Multiple sequence alignment - TraesCS3A01G363600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G363600 chr3A 100.000 3967 0 0 1 3967 611955405 611951439 0.000000e+00 7326
1 TraesCS3A01G363600 chr3D 89.873 2439 156 40 1551 3967 469382173 469379804 0.000000e+00 3051
2 TraesCS3A01G363600 chr3D 86.203 993 69 28 284 1265 469383647 469382712 0.000000e+00 1013
3 TraesCS3A01G363600 chr3D 90.526 190 11 2 6 188 469384389 469384200 1.100000e-60 244
4 TraesCS3A01G363600 chr3B 91.926 867 52 10 2354 3212 623662768 623661912 0.000000e+00 1197
5 TraesCS3A01G363600 chr3B 87.703 553 40 11 732 1265 623664135 623663592 1.570000e-173 619
6 TraesCS3A01G363600 chr3B 93.668 379 24 0 3589 3967 623661289 623660911 5.750000e-158 568
7 TraesCS3A01G363600 chr3B 90.261 421 22 6 1689 2109 623663254 623662853 2.100000e-147 532
8 TraesCS3A01G363600 chr3B 91.561 237 15 4 3354 3589 623661623 623661391 4.950000e-84 322
9 TraesCS3A01G363600 chr3B 92.611 203 15 0 6 208 623664777 623664575 3.880000e-75 292
10 TraesCS3A01G363600 chr7A 87.448 239 30 0 3728 3966 216787190 216786952 3.900000e-70 276
11 TraesCS3A01G363600 chr7D 86.192 239 33 0 3728 3966 204772798 204772560 3.930000e-65 259
12 TraesCS3A01G363600 chr7B 84.937 239 36 0 3728 3966 169269361 169269123 3.960000e-60 243


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G363600 chr3A 611951439 611955405 3966 True 7326.000000 7326 100.000000 1 3967 1 chr3A.!!$R1 3966
1 TraesCS3A01G363600 chr3D 469379804 469384389 4585 True 1436.000000 3051 88.867333 6 3967 3 chr3D.!!$R1 3961
2 TraesCS3A01G363600 chr3B 623660911 623664777 3866 True 588.333333 1197 91.288333 6 3967 6 chr3B.!!$R1 3961

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
972 1865 0.167033 CTCGATCGATAGCGTCTGGG 59.833 60.0 19.78 0.0 38.98 4.45 F
1710 3063 0.038343 ATTTGTGCCATTGTGCCGTC 60.038 50.0 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2185 3540 1.587054 CCGCGGGGCTAGATAGAAG 59.413 63.158 20.10 0.00 0.00 2.85 R
3115 4490 0.107654 GCCCTGGTGCACCTTACTAG 60.108 60.000 34.75 23.06 36.82 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.607441 CCTTCGACAATATCCTGATTAATTCA 57.393 34.615 0.00 0.00 0.00 2.57
41 42 3.744940 ATTCACACCCACATCTTCCAT 57.255 42.857 0.00 0.00 0.00 3.41
46 47 2.291153 ACACCCACATCTTCCATTCCAG 60.291 50.000 0.00 0.00 0.00 3.86
96 97 6.147821 GTGCAACTCAACATCACTATGTAAGT 59.852 38.462 0.00 0.00 45.79 2.24
132 140 3.068165 CCGCTAGATATGTGAGGTGTCAA 59.932 47.826 0.00 0.00 33.27 3.18
167 175 4.570772 TCCGCCAGAAATAGAAAAAGATCG 59.429 41.667 0.00 0.00 0.00 3.69
188 196 3.677976 CGTTGAGAGCCCGTTACCTTATT 60.678 47.826 0.00 0.00 0.00 1.40
189 197 4.259356 GTTGAGAGCCCGTTACCTTATTT 58.741 43.478 0.00 0.00 0.00 1.40
190 198 3.869065 TGAGAGCCCGTTACCTTATTTG 58.131 45.455 0.00 0.00 0.00 2.32
191 199 3.516300 TGAGAGCCCGTTACCTTATTTGA 59.484 43.478 0.00 0.00 0.00 2.69
192 200 4.020039 TGAGAGCCCGTTACCTTATTTGAA 60.020 41.667 0.00 0.00 0.00 2.69
193 201 4.259356 AGAGCCCGTTACCTTATTTGAAC 58.741 43.478 0.00 0.00 0.00 3.18
194 202 4.019591 AGAGCCCGTTACCTTATTTGAACT 60.020 41.667 0.00 0.00 0.00 3.01
195 203 4.007659 AGCCCGTTACCTTATTTGAACTG 58.992 43.478 0.00 0.00 0.00 3.16
196 204 3.754850 GCCCGTTACCTTATTTGAACTGT 59.245 43.478 0.00 0.00 0.00 3.55
197 205 4.937015 GCCCGTTACCTTATTTGAACTGTA 59.063 41.667 0.00 0.00 0.00 2.74
198 206 5.064325 GCCCGTTACCTTATTTGAACTGTAG 59.936 44.000 0.00 0.00 0.00 2.74
199 207 6.400568 CCCGTTACCTTATTTGAACTGTAGA 58.599 40.000 0.00 0.00 0.00 2.59
200 208 7.046033 CCCGTTACCTTATTTGAACTGTAGAT 58.954 38.462 0.00 0.00 0.00 1.98
201 209 7.224167 CCCGTTACCTTATTTGAACTGTAGATC 59.776 40.741 0.00 0.00 0.00 2.75
202 210 7.762615 CCGTTACCTTATTTGAACTGTAGATCA 59.237 37.037 0.00 0.00 0.00 2.92
203 211 8.592998 CGTTACCTTATTTGAACTGTAGATCAC 58.407 37.037 0.00 0.00 0.00 3.06
204 212 8.880750 GTTACCTTATTTGAACTGTAGATCACC 58.119 37.037 0.00 0.00 0.00 4.02
205 213 7.016153 ACCTTATTTGAACTGTAGATCACCA 57.984 36.000 0.00 0.00 0.00 4.17
206 214 7.458397 ACCTTATTTGAACTGTAGATCACCAA 58.542 34.615 0.00 0.00 0.00 3.67
207 215 8.109634 ACCTTATTTGAACTGTAGATCACCAAT 58.890 33.333 0.00 0.00 0.00 3.16
208 216 9.613428 CCTTATTTGAACTGTAGATCACCAATA 57.387 33.333 0.00 0.00 0.00 1.90
225 233 9.632638 ATCACCAATAAGAATACATGTAAAGCT 57.367 29.630 10.14 4.77 0.00 3.74
228 236 9.113838 ACCAATAAGAATACATGTAAAGCTCTG 57.886 33.333 10.14 2.90 0.00 3.35
237 245 9.982651 AATACATGTAAAGCTCTGATATAACGT 57.017 29.630 10.14 0.00 0.00 3.99
238 246 7.700322 ACATGTAAAGCTCTGATATAACGTG 57.300 36.000 0.00 0.00 0.00 4.49
239 247 6.201044 ACATGTAAAGCTCTGATATAACGTGC 59.799 38.462 0.00 0.00 0.00 5.34
240 248 5.656480 TGTAAAGCTCTGATATAACGTGCA 58.344 37.500 0.00 0.00 0.00 4.57
241 249 6.280643 TGTAAAGCTCTGATATAACGTGCAT 58.719 36.000 0.00 0.00 0.00 3.96
242 250 6.761242 TGTAAAGCTCTGATATAACGTGCATT 59.239 34.615 0.00 0.00 0.00 3.56
243 251 6.683974 AAAGCTCTGATATAACGTGCATTT 57.316 33.333 0.00 0.00 0.00 2.32
244 252 5.914085 AGCTCTGATATAACGTGCATTTC 57.086 39.130 0.00 0.00 0.00 2.17
245 253 4.445718 AGCTCTGATATAACGTGCATTTCG 59.554 41.667 0.00 0.00 0.00 3.46
246 254 4.209288 GCTCTGATATAACGTGCATTTCGT 59.791 41.667 0.00 0.00 43.45 3.85
247 255 5.635549 TCTGATATAACGTGCATTTCGTG 57.364 39.130 1.27 0.00 41.38 4.35
256 264 2.354729 CATTTCGTGCCTGGGGGA 59.645 61.111 0.00 0.00 33.58 4.81
257 265 1.304052 CATTTCGTGCCTGGGGGAA 60.304 57.895 0.00 0.00 33.58 3.97
258 266 0.684153 CATTTCGTGCCTGGGGGAAT 60.684 55.000 0.00 0.00 33.58 3.01
259 267 0.923358 ATTTCGTGCCTGGGGGAATA 59.077 50.000 0.00 0.00 33.58 1.75
260 268 0.923358 TTTCGTGCCTGGGGGAATAT 59.077 50.000 0.00 0.00 33.58 1.28
261 269 0.923358 TTCGTGCCTGGGGGAATATT 59.077 50.000 0.00 0.00 33.58 1.28
262 270 0.472471 TCGTGCCTGGGGGAATATTC 59.528 55.000 6.93 6.93 33.58 1.75
263 271 0.474184 CGTGCCTGGGGGAATATTCT 59.526 55.000 14.95 0.00 33.58 2.40
264 272 1.133792 CGTGCCTGGGGGAATATTCTT 60.134 52.381 14.95 0.00 33.58 2.52
265 273 2.105821 CGTGCCTGGGGGAATATTCTTA 59.894 50.000 14.95 0.00 33.58 2.10
266 274 3.244911 CGTGCCTGGGGGAATATTCTTAT 60.245 47.826 14.95 0.00 33.58 1.73
267 275 4.740902 GTGCCTGGGGGAATATTCTTATT 58.259 43.478 14.95 0.00 33.58 1.40
268 276 4.524328 GTGCCTGGGGGAATATTCTTATTG 59.476 45.833 14.95 3.96 33.58 1.90
269 277 3.511540 GCCTGGGGGAATATTCTTATTGC 59.488 47.826 14.95 7.76 35.91 3.56
270 278 3.758554 CCTGGGGGAATATTCTTATTGCG 59.241 47.826 14.95 0.00 37.10 4.85
271 279 4.398319 CTGGGGGAATATTCTTATTGCGT 58.602 43.478 14.95 0.00 37.10 5.24
272 280 4.141287 TGGGGGAATATTCTTATTGCGTG 58.859 43.478 14.95 0.00 37.10 5.34
273 281 4.142038 GGGGGAATATTCTTATTGCGTGT 58.858 43.478 14.95 0.00 37.10 4.49
274 282 5.163184 TGGGGGAATATTCTTATTGCGTGTA 60.163 40.000 14.95 0.00 37.10 2.90
275 283 5.180680 GGGGGAATATTCTTATTGCGTGTAC 59.819 44.000 14.95 0.00 37.10 2.90
276 284 5.107220 GGGGAATATTCTTATTGCGTGTACG 60.107 44.000 14.95 0.00 37.10 3.67
291 779 4.021822 CGTGTACGCATGCTAGAATTTTG 58.978 43.478 17.13 0.00 0.00 2.44
330 821 3.684103 TGGCAACTTAAACTTGTCACG 57.316 42.857 0.00 0.00 28.23 4.35
361 852 0.653636 GCATGGCGCAAAATGGATTG 59.346 50.000 10.83 0.00 41.79 2.67
368 859 3.002102 GCGCAAAATGGATTGAATGGTT 58.998 40.909 0.30 0.00 31.84 3.67
370 861 3.618150 CGCAAAATGGATTGAATGGTTCC 59.382 43.478 0.00 0.00 31.84 3.62
373 864 5.180271 CAAAATGGATTGAATGGTTCCTGG 58.820 41.667 0.00 0.00 31.84 4.45
423 914 7.225538 CACTTGGCGGATATAGAATTGATATCC 59.774 40.741 18.41 18.41 46.55 2.59
460 951 8.864260 GCGCCATGCAATTTTAAATATAAATC 57.136 30.769 0.00 0.00 45.45 2.17
481 972 4.494484 TCGATTATCGGCATCATCGAAAT 58.506 39.130 14.86 0.00 40.55 2.17
514 1005 9.726652 ACCAGATATATCATCAGACAATATCCT 57.273 33.333 15.08 0.00 35.26 3.24
539 1030 5.983333 ATAATTCTCACCCACATCTTCCT 57.017 39.130 0.00 0.00 0.00 3.36
566 1057 1.402984 CGTGTCACTAGGAGCTTCACC 60.403 57.143 0.00 0.00 0.00 4.02
581 1072 4.110482 GCTTCACCGATGTAAACGTAGAT 58.890 43.478 0.00 0.00 0.00 1.98
585 1076 4.082625 TCACCGATGTAAACGTAGATGTGT 60.083 41.667 0.00 0.00 0.00 3.72
590 1081 5.173312 CGATGTAAACGTAGATGTGTCATCC 59.827 44.000 6.18 0.00 0.00 3.51
601 1092 6.593268 AGATGTGTCATCCTGATCTAGATG 57.407 41.667 10.74 15.47 41.05 2.90
623 1114 2.046892 AGATGTCACGGCTGTGCC 60.047 61.111 21.33 10.74 46.01 5.01
670 1161 5.201243 AGAGCCCATTACCTTATTTGAACC 58.799 41.667 0.00 0.00 0.00 3.62
708 1199 2.838736 ACACGCAATAGATTAGCTGGG 58.161 47.619 0.00 0.00 0.00 4.45
716 1353 0.537188 AGATTAGCTGGGTCACACCG 59.463 55.000 0.00 0.00 39.83 4.94
721 1358 2.425592 CTGGGTCACACCGCTCAA 59.574 61.111 0.00 0.00 39.83 3.02
722 1359 1.227823 CTGGGTCACACCGCTCAAA 60.228 57.895 0.00 0.00 39.83 2.69
775 1661 5.063880 ACTACAAGTGTGACCTTCCAATTC 58.936 41.667 0.00 0.00 0.00 2.17
796 1682 3.625232 AGTGTACAACTGCACGCG 58.375 55.556 3.53 3.53 37.88 6.01
797 1683 1.954146 AGTGTACAACTGCACGCGG 60.954 57.895 12.47 0.00 37.88 6.46
798 1684 3.342627 TGTACAACTGCACGCGGC 61.343 61.111 12.47 12.14 45.13 6.53
816 1702 3.326578 ATGCGGGGTAGTGCCACA 61.327 61.111 0.00 0.00 42.11 4.17
820 1706 1.671054 CGGGGTAGTGCCACACTTG 60.671 63.158 5.44 0.00 42.59 3.16
821 1707 1.303317 GGGGTAGTGCCACACTTGG 60.303 63.158 5.44 0.00 42.59 3.61
829 1715 4.709840 CCACACTTGGCCTGAGAG 57.290 61.111 3.32 3.35 35.56 3.20
854 1740 1.191489 TCTGAGCCGTTGGTCCATGA 61.191 55.000 0.00 0.00 38.24 3.07
885 1771 0.884704 AAAACTGCGTGCGGTCAGAT 60.885 50.000 6.80 0.00 33.90 2.90
892 1778 0.376152 CGTGCGGTCAGATAGTACGT 59.624 55.000 9.45 0.00 38.73 3.57
893 1779 1.594397 CGTGCGGTCAGATAGTACGTA 59.406 52.381 9.45 0.00 38.73 3.57
894 1780 2.598439 CGTGCGGTCAGATAGTACGTAC 60.598 54.545 18.10 18.10 38.73 3.67
895 1781 1.594397 TGCGGTCAGATAGTACGTACG 59.406 52.381 19.49 15.01 0.00 3.67
972 1865 0.167033 CTCGATCGATAGCGTCTGGG 59.833 60.000 19.78 0.00 38.98 4.45
1189 2097 1.148759 GCTCGATTCTCTGCCCGTTC 61.149 60.000 0.00 0.00 0.00 3.95
1198 2106 2.998480 TGCCCGTTCCTTCGCCTA 60.998 61.111 0.00 0.00 0.00 3.93
1205 2113 3.512680 CCGTTCCTTCGCCTATATCATC 58.487 50.000 0.00 0.00 0.00 2.92
1206 2114 3.172050 CGTTCCTTCGCCTATATCATCG 58.828 50.000 0.00 0.00 0.00 3.84
1208 2116 4.167268 GTTCCTTCGCCTATATCATCGAC 58.833 47.826 0.00 0.00 0.00 4.20
1222 2130 0.941463 ATCGACCGAATGATCAGCGC 60.941 55.000 13.53 0.00 0.00 5.92
1258 2166 1.534729 ACCTGTTTCGATTTGGGCTC 58.465 50.000 0.00 0.00 0.00 4.70
1260 2168 0.179189 CTGTTTCGATTTGGGCTCGC 60.179 55.000 0.00 0.00 36.11 5.03
1261 2169 1.226018 GTTTCGATTTGGGCTCGCG 60.226 57.895 0.00 0.00 36.11 5.87
1279 2223 0.978146 CGGGGAGACAGAGGGTTGAT 60.978 60.000 0.00 0.00 0.00 2.57
1280 2224 1.688311 CGGGGAGACAGAGGGTTGATA 60.688 57.143 0.00 0.00 0.00 2.15
1284 2228 2.099427 GGAGACAGAGGGTTGATACGTC 59.901 54.545 0.00 0.00 0.00 4.34
1285 2229 3.018149 GAGACAGAGGGTTGATACGTCT 58.982 50.000 0.00 0.00 35.07 4.18
1286 2230 3.432378 AGACAGAGGGTTGATACGTCTT 58.568 45.455 0.00 0.00 31.32 3.01
1288 2232 2.163815 ACAGAGGGTTGATACGTCTTCG 59.836 50.000 0.00 0.00 43.34 3.79
1289 2233 1.134560 AGAGGGTTGATACGTCTTCGC 59.865 52.381 0.00 0.00 41.18 4.70
1290 2234 0.892755 AGGGTTGATACGTCTTCGCA 59.107 50.000 0.00 0.00 41.18 5.10
1302 2291 2.271800 GTCTTCGCAGGTGGTTCATAG 58.728 52.381 0.00 0.00 0.00 2.23
1303 2292 1.899814 TCTTCGCAGGTGGTTCATAGT 59.100 47.619 0.00 0.00 0.00 2.12
1304 2293 2.301870 TCTTCGCAGGTGGTTCATAGTT 59.698 45.455 0.00 0.00 0.00 2.24
1305 2294 2.851263 TCGCAGGTGGTTCATAGTTT 57.149 45.000 0.00 0.00 0.00 2.66
1306 2295 3.134574 TCGCAGGTGGTTCATAGTTTT 57.865 42.857 0.00 0.00 0.00 2.43
1308 2297 3.074412 CGCAGGTGGTTCATAGTTTTCT 58.926 45.455 0.00 0.00 0.00 2.52
1309 2298 3.502211 CGCAGGTGGTTCATAGTTTTCTT 59.498 43.478 0.00 0.00 0.00 2.52
1310 2299 4.378459 CGCAGGTGGTTCATAGTTTTCTTC 60.378 45.833 0.00 0.00 0.00 2.87
1311 2300 4.378459 GCAGGTGGTTCATAGTTTTCTTCG 60.378 45.833 0.00 0.00 0.00 3.79
1312 2301 4.994852 CAGGTGGTTCATAGTTTTCTTCGA 59.005 41.667 0.00 0.00 0.00 3.71
1313 2302 5.468746 CAGGTGGTTCATAGTTTTCTTCGAA 59.531 40.000 0.00 0.00 0.00 3.71
1314 2303 6.017440 CAGGTGGTTCATAGTTTTCTTCGAAA 60.017 38.462 0.00 0.00 0.00 3.46
1315 2304 6.715264 AGGTGGTTCATAGTTTTCTTCGAAAT 59.285 34.615 0.00 0.00 0.00 2.17
1316 2305 7.021790 GGTGGTTCATAGTTTTCTTCGAAATC 58.978 38.462 0.00 0.00 0.00 2.17
1317 2306 6.736853 GTGGTTCATAGTTTTCTTCGAAATCG 59.263 38.462 0.00 0.00 41.45 3.34
1318 2307 6.128391 TGGTTCATAGTTTTCTTCGAAATCGG 60.128 38.462 0.00 0.00 40.29 4.18
1319 2308 5.464965 TCATAGTTTTCTTCGAAATCGGC 57.535 39.130 0.00 0.00 40.29 5.54
1320 2309 5.175859 TCATAGTTTTCTTCGAAATCGGCT 58.824 37.500 0.00 0.00 40.29 5.52
1321 2310 3.813529 AGTTTTCTTCGAAATCGGCTG 57.186 42.857 0.00 0.00 40.29 4.85
1322 2311 2.484264 AGTTTTCTTCGAAATCGGCTGG 59.516 45.455 0.00 0.00 40.29 4.85
1323 2312 2.465860 TTTCTTCGAAATCGGCTGGA 57.534 45.000 0.00 0.00 40.29 3.86
1324 2313 2.465860 TTCTTCGAAATCGGCTGGAA 57.534 45.000 0.00 0.00 40.29 3.53
1325 2314 2.010145 TCTTCGAAATCGGCTGGAAG 57.990 50.000 0.00 0.00 40.29 3.46
1326 2315 1.548719 TCTTCGAAATCGGCTGGAAGA 59.451 47.619 0.00 6.99 40.38 2.87
1327 2316 2.028476 TCTTCGAAATCGGCTGGAAGAA 60.028 45.455 8.27 0.86 39.89 2.52
1328 2317 2.691409 TCGAAATCGGCTGGAAGAAT 57.309 45.000 2.63 0.00 40.29 2.40
1329 2318 3.812156 TCGAAATCGGCTGGAAGAATA 57.188 42.857 2.63 0.00 40.29 1.75
1330 2319 4.131649 TCGAAATCGGCTGGAAGAATAA 57.868 40.909 2.63 0.00 40.29 1.40
1331 2320 4.119862 TCGAAATCGGCTGGAAGAATAAG 58.880 43.478 2.63 0.00 40.29 1.73
1332 2321 4.119862 CGAAATCGGCTGGAAGAATAAGA 58.880 43.478 0.00 0.00 33.75 2.10
1333 2322 4.570772 CGAAATCGGCTGGAAGAATAAGAA 59.429 41.667 0.00 0.00 33.75 2.52
1334 2323 5.277058 CGAAATCGGCTGGAAGAATAAGAAG 60.277 44.000 0.00 0.00 33.75 2.85
1335 2324 4.762289 ATCGGCTGGAAGAATAAGAAGT 57.238 40.909 0.00 0.00 34.07 3.01
1336 2325 5.871396 ATCGGCTGGAAGAATAAGAAGTA 57.129 39.130 0.00 0.00 34.07 2.24
1337 2326 5.670792 TCGGCTGGAAGAATAAGAAGTAA 57.329 39.130 0.00 0.00 34.07 2.24
1338 2327 6.045072 TCGGCTGGAAGAATAAGAAGTAAA 57.955 37.500 0.00 0.00 34.07 2.01
1339 2328 6.469410 TCGGCTGGAAGAATAAGAAGTAAAA 58.531 36.000 0.00 0.00 34.07 1.52
1340 2329 6.938030 TCGGCTGGAAGAATAAGAAGTAAAAA 59.062 34.615 0.00 0.00 34.07 1.94
1341 2330 7.021790 CGGCTGGAAGAATAAGAAGTAAAAAC 58.978 38.462 0.00 0.00 34.07 2.43
1342 2331 7.313646 GGCTGGAAGAATAAGAAGTAAAAACC 58.686 38.462 0.00 0.00 34.07 3.27
1343 2332 7.039993 GGCTGGAAGAATAAGAAGTAAAAACCA 60.040 37.037 0.00 0.00 34.07 3.67
1344 2333 8.523658 GCTGGAAGAATAAGAAGTAAAAACCAT 58.476 33.333 0.00 0.00 34.07 3.55
1355 2344 7.712797 AGAAGTAAAAACCATTAACACTGTGG 58.287 34.615 13.09 0.00 38.96 4.17
1356 2345 7.558444 AGAAGTAAAAACCATTAACACTGTGGA 59.442 33.333 13.09 0.00 36.82 4.02
1357 2346 7.034685 AGTAAAAACCATTAACACTGTGGAC 57.965 36.000 13.09 0.00 36.82 4.02
1358 2347 6.831868 AGTAAAAACCATTAACACTGTGGACT 59.168 34.615 13.09 0.00 36.82 3.85
1359 2348 6.538945 AAAAACCATTAACACTGTGGACTT 57.461 33.333 13.09 0.03 36.82 3.01
1360 2349 6.538945 AAAACCATTAACACTGTGGACTTT 57.461 33.333 13.09 0.00 36.82 2.66
1361 2350 6.538945 AAACCATTAACACTGTGGACTTTT 57.461 33.333 13.09 0.00 36.82 2.27
1362 2351 7.648039 AAACCATTAACACTGTGGACTTTTA 57.352 32.000 13.09 0.00 36.82 1.52
1363 2352 7.648039 AACCATTAACACTGTGGACTTTTAA 57.352 32.000 13.09 7.72 36.82 1.52
1364 2353 7.272037 ACCATTAACACTGTGGACTTTTAAG 57.728 36.000 13.09 0.49 36.82 1.85
1365 2354 6.831868 ACCATTAACACTGTGGACTTTTAAGT 59.168 34.615 13.09 0.00 43.16 2.24
1366 2355 7.340999 ACCATTAACACTGTGGACTTTTAAGTT 59.659 33.333 13.09 0.00 39.88 2.66
1367 2356 7.647715 CCATTAACACTGTGGACTTTTAAGTTG 59.352 37.037 13.09 4.24 39.88 3.16
1368 2357 5.576447 AACACTGTGGACTTTTAAGTTGG 57.424 39.130 13.09 0.00 39.88 3.77
1369 2358 4.850680 ACACTGTGGACTTTTAAGTTGGA 58.149 39.130 13.09 0.00 39.88 3.53
1370 2359 4.638865 ACACTGTGGACTTTTAAGTTGGAC 59.361 41.667 13.09 0.00 39.88 4.02
1371 2360 3.875134 ACTGTGGACTTTTAAGTTGGACG 59.125 43.478 0.00 0.00 39.88 4.79
1372 2361 4.124238 CTGTGGACTTTTAAGTTGGACGA 58.876 43.478 0.00 0.00 39.88 4.20
1373 2362 4.515361 TGTGGACTTTTAAGTTGGACGAA 58.485 39.130 0.00 0.00 39.88 3.85
1374 2363 4.333372 TGTGGACTTTTAAGTTGGACGAAC 59.667 41.667 0.00 0.00 39.88 3.95
1385 2374 1.814169 GGACGAACAGGCCGAATCC 60.814 63.158 0.00 0.00 38.99 3.01
1404 2394 1.274798 CGGGCGTGATTTTTGTGTGC 61.275 55.000 0.00 0.00 0.00 4.57
1413 2403 4.629200 GTGATTTTTGTGTGCTGTTGGAAA 59.371 37.500 0.00 0.00 0.00 3.13
1430 2420 6.446318 GTTGGAAACTGAGAATAATGTTGCA 58.554 36.000 0.00 0.00 45.32 4.08
1435 2425 7.977853 GGAAACTGAGAATAATGTTGCATCAAT 59.022 33.333 0.75 0.00 0.00 2.57
1437 2427 8.697846 AACTGAGAATAATGTTGCATCAATTG 57.302 30.769 0.75 0.00 0.00 2.32
1455 2445 3.913548 TTGTGCACATTATGGTGTCAC 57.086 42.857 22.39 0.00 41.67 3.67
1461 2451 2.421073 CACATTATGGTGTCACTGCTGG 59.579 50.000 2.35 0.00 34.09 4.85
1464 2454 3.500448 TTATGGTGTCACTGCTGGAAA 57.500 42.857 2.35 0.00 0.00 3.13
1466 2456 3.719268 ATGGTGTCACTGCTGGAAATA 57.281 42.857 2.35 0.00 0.00 1.40
1473 2463 6.049149 GTGTCACTGCTGGAAATATTAGCTA 58.951 40.000 9.51 0.00 38.25 3.32
1474 2464 6.201806 GTGTCACTGCTGGAAATATTAGCTAG 59.798 42.308 9.51 7.87 38.25 3.42
1477 2467 4.907875 ACTGCTGGAAATATTAGCTAGGGA 59.092 41.667 9.51 0.00 38.25 4.20
1478 2468 5.549619 ACTGCTGGAAATATTAGCTAGGGAT 59.450 40.000 9.51 0.00 38.25 3.85
1479 2469 6.044871 ACTGCTGGAAATATTAGCTAGGGATT 59.955 38.462 9.51 0.00 38.25 3.01
1480 2470 7.237679 ACTGCTGGAAATATTAGCTAGGGATTA 59.762 37.037 9.51 0.00 38.25 1.75
1481 2471 8.162848 TGCTGGAAATATTAGCTAGGGATTAT 57.837 34.615 9.51 0.00 38.25 1.28
1484 2474 9.606631 CTGGAAATATTAGCTAGGGATTATGTC 57.393 37.037 0.00 0.00 0.00 3.06
1485 2475 9.111519 TGGAAATATTAGCTAGGGATTATGTCA 57.888 33.333 0.00 0.00 0.00 3.58
1486 2476 9.959721 GGAAATATTAGCTAGGGATTATGTCAA 57.040 33.333 0.00 0.00 0.00 3.18
1492 2482 9.732130 ATTAGCTAGGGATTATGTCAAAGAATC 57.268 33.333 0.00 0.00 0.00 2.52
1493 2483 6.226787 AGCTAGGGATTATGTCAAAGAATCG 58.773 40.000 0.00 0.00 31.57 3.34
1494 2484 6.042093 AGCTAGGGATTATGTCAAAGAATCGA 59.958 38.462 0.00 0.00 31.57 3.59
1496 2486 7.148507 GCTAGGGATTATGTCAAAGAATCGATG 60.149 40.741 0.00 0.00 31.57 3.84
1498 2488 7.056635 AGGGATTATGTCAAAGAATCGATGTT 58.943 34.615 0.00 0.00 31.57 2.71
1500 2490 7.645340 GGGATTATGTCAAAGAATCGATGTTTG 59.355 37.037 20.19 20.19 31.57 2.93
1501 2491 8.184192 GGATTATGTCAAAGAATCGATGTTTGT 58.816 33.333 23.09 13.04 33.69 2.83
1502 2492 9.559958 GATTATGTCAAAGAATCGATGTTTGTT 57.440 29.630 23.09 15.65 33.69 2.83
1504 2494 7.858052 ATGTCAAAGAATCGATGTTTGTTTC 57.142 32.000 23.09 17.40 33.69 2.78
1505 2495 6.790282 TGTCAAAGAATCGATGTTTGTTTCA 58.210 32.000 23.09 18.85 33.69 2.69
1540 2811 9.830975 AGTATTTAAAAACAATTGAGCCAAAGT 57.169 25.926 13.59 0.87 0.00 2.66
1541 2812 9.862585 GTATTTAAAAACAATTGAGCCAAAGTG 57.137 29.630 13.59 0.00 0.00 3.16
1542 2813 7.913674 TTTAAAAACAATTGAGCCAAAGTGT 57.086 28.000 13.59 0.00 30.52 3.55
1543 2814 9.606631 ATTTAAAAACAATTGAGCCAAAGTGTA 57.393 25.926 13.59 0.00 29.63 2.90
1575 2846 7.283354 TGAACAGATACTCGAGTCATGACTTAT 59.717 37.037 28.46 20.84 42.66 1.73
1625 2896 9.502145 TGAGCGTTGATTTTGAATATTTGATAC 57.498 29.630 0.00 0.00 0.00 2.24
1660 3013 6.096282 GGATGCCTTACTGCCATTTACTTTTA 59.904 38.462 0.00 0.00 0.00 1.52
1662 3015 6.683715 TGCCTTACTGCCATTTACTTTTAAC 58.316 36.000 0.00 0.00 0.00 2.01
1663 3016 6.492087 TGCCTTACTGCCATTTACTTTTAACT 59.508 34.615 0.00 0.00 0.00 2.24
1664 3017 6.806739 GCCTTACTGCCATTTACTTTTAACTG 59.193 38.462 0.00 0.00 0.00 3.16
1669 3022 7.645402 ACTGCCATTTACTTTTAACTGTGTAC 58.355 34.615 0.00 0.00 0.00 2.90
1671 3024 7.644490 TGCCATTTACTTTTAACTGTGTACTG 58.356 34.615 0.00 0.00 0.00 2.74
1680 3033 1.308998 ACTGTGTACTGCCAGTTTGC 58.691 50.000 1.02 0.00 38.76 3.68
1684 3037 2.692557 TGTGTACTGCCAGTTTGCAAAT 59.307 40.909 16.21 0.00 41.51 2.32
1710 3063 0.038343 ATTTGTGCCATTGTGCCGTC 60.038 50.000 0.00 0.00 0.00 4.79
1718 3071 2.151202 CCATTGTGCCGTCCCATATAC 58.849 52.381 0.00 0.00 0.00 1.47
1722 3075 1.844289 TGCCGTCCCATATACCCCC 60.844 63.158 0.00 0.00 0.00 5.40
1743 3096 5.397360 CCCCTTATTAATGCTCCTTTCCAT 58.603 41.667 0.00 0.00 0.00 3.41
1791 3144 5.119694 GGACCAACTACTTCATCTTGATCC 58.880 45.833 0.00 0.00 0.00 3.36
1822 3175 2.045926 GCAATGGGACCTCTGCGT 60.046 61.111 0.00 0.00 0.00 5.24
1825 3178 0.249120 CAATGGGACCTCTGCGTGTA 59.751 55.000 0.00 0.00 0.00 2.90
1855 3208 7.532884 GTGTTTTTGGCTTCTATAAGTTACACG 59.467 37.037 0.00 0.00 34.99 4.49
1932 3287 3.217626 CTTCCTTCAGAAACCAGTTGCT 58.782 45.455 0.00 0.00 32.88 3.91
1995 3350 4.839121 TCAGTGACAGGTGTGTTTAAACT 58.161 39.130 18.72 0.00 36.88 2.66
2068 3423 0.321653 AATGAGCACGGGGTTCTGTC 60.322 55.000 0.00 0.00 0.00 3.51
2116 3471 9.384849 TCTCTTATATTCCAGATGAAGGATTGA 57.615 33.333 0.00 0.00 36.14 2.57
2139 3494 5.488341 ACACGAGTACCTGAGCAATTTATT 58.512 37.500 0.00 0.00 0.00 1.40
2185 3540 6.090088 CGTATCACCATAGCAAGCTTTATCTC 59.910 42.308 0.00 0.00 0.00 2.75
2192 3547 8.093927 ACCATAGCAAGCTTTATCTCTTCTATC 58.906 37.037 0.00 0.00 0.00 2.08
2198 3553 6.850752 AGCTTTATCTCTTCTATCTAGCCC 57.149 41.667 0.00 0.00 0.00 5.19
2199 3554 5.719563 AGCTTTATCTCTTCTATCTAGCCCC 59.280 44.000 0.00 0.00 0.00 5.80
2216 3571 2.179018 CGCGGCTCCCAATTGTTG 59.821 61.111 4.43 0.00 0.00 3.33
2286 3641 2.571653 TGGGGAAACAGTGATACCTCAG 59.428 50.000 0.00 0.00 30.18 3.35
2308 3663 6.667848 TCAGACTTCTACCAGGATGATTGTTA 59.332 38.462 0.00 0.00 39.69 2.41
2309 3664 6.758886 CAGACTTCTACCAGGATGATTGTTAC 59.241 42.308 0.00 0.00 39.69 2.50
2310 3665 5.990668 ACTTCTACCAGGATGATTGTTACC 58.009 41.667 0.00 0.00 39.69 2.85
2311 3666 4.665833 TCTACCAGGATGATTGTTACCG 57.334 45.455 0.00 0.00 39.69 4.02
2312 3667 4.283337 TCTACCAGGATGATTGTTACCGA 58.717 43.478 0.00 0.00 39.69 4.69
2313 3668 4.899457 TCTACCAGGATGATTGTTACCGAT 59.101 41.667 0.00 0.00 39.69 4.18
2314 3669 4.503714 ACCAGGATGATTGTTACCGATT 57.496 40.909 0.00 0.00 39.69 3.34
2315 3670 5.623956 ACCAGGATGATTGTTACCGATTA 57.376 39.130 0.00 0.00 39.69 1.75
2316 3671 5.611374 ACCAGGATGATTGTTACCGATTAG 58.389 41.667 0.00 0.00 39.69 1.73
2317 3672 4.997395 CCAGGATGATTGTTACCGATTAGG 59.003 45.833 0.00 0.00 43.24 2.69
2333 3688 7.553881 CCGATTAGGTACTTTTGATGATTGT 57.446 36.000 0.00 0.00 41.75 2.71
2334 3689 7.985476 CCGATTAGGTACTTTTGATGATTGTT 58.015 34.615 0.00 0.00 41.75 2.83
2388 3743 3.380004 CAGTTTTGCTGTTACTTCCACCA 59.620 43.478 0.00 0.00 40.27 4.17
2436 3791 2.879813 TTCACCGGATTTAGCGGCCC 62.880 60.000 9.46 0.00 0.00 5.80
2447 3802 2.871795 TAGCGGCCCAGATGAGACCA 62.872 60.000 0.00 0.00 0.00 4.02
2508 3865 4.267349 TCCTTTACTCGGTTTCTTGGAG 57.733 45.455 0.00 0.00 0.00 3.86
2509 3866 3.899360 TCCTTTACTCGGTTTCTTGGAGA 59.101 43.478 0.00 0.00 0.00 3.71
2520 3877 5.560953 CGGTTTCTTGGAGAGCTTTGTTTAG 60.561 44.000 0.00 0.00 0.00 1.85
2659 4025 5.126067 AGGTTGGTAGAACACATATGATGC 58.874 41.667 10.38 0.00 0.00 3.91
2673 4039 8.632679 ACACATATGATGCCATTTTTACCTTAG 58.367 33.333 10.38 0.00 34.31 2.18
2681 4049 6.349300 TGCCATTTTTACCTTAGTTTTTGCA 58.651 32.000 0.00 0.00 0.00 4.08
2782 4150 2.241281 TTCCTGATAGTTCCGTGGGA 57.759 50.000 0.00 0.00 0.00 4.37
2826 4194 6.424207 CGGTAAGGCCATCTAATTAGAGTTTC 59.576 42.308 19.51 9.99 35.50 2.78
2831 4199 7.810260 AGGCCATCTAATTAGAGTTTCAGAAT 58.190 34.615 19.51 0.00 35.50 2.40
2924 4292 4.495422 TCAGAGAACGTAATCTGAAAGGC 58.505 43.478 23.22 0.00 46.74 4.35
3016 4391 1.117150 GGTTCGTACCATGGGAGCTA 58.883 55.000 18.09 0.00 44.36 3.32
3018 4393 1.117150 TTCGTACCATGGGAGCTACC 58.883 55.000 18.09 8.55 38.08 3.18
3062 4437 8.446273 CCTGTATAGTTGAAAGTTGAATCTGTG 58.554 37.037 0.00 0.00 0.00 3.66
3158 4533 3.235200 CACCCCCTGTTATGTTTTTCCA 58.765 45.455 0.00 0.00 0.00 3.53
3160 4535 4.081697 CACCCCCTGTTATGTTTTTCCATC 60.082 45.833 0.00 0.00 0.00 3.51
3229 4770 1.189524 TAGTACCGTGCCAAGCCACT 61.190 55.000 0.00 0.00 33.60 4.00
3276 4817 6.933521 CCTTCGATGTATCCTCATCATTTCTT 59.066 38.462 7.32 0.00 42.82 2.52
3379 4943 7.740733 AACACTCTAGTGGTGCATCCAAATTC 61.741 42.308 14.30 0.00 45.59 2.17
3502 5066 4.143543 TCCAACATGAGCATTGAACAAGA 58.856 39.130 0.00 0.00 0.00 3.02
3503 5067 4.022935 TCCAACATGAGCATTGAACAAGAC 60.023 41.667 0.00 0.00 0.00 3.01
3567 5133 3.258872 ACACAACCAGGCGTATACTACAA 59.741 43.478 0.56 0.00 0.00 2.41
3569 5135 3.258872 ACAACCAGGCGTATACTACAACA 59.741 43.478 0.56 0.00 0.00 3.33
3571 5137 3.853475 ACCAGGCGTATACTACAACAAC 58.147 45.455 0.56 0.00 0.00 3.32
3573 5139 3.118884 CCAGGCGTATACTACAACAACCT 60.119 47.826 0.56 0.00 0.00 3.50
3601 5269 9.118300 TGCTTAGACTACTAGTATGAGTTAACC 57.882 37.037 2.33 0.00 27.44 2.85
3623 5291 7.907214 ACCAGAACTAGTTTCATGTTATGAC 57.093 36.000 10.02 0.00 39.39 3.06
3624 5292 7.450074 ACCAGAACTAGTTTCATGTTATGACA 58.550 34.615 10.02 0.00 39.39 3.58
3705 5373 1.604378 CTCGGAGGCCCAGACAAAT 59.396 57.895 0.00 0.00 0.00 2.32
3718 5386 5.410067 CCCAGACAAATAAATGCGATGTTT 58.590 37.500 0.00 0.00 0.00 2.83
3721 5389 6.585702 CCAGACAAATAAATGCGATGTTTGAA 59.414 34.615 10.75 0.00 34.71 2.69
3786 5454 5.047021 TCAGGAATAGACCAGTCAAACAGAG 60.047 44.000 0.00 0.00 0.00 3.35
3830 5498 2.941720 CTCATTAGCACTCTTGGGAAGC 59.058 50.000 0.00 0.00 0.00 3.86
3845 5513 0.952984 GAAGCACACTCTGACCCTGC 60.953 60.000 0.00 0.00 0.00 4.85
3884 5552 1.716172 GATCTGCGCCGGAGTTTTC 59.284 57.895 5.05 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.499162 GTGAATTAATCAGGATATTGTCGAAGG 58.501 37.037 0.00 0.00 39.19 3.46
1 2 9.045223 TGTGAATTAATCAGGATATTGTCGAAG 57.955 33.333 0.00 0.00 39.19 3.79
2 3 8.826710 GTGTGAATTAATCAGGATATTGTCGAA 58.173 33.333 0.00 0.00 39.19 3.71
3 4 7.441157 GGTGTGAATTAATCAGGATATTGTCGA 59.559 37.037 0.00 0.00 39.19 4.20
4 5 7.307989 GGGTGTGAATTAATCAGGATATTGTCG 60.308 40.741 0.00 0.00 39.19 4.35
9 10 6.910191 TGTGGGTGTGAATTAATCAGGATAT 58.090 36.000 0.00 0.00 39.19 1.63
25 26 1.710244 TGGAATGGAAGATGTGGGTGT 59.290 47.619 0.00 0.00 0.00 4.16
41 42 4.308458 CCCCGTGACACGCTGGAA 62.308 66.667 22.46 0.00 40.91 3.53
46 47 4.681978 AAGCTCCCCGTGACACGC 62.682 66.667 22.46 8.34 40.91 5.34
104 105 1.607148 TCACATATCTAGCGGTGGTCG 59.393 52.381 0.00 0.00 42.76 4.79
132 140 3.474570 GGCGGATCCACTGAGCCT 61.475 66.667 17.66 0.00 45.19 4.58
167 175 3.538634 ATAAGGTAACGGGCTCTCAAC 57.461 47.619 0.00 0.00 46.39 3.18
189 197 9.817809 GTATTCTTATTGGTGATCTACAGTTCA 57.182 33.333 0.00 0.00 0.00 3.18
190 198 9.817809 TGTATTCTTATTGGTGATCTACAGTTC 57.182 33.333 0.00 0.00 0.00 3.01
192 200 9.770097 CATGTATTCTTATTGGTGATCTACAGT 57.230 33.333 0.00 0.00 0.00 3.55
193 201 9.770097 ACATGTATTCTTATTGGTGATCTACAG 57.230 33.333 0.00 0.00 0.00 2.74
198 206 9.884465 GCTTTACATGTATTCTTATTGGTGATC 57.116 33.333 6.36 0.00 0.00 2.92
199 207 9.632638 AGCTTTACATGTATTCTTATTGGTGAT 57.367 29.630 6.36 0.00 0.00 3.06
200 208 9.109393 GAGCTTTACATGTATTCTTATTGGTGA 57.891 33.333 6.36 0.00 0.00 4.02
201 209 9.113838 AGAGCTTTACATGTATTCTTATTGGTG 57.886 33.333 6.36 0.00 0.00 4.17
202 210 9.113838 CAGAGCTTTACATGTATTCTTATTGGT 57.886 33.333 6.36 0.00 0.00 3.67
203 211 9.330063 TCAGAGCTTTACATGTATTCTTATTGG 57.670 33.333 6.36 0.00 0.00 3.16
225 233 5.635549 CACGAAATGCACGTTATATCAGA 57.364 39.130 0.00 0.00 42.07 3.27
239 247 0.684153 ATTCCCCCAGGCACGAAATG 60.684 55.000 0.00 0.00 0.00 2.32
240 248 0.923358 TATTCCCCCAGGCACGAAAT 59.077 50.000 0.00 0.00 0.00 2.17
241 249 0.923358 ATATTCCCCCAGGCACGAAA 59.077 50.000 0.00 0.00 0.00 3.46
242 250 0.923358 AATATTCCCCCAGGCACGAA 59.077 50.000 0.00 0.00 0.00 3.85
243 251 0.472471 GAATATTCCCCCAGGCACGA 59.528 55.000 3.92 0.00 0.00 4.35
244 252 0.474184 AGAATATTCCCCCAGGCACG 59.526 55.000 11.92 0.00 0.00 5.34
245 253 2.755952 AAGAATATTCCCCCAGGCAC 57.244 50.000 11.92 0.00 0.00 5.01
246 254 4.739793 CAATAAGAATATTCCCCCAGGCA 58.260 43.478 11.92 0.00 29.08 4.75
247 255 3.511540 GCAATAAGAATATTCCCCCAGGC 59.488 47.826 11.92 5.95 29.08 4.85
248 256 3.758554 CGCAATAAGAATATTCCCCCAGG 59.241 47.826 11.92 0.00 29.08 4.45
249 257 4.216257 CACGCAATAAGAATATTCCCCCAG 59.784 45.833 11.92 1.68 29.08 4.45
250 258 4.141287 CACGCAATAAGAATATTCCCCCA 58.859 43.478 11.92 0.00 29.08 4.96
251 259 4.142038 ACACGCAATAAGAATATTCCCCC 58.858 43.478 11.92 0.00 29.08 5.40
252 260 5.107220 CGTACACGCAATAAGAATATTCCCC 60.107 44.000 11.92 0.00 29.08 4.81
253 261 5.912528 CGTACACGCAATAAGAATATTCCC 58.087 41.667 11.92 0.00 29.08 3.97
269 277 3.925688 AAATTCTAGCATGCGTACACG 57.074 42.857 13.01 0.00 43.27 4.49
270 278 3.786048 GCAAAATTCTAGCATGCGTACAC 59.214 43.478 13.01 0.00 0.00 2.90
271 279 4.014847 GCAAAATTCTAGCATGCGTACA 57.985 40.909 13.01 0.00 0.00 2.90
276 284 3.310774 TCTCTCGCAAAATTCTAGCATGC 59.689 43.478 10.51 10.51 0.00 4.06
277 285 5.475273 TTCTCTCGCAAAATTCTAGCATG 57.525 39.130 0.00 0.00 0.00 4.06
278 286 6.150140 AGTTTTCTCTCGCAAAATTCTAGCAT 59.850 34.615 0.00 0.00 0.00 3.79
279 287 5.470098 AGTTTTCTCTCGCAAAATTCTAGCA 59.530 36.000 0.00 0.00 0.00 3.49
280 288 5.932661 AGTTTTCTCTCGCAAAATTCTAGC 58.067 37.500 0.00 0.00 0.00 3.42
281 289 9.878599 TTTTAGTTTTCTCTCGCAAAATTCTAG 57.121 29.630 0.00 0.00 0.00 2.43
282 290 9.659830 GTTTTAGTTTTCTCTCGCAAAATTCTA 57.340 29.630 0.00 0.00 0.00 2.10
291 779 4.159120 GCCATGTTTTAGTTTTCTCTCGC 58.841 43.478 0.00 0.00 0.00 5.03
349 840 4.632688 CAGGAACCATTCAATCCATTTTGC 59.367 41.667 0.00 0.00 35.62 3.68
361 852 3.085952 TGGATCAACCAGGAACCATTC 57.914 47.619 0.00 0.00 44.64 2.67
373 864 9.023967 GTGTTTGAATTATTATGCTGGATCAAC 57.976 33.333 0.00 0.00 0.00 3.18
423 914 0.030235 CATGGCGCCACATCTGATTG 59.970 55.000 35.50 20.14 0.00 2.67
424 915 1.731433 GCATGGCGCCACATCTGATT 61.731 55.000 35.50 10.89 32.94 2.57
425 916 2.191513 GCATGGCGCCACATCTGAT 61.192 57.895 35.50 11.83 32.94 2.90
426 917 2.825387 GCATGGCGCCACATCTGA 60.825 61.111 35.50 7.17 32.94 3.27
427 918 2.011741 ATTGCATGGCGCCACATCTG 62.012 55.000 35.50 27.06 41.33 2.90
428 919 1.324740 AATTGCATGGCGCCACATCT 61.325 50.000 35.50 14.18 41.33 2.90
454 945 6.273071 TCGATGATGCCGATAATCGATTTAT 58.727 36.000 17.19 7.78 44.08 1.40
460 951 4.847365 ATTTCGATGATGCCGATAATCG 57.153 40.909 0.00 0.00 42.42 3.34
469 960 5.863397 TCTGGTTTCAAAATTTCGATGATGC 59.137 36.000 0.00 0.00 0.00 3.91
481 972 9.904198 TGTCTGATGATATATCTGGTTTCAAAA 57.096 29.630 13.79 0.00 0.00 2.44
514 1005 6.069440 AGGAAGATGTGGGTGAGAATTATTCA 60.069 38.462 7.74 0.00 0.00 2.57
539 1030 2.426024 GCTCCTAGTGACACGTTGGATA 59.574 50.000 14.44 0.00 0.00 2.59
566 1057 5.173312 GGATGACACATCTACGTTTACATCG 59.827 44.000 10.78 0.00 34.43 3.84
590 1081 6.207928 GTGACATCTCACACATCTAGATCAG 58.792 44.000 1.03 0.70 45.57 2.90
601 1092 0.319900 ACAGCCGTGACATCTCACAC 60.320 55.000 1.92 0.00 46.47 3.82
619 1110 9.455847 GATGATATTTGTTTCTATTTCTGGCAC 57.544 33.333 0.00 0.00 0.00 5.01
635 1126 5.352569 GGTAATGGGCTCTCGATGATATTTG 59.647 44.000 0.00 0.00 0.00 2.32
670 1161 3.724716 CGTGTTTGCATTGGTGATCTACG 60.725 47.826 0.00 0.00 0.00 3.51
730 1367 0.898320 ATCCTGAACTCGTGACCCAG 59.102 55.000 0.00 0.00 0.00 4.45
797 1683 4.794648 TGGCACTACCCCGCATGC 62.795 66.667 7.91 7.91 37.83 4.06
798 1684 2.824041 GTGGCACTACCCCGCATG 60.824 66.667 11.13 0.00 37.83 4.06
799 1685 3.326578 TGTGGCACTACCCCGCAT 61.327 61.111 19.83 0.00 37.90 4.73
821 1707 2.086251 CTCAGATCGGGCTCTCAGGC 62.086 65.000 0.00 0.00 40.51 4.85
824 1710 2.130426 GGCTCAGATCGGGCTCTCA 61.130 63.158 8.87 0.00 0.00 3.27
829 1715 2.892425 CAACGGCTCAGATCGGGC 60.892 66.667 1.37 1.37 0.00 6.13
837 1723 0.327924 ATTCATGGACCAACGGCTCA 59.672 50.000 0.00 0.00 0.00 4.26
854 1740 1.862602 GCAGTTTTGGCCGTCCGATT 61.863 55.000 0.00 0.00 34.14 3.34
878 1764 4.367450 AGACTCGTACGTACTATCTGACC 58.633 47.826 22.55 5.84 0.00 4.02
885 1771 4.314961 TGGAACAAGACTCGTACGTACTA 58.685 43.478 22.55 11.76 31.92 1.82
1078 1986 1.518302 GGGAGAAGAACTCGGAGGC 59.482 63.158 10.23 0.97 45.76 4.70
1189 2097 2.478031 CGGTCGATGATATAGGCGAAGG 60.478 54.545 0.00 0.00 34.29 3.46
1198 2106 4.428209 GCTGATCATTCGGTCGATGATAT 58.572 43.478 0.00 0.00 35.41 1.63
1205 2113 2.920964 CGCGCTGATCATTCGGTCG 61.921 63.158 5.56 9.95 33.63 4.79
1206 2114 2.589492 CCGCGCTGATCATTCGGTC 61.589 63.158 17.26 4.52 35.75 4.79
1208 2116 1.278172 CTACCGCGCTGATCATTCGG 61.278 60.000 21.42 21.42 45.04 4.30
1260 2168 0.978146 ATCAACCCTCTGTCTCCCCG 60.978 60.000 0.00 0.00 0.00 5.73
1261 2169 1.763545 GTATCAACCCTCTGTCTCCCC 59.236 57.143 0.00 0.00 0.00 4.81
1279 2223 0.038892 GAACCACCTGCGAAGACGTA 60.039 55.000 0.00 0.00 41.98 3.57
1280 2224 1.300697 GAACCACCTGCGAAGACGT 60.301 57.895 0.00 0.00 41.98 4.34
1284 2228 2.386661 ACTATGAACCACCTGCGAAG 57.613 50.000 0.00 0.00 0.00 3.79
1285 2229 2.851263 AACTATGAACCACCTGCGAA 57.149 45.000 0.00 0.00 0.00 4.70
1286 2230 2.851263 AAACTATGAACCACCTGCGA 57.149 45.000 0.00 0.00 0.00 5.10
1288 2232 4.378459 CGAAGAAAACTATGAACCACCTGC 60.378 45.833 0.00 0.00 0.00 4.85
1289 2233 4.994852 TCGAAGAAAACTATGAACCACCTG 59.005 41.667 0.00 0.00 0.00 4.00
1290 2234 5.223449 TCGAAGAAAACTATGAACCACCT 57.777 39.130 0.00 0.00 0.00 4.00
1302 2291 2.482721 TCCAGCCGATTTCGAAGAAAAC 59.517 45.455 0.67 0.00 45.90 2.43
1303 2292 2.773487 TCCAGCCGATTTCGAAGAAAA 58.227 42.857 0.67 0.00 45.90 2.29
1304 2293 2.465860 TCCAGCCGATTTCGAAGAAA 57.534 45.000 0.67 0.00 45.90 2.52
1305 2294 2.028476 TCTTCCAGCCGATTTCGAAGAA 60.028 45.455 0.67 0.00 45.90 2.52
1306 2295 1.548719 TCTTCCAGCCGATTTCGAAGA 59.451 47.619 0.67 0.00 43.02 2.87
1308 2297 2.465860 TTCTTCCAGCCGATTTCGAA 57.534 45.000 0.67 0.00 43.02 3.71
1309 2298 2.691409 ATTCTTCCAGCCGATTTCGA 57.309 45.000 0.67 0.00 43.02 3.71
1310 2299 4.119862 TCTTATTCTTCCAGCCGATTTCG 58.880 43.478 0.00 0.00 39.44 3.46
1311 2300 5.586643 ACTTCTTATTCTTCCAGCCGATTTC 59.413 40.000 0.00 0.00 0.00 2.17
1312 2301 5.501156 ACTTCTTATTCTTCCAGCCGATTT 58.499 37.500 0.00 0.00 0.00 2.17
1313 2302 5.104259 ACTTCTTATTCTTCCAGCCGATT 57.896 39.130 0.00 0.00 0.00 3.34
1314 2303 4.762289 ACTTCTTATTCTTCCAGCCGAT 57.238 40.909 0.00 0.00 0.00 4.18
1315 2304 5.670792 TTACTTCTTATTCTTCCAGCCGA 57.329 39.130 0.00 0.00 0.00 5.54
1316 2305 6.737254 TTTTACTTCTTATTCTTCCAGCCG 57.263 37.500 0.00 0.00 0.00 5.52
1317 2306 7.039993 TGGTTTTTACTTCTTATTCTTCCAGCC 60.040 37.037 0.00 0.00 0.00 4.85
1318 2307 7.882179 TGGTTTTTACTTCTTATTCTTCCAGC 58.118 34.615 0.00 0.00 0.00 4.85
1329 2318 8.194769 CCACAGTGTTAATGGTTTTTACTTCTT 58.805 33.333 0.00 0.00 0.00 2.52
1330 2319 7.558444 TCCACAGTGTTAATGGTTTTTACTTCT 59.442 33.333 0.00 0.00 34.89 2.85
1331 2320 7.646526 GTCCACAGTGTTAATGGTTTTTACTTC 59.353 37.037 0.00 0.00 34.89 3.01
1332 2321 7.340999 AGTCCACAGTGTTAATGGTTTTTACTT 59.659 33.333 0.00 0.00 34.89 2.24
1333 2322 6.831868 AGTCCACAGTGTTAATGGTTTTTACT 59.168 34.615 0.00 0.00 34.89 2.24
1334 2323 7.034685 AGTCCACAGTGTTAATGGTTTTTAC 57.965 36.000 0.00 0.00 34.89 2.01
1335 2324 7.648039 AAGTCCACAGTGTTAATGGTTTTTA 57.352 32.000 0.00 0.00 34.89 1.52
1336 2325 6.538945 AAGTCCACAGTGTTAATGGTTTTT 57.461 33.333 0.00 0.00 34.89 1.94
1337 2326 6.538945 AAAGTCCACAGTGTTAATGGTTTT 57.461 33.333 0.00 0.00 34.89 2.43
1338 2327 6.538945 AAAAGTCCACAGTGTTAATGGTTT 57.461 33.333 0.00 0.00 34.89 3.27
1339 2328 7.340999 ACTTAAAAGTCCACAGTGTTAATGGTT 59.659 33.333 0.00 0.00 32.86 3.67
1340 2329 6.831868 ACTTAAAAGTCCACAGTGTTAATGGT 59.168 34.615 0.00 0.00 32.86 3.55
1341 2330 7.272037 ACTTAAAAGTCCACAGTGTTAATGG 57.728 36.000 0.00 0.00 32.86 3.16
1342 2331 7.647715 CCAACTTAAAAGTCCACAGTGTTAATG 59.352 37.037 0.00 0.00 38.57 1.90
1343 2332 7.558444 TCCAACTTAAAAGTCCACAGTGTTAAT 59.442 33.333 0.00 0.00 38.57 1.40
1344 2333 6.885376 TCCAACTTAAAAGTCCACAGTGTTAA 59.115 34.615 0.00 0.00 38.57 2.01
1345 2334 6.316890 GTCCAACTTAAAAGTCCACAGTGTTA 59.683 38.462 0.00 0.00 38.57 2.41
1346 2335 5.124936 GTCCAACTTAAAAGTCCACAGTGTT 59.875 40.000 0.00 0.00 38.57 3.32
1347 2336 4.638865 GTCCAACTTAAAAGTCCACAGTGT 59.361 41.667 0.00 0.00 38.57 3.55
1348 2337 4.260620 CGTCCAACTTAAAAGTCCACAGTG 60.261 45.833 0.00 0.00 38.57 3.66
1349 2338 3.875134 CGTCCAACTTAAAAGTCCACAGT 59.125 43.478 0.00 0.00 38.57 3.55
1350 2339 4.124238 TCGTCCAACTTAAAAGTCCACAG 58.876 43.478 0.00 0.00 38.57 3.66
1351 2340 4.139859 TCGTCCAACTTAAAAGTCCACA 57.860 40.909 0.00 0.00 38.57 4.17
1352 2341 4.333372 TGTTCGTCCAACTTAAAAGTCCAC 59.667 41.667 0.00 0.00 38.57 4.02
1353 2342 4.515361 TGTTCGTCCAACTTAAAAGTCCA 58.485 39.130 0.00 0.00 38.57 4.02
1354 2343 4.024302 CCTGTTCGTCCAACTTAAAAGTCC 60.024 45.833 0.00 0.00 38.57 3.85
1355 2344 4.554134 GCCTGTTCGTCCAACTTAAAAGTC 60.554 45.833 0.00 0.00 38.57 3.01
1356 2345 3.314357 GCCTGTTCGTCCAACTTAAAAGT 59.686 43.478 0.00 0.00 42.04 2.66
1357 2346 3.304458 GGCCTGTTCGTCCAACTTAAAAG 60.304 47.826 0.00 0.00 35.79 2.27
1358 2347 2.619646 GGCCTGTTCGTCCAACTTAAAA 59.380 45.455 0.00 0.00 35.79 1.52
1359 2348 2.223745 GGCCTGTTCGTCCAACTTAAA 58.776 47.619 0.00 0.00 35.79 1.52
1360 2349 1.874739 CGGCCTGTTCGTCCAACTTAA 60.875 52.381 0.00 0.00 35.79 1.85
1361 2350 0.320073 CGGCCTGTTCGTCCAACTTA 60.320 55.000 0.00 0.00 35.79 2.24
1362 2351 1.597027 CGGCCTGTTCGTCCAACTT 60.597 57.895 0.00 0.00 35.79 2.66
1363 2352 2.030562 CGGCCTGTTCGTCCAACT 59.969 61.111 0.00 0.00 35.79 3.16
1364 2353 0.953960 ATTCGGCCTGTTCGTCCAAC 60.954 55.000 0.00 0.00 35.28 3.77
1365 2354 0.672401 GATTCGGCCTGTTCGTCCAA 60.672 55.000 0.00 0.00 0.00 3.53
1366 2355 1.079405 GATTCGGCCTGTTCGTCCA 60.079 57.895 0.00 0.00 0.00 4.02
1367 2356 1.814169 GGATTCGGCCTGTTCGTCC 60.814 63.158 0.00 0.00 0.00 4.79
1368 2357 2.165301 CGGATTCGGCCTGTTCGTC 61.165 63.158 0.00 0.00 0.00 4.20
1369 2358 2.125673 CGGATTCGGCCTGTTCGT 60.126 61.111 0.00 0.00 0.00 3.85
1385 2374 1.274798 GCACACAAAAATCACGCCCG 61.275 55.000 0.00 0.00 0.00 6.13
1387 2376 1.130955 CAGCACACAAAAATCACGCC 58.869 50.000 0.00 0.00 0.00 5.68
1388 2377 1.838913 ACAGCACACAAAAATCACGC 58.161 45.000 0.00 0.00 0.00 5.34
1389 2378 2.535166 CCAACAGCACACAAAAATCACG 59.465 45.455 0.00 0.00 0.00 4.35
1404 2394 6.583806 GCAACATTATTCTCAGTTTCCAACAG 59.416 38.462 0.00 0.00 0.00 3.16
1413 2403 7.758076 CACAATTGATGCAACATTATTCTCAGT 59.242 33.333 13.59 0.00 0.00 3.41
1416 2406 6.929896 GCACAATTGATGCAACATTATTCTC 58.070 36.000 20.83 0.00 42.88 2.87
1417 2407 6.897259 GCACAATTGATGCAACATTATTCT 57.103 33.333 20.83 0.00 42.88 2.40
1430 2420 5.185442 TGACACCATAATGTGCACAATTGAT 59.815 36.000 25.72 11.64 39.93 2.57
1435 2425 3.252944 CAGTGACACCATAATGTGCACAA 59.747 43.478 25.72 8.96 41.49 3.33
1437 2427 2.414559 GCAGTGACACCATAATGTGCAC 60.415 50.000 10.75 10.75 40.43 4.57
1455 2445 5.489792 TCCCTAGCTAATATTTCCAGCAG 57.510 43.478 10.54 6.41 37.78 4.24
1466 2456 9.732130 GATTCTTTGACATAATCCCTAGCTAAT 57.268 33.333 0.00 0.00 0.00 1.73
1473 2463 6.595682 ACATCGATTCTTTGACATAATCCCT 58.404 36.000 0.00 0.00 0.00 4.20
1474 2464 6.867662 ACATCGATTCTTTGACATAATCCC 57.132 37.500 0.00 0.00 0.00 3.85
1477 2467 9.912634 AAACAAACATCGATTCTTTGACATAAT 57.087 25.926 23.23 5.62 0.00 1.28
1478 2468 9.393249 GAAACAAACATCGATTCTTTGACATAA 57.607 29.630 23.23 0.00 0.00 1.90
1479 2469 8.563732 TGAAACAAACATCGATTCTTTGACATA 58.436 29.630 23.23 10.30 0.00 2.29
1480 2470 7.379529 GTGAAACAAACATCGATTCTTTGACAT 59.620 33.333 23.23 13.09 36.32 3.06
1481 2471 6.690957 GTGAAACAAACATCGATTCTTTGACA 59.309 34.615 23.23 17.75 36.32 3.58
1484 2474 5.976534 TGGTGAAACAAACATCGATTCTTTG 59.023 36.000 17.95 17.95 39.98 2.77
1485 2475 6.142818 TGGTGAAACAAACATCGATTCTTT 57.857 33.333 0.00 0.00 39.98 2.52
1486 2476 5.766150 TGGTGAAACAAACATCGATTCTT 57.234 34.783 0.00 0.00 39.98 2.52
1487 2477 5.766150 TTGGTGAAACAAACATCGATTCT 57.234 34.783 0.00 0.00 39.98 2.40
1488 2478 6.820470 TTTTGGTGAAACAAACATCGATTC 57.180 33.333 0.00 0.00 39.82 2.52
1514 2785 9.830975 ACTTTGGCTCAATTGTTTTTAAATACT 57.169 25.926 5.13 0.00 0.00 2.12
1517 2788 8.504812 ACACTTTGGCTCAATTGTTTTTAAAT 57.495 26.923 5.13 0.00 0.00 1.40
1525 2796 3.490348 AGCTACACTTTGGCTCAATTGT 58.510 40.909 5.13 7.42 0.00 2.71
1526 2797 4.697352 AGTAGCTACACTTTGGCTCAATTG 59.303 41.667 25.28 0.00 37.50 2.32
1527 2798 4.697352 CAGTAGCTACACTTTGGCTCAATT 59.303 41.667 25.28 0.00 37.50 2.32
1528 2799 4.020218 TCAGTAGCTACACTTTGGCTCAAT 60.020 41.667 25.28 0.00 37.50 2.57
1529 2800 3.323691 TCAGTAGCTACACTTTGGCTCAA 59.676 43.478 25.28 0.00 37.50 3.02
1530 2801 2.897326 TCAGTAGCTACACTTTGGCTCA 59.103 45.455 25.28 0.00 37.50 4.26
1531 2802 3.594603 TCAGTAGCTACACTTTGGCTC 57.405 47.619 25.28 0.00 37.50 4.70
1532 2803 3.071023 TGTTCAGTAGCTACACTTTGGCT 59.929 43.478 25.28 0.00 39.74 4.75
1533 2804 3.399330 TGTTCAGTAGCTACACTTTGGC 58.601 45.455 25.28 11.46 0.00 4.52
1534 2805 4.883083 TCTGTTCAGTAGCTACACTTTGG 58.117 43.478 25.28 11.16 0.00 3.28
1535 2806 7.316640 AGTATCTGTTCAGTAGCTACACTTTG 58.683 38.462 25.28 14.60 0.00 2.77
1536 2807 7.469537 AGTATCTGTTCAGTAGCTACACTTT 57.530 36.000 25.28 1.85 0.00 2.66
1537 2808 6.183360 CGAGTATCTGTTCAGTAGCTACACTT 60.183 42.308 25.28 2.25 0.00 3.16
1538 2809 5.294799 CGAGTATCTGTTCAGTAGCTACACT 59.705 44.000 25.28 15.62 0.00 3.55
1539 2810 5.293814 TCGAGTATCTGTTCAGTAGCTACAC 59.706 44.000 25.28 15.14 0.00 2.90
1540 2811 5.425630 TCGAGTATCTGTTCAGTAGCTACA 58.574 41.667 25.28 6.37 0.00 2.74
1541 2812 5.524646 ACTCGAGTATCTGTTCAGTAGCTAC 59.475 44.000 18.46 16.43 0.00 3.58
1542 2813 5.672503 ACTCGAGTATCTGTTCAGTAGCTA 58.327 41.667 18.46 0.00 0.00 3.32
1543 2814 4.519213 ACTCGAGTATCTGTTCAGTAGCT 58.481 43.478 18.46 0.00 0.00 3.32
1575 2846 7.493645 TCAGATATTCTGTACTCGAGTCGTTAA 59.506 37.037 23.89 13.04 44.58 2.01
1625 2896 2.037772 AGTAAGGCATCCCATTCTAGCG 59.962 50.000 0.00 0.00 0.00 4.26
1662 3015 1.308047 TGCAAACTGGCAGTACACAG 58.692 50.000 22.37 10.12 39.25 3.66
1663 3016 1.756430 TTGCAAACTGGCAGTACACA 58.244 45.000 22.37 15.73 45.88 3.72
1664 3017 2.861462 TTTGCAAACTGGCAGTACAC 57.139 45.000 22.37 13.23 45.88 2.90
1669 3022 8.876275 AAATATACATATTTGCAAACTGGCAG 57.124 30.769 15.41 14.16 45.88 4.85
1722 3075 6.774656 ACAGATGGAAAGGAGCATTAATAAGG 59.225 38.462 0.00 0.00 0.00 2.69
1723 3076 7.814264 ACAGATGGAAAGGAGCATTAATAAG 57.186 36.000 0.00 0.00 0.00 1.73
1743 3096 4.389890 AGCTGCAAAACATCAAAACAGA 57.610 36.364 1.02 0.00 0.00 3.41
1791 3144 4.929808 GTCCCATTGCGTACCTATCAATAG 59.070 45.833 0.00 0.00 0.00 1.73
1822 3175 1.677052 GAAGCCAAAAACACCGGTACA 59.323 47.619 6.87 0.00 0.00 2.90
1825 3178 2.351706 TAGAAGCCAAAAACACCGGT 57.648 45.000 0.00 0.00 0.00 5.28
1855 3208 8.887036 ACAGAAATATGAAACCCAAAAACTTC 57.113 30.769 0.00 0.00 0.00 3.01
1932 3287 5.106317 GCCAGTTGCAAAAGCTGTAAGTATA 60.106 40.000 0.00 0.00 40.77 1.47
1995 3350 5.500234 AGGCATAACATTAGCAGTGAGAAA 58.500 37.500 0.00 0.00 0.00 2.52
2068 3423 7.992033 AGAGATACTTGGAGATTGAAAAGATGG 59.008 37.037 0.00 0.00 0.00 3.51
2116 3471 3.402628 AAATTGCTCAGGTACTCGTGT 57.597 42.857 0.00 0.00 34.60 4.49
2139 3494 5.822584 CGCATCTATTGAGCGTATTACAA 57.177 39.130 10.86 0.00 45.82 2.41
2160 3515 5.928839 AGATAAAGCTTGCTATGGTGATACG 59.071 40.000 0.00 0.00 0.00 3.06
2185 3540 1.587054 CCGCGGGGCTAGATAGAAG 59.413 63.158 20.10 0.00 0.00 2.85
2198 3553 3.061848 AACAATTGGGAGCCGCGG 61.062 61.111 24.05 24.05 0.00 6.46
2199 3554 2.179018 CAACAATTGGGAGCCGCG 59.821 61.111 10.83 0.00 0.00 6.46
2212 3567 7.386059 TGAATAGAGCAATAGAAGTGACAACA 58.614 34.615 0.00 0.00 0.00 3.33
2216 3571 7.834068 TGTTGAATAGAGCAATAGAAGTGAC 57.166 36.000 0.00 0.00 0.00 3.67
2286 3641 6.049790 GGTAACAATCATCCTGGTAGAAGTC 58.950 44.000 0.00 0.00 0.00 3.01
2309 3664 7.553881 ACAATCATCAAAAGTACCTAATCGG 57.446 36.000 0.00 0.00 39.35 4.18
2310 3665 9.916397 GTAACAATCATCAAAAGTACCTAATCG 57.084 33.333 0.00 0.00 0.00 3.34
2315 3670 9.520515 AATCAGTAACAATCATCAAAAGTACCT 57.479 29.630 0.00 0.00 0.00 3.08
2319 3674 9.520515 ACCTAATCAGTAACAATCATCAAAAGT 57.479 29.630 0.00 0.00 0.00 2.66
2330 3685 9.787435 ACATCAAAAGTACCTAATCAGTAACAA 57.213 29.630 0.00 0.00 0.00 2.83
2331 3686 9.787435 AACATCAAAAGTACCTAATCAGTAACA 57.213 29.630 0.00 0.00 0.00 2.41
2333 3688 9.146984 CGAACATCAAAAGTACCTAATCAGTAA 57.853 33.333 0.00 0.00 0.00 2.24
2334 3689 8.525316 TCGAACATCAAAAGTACCTAATCAGTA 58.475 33.333 0.00 0.00 0.00 2.74
2343 3698 6.781138 TGCAATATCGAACATCAAAAGTACC 58.219 36.000 0.00 0.00 0.00 3.34
2350 3705 5.572511 GCAAAACTGCAATATCGAACATCAA 59.427 36.000 0.00 0.00 34.41 2.57
2388 3743 7.759489 TTCTGACAATGCTTATAACCTTGTT 57.241 32.000 8.75 0.00 30.63 2.83
2570 3927 6.268566 GCCACAAATATGAGTTGATCCTTTC 58.731 40.000 0.00 0.00 0.00 2.62
2673 4039 8.941127 TGTTGTAACTGAAATTTTGCAAAAAC 57.059 26.923 27.10 20.14 30.50 2.43
2681 4049 8.062065 TCTGGTTCTGTTGTAACTGAAATTTT 57.938 30.769 15.54 0.00 44.66 1.82
2782 4150 4.265073 ACCGAGTAGACCAACGTATAGTT 58.735 43.478 0.00 0.00 45.45 2.24
2924 4292 3.257393 CTTCCTGAATCTGTTGAGACGG 58.743 50.000 0.00 0.00 0.00 4.79
2982 4350 2.034558 ACGAACCGGAAGAGACGTTTAA 59.965 45.455 9.46 0.00 31.63 1.52
3018 4393 0.961753 GGAGCCAAGAAACCCACAAG 59.038 55.000 0.00 0.00 0.00 3.16
3027 4402 5.755409 TTCAACTATACAGGAGCCAAGAA 57.245 39.130 0.00 0.00 0.00 2.52
3088 4463 3.018856 TCCAAGCATAACTCTGCAATGG 58.981 45.455 12.14 12.14 45.45 3.16
3115 4490 0.107654 GCCCTGGTGCACCTTACTAG 60.108 60.000 34.75 23.06 36.82 2.57
3116 4491 0.838554 TGCCCTGGTGCACCTTACTA 60.839 55.000 34.75 14.91 36.04 1.82
3117 4492 2.153401 TGCCCTGGTGCACCTTACT 61.153 57.895 34.75 0.00 36.04 2.24
3158 4533 2.310052 CCCCTTCACCTCCAAAAGAGAT 59.690 50.000 0.00 0.00 46.50 2.75
3160 4535 1.272147 CCCCCTTCACCTCCAAAAGAG 60.272 57.143 0.00 0.00 42.83 2.85
3276 4817 9.185680 TGCTCTACTGTAAGATAATCACAAGTA 57.814 33.333 0.00 0.00 37.43 2.24
3379 4943 5.816777 GGAGAGATTTGAAAGGAGACATCAG 59.183 44.000 0.00 0.00 31.34 2.90
3502 5066 9.204570 GTAGAATTGTTACTGATACAAGTGTGT 57.795 33.333 0.00 0.00 38.74 3.72
3503 5067 9.203421 TGTAGAATTGTTACTGATACAAGTGTG 57.797 33.333 0.00 0.00 38.74 3.82
3534 5100 5.706369 ACGCCTGGTTGTGTTTTGTTATATA 59.294 36.000 0.00 0.00 0.00 0.86
3544 5110 3.258872 TGTAGTATACGCCTGGTTGTGTT 59.741 43.478 0.00 0.00 46.99 3.32
3551 5117 3.118884 AGGTTGTTGTAGTATACGCCTGG 60.119 47.826 0.00 0.00 46.99 4.45
3567 5133 6.667558 ACTAGTAGTCTAAGCAAAGGTTGT 57.332 37.500 0.00 0.00 0.00 3.32
3569 5135 8.591114 TCATACTAGTAGTCTAAGCAAAGGTT 57.409 34.615 5.96 0.00 0.00 3.50
3571 5137 8.228035 ACTCATACTAGTAGTCTAAGCAAAGG 57.772 38.462 5.96 0.00 0.00 3.11
3623 5291 3.361644 GGCAAATGCGCATATACGAAATG 59.638 43.478 25.61 12.90 43.26 2.32
3624 5292 3.004210 TGGCAAATGCGCATATACGAAAT 59.996 39.130 25.61 1.45 43.26 2.17
3705 5373 4.683781 GGCAAGTTTCAAACATCGCATTTA 59.316 37.500 2.41 0.00 0.00 1.40
3718 5386 7.106439 TCTGAAATAAAACAGGCAAGTTTCA 57.894 32.000 8.25 0.00 40.60 2.69
3721 5389 6.479990 GCTTTCTGAAATAAAACAGGCAAGTT 59.520 34.615 2.88 0.00 35.20 2.66
3786 5454 2.160417 CGAGGTTGAAGGAGAACATTGC 59.840 50.000 0.00 0.00 0.00 3.56
3830 5498 0.394192 TTCAGCAGGGTCAGAGTGTG 59.606 55.000 0.00 0.00 0.00 3.82
3845 5513 2.435586 CTGCGCTGGGGTCTTCAG 60.436 66.667 9.73 0.00 35.49 3.02
3884 5552 3.541713 GTAGCCGAGAGCCTGGGG 61.542 72.222 0.00 0.00 45.47 4.96
3926 5594 2.425143 TGGGCAGGATGAAAGATGTC 57.575 50.000 0.00 0.00 39.69 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.