT 58.575 47.619 14.65 0.00 0.00 3.41
7597 11658 4.274459 GGCTATGTGAATTAGGCTGAACTG 59.726 45.833 0.00 0.00 38.74 3.16
7598 11659 5.118990 GCTATGTGAATTAGGCTGAACTGA 58.881 41.667 0.00 0.00 0.00 3.41
7599 11660 5.586243 GCTATGTGAATTAGGCTGAACTGAA 59.414 40.000 0.00 0.00 0.00 3.02
7600 11661 6.094048 GCTATGTGAATTAGGCTGAACTGAAA 59.906 38.462 0.00 0.00 0.00 2.69
7601 11662 5.689383 TGTGAATTAGGCTGAACTGAAAC 57.311 39.130 0.00 0.00 0.00 2.78
7602 11663 5.129634 TGTGAATTAGGCTGAACTGAAACA 58.870 37.500 0.00 0.00 0.00 2.83
7603 11664 5.239306 TGTGAATTAGGCTGAACTGAAACAG 59.761 40.000 0.00 0.00 37.52 3.16
7647 11708 4.347096 CGTAGACGGCCAACACAA 57.653 55.556 2.24 0.00 35.37 3.33
7652 11713 2.561478 AGACGGCCAACACAAATAGT 57.439 45.000 2.24 0.00 0.00 2.12
7664 11725 6.071952 CCAACACAAATAGTTTCACATAGCCT 60.072 38.462 0.00 0.00 0.00 4.58
7685 11746 1.474143 GGCCTCTGTGAGCATAGAACC 60.474 57.143 0.00 0.54 0.00 3.62
7696 11757 5.517770 GTGAGCATAGAACCATTTGCAAATC 59.482 40.000 21.70 11.73 37.56 2.17
7704 11765 5.774690 AGAACCATTTGCAAATCAACTCCTA 59.225 36.000 21.70 0.00 33.73 2.94
7705 11766 5.649782 ACCATTTGCAAATCAACTCCTAG 57.350 39.130 21.70 7.45 33.73 3.02
7706 11767 5.079643 ACCATTTGCAAATCAACTCCTAGT 58.920 37.500 21.70 5.79 33.73 2.57
7707 11768 6.245408 ACCATTTGCAAATCAACTCCTAGTA 58.755 36.000 21.70 0.00 33.73 1.82
7708 11769 6.719370 ACCATTTGCAAATCAACTCCTAGTAA 59.281 34.615 21.70 0.00 33.73 2.24
7709 11770 7.094205 ACCATTTGCAAATCAACTCCTAGTAAG 60.094 37.037 21.70 5.65 33.73 2.34
7711 11772 8.946085 CATTTGCAAATCAACTCCTAGTAAGTA 58.054 33.333 21.70 0.00 33.73 2.24
7712 11773 8.911918 TTTGCAAATCAACTCCTAGTAAGTAA 57.088 30.769 8.05 0.00 33.73 2.24
7714 11775 8.911918 TGCAAATCAACTCCTAGTAAGTAAAA 57.088 30.769 0.00 0.00 0.00 1.52
7715 11776 9.515226 TGCAAATCAACTCCTAGTAAGTAAAAT 57.485 29.630 0.00 0.00 0.00 1.82
7716 11777 9.774742 GCAAATCAACTCCTAGTAAGTAAAATG 57.225 33.333 0.00 0.00 0.00 2.32
7717 11778 9.774742 CAAATCAACTCCTAGTAAGTAAAATGC 57.225 33.333 0.00 0.00 0.00 3.56
7718 11779 9.515226 AAATCAACTCCTAGTAAGTAAAATGCA 57.485 29.630 0.00 0.00 0.00 3.96
7719 11780 8.723942 ATCAACTCCTAGTAAGTAAAATGCAG 57.276 34.615 0.00 0.00 0.00 4.41
7721 11782 7.817962 TCAACTCCTAGTAAGTAAAATGCAGTC 59.182 37.037 0.00 0.00 0.00 3.51
7722 11783 7.483580 ACTCCTAGTAAGTAAAATGCAGTCT 57.516 36.000 0.00 0.00 0.00 3.24
7724 11785 7.178628 ACTCCTAGTAAGTAAAATGCAGTCTCA 59.821 37.037 0.00 0.00 0.00 3.27
7726 11787 8.035394 TCCTAGTAAGTAAAATGCAGTCTCAAG 58.965 37.037 0.00 0.00 0.00 3.02
7729 11790 8.854614 AGTAAGTAAAATGCAGTCTCAAGAAT 57.145 30.769 0.00 0.00 0.00 2.40
7730 11791 9.289782 AGTAAGTAAAATGCAGTCTCAAGAATT 57.710 29.630 0.00 0.00 0.00 2.17
7731 11792 9.548208 GTAAGTAAAATGCAGTCTCAAGAATTC 57.452 33.333 0.00 0.00 0.00 2.17
7732 11793 7.992754 AGTAAAATGCAGTCTCAAGAATTCT 57.007 32.000 0.88 0.88 0.00 2.40
7733 11794 8.038492 AGTAAAATGCAGTCTCAAGAATTCTC 57.962 34.615 8.78 0.00 0.00 2.87
7734 11795 6.889301 AAAATGCAGTCTCAAGAATTCTCA 57.111 33.333 8.78 0.00 0.00 3.27
7735 11796 6.497785 AAATGCAGTCTCAAGAATTCTCAG 57.502 37.500 8.78 8.14 0.00 3.35
7736 11797 4.879197 TGCAGTCTCAAGAATTCTCAGA 57.121 40.909 8.78 10.39 0.00 3.27
7737 11798 5.219343 TGCAGTCTCAAGAATTCTCAGAA 57.781 39.130 8.78 0.00 0.00 3.02
7738 11799 5.802465 TGCAGTCTCAAGAATTCTCAGAAT 58.198 37.500 8.78 9.65 0.00 2.40
7739 11800 5.642491 TGCAGTCTCAAGAATTCTCAGAATG 59.358 40.000 25.98 25.98 33.39 2.67
7740 11801 5.447548 GCAGTCTCAAGAATTCTCAGAATGC 60.448 44.000 32.37 32.37 44.85 3.56
7809 11870 7.577426 GCCAACAACCATTTATCAGAAATCTCA 60.577 37.037 0.00 0.00 0.00 3.27
7811 11872 7.093322 ACAACCATTTATCAGAAATCTCAGC 57.907 36.000 0.00 0.00 0.00 4.26
7813 11874 6.939132 ACCATTTATCAGAAATCTCAGCAG 57.061 37.500 0.00 0.00 0.00 4.24
7843 11948 4.161189 ACAGATCGTCATGACTTCAGGAAT 59.839 41.667 22.95 5.64 38.46 3.01
7853 11958 3.629855 TGACTTCAGGAATGCAACGAAAA 59.370 39.130 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 3572 0.309612 TTCGAAGCCGGCAAAAGAAC 59.690 50.000 31.54 10.05 36.24 3.01
21 3575 0.310854 AACTTCGAAGCCGGCAAAAG 59.689 50.000 31.54 25.16 36.24 2.27
27 3581 0.931005 GCTGATAACTTCGAAGCCGG 59.069 55.000 24.86 16.17 36.24 6.13
82 3636 2.727298 CGTAGAACGGAAGGAACTCGTC 60.727 54.545 0.00 0.00 35.90 4.20
163 3717 2.695666 CGAGTGGTAGAGTGGAATGGAT 59.304 50.000 0.00 0.00 0.00 3.41
262 3819 4.343526 AGAATGTGGTATCTGCTAGTGGAG 59.656 45.833 0.00 0.00 0.00 3.86
266 3823 5.837979 AGATGAGAATGTGGTATCTGCTAGT 59.162 40.000 0.00 0.00 0.00 2.57
272 3829 5.071519 CCAAGGAGATGAGAATGTGGTATCT 59.928 44.000 0.00 0.00 0.00 1.98
274 3831 4.103785 CCCAAGGAGATGAGAATGTGGTAT 59.896 45.833 0.00 0.00 0.00 2.73
275 3832 3.455910 CCCAAGGAGATGAGAATGTGGTA 59.544 47.826 0.00 0.00 0.00 3.25
285 3870 3.251484 ACTTTGAGTCCCAAGGAGATGA 58.749 45.455 4.62 0.00 35.63 2.92
316 3901 0.892755 AGGTTGCATGAAGGCACATG 59.107 50.000 16.48 16.48 44.86 3.21
323 3908 5.964958 TCCTTAAAAGAGGTTGCATGAAG 57.035 39.130 0.00 0.00 38.04 3.02
325 3910 5.596361 TGTTTCCTTAAAAGAGGTTGCATGA 59.404 36.000 0.00 0.00 38.04 3.07
353 3938 1.135689 CGCACCTGCCAATTTGTACTC 60.136 52.381 0.00 0.00 37.91 2.59
355 3940 0.596082 ACGCACCTGCCAATTTGTAC 59.404 50.000 0.00 0.00 37.91 2.90
373 3962 6.099341 GGTGGATTGTTATGGTCATTTTGAC 58.901 40.000 0.00 0.00 46.23 3.18
430 4024 6.437755 TGGTATGGTATGGTAGTACACTCTT 58.562 40.000 2.06 0.00 0.00 2.85
432 4026 6.688578 CATGGTATGGTATGGTAGTACACTC 58.311 44.000 2.06 0.00 0.00 3.51
433 4027 5.011738 GCATGGTATGGTATGGTAGTACACT 59.988 44.000 2.06 0.00 0.00 3.55
434 4028 5.221561 TGCATGGTATGGTATGGTAGTACAC 60.222 44.000 2.06 0.00 0.00 2.90
435 4029 4.902448 TGCATGGTATGGTATGGTAGTACA 59.098 41.667 2.06 0.00 0.00 2.90
436 4030 5.477607 TGCATGGTATGGTATGGTAGTAC 57.522 43.478 0.00 0.00 0.00 2.73
437 4031 5.782845 TCATGCATGGTATGGTATGGTAGTA 59.217 40.000 25.97 0.00 0.00 1.82
438 4032 4.597075 TCATGCATGGTATGGTATGGTAGT 59.403 41.667 25.97 0.00 0.00 2.73
439 4033 4.937620 GTCATGCATGGTATGGTATGGTAG 59.062 45.833 25.97 0.00 0.00 3.18
440 4034 4.263287 GGTCATGCATGGTATGGTATGGTA 60.263 45.833 25.97 0.00 0.00 3.25
441 4035 3.498481 GGTCATGCATGGTATGGTATGGT 60.498 47.826 25.97 0.00 0.00 3.55
442 4036 3.084039 GGTCATGCATGGTATGGTATGG 58.916 50.000 25.97 0.00 0.00 2.74
443 4037 2.743664 CGGTCATGCATGGTATGGTATG 59.256 50.000 25.97 0.00 0.00 2.39
444 4038 2.637382 TCGGTCATGCATGGTATGGTAT 59.363 45.455 25.97 0.00 0.00 2.73
445 4039 2.043227 TCGGTCATGCATGGTATGGTA 58.957 47.619 25.97 2.13 0.00 3.25
446 4040 0.836606 TCGGTCATGCATGGTATGGT 59.163 50.000 25.97 0.00 0.00 3.55
447 4041 1.875514 CTTCGGTCATGCATGGTATGG 59.124 52.381 25.97 11.45 0.00 2.74
448 4042 1.875514 CCTTCGGTCATGCATGGTATG 59.124 52.381 25.97 13.61 0.00 2.39
449 4043 1.768275 TCCTTCGGTCATGCATGGTAT 59.232 47.619 25.97 0.00 0.00 2.73
450 4044 1.138859 CTCCTTCGGTCATGCATGGTA 59.861 52.381 25.97 5.34 0.00 3.25
451 4045 0.107508 CTCCTTCGGTCATGCATGGT 60.108 55.000 25.97 0.00 0.00 3.55
452 4046 0.816825 CCTCCTTCGGTCATGCATGG 60.817 60.000 25.97 10.79 0.00 3.66
453 4047 0.178767 TCCTCCTTCGGTCATGCATG 59.821 55.000 21.07 21.07 0.00 4.06
454 4048 0.179000 GTCCTCCTTCGGTCATGCAT 59.821 55.000 0.00 0.00 0.00 3.96
455 4049 1.191489 TGTCCTCCTTCGGTCATGCA 61.191 55.000 0.00 0.00 0.00 3.96
456 4050 0.460987 CTGTCCTCCTTCGGTCATGC 60.461 60.000 0.00 0.00 0.00 4.06
472 4067 1.533994 GGCTCTTTTTGGGGGCTGT 60.534 57.895 0.00 0.00 0.00 4.40
473 4068 0.039618 TAGGCTCTTTTTGGGGGCTG 59.960 55.000 0.00 0.00 36.11 4.85
474 4069 0.039764 GTAGGCTCTTTTTGGGGGCT 59.960 55.000 0.00 0.00 38.17 5.19
475 4070 0.970937 GGTAGGCTCTTTTTGGGGGC 60.971 60.000 0.00 0.00 0.00 5.80
476 4071 0.324368 GGGTAGGCTCTTTTTGGGGG 60.324 60.000 0.00 0.00 0.00 5.40
485 4080 2.669240 GTTTGCGGGGTAGGCTCT 59.331 61.111 0.00 0.00 0.00 4.09
486 4081 2.818274 CGTTTGCGGGGTAGGCTC 60.818 66.667 0.00 0.00 0.00 4.70
487 4082 3.600898 GACGTTTGCGGGGTAGGCT 62.601 63.158 0.00 0.00 43.45 4.58
488 4083 3.122971 GACGTTTGCGGGGTAGGC 61.123 66.667 0.00 0.00 43.45 3.93
555 4150 0.750546 TATAGGGCGGGATCGATCGG 60.751 60.000 18.81 13.98 39.00 4.18
556 4151 1.319541 ATATAGGGCGGGATCGATCG 58.680 55.000 18.81 9.36 39.00 3.69
930 4539 4.593864 GATCGAGACGGGCAGGGC 62.594 72.222 0.00 0.00 0.00 5.19
931 4540 3.917760 GGATCGAGACGGGCAGGG 61.918 72.222 0.00 0.00 0.00 4.45
932 4541 4.271816 CGGATCGAGACGGGCAGG 62.272 72.222 3.83 0.00 0.00 4.85
933 4542 4.271816 CCGGATCGAGACGGGCAG 62.272 72.222 19.51 0.00 46.08 4.85
1038 4647 1.512310 GTCGCTGTTCTCGAGGTCG 60.512 63.158 13.56 9.14 36.56 4.79
1121 4730 1.596603 TGCATGGGAGCATATTCGTG 58.403 50.000 0.00 0.00 40.11 4.35
1157 4766 1.669927 GGATGGGAGGAGGAGGAGGA 61.670 65.000 0.00 0.00 0.00 3.71
1172 4781 3.432252 GGCATTAGTTTCGTATCGGGATG 59.568 47.826 0.00 0.00 0.00 3.51
1173 4782 3.660865 GGCATTAGTTTCGTATCGGGAT 58.339 45.455 0.00 0.00 0.00 3.85
1202 4811 2.400158 CCCAATAAAACGGCGGCGA 61.400 57.895 38.93 16.52 0.00 5.54
1233 4845 1.611977 GGAGGGGAAACAAAAGGAACG 59.388 52.381 0.00 0.00 0.00 3.95
1235 4847 2.789399 AGAGGAGGGGAAACAAAAGGAA 59.211 45.455 0.00 0.00 0.00 3.36
1237 4849 2.980246 AGAGGAGGGGAAACAAAAGG 57.020 50.000 0.00 0.00 0.00 3.11
1247 4859 1.045911 CCGGAGAAGAAGAGGAGGGG 61.046 65.000 0.00 0.00 0.00 4.79
1252 4864 1.153745 CACGCCGGAGAAGAAGAGG 60.154 63.158 13.83 0.00 0.00 3.69
1253 4865 0.457851 ATCACGCCGGAGAAGAAGAG 59.542 55.000 13.83 0.00 0.00 2.85
1254 4866 0.456221 GATCACGCCGGAGAAGAAGA 59.544 55.000 13.83 1.87 0.00 2.87
1255 4867 0.528684 GGATCACGCCGGAGAAGAAG 60.529 60.000 13.83 0.00 0.00 2.85
1338 4950 0.099613 CTGACGTCACCAGATCGGAG 59.900 60.000 15.76 0.00 38.63 4.63
1388 5000 0.038618 AACAAATTTTCGCCGCCTCC 60.039 50.000 0.00 0.00 0.00 4.30
1389 5001 1.719246 GAAACAAATTTTCGCCGCCTC 59.281 47.619 0.00 0.00 0.00 4.70
1472 5084 6.314784 CAATTTAGTTTCACGAATCTGGGAC 58.685 40.000 0.00 0.00 0.00 4.46
1517 5151 6.816140 CACAAAACACCAAATACTTTCCAACT 59.184 34.615 0.00 0.00 0.00 3.16
1556 5232 9.030301 CAAAGTAAAACAATTACTCCCACAAAG 57.970 33.333 1.68 0.00 34.41 2.77
1557 5233 8.532819 ACAAAGTAAAACAATTACTCCCACAAA 58.467 29.630 1.68 0.00 34.41 2.83
1599 5275 2.802414 GGACCCGACGAACGAACG 60.802 66.667 0.00 6.43 45.77 3.95
1624 5301 2.352960 GACCTGGATGCACGAGAAAATC 59.647 50.000 0.00 0.00 0.00 2.17
1626 5303 1.808411 GACCTGGATGCACGAGAAAA 58.192 50.000 0.00 0.00 0.00 2.29
1717 5394 5.241506 ACATGACATGTCGGAAAATTCAGTT 59.758 36.000 20.54 0.00 39.92 3.16
1904 5581 0.107945 GGTACTTGAGCCTCTGCCTG 60.108 60.000 0.00 0.00 38.69 4.85
2337 6042 3.439293 ACTGATAGCATCGTTCTCGTTG 58.561 45.455 0.00 0.00 39.05 4.10
2376 6081 5.163311 TGTTCTTGAGAGAAATCACACCTCA 60.163 40.000 0.00 0.00 43.21 3.86
2385 6090 6.395629 CATGGCAATTGTTCTTGAGAGAAAT 58.604 36.000 7.40 0.00 43.21 2.17
2393 6098 2.477375 GTGTGCATGGCAATTGTTCTTG 59.523 45.455 7.40 9.26 41.47 3.02
2431 6137 5.005203 GCAGAGATCACATTAGAGAAACACG 59.995 44.000 0.00 0.00 0.00 4.49
2491 6199 4.702131 GCAGAGGAAAAGCTAAATGAAGGA 59.298 41.667 0.00 0.00 0.00 3.36
2619 6638 6.149474 ACATCGATCACTGAAACTTAAAAGGG 59.851 38.462 0.00 0.00 0.00 3.95
2626 6645 7.743104 GTGATAAACATCGATCACTGAAACTT 58.257 34.615 7.22 0.00 45.60 2.66
2731 6751 6.870971 TGTTATAACCAGTGAACAGGAAAC 57.129 37.500 13.01 0.00 0.00 2.78
2769 6789 6.214208 TCCCAGAATATACCAGATGAATCCTG 59.786 42.308 0.00 0.00 0.00 3.86
2780 6800 5.836898 ACTGTCGTTATCCCAGAATATACCA 59.163 40.000 0.00 0.00 0.00 3.25
2843 6863 6.239217 TCCACATCACTAAGCATGATAAGT 57.761 37.500 0.00 0.00 0.00 2.24
3090 7110 8.322091 GGGAACATTTAGTAGCTATCATATGGT 58.678 37.037 2.13 0.00 0.00 3.55
3154 7174 5.059833 GCTCAAATATACTAGCTGGCAGTT 58.940 41.667 17.16 13.28 32.18 3.16
3233 7253 9.239002 CTCTAGTATCTGTAAATACTTGCACAC 57.761 37.037 2.21 0.00 41.54 3.82
3248 7268 7.545489 TGCATGCATTAGATCTCTAGTATCTG 58.455 38.462 18.46 6.14 35.36 2.90
3249 7269 7.715266 TGCATGCATTAGATCTCTAGTATCT 57.285 36.000 18.46 12.78 37.46 1.98
3364 7390 1.208293 GCTCTAGCTAGCCAACTGGTT 59.792 52.381 16.35 0.00 36.45 3.67
3390 7416 2.180017 GCGGGCTGTGAGCATTTG 59.820 61.111 0.00 0.00 44.75 2.32
3436 7462 3.594603 TTCAGGAAGAAAGGCGACTAG 57.405 47.619 0.00 0.00 42.68 2.57
3437 7463 3.070446 TGTTTCAGGAAGAAAGGCGACTA 59.930 43.478 0.00 0.00 46.34 2.59
3438 7464 2.158813 TGTTTCAGGAAGAAAGGCGACT 60.159 45.455 0.00 0.00 46.34 4.18
3439 7465 2.218603 TGTTTCAGGAAGAAAGGCGAC 58.781 47.619 0.00 0.00 46.34 5.19
3440 7466 2.631160 TGTTTCAGGAAGAAAGGCGA 57.369 45.000 0.00 0.00 46.34 5.54
3441 7467 2.669391 GCATGTTTCAGGAAGAAAGGCG 60.669 50.000 0.00 0.00 46.34 5.52
3442 7468 2.353109 GGCATGTTTCAGGAAGAAAGGC 60.353 50.000 0.00 0.00 46.34 4.35
3443 7469 2.892852 TGGCATGTTTCAGGAAGAAAGG 59.107 45.455 0.00 0.00 46.34 3.11
3444 7470 3.305608 GGTGGCATGTTTCAGGAAGAAAG 60.306 47.826 0.00 0.00 46.34 2.62
3550 7576 7.829211 CCCTAAATCCTCAGTGAAGTAATCAAA 59.171 37.037 0.00 0.00 40.50 2.69
3567 7593 1.988846 AGCATAGGCCTCCCTAAATCC 59.011 52.381 9.68 0.00 46.47 3.01
3616 7642 1.678360 CAGTTGCAGCTAAAACGCAG 58.322 50.000 1.52 0.00 36.91 5.18
3680 7706 7.016153 AGGCGGAAATCATTATATTACAGGA 57.984 36.000 0.00 0.00 0.00 3.86
3916 7943 5.322754 TATCTTAGGATACCTCCAACGGAG 58.677 45.833 2.86 2.86 44.79 4.63
3917 7944 3.675348 TCTTAGGATACCTCCAACGGA 57.325 47.619 0.00 0.00 44.79 4.69
3931 7958 9.678260 CCATAAGAAATGAAGGGATATCTTAGG 57.322 37.037 2.05 0.00 34.11 2.69
3970 7997 5.702670 CAGAGACAGCTCAAACTTTCCATTA 59.297 40.000 0.00 0.00 43.81 1.90
4047 8074 3.505680 CCGATGACAAATTCTGTTTGGGA 59.494 43.478 5.62 0.00 38.84 4.37
4119 8146 9.366216 TCATTCTCGGATATAATTAAATCCACG 57.634 33.333 5.06 0.00 41.57 4.94
4229 8256 5.935206 TGAACGGATACTGCTGTGAAATTTA 59.065 36.000 6.48 0.00 0.00 1.40
4230 8257 4.759693 TGAACGGATACTGCTGTGAAATTT 59.240 37.500 6.48 0.00 0.00 1.82
4232 8259 3.937814 TGAACGGATACTGCTGTGAAAT 58.062 40.909 6.48 0.00 0.00 2.17
4233 8260 3.394674 TGAACGGATACTGCTGTGAAA 57.605 42.857 6.48 0.00 0.00 2.69
4235 8262 2.760650 AGATGAACGGATACTGCTGTGA 59.239 45.455 6.48 0.00 0.00 3.58
4236 8263 3.170791 AGATGAACGGATACTGCTGTG 57.829 47.619 6.48 0.00 0.00 3.66
4391 8435 5.633182 CCAAATTTAGAAATGTGGTTCGGTG 59.367 40.000 13.97 0.00 45.05 4.94
4477 8521 6.375455 AGCAACCTACAAATAAGTCCTTGATG 59.625 38.462 0.00 0.00 0.00 3.07
4696 8741 1.677217 CCTCCTTTCAGAAGAAGGCCG 60.677 57.143 0.00 0.00 30.05 6.13
4878 8923 3.563390 GCCAATAAGCTTTTTGCCAACAA 59.437 39.130 20.39 0.00 44.23 2.83
4885 8930 4.630111 TCACAAGGCCAATAAGCTTTTTG 58.370 39.130 19.26 19.26 32.54 2.44
4948 8993 7.550196 TCTCATCAATCGAAGAATCAAATGACA 59.450 33.333 0.00 0.00 43.58 3.58
5225 9270 9.665264 AGAAGAATGAAAACAATTTAGTTCGTC 57.335 29.630 0.00 0.00 34.50 4.20
5407 9452 6.540189 CACAACCTCTAAGAAATCTGGTATGG 59.460 42.308 0.00 0.00 0.00 2.74
5482 9528 9.161629 CCGGAAATAGTGCATCATATATTACAA 57.838 33.333 0.00 0.00 0.00 2.41
5483 9529 7.279981 GCCGGAAATAGTGCATCATATATTACA 59.720 37.037 5.05 0.00 0.00 2.41
5484 9530 7.279981 TGCCGGAAATAGTGCATCATATATTAC 59.720 37.037 5.05 0.00 0.00 1.89
5645 9691 6.016360 TGTTCACATATTTGACTTCAAGGGTG 60.016 38.462 0.00 0.00 37.15 4.61
5693 9739 9.659830 AAGTTTGCTAGACTTATTGTTTAAACG 57.340 29.630 13.45 1.62 35.68 3.60
5698 9744 9.555727 TGACTAAGTTTGCTAGACTTATTGTTT 57.444 29.630 0.00 0.00 38.51 2.83
5916 9973 8.567285 AATGAATCTACCTTTGGTACTTTCAG 57.433 34.615 15.56 1.35 37.37 3.02
6014 10071 4.214119 CCTGCATACCTTCCATAACGATTG 59.786 45.833 0.00 0.00 0.00 2.67
6387 10446 0.321298 TAGGCCCAAGCGAGTCAAAC 60.321 55.000 0.00 0.00 41.24 2.93
6400 10459 5.127031 ACATTTGACAACACATATTAGGCCC 59.873 40.000 0.00 0.00 0.00 5.80
6427 10486 4.206477 TCAGAGCCAATCGAATCTTGAA 57.794 40.909 0.00 0.00 0.00 2.69
6669 10729 0.534877 AAGATGGTGCACGCAGAACA 60.535 50.000 11.45 1.84 0.00 3.18
6677 10737 2.706190 ACTATAGGGGAAGATGGTGCAC 59.294 50.000 8.80 8.80 0.00 4.57
6681 10741 5.970640 TGAAGAAACTATAGGGGAAGATGGT 59.029 40.000 4.43 0.00 0.00 3.55
6682 10742 6.100424 ACTGAAGAAACTATAGGGGAAGATGG 59.900 42.308 4.43 0.00 0.00 3.51
6683 10743 7.130681 ACTGAAGAAACTATAGGGGAAGATG 57.869 40.000 4.43 0.00 0.00 2.90
6684 10744 7.757242 AACTGAAGAAACTATAGGGGAAGAT 57.243 36.000 4.43 0.00 0.00 2.40
6686 10746 7.491696 CGTAAACTGAAGAAACTATAGGGGAAG 59.508 40.741 4.43 0.00 0.00 3.46
6687 10747 7.325694 CGTAAACTGAAGAAACTATAGGGGAA 58.674 38.462 4.43 0.00 0.00 3.97
6688 10748 6.628844 GCGTAAACTGAAGAAACTATAGGGGA 60.629 42.308 4.43 0.00 0.00 4.81
6689 10749 5.522824 GCGTAAACTGAAGAAACTATAGGGG 59.477 44.000 4.43 0.00 0.00 4.79
6690 10750 6.103997 TGCGTAAACTGAAGAAACTATAGGG 58.896 40.000 4.43 0.00 0.00 3.53
6691 10751 7.544566 TCTTGCGTAAACTGAAGAAACTATAGG 59.455 37.037 4.43 0.00 0.00 2.57
6692 10752 8.462143 TCTTGCGTAAACTGAAGAAACTATAG 57.538 34.615 0.00 0.00 0.00 1.31
6693 10753 8.997621 ATCTTGCGTAAACTGAAGAAACTATA 57.002 30.769 0.00 0.00 0.00 1.31
6694 10754 7.907214 ATCTTGCGTAAACTGAAGAAACTAT 57.093 32.000 0.00 0.00 0.00 2.12
6695 10755 8.086522 AGTATCTTGCGTAAACTGAAGAAACTA 58.913 33.333 0.00 0.00 0.00 2.24
6696 10756 6.929606 AGTATCTTGCGTAAACTGAAGAAACT 59.070 34.615 0.00 0.00 0.00 2.66
6697 10757 7.118422 AGTATCTTGCGTAAACTGAAGAAAC 57.882 36.000 0.00 0.00 0.00 2.78
6698 10758 7.095355 GGAAGTATCTTGCGTAAACTGAAGAAA 60.095 37.037 0.00 0.00 0.00 2.52
6699 10759 6.367969 GGAAGTATCTTGCGTAAACTGAAGAA 59.632 38.462 0.00 0.00 0.00 2.52
6700 10760 5.867716 GGAAGTATCTTGCGTAAACTGAAGA 59.132 40.000 0.00 0.00 0.00 2.87
6701 10761 5.869888 AGGAAGTATCTTGCGTAAACTGAAG 59.130 40.000 0.00 0.00 0.00 3.02
6702 10762 5.637810 CAGGAAGTATCTTGCGTAAACTGAA 59.362 40.000 0.00 0.00 0.00 3.02
6703 10763 5.168569 CAGGAAGTATCTTGCGTAAACTGA 58.831 41.667 0.00 0.00 0.00 3.41
6704 10764 4.330074 CCAGGAAGTATCTTGCGTAAACTG 59.670 45.833 0.00 0.00 31.59 3.16
6705 10765 4.020485 ACCAGGAAGTATCTTGCGTAAACT 60.020 41.667 0.00 0.00 31.59 2.66
6744 10804 9.831737 GAGCAATGCATACATATTAAGTAAAGG 57.168 33.333 8.35 0.00 34.62 3.11
6748 10808 8.597167 AGGAGAGCAATGCATACATATTAAGTA 58.403 33.333 8.35 0.00 34.62 2.24
6922 10983 4.353777 ACATAGGAGCTGAAGGTCAGTAA 58.646 43.478 11.34 0.00 45.94 2.24
6987 11048 1.769026 GGGGGCTTTGAAGAGGATTC 58.231 55.000 0.00 0.00 0.00 2.52
7031 11092 5.429957 AACAACAATGCTCTCTTGTCTTC 57.570 39.130 0.00 0.00 35.84 2.87
7032 11093 6.058183 AGTAACAACAATGCTCTCTTGTCTT 58.942 36.000 0.00 0.00 35.84 3.01
7033 11094 5.615289 AGTAACAACAATGCTCTCTTGTCT 58.385 37.500 0.00 0.00 35.84 3.41
7034 11095 5.931441 AGTAACAACAATGCTCTCTTGTC 57.069 39.130 0.00 0.00 35.84 3.18
7035 11096 6.936900 ACATAGTAACAACAATGCTCTCTTGT 59.063 34.615 0.00 0.00 38.44 3.16
7036 11097 7.369803 ACATAGTAACAACAATGCTCTCTTG 57.630 36.000 0.00 0.00 0.00 3.02
7037 11098 7.986085 AACATAGTAACAACAATGCTCTCTT 57.014 32.000 0.00 0.00 0.00 2.85
7038 11099 7.573843 GCAAACATAGTAACAACAATGCTCTCT 60.574 37.037 0.00 0.00 0.00 3.10
7039 11100 6.524586 GCAAACATAGTAACAACAATGCTCTC 59.475 38.462 0.00 0.00 0.00 3.20
7040 11101 6.016360 TGCAAACATAGTAACAACAATGCTCT 60.016 34.615 0.00 0.00 0.00 4.09
7041 11102 6.148948 TGCAAACATAGTAACAACAATGCTC 58.851 36.000 0.00 0.00 0.00 4.26
7042 11103 6.083098 TGCAAACATAGTAACAACAATGCT 57.917 33.333 0.00 0.00 0.00 3.79
7043 11104 5.345741 CCTGCAAACATAGTAACAACAATGC 59.654 40.000 0.00 0.00 0.00 3.56
7044 11105 6.446318 ACCTGCAAACATAGTAACAACAATG 58.554 36.000 0.00 0.00 0.00 2.82
7045 11106 6.648879 ACCTGCAAACATAGTAACAACAAT 57.351 33.333 0.00 0.00 0.00 2.71
7046 11107 6.993308 TCTACCTGCAAACATAGTAACAACAA 59.007 34.615 0.00 0.00 0.00 2.83
7047 11108 6.526526 TCTACCTGCAAACATAGTAACAACA 58.473 36.000 0.00 0.00 0.00 3.33
7048 11109 6.092259 CCTCTACCTGCAAACATAGTAACAAC 59.908 42.308 0.00 0.00 0.00 3.32
7049 11110 6.014070 TCCTCTACCTGCAAACATAGTAACAA 60.014 38.462 0.00 0.00 0.00 2.83
7050 11111 5.482526 TCCTCTACCTGCAAACATAGTAACA 59.517 40.000 0.00 0.00 0.00 2.41
7051 11112 5.974108 TCCTCTACCTGCAAACATAGTAAC 58.026 41.667 0.00 0.00 0.00 2.50
7052 11113 6.808321 ATCCTCTACCTGCAAACATAGTAA 57.192 37.500 0.00 0.00 0.00 2.24
7053 11114 6.183360 GGAATCCTCTACCTGCAAACATAGTA 60.183 42.308 0.00 0.00 0.00 1.82
7054 11115 5.396884 GGAATCCTCTACCTGCAAACATAGT 60.397 44.000 0.00 0.00 0.00 2.12
7055 11116 5.059833 GGAATCCTCTACCTGCAAACATAG 58.940 45.833 0.00 0.00 0.00 2.23
7056 11117 4.721776 AGGAATCCTCTACCTGCAAACATA 59.278 41.667 0.00 0.00 32.39 2.29
7057 11118 3.525199 AGGAATCCTCTACCTGCAAACAT 59.475 43.478 0.00 0.00 32.39 2.71
7058 11119 2.912956 AGGAATCCTCTACCTGCAAACA 59.087 45.455 0.00 0.00 32.39 2.83
7059 11120 3.274288 CAGGAATCCTCTACCTGCAAAC 58.726 50.000 0.00 0.00 43.32 2.93
7060 11121 3.634397 CAGGAATCCTCTACCTGCAAA 57.366 47.619 0.00 0.00 43.32 3.68
7065 11126 2.559381 ACAGCAGGAATCCTCTACCT 57.441 50.000 0.00 0.00 34.02 3.08
7066 11127 3.567397 TCTACAGCAGGAATCCTCTACC 58.433 50.000 0.00 0.00 0.00 3.18
7067 11128 3.005367 GCTCTACAGCAGGAATCCTCTAC 59.995 52.174 0.00 0.00 46.06 2.59
7068 11129 3.226777 GCTCTACAGCAGGAATCCTCTA 58.773 50.000 0.00 0.00 46.06 2.43
7069 11130 2.038659 GCTCTACAGCAGGAATCCTCT 58.961 52.381 0.00 0.00 46.06 3.69
7070 11131 2.524569 GCTCTACAGCAGGAATCCTC 57.475 55.000 0.00 0.00 46.06 3.71
7081 11142 9.766277 GATTCTTCTACAAAAATTGCTCTACAG 57.234 33.333 0.00 0.00 0.00 2.74
7082 11143 8.730680 GGATTCTTCTACAAAAATTGCTCTACA 58.269 33.333 0.00 0.00 0.00 2.74
7083 11144 8.951243 AGGATTCTTCTACAAAAATTGCTCTAC 58.049 33.333 0.00 0.00 0.00 2.59
7084 11145 9.167311 GAGGATTCTTCTACAAAAATTGCTCTA 57.833 33.333 0.00 0.00 0.00 2.43
7085 11146 7.887495 AGAGGATTCTTCTACAAAAATTGCTCT 59.113 33.333 0.00 0.00 0.00 4.09
7086 11147 8.049655 AGAGGATTCTTCTACAAAAATTGCTC 57.950 34.615 0.00 0.00 0.00 4.26
7087 11148 8.414629 AAGAGGATTCTTCTACAAAAATTGCT 57.585 30.769 0.00 0.00 39.46 3.91
7101 11162 2.291865 GGGGGCTTTGAAGAGGATTCTT 60.292 50.000 0.00 0.00 46.22 2.52
7102 11163 1.286257 GGGGGCTTTGAAGAGGATTCT 59.714 52.381 0.00 0.00 34.29 2.40
7103 11164 1.769026 GGGGGCTTTGAAGAGGATTC 58.231 55.000 0.00 0.00 0.00 2.52
7119 11180 1.984570 TCGCACAGAGAGAAGGGGG 60.985 63.158 0.00 0.00 0.00 5.40
7120 11181 3.700109 TCGCACAGAGAGAAGGGG 58.300 61.111 0.00 0.00 0.00 4.79
7128 11189 1.205655 TCCTTCATTCCTCGCACAGAG 59.794 52.381 0.00 0.00 46.44 3.35
7129 11190 1.266178 TCCTTCATTCCTCGCACAGA 58.734 50.000 0.00 0.00 0.00 3.41
7130 11191 2.005451 CTTCCTTCATTCCTCGCACAG 58.995 52.381 0.00 0.00 0.00 3.66
7131 11192 1.623311 TCTTCCTTCATTCCTCGCACA 59.377 47.619 0.00 0.00 0.00 4.57
7132 11193 2.003301 GTCTTCCTTCATTCCTCGCAC 58.997 52.381 0.00 0.00 0.00 5.34
7133 11194 1.623311 TGTCTTCCTTCATTCCTCGCA 59.377 47.619 0.00 0.00 0.00 5.10
7134 11195 2.386661 TGTCTTCCTTCATTCCTCGC 57.613 50.000 0.00 0.00 0.00 5.03
7135 11196 4.081972 TCTCTTGTCTTCCTTCATTCCTCG 60.082 45.833 0.00 0.00 0.00 4.63
7136 11197 5.413309 TCTCTTGTCTTCCTTCATTCCTC 57.587 43.478 0.00 0.00 0.00 3.71
7137 11198 4.323409 GCTCTCTTGTCTTCCTTCATTCCT 60.323 45.833 0.00 0.00 0.00 3.36
7138 11199 3.938334 GCTCTCTTGTCTTCCTTCATTCC 59.062 47.826 0.00 0.00 0.00 3.01
7139 11200 4.573900 TGCTCTCTTGTCTTCCTTCATTC 58.426 43.478 0.00 0.00 0.00 2.67
7140 11201 4.630644 TGCTCTCTTGTCTTCCTTCATT 57.369 40.909 0.00 0.00 0.00 2.57
7141 11202 4.840716 ATGCTCTCTTGTCTTCCTTCAT 57.159 40.909 0.00 0.00 0.00 2.57
7142 11203 4.202398 ACAATGCTCTCTTGTCTTCCTTCA 60.202 41.667 0.00 0.00 31.29 3.02
7143 11204 4.322567 ACAATGCTCTCTTGTCTTCCTTC 58.677 43.478 0.00 0.00 31.29 3.46
7144 11205 4.363991 ACAATGCTCTCTTGTCTTCCTT 57.636 40.909 0.00 0.00 31.29 3.36
7145 11206 4.070716 CAACAATGCTCTCTTGTCTTCCT 58.929 43.478 0.00 0.00 35.84 3.36
7146 11207 3.817647 ACAACAATGCTCTCTTGTCTTCC 59.182 43.478 0.00 0.00 35.84 3.46
7147 11208 5.429957 AACAACAATGCTCTCTTGTCTTC 57.570 39.130 0.00 0.00 35.84 2.87
7322 11383 5.299279 AGAAAGACAACATGACAACGGATTT 59.701 36.000 0.00 0.00 0.00 2.17
7380 11441 4.728882 GCGCCATTTCAAGAAGACTGTATG 60.729 45.833 0.00 0.00 0.00 2.39
7412 11473 1.133809 TTCTACAGCCACTGCCCCTT 61.134 55.000 0.00 0.00 38.69 3.95
7413 11474 1.538876 TTCTACAGCCACTGCCCCT 60.539 57.895 0.00 0.00 38.69 4.79
7414 11475 1.377333 GTTCTACAGCCACTGCCCC 60.377 63.158 0.00 0.00 38.69 5.80
7415 11476 1.377333 GGTTCTACAGCCACTGCCC 60.377 63.158 0.00 0.00 38.69 5.36
7467 11528 6.928979 TTGTTTGTAACAAGAGGATTCGAA 57.071 33.333 0.00 0.00 45.79 3.71
7494 11555 1.074775 GTTCACCCCTGCATCCACA 59.925 57.895 0.00 0.00 0.00 4.17
7569 11630 3.072184 AGCCTAATTCACATAGCCTCAGG 59.928 47.826 0.00 0.00 0.00 3.86
7583 11644 4.729868 ACCTGTTTCAGTTCAGCCTAATT 58.270 39.130 0.00 0.00 0.00 1.40
7597 11658 2.567985 TCCGTTTCAAGGACCTGTTTC 58.432 47.619 0.00 0.00 31.86 2.78
7598 11659 2.721425 TCCGTTTCAAGGACCTGTTT 57.279 45.000 0.00 0.00 31.86 2.83
7635 11696 2.952978 TGAAACTATTTGTGTTGGCCGT 59.047 40.909 0.00 0.00 0.00 5.68
7639 11700 6.071952 AGGCTATGTGAAACTATTTGTGTTGG 60.072 38.462 0.00 0.00 38.04 3.77
7647 11708 3.203040 AGGCCAGGCTATGTGAAACTATT 59.797 43.478 12.43 0.00 38.04 1.73
7652 11713 1.065199 CAGAGGCCAGGCTATGTGAAA 60.065 52.381 12.43 0.00 0.00 2.69
7664 11725 1.208052 GTTCTATGCTCACAGAGGCCA 59.792 52.381 5.01 0.00 35.76 5.36
7685 11746 7.820648 ACTTACTAGGAGTTGATTTGCAAATG 58.179 34.615 28.67 13.17 38.44 2.32
7696 11757 7.819900 AGACTGCATTTTACTTACTAGGAGTTG 59.180 37.037 6.38 1.38 0.00 3.16
7704 11765 8.854614 ATTCTTGAGACTGCATTTTACTTACT 57.145 30.769 0.00 0.00 0.00 2.24
7705 11766 9.548208 GAATTCTTGAGACTGCATTTTACTTAC 57.452 33.333 0.00 0.00 0.00 2.34
7706 11767 9.507329 AGAATTCTTGAGACTGCATTTTACTTA 57.493 29.630 0.88 0.00 0.00 2.24
7707 11768 8.401490 AGAATTCTTGAGACTGCATTTTACTT 57.599 30.769 0.88 0.00 0.00 2.24
7708 11769 7.663081 TGAGAATTCTTGAGACTGCATTTTACT 59.337 33.333 9.87 0.00 0.00 2.24
7709 11770 7.810658 TGAGAATTCTTGAGACTGCATTTTAC 58.189 34.615 9.87 0.00 0.00 2.01
7711 11772 6.713903 TCTGAGAATTCTTGAGACTGCATTTT 59.286 34.615 9.87 0.00 0.00 1.82
7712 11773 6.236409 TCTGAGAATTCTTGAGACTGCATTT 58.764 36.000 9.87 0.00 0.00 2.32
7714 11775 5.417754 TCTGAGAATTCTTGAGACTGCAT 57.582 39.130 9.87 0.00 0.00 3.96
7715 11776 4.879197 TCTGAGAATTCTTGAGACTGCA 57.121 40.909 9.87 0.00 0.00 4.41
7716 11777 5.447548 GCATTCTGAGAATTCTTGAGACTGC 60.448 44.000 26.94 26.94 35.92 4.40
7717 11778 5.642491 TGCATTCTGAGAATTCTTGAGACTG 59.358 40.000 20.43 20.43 0.00 3.51
7718 11779 5.802465 TGCATTCTGAGAATTCTTGAGACT 58.198 37.500 9.87 6.03 0.00 3.24
7719 11780 6.072838 TGTTGCATTCTGAGAATTCTTGAGAC 60.073 38.462 9.87 6.41 0.00 3.36
7721 11782 6.250344 TGTTGCATTCTGAGAATTCTTGAG 57.750 37.500 9.87 9.04 0.00 3.02
7722 11783 6.263842 ACTTGTTGCATTCTGAGAATTCTTGA 59.736 34.615 9.87 8.56 0.00 3.02
7724 11785 6.645790 ACTTGTTGCATTCTGAGAATTCTT 57.354 33.333 9.87 0.00 0.00 2.52
7726 11787 8.801715 TTTTACTTGTTGCATTCTGAGAATTC 57.198 30.769 4.67 0.91 0.00 2.17
7729 11790 6.642131 GCATTTTACTTGTTGCATTCTGAGAA 59.358 34.615 0.00 0.00 35.22 2.87
7730 11791 6.151691 GCATTTTACTTGTTGCATTCTGAGA 58.848 36.000 0.00 0.00 35.22 3.27
7731 11792 5.921976 TGCATTTTACTTGTTGCATTCTGAG 59.078 36.000 0.00 0.00 39.98 3.35
7732 11793 5.840715 TGCATTTTACTTGTTGCATTCTGA 58.159 33.333 0.00 0.00 39.98 3.27
7733 11794 5.693104 ACTGCATTTTACTTGTTGCATTCTG 59.307 36.000 0.00 0.00 43.51 3.02
7734 11795 5.846203 ACTGCATTTTACTTGTTGCATTCT 58.154 33.333 0.00 0.00 43.51 2.40
7735 11796 5.922544 AGACTGCATTTTACTTGTTGCATTC 59.077 36.000 6.12 6.12 43.51 2.67
7736 11797 5.846203 AGACTGCATTTTACTTGTTGCATT 58.154 33.333 0.00 0.00 43.51 3.56
7737 11798 5.009911 TGAGACTGCATTTTACTTGTTGCAT 59.990 36.000 0.00 0.00 43.51 3.96
7738 11799 4.337836 TGAGACTGCATTTTACTTGTTGCA 59.662 37.500 0.00 0.00 42.41 4.08
7739 11800 4.858935 TGAGACTGCATTTTACTTGTTGC 58.141 39.130 0.00 0.00 35.67 4.17
7740 11801 6.728200 TCTTGAGACTGCATTTTACTTGTTG 58.272 36.000 0.00 0.00 0.00 3.33
7826 11931 2.349590 TGCATTCCTGAAGTCATGACG 58.650 47.619 19.85 5.80 36.20 4.35
7843 11948 3.911365 CGCATAAATGAGTTTTCGTTGCA 59.089 39.130 0.00 0.00 32.91 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.