Multiple sequence alignment - TraesCS3A01G362100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G362100 chr3A 100.000 3464 0 0 1 3464 610043677 610040214 0.000000e+00 6397.0
1 TraesCS3A01G362100 chr3B 90.924 3096 130 58 31 3022 621537209 621534161 0.000000e+00 4021.0
2 TraesCS3A01G362100 chr3B 90.506 316 26 4 1192 1505 550022926 550022613 6.920000e-112 414.0
3 TraesCS3A01G362100 chr3B 92.424 66 5 0 1089 1154 550022987 550022922 1.020000e-15 95.3
4 TraesCS3A01G362100 chr3B 90.164 61 3 3 2045 2102 720956536 720956596 3.710000e-10 76.8
5 TraesCS3A01G362100 chr3D 90.921 3095 118 49 31 3038 467476085 467473067 0.000000e+00 4008.0
6 TraesCS3A01G362100 chr5D 94.131 426 19 4 3044 3464 530155259 530155683 0.000000e+00 643.0
7 TraesCS3A01G362100 chr4D 93.632 424 26 1 3041 3464 477757180 477757602 1.750000e-177 632.0
8 TraesCS3A01G362100 chr4D 87.589 419 48 3 3044 3461 488658760 488659175 1.870000e-132 483.0
9 TraesCS3A01G362100 chr5A 92.217 424 33 0 3041 3464 89705706 89705283 4.950000e-168 601.0
10 TraesCS3A01G362100 chr5A 92.428 383 29 0 3072 3454 631266585 631266967 6.540000e-152 547.0
11 TraesCS3A01G362100 chr5A 94.602 352 18 1 3041 3392 549151346 549150996 8.460000e-151 544.0
12 TraesCS3A01G362100 chr4B 91.866 418 32 2 3048 3464 584950770 584950354 1.790000e-162 582.0
13 TraesCS3A01G362100 chr4A 91.990 412 32 1 3053 3464 146697340 146696930 8.340000e-161 577.0
14 TraesCS3A01G362100 chr4A 88.846 260 26 3 1192 1450 690086269 690086012 2.010000e-82 316.0
15 TraesCS3A01G362100 chr4A 93.939 66 4 0 1089 1154 690086330 690086265 2.200000e-17 100.0
16 TraesCS3A01G362100 chr7B 88.471 425 45 4 3040 3464 498564479 498564899 8.580000e-141 510.0
17 TraesCS3A01G362100 chr2B 90.282 319 27 4 1189 1505 742766572 742766888 6.920000e-112 414.0
18 TraesCS3A01G362100 chr2B 94.545 55 3 0 1089 1143 742766506 742766560 6.160000e-13 86.1
19 TraesCS3A01G362100 chr2A 86.890 328 29 5 1189 1505 393708753 393709077 4.250000e-94 355.0
20 TraesCS3A01G362100 chr2A 94.286 70 4 0 1621 1690 4383074 4383005 1.310000e-19 108.0
21 TraesCS3A01G362100 chr2A 95.000 60 3 0 1089 1148 393708695 393708754 1.020000e-15 95.3
22 TraesCS3A01G362100 chr7D 94.286 70 4 0 1621 1690 602679634 602679703 1.310000e-19 108.0
23 TraesCS3A01G362100 chr5B 93.939 66 2 2 1621 1684 10522694 10522759 7.910000e-17 99.0
24 TraesCS3A01G362100 chr6D 90.909 66 6 0 1089 1154 124650348 124650283 4.760000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G362100 chr3A 610040214 610043677 3463 True 6397 6397 100.000 1 3464 1 chr3A.!!$R1 3463
1 TraesCS3A01G362100 chr3B 621534161 621537209 3048 True 4021 4021 90.924 31 3022 1 chr3B.!!$R1 2991
2 TraesCS3A01G362100 chr3D 467473067 467476085 3018 True 4008 4008 90.921 31 3038 1 chr3D.!!$R1 3007

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
367 387 0.033228 CAGCAGATCCCGATCCAGTC 59.967 60.0 1.0 0.0 38.58 3.51 F
652 716 0.179009 CATCGCCATCCCCACATCTT 60.179 55.0 0.0 0.0 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1185 1290 1.218316 GGAGTTGAGGTAGGCCACG 59.782 63.158 5.01 0.0 37.19 4.94 R
2605 2719 1.788229 ACACCAACCCCTCCAAAAAG 58.212 50.000 0.00 0.0 0.00 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.446570 GCTCACCCAGCCATGTGC 61.447 66.667 0.00 0.00 43.17 4.57
139 150 2.986479 CGACGAGAACATGATCAACACA 59.014 45.455 0.00 0.00 0.00 3.72
140 151 3.428534 CGACGAGAACATGATCAACACAA 59.571 43.478 0.00 0.00 0.00 3.33
141 152 4.664139 CGACGAGAACATGATCAACACAAC 60.664 45.833 0.00 0.00 0.00 3.32
142 153 4.126437 ACGAGAACATGATCAACACAACA 58.874 39.130 0.00 0.00 0.00 3.33
143 154 4.024893 ACGAGAACATGATCAACACAACAC 60.025 41.667 0.00 0.00 0.00 3.32
191 206 5.116882 ACGGCTGAACCAGATTTCTTATAC 58.883 41.667 0.00 0.00 39.03 1.47
212 231 1.279271 CGGAAGGGAACTCCAAGATGT 59.721 52.381 0.00 0.00 42.68 3.06
214 233 2.305927 GGAAGGGAACTCCAAGATGTCA 59.694 50.000 0.00 0.00 42.68 3.58
216 235 4.164221 GGAAGGGAACTCCAAGATGTCATA 59.836 45.833 0.00 0.00 42.68 2.15
217 236 4.762289 AGGGAACTCCAAGATGTCATAC 57.238 45.455 0.00 0.00 32.90 2.39
218 237 4.366267 AGGGAACTCCAAGATGTCATACT 58.634 43.478 0.00 0.00 32.90 2.12
219 238 4.163078 AGGGAACTCCAAGATGTCATACTG 59.837 45.833 0.00 0.00 32.90 2.74
220 239 3.873952 GGAACTCCAAGATGTCATACTGC 59.126 47.826 0.00 0.00 35.64 4.40
224 243 4.655649 ACTCCAAGATGTCATACTGCCATA 59.344 41.667 0.00 0.00 0.00 2.74
272 291 3.062234 GTCTCGGTAATTTCGCAGGAAAG 59.938 47.826 0.00 0.00 44.81 2.62
288 307 0.751643 AAAGGATCAATTCCCGGGCG 60.752 55.000 18.49 3.88 46.81 6.13
301 320 1.046472 CCGGGCGCCCCAGATATATA 61.046 60.000 39.24 0.00 45.83 0.86
302 321 1.048601 CGGGCGCCCCAGATATATAT 58.951 55.000 39.24 0.00 45.83 0.86
303 322 1.416401 CGGGCGCCCCAGATATATATT 59.584 52.381 39.24 0.00 45.83 1.28
340 359 3.441290 CGGCGAGGAACGAGACCT 61.441 66.667 0.00 0.00 45.77 3.85
351 371 2.320587 CGAGACCTGCACAACCAGC 61.321 63.158 0.00 0.00 0.00 4.85
363 383 0.533755 CAACCAGCAGATCCCGATCC 60.534 60.000 1.00 0.00 38.58 3.36
367 387 0.033228 CAGCAGATCCCGATCCAGTC 59.967 60.000 1.00 0.00 38.58 3.51
368 388 1.118356 AGCAGATCCCGATCCAGTCC 61.118 60.000 1.00 0.00 38.58 3.85
369 389 1.662608 CAGATCCCGATCCAGTCCG 59.337 63.158 1.00 0.00 38.58 4.79
370 390 1.109920 CAGATCCCGATCCAGTCCGT 61.110 60.000 1.00 0.00 38.58 4.69
414 434 3.522731 CTCGGACCGAGCCAGAGG 61.523 72.222 29.77 6.81 46.75 3.69
539 595 3.583086 GCGCCTACCATTTCGCCC 61.583 66.667 0.00 0.00 41.53 6.13
579 643 2.037527 ACCGTGTCTCCCTCCTCC 59.962 66.667 0.00 0.00 0.00 4.30
580 644 2.360980 CCGTGTCTCCCTCCTCCT 59.639 66.667 0.00 0.00 0.00 3.69
581 645 1.755008 CCGTGTCTCCCTCCTCCTC 60.755 68.421 0.00 0.00 0.00 3.71
652 716 0.179009 CATCGCCATCCCCACATCTT 60.179 55.000 0.00 0.00 0.00 2.40
713 804 2.096442 GCGGCCCGCGGTATATAAC 61.096 63.158 26.12 2.47 44.55 1.89
726 817 5.555818 GCGGTATATAACAAAGTTCGTGAGC 60.556 44.000 0.00 0.00 0.00 4.26
766 857 3.547513 CCAGCCTAGCCCGTACCC 61.548 72.222 0.00 0.00 0.00 3.69
801 893 3.738246 CTGGCACTGCTGCTGCTG 61.738 66.667 18.66 18.66 43.66 4.41
804 896 4.406173 GCACTGCTGCTGCTGCTG 62.406 66.667 27.75 27.75 40.63 4.41
813 905 2.510238 CTGCTGCTGCTACGGGAC 60.510 66.667 17.00 0.00 40.48 4.46
876 968 0.734889 CGTCCATGGCTTGATTGTCC 59.265 55.000 6.96 0.00 0.00 4.02
884 976 1.702491 GCTTGATTGTCCGCCCGTAC 61.702 60.000 0.00 0.00 0.00 3.67
933 1038 0.458025 CGAGAAAGGTACCGACAGGC 60.458 60.000 6.18 0.00 42.76 4.85
953 1058 1.290203 CGTGCCGCTGATTCATTACT 58.710 50.000 0.00 0.00 0.00 2.24
954 1059 2.469826 CGTGCCGCTGATTCATTACTA 58.530 47.619 0.00 0.00 0.00 1.82
955 1060 2.218759 CGTGCCGCTGATTCATTACTAC 59.781 50.000 0.00 0.00 0.00 2.73
973 1078 1.830408 CTAGGTGGGAGGGAGCGAG 60.830 68.421 0.00 0.00 0.00 5.03
978 1083 4.168291 GGGAGGGAGCGAGGCAAG 62.168 72.222 0.00 0.00 0.00 4.01
980 1085 3.077556 GAGGGAGCGAGGCAAGGA 61.078 66.667 0.00 0.00 0.00 3.36
1665 1770 2.036098 TACGAGAAGGCCGTGGGA 59.964 61.111 0.00 0.00 40.76 4.37
2073 2178 2.590645 CTGCTGCAGATGGAGGCT 59.409 61.111 24.88 0.00 32.44 4.58
2551 2665 4.444733 CCTTGTCCAAAGCCCATTCTTTTT 60.445 41.667 0.00 0.00 34.31 1.94
2552 2666 4.335400 TGTCCAAAGCCCATTCTTTTTC 57.665 40.909 0.00 0.00 34.31 2.29
2553 2667 3.070878 TGTCCAAAGCCCATTCTTTTTCC 59.929 43.478 0.00 0.00 34.31 3.13
2605 2719 7.704789 AAGCAATTGATTTGAAGAGTTGAAC 57.295 32.000 10.34 0.00 37.53 3.18
2671 2799 0.532573 TAGTGGACTGTAGCAGCAGC 59.467 55.000 7.35 0.00 39.96 5.25
2673 2801 1.018226 GTGGACTGTAGCAGCAGCAG 61.018 60.000 3.17 12.89 45.49 4.24
2674 2802 1.294780 GGACTGTAGCAGCAGCAGT 59.705 57.895 18.20 18.20 44.97 4.40
2675 2803 0.532573 GGACTGTAGCAGCAGCAGTA 59.467 55.000 18.18 0.00 42.71 2.74
2676 2804 1.066858 GGACTGTAGCAGCAGCAGTAA 60.067 52.381 18.18 0.00 42.71 2.24
2677 2805 2.419297 GGACTGTAGCAGCAGCAGTAAT 60.419 50.000 18.18 0.96 42.71 1.89
2678 2806 2.863137 GACTGTAGCAGCAGCAGTAATC 59.137 50.000 18.18 6.40 42.71 1.75
2679 2807 1.857217 CTGTAGCAGCAGCAGTAATCG 59.143 52.381 3.17 0.00 45.49 3.34
2680 2808 1.204704 TGTAGCAGCAGCAGTAATCGT 59.795 47.619 3.17 0.00 45.49 3.73
2683 2811 1.066573 AGCAGCAGCAGTAATCGTTCT 60.067 47.619 3.17 0.00 45.49 3.01
2688 2816 3.929610 AGCAGCAGTAATCGTTCTTTCTC 59.070 43.478 0.00 0.00 0.00 2.87
2714 2842 7.194112 AGTTTGAAAATTTGGAGGGAGAAAA 57.806 32.000 0.00 0.00 0.00 2.29
2758 2889 1.608055 CCACTTCACTGTCAATGGCA 58.392 50.000 0.00 0.00 0.00 4.92
2759 2890 1.955778 CCACTTCACTGTCAATGGCAA 59.044 47.619 0.00 0.00 0.00 4.52
2760 2891 2.559668 CCACTTCACTGTCAATGGCAAT 59.440 45.455 0.00 0.00 0.00 3.56
2761 2892 3.571571 CACTTCACTGTCAATGGCAATG 58.428 45.455 0.00 0.00 0.00 2.82
2763 2894 0.889994 TCACTGTCAATGGCAATGGC 59.110 50.000 0.00 0.00 40.13 4.40
2764 2895 0.457166 CACTGTCAATGGCAATGGCG 60.457 55.000 2.29 0.41 42.47 5.69
2766 2897 0.457166 CTGTCAATGGCAATGGCGTG 60.457 55.000 1.22 3.02 42.47 5.34
2767 2898 0.892814 TGTCAATGGCAATGGCGTGA 60.893 50.000 1.22 5.59 42.47 4.35
2768 2899 0.179156 GTCAATGGCAATGGCGTGAG 60.179 55.000 12.12 4.65 42.47 3.51
2769 2900 1.140161 CAATGGCAATGGCGTGAGG 59.860 57.895 1.22 0.00 42.47 3.86
2829 2960 2.702261 GGCCGGTGTATAAGTTTGTCA 58.298 47.619 1.90 0.00 0.00 3.58
2851 2982 8.865978 TGTCAGATTTGTACGTACAATGAATAC 58.134 33.333 34.66 27.86 44.72 1.89
2852 2983 8.865978 GTCAGATTTGTACGTACAATGAATACA 58.134 33.333 34.66 21.67 44.72 2.29
2872 3003 9.393249 GAATACACACGATTGATTCTTTGAAAA 57.607 29.630 0.00 0.00 0.00 2.29
2900 3032 1.654137 GTTGTTCAAGCACGCACGG 60.654 57.895 0.00 0.00 0.00 4.94
2938 3070 1.622312 ACGGTTCTCCTGTCCTTTACC 59.378 52.381 0.00 0.00 0.00 2.85
3005 3138 5.121298 CACATTGATACCTGTCTGACTTGTG 59.879 44.000 9.51 5.53 0.00 3.33
3008 3141 4.631131 TGATACCTGTCTGACTTGTGTTG 58.369 43.478 9.51 0.00 0.00 3.33
3015 3148 1.758280 TCTGACTTGTGTTGTACCCGT 59.242 47.619 0.00 0.00 0.00 5.28
3038 3171 2.047274 ACTCCACGCGGTGAATGG 60.047 61.111 12.47 8.97 35.23 3.16
3039 3172 3.499737 CTCCACGCGGTGAATGGC 61.500 66.667 12.47 0.00 35.23 4.40
3040 3173 3.958147 CTCCACGCGGTGAATGGCT 62.958 63.158 12.47 0.00 35.23 4.75
3041 3174 3.055719 CCACGCGGTGAATGGCTT 61.056 61.111 12.47 0.00 35.23 4.35
3042 3175 1.743623 CCACGCGGTGAATGGCTTA 60.744 57.895 12.47 0.00 35.23 3.09
3043 3176 1.095228 CCACGCGGTGAATGGCTTAT 61.095 55.000 12.47 0.00 35.23 1.73
3044 3177 0.732571 CACGCGGTGAATGGCTTATT 59.267 50.000 12.47 0.00 35.23 1.40
3045 3178 1.132262 CACGCGGTGAATGGCTTATTT 59.868 47.619 12.47 0.00 35.23 1.40
3046 3179 1.400494 ACGCGGTGAATGGCTTATTTC 59.600 47.619 12.47 0.00 0.00 2.17
3047 3180 1.670811 CGCGGTGAATGGCTTATTTCT 59.329 47.619 0.00 0.00 0.00 2.52
3048 3181 2.097466 CGCGGTGAATGGCTTATTTCTT 59.903 45.455 0.00 0.00 0.00 2.52
3049 3182 3.427503 CGCGGTGAATGGCTTATTTCTTT 60.428 43.478 0.00 0.00 0.00 2.52
3050 3183 4.494484 GCGGTGAATGGCTTATTTCTTTT 58.506 39.130 0.00 0.00 0.00 2.27
3051 3184 4.929211 GCGGTGAATGGCTTATTTCTTTTT 59.071 37.500 0.00 0.00 0.00 1.94
3052 3185 6.096695 GCGGTGAATGGCTTATTTCTTTTTA 58.903 36.000 0.00 0.00 0.00 1.52
3053 3186 6.588373 GCGGTGAATGGCTTATTTCTTTTTAA 59.412 34.615 0.00 0.00 0.00 1.52
3054 3187 7.117092 GCGGTGAATGGCTTATTTCTTTTTAAA 59.883 33.333 0.00 0.00 0.00 1.52
3055 3188 8.432359 CGGTGAATGGCTTATTTCTTTTTAAAC 58.568 33.333 0.00 0.00 0.00 2.01
3056 3189 8.432359 GGTGAATGGCTTATTTCTTTTTAAACG 58.568 33.333 0.00 0.00 0.00 3.60
3057 3190 9.187455 GTGAATGGCTTATTTCTTTTTAAACGA 57.813 29.630 0.00 0.00 0.00 3.85
3058 3191 9.405587 TGAATGGCTTATTTCTTTTTAAACGAG 57.594 29.630 0.00 0.00 0.00 4.18
3059 3192 8.757164 AATGGCTTATTTCTTTTTAAACGAGG 57.243 30.769 0.00 0.00 0.00 4.63
3060 3193 6.153756 TGGCTTATTTCTTTTTAAACGAGGC 58.846 36.000 0.00 0.00 33.47 4.70
3061 3194 6.153756 GGCTTATTTCTTTTTAAACGAGGCA 58.846 36.000 0.00 0.00 33.27 4.75
3062 3195 6.643360 GGCTTATTTCTTTTTAAACGAGGCAA 59.357 34.615 0.00 0.00 33.27 4.52
3063 3196 7.170151 GGCTTATTTCTTTTTAAACGAGGCAAA 59.830 33.333 0.00 0.00 33.27 3.68
3064 3197 8.544597 GCTTATTTCTTTTTAAACGAGGCAAAA 58.455 29.630 0.00 0.00 0.00 2.44
3066 3199 9.804758 TTATTTCTTTTTAAACGAGGCAAAAGA 57.195 25.926 10.94 10.94 41.37 2.52
3067 3200 7.514573 TTTCTTTTTAAACGAGGCAAAAGAC 57.485 32.000 13.22 0.00 42.28 3.01
3068 3201 6.445357 TCTTTTTAAACGAGGCAAAAGACT 57.555 33.333 10.94 0.00 39.30 3.24
3069 3202 6.859017 TCTTTTTAAACGAGGCAAAAGACTT 58.141 32.000 10.94 0.00 39.30 3.01
3070 3203 6.750039 TCTTTTTAAACGAGGCAAAAGACTTG 59.250 34.615 10.94 0.00 39.30 3.16
3071 3204 2.492019 AAACGAGGCAAAAGACTTGC 57.508 45.000 0.78 0.78 44.22 4.01
3081 3214 5.025986 GCAAAAGACTTGCCATTTCATTG 57.974 39.130 0.00 0.00 39.38 2.82
3082 3215 4.751098 GCAAAAGACTTGCCATTTCATTGA 59.249 37.500 0.00 0.00 39.38 2.57
3083 3216 5.410439 GCAAAAGACTTGCCATTTCATTGAT 59.590 36.000 0.00 0.00 39.38 2.57
3084 3217 6.072893 GCAAAAGACTTGCCATTTCATTGATT 60.073 34.615 0.00 0.00 39.38 2.57
3085 3218 7.118101 GCAAAAGACTTGCCATTTCATTGATTA 59.882 33.333 0.00 0.00 39.38 1.75
3086 3219 8.991026 CAAAAGACTTGCCATTTCATTGATTAA 58.009 29.630 0.00 0.00 0.00 1.40
3087 3220 8.767478 AAAGACTTGCCATTTCATTGATTAAG 57.233 30.769 0.00 0.00 0.00 1.85
3088 3221 7.707624 AGACTTGCCATTTCATTGATTAAGA 57.292 32.000 0.00 0.00 0.00 2.10
3089 3222 7.769220 AGACTTGCCATTTCATTGATTAAGAG 58.231 34.615 0.00 0.00 0.00 2.85
3090 3223 7.613022 AGACTTGCCATTTCATTGATTAAGAGA 59.387 33.333 0.00 0.00 0.00 3.10
3091 3224 7.769220 ACTTGCCATTTCATTGATTAAGAGAG 58.231 34.615 0.00 0.00 0.00 3.20
3092 3225 7.613022 ACTTGCCATTTCATTGATTAAGAGAGA 59.387 33.333 0.00 0.00 0.00 3.10
3093 3226 7.563888 TGCCATTTCATTGATTAAGAGAGAG 57.436 36.000 0.00 0.00 0.00 3.20
3094 3227 7.114754 TGCCATTTCATTGATTAAGAGAGAGT 58.885 34.615 0.00 0.00 0.00 3.24
3095 3228 8.267183 TGCCATTTCATTGATTAAGAGAGAGTA 58.733 33.333 0.00 0.00 0.00 2.59
3096 3229 9.113838 GCCATTTCATTGATTAAGAGAGAGTAA 57.886 33.333 0.00 0.00 0.00 2.24
3104 3237 8.723942 TTGATTAAGAGAGAGTAAGAATTGCC 57.276 34.615 0.00 0.00 0.00 4.52
3105 3238 7.851228 TGATTAAGAGAGAGTAAGAATTGCCA 58.149 34.615 0.00 0.00 0.00 4.92
3106 3239 7.984050 TGATTAAGAGAGAGTAAGAATTGCCAG 59.016 37.037 0.00 0.00 0.00 4.85
3107 3240 4.751767 AGAGAGAGTAAGAATTGCCAGG 57.248 45.455 0.00 0.00 0.00 4.45
3108 3241 4.100373 AGAGAGAGTAAGAATTGCCAGGT 58.900 43.478 0.00 0.00 0.00 4.00
3109 3242 4.534103 AGAGAGAGTAAGAATTGCCAGGTT 59.466 41.667 0.00 0.00 0.00 3.50
3110 3243 5.721960 AGAGAGAGTAAGAATTGCCAGGTTA 59.278 40.000 0.00 0.00 0.00 2.85
3111 3244 6.213600 AGAGAGAGTAAGAATTGCCAGGTTAA 59.786 38.462 0.00 0.00 0.00 2.01
3112 3245 6.963322 AGAGAGTAAGAATTGCCAGGTTAAT 58.037 36.000 0.00 0.00 0.00 1.40
3113 3246 7.406104 AGAGAGTAAGAATTGCCAGGTTAATT 58.594 34.615 4.12 4.12 0.00 1.40
3114 3247 7.890655 AGAGAGTAAGAATTGCCAGGTTAATTT 59.109 33.333 5.58 0.00 0.00 1.82
3115 3248 7.830739 AGAGTAAGAATTGCCAGGTTAATTTG 58.169 34.615 5.58 0.00 0.00 2.32
3116 3249 7.451566 AGAGTAAGAATTGCCAGGTTAATTTGT 59.548 33.333 5.58 1.47 0.00 2.83
3117 3250 7.378181 AGTAAGAATTGCCAGGTTAATTTGTG 58.622 34.615 5.58 0.00 0.00 3.33
3118 3251 6.418057 AAGAATTGCCAGGTTAATTTGTGA 57.582 33.333 5.58 0.00 0.00 3.58
3119 3252 6.418057 AGAATTGCCAGGTTAATTTGTGAA 57.582 33.333 5.58 0.00 0.00 3.18
3120 3253 6.825610 AGAATTGCCAGGTTAATTTGTGAAA 58.174 32.000 5.58 0.00 0.00 2.69
3121 3254 7.278875 AGAATTGCCAGGTTAATTTGTGAAAA 58.721 30.769 5.58 0.00 0.00 2.29
3122 3255 7.772757 AGAATTGCCAGGTTAATTTGTGAAAAA 59.227 29.630 5.58 0.00 0.00 1.94
3123 3256 6.670077 TTGCCAGGTTAATTTGTGAAAAAC 57.330 33.333 0.00 0.00 0.00 2.43
3124 3257 5.119694 TGCCAGGTTAATTTGTGAAAAACC 58.880 37.500 0.00 0.00 36.14 3.27
3125 3258 4.210328 GCCAGGTTAATTTGTGAAAAACCG 59.790 41.667 0.00 0.00 38.72 4.44
3126 3259 4.747605 CCAGGTTAATTTGTGAAAAACCGG 59.252 41.667 0.00 0.00 38.72 5.28
3127 3260 4.747605 CAGGTTAATTTGTGAAAAACCGGG 59.252 41.667 6.32 0.00 38.72 5.73
3128 3261 3.495377 GGTTAATTTGTGAAAAACCGGGC 59.505 43.478 6.32 0.00 30.18 6.13
3129 3262 4.373527 GTTAATTTGTGAAAAACCGGGCT 58.626 39.130 6.32 0.00 0.00 5.19
3130 3263 5.509332 GGTTAATTTGTGAAAAACCGGGCTA 60.509 40.000 6.32 0.00 30.18 3.93
3131 3264 4.674281 AATTTGTGAAAAACCGGGCTAA 57.326 36.364 6.32 0.00 0.00 3.09
3132 3265 4.674281 ATTTGTGAAAAACCGGGCTAAA 57.326 36.364 6.32 0.00 0.00 1.85
3133 3266 4.467198 TTTGTGAAAAACCGGGCTAAAA 57.533 36.364 6.32 0.00 0.00 1.52
3134 3267 3.439895 TGTGAAAAACCGGGCTAAAAC 57.560 42.857 6.32 0.00 0.00 2.43
3135 3268 2.101082 TGTGAAAAACCGGGCTAAAACC 59.899 45.455 6.32 0.00 0.00 3.27
3146 3279 3.602483 GGGCTAAAACCGATACAACTCA 58.398 45.455 0.00 0.00 0.00 3.41
3147 3280 4.004982 GGGCTAAAACCGATACAACTCAA 58.995 43.478 0.00 0.00 0.00 3.02
3148 3281 4.142752 GGGCTAAAACCGATACAACTCAAC 60.143 45.833 0.00 0.00 0.00 3.18
3149 3282 4.142752 GGCTAAAACCGATACAACTCAACC 60.143 45.833 0.00 0.00 0.00 3.77
3150 3283 4.142752 GCTAAAACCGATACAACTCAACCC 60.143 45.833 0.00 0.00 0.00 4.11
3151 3284 3.495434 AAACCGATACAACTCAACCCA 57.505 42.857 0.00 0.00 0.00 4.51
3152 3285 2.762535 ACCGATACAACTCAACCCAG 57.237 50.000 0.00 0.00 0.00 4.45
3153 3286 2.253610 ACCGATACAACTCAACCCAGA 58.746 47.619 0.00 0.00 0.00 3.86
3154 3287 2.635915 ACCGATACAACTCAACCCAGAA 59.364 45.455 0.00 0.00 0.00 3.02
3155 3288 3.071892 ACCGATACAACTCAACCCAGAAA 59.928 43.478 0.00 0.00 0.00 2.52
3156 3289 4.069304 CCGATACAACTCAACCCAGAAAA 58.931 43.478 0.00 0.00 0.00 2.29
3157 3290 4.700213 CCGATACAACTCAACCCAGAAAAT 59.300 41.667 0.00 0.00 0.00 1.82
3158 3291 5.391950 CCGATACAACTCAACCCAGAAAATG 60.392 44.000 0.00 0.00 0.00 2.32
3169 3302 0.881118 CAGAAAATGGACACCACCGG 59.119 55.000 0.00 0.00 35.80 5.28
3170 3303 0.893727 AGAAAATGGACACCACCGGC 60.894 55.000 0.00 0.00 35.80 6.13
3171 3304 1.873270 GAAAATGGACACCACCGGCC 61.873 60.000 0.00 0.00 35.80 6.13
3172 3305 2.648613 AAAATGGACACCACCGGCCA 62.649 55.000 0.00 0.00 35.80 5.36
3173 3306 2.648613 AAATGGACACCACCGGCCAA 62.649 55.000 0.00 0.00 35.80 4.52
3174 3307 2.439553 AATGGACACCACCGGCCAAT 62.440 55.000 0.00 0.00 35.80 3.16
3175 3308 2.750237 GGACACCACCGGCCAATC 60.750 66.667 0.00 0.00 0.00 2.67
3176 3309 2.351276 GACACCACCGGCCAATCT 59.649 61.111 0.00 0.00 0.00 2.40
3177 3310 2.034066 ACACCACCGGCCAATCTG 59.966 61.111 0.00 0.00 0.00 2.90
3203 3336 3.266964 CCAACAGATGGCCACACG 58.733 61.111 8.16 0.47 43.80 4.49
3204 3337 2.562912 CAACAGATGGCCACACGC 59.437 61.111 8.16 0.00 0.00 5.34
3205 3338 3.049674 AACAGATGGCCACACGCG 61.050 61.111 8.16 3.53 38.94 6.01
3221 3354 3.036084 CGCCAGCGAACGACAGTT 61.036 61.111 6.06 0.00 44.47 3.16
3222 3355 2.594962 CGCCAGCGAACGACAGTTT 61.595 57.895 6.06 0.00 41.34 2.66
3223 3356 1.204312 GCCAGCGAACGACAGTTTC 59.796 57.895 0.00 0.00 41.34 2.78
3236 3369 4.593597 GACAGTTTCGACTTTGACAACA 57.406 40.909 0.00 0.00 0.00 3.33
3237 3370 4.965062 GACAGTTTCGACTTTGACAACAA 58.035 39.130 0.00 0.00 0.00 2.83
3238 3371 5.560966 ACAGTTTCGACTTTGACAACAAT 57.439 34.783 0.00 0.00 35.85 2.71
3239 3372 5.569413 ACAGTTTCGACTTTGACAACAATC 58.431 37.500 0.00 0.00 35.85 2.67
3240 3373 5.354234 ACAGTTTCGACTTTGACAACAATCT 59.646 36.000 0.00 0.00 35.85 2.40
3241 3374 6.128007 ACAGTTTCGACTTTGACAACAATCTT 60.128 34.615 0.00 0.00 35.85 2.40
3242 3375 6.747280 CAGTTTCGACTTTGACAACAATCTTT 59.253 34.615 0.00 0.00 35.85 2.52
3243 3376 6.747280 AGTTTCGACTTTGACAACAATCTTTG 59.253 34.615 0.00 0.00 35.85 2.77
3244 3377 4.597079 TCGACTTTGACAACAATCTTTGC 58.403 39.130 0.00 0.00 35.85 3.68
3245 3378 3.418619 CGACTTTGACAACAATCTTTGCG 59.581 43.478 0.00 0.00 35.85 4.85
3246 3379 4.597079 GACTTTGACAACAATCTTTGCGA 58.403 39.130 0.00 0.00 35.85 5.10
3247 3380 4.601019 ACTTTGACAACAATCTTTGCGAG 58.399 39.130 0.00 0.00 35.85 5.03
3248 3381 3.624326 TTGACAACAATCTTTGCGAGG 57.376 42.857 0.00 0.00 0.00 4.63
3249 3382 1.879380 TGACAACAATCTTTGCGAGGG 59.121 47.619 0.00 0.00 0.00 4.30
3250 3383 2.151202 GACAACAATCTTTGCGAGGGA 58.849 47.619 0.00 0.00 0.00 4.20
3251 3384 2.552315 GACAACAATCTTTGCGAGGGAA 59.448 45.455 0.00 0.00 0.00 3.97
3252 3385 2.955660 ACAACAATCTTTGCGAGGGAAA 59.044 40.909 0.00 0.00 0.00 3.13
3253 3386 3.573967 ACAACAATCTTTGCGAGGGAAAT 59.426 39.130 0.00 0.00 0.00 2.17
3254 3387 4.764823 ACAACAATCTTTGCGAGGGAAATA 59.235 37.500 0.00 0.00 0.00 1.40
3255 3388 5.418840 ACAACAATCTTTGCGAGGGAAATAT 59.581 36.000 0.00 0.00 0.00 1.28
3256 3389 5.505173 ACAATCTTTGCGAGGGAAATATG 57.495 39.130 0.00 0.00 0.00 1.78
3257 3390 4.202050 ACAATCTTTGCGAGGGAAATATGC 60.202 41.667 0.00 0.00 0.00 3.14
3258 3391 2.997980 TCTTTGCGAGGGAAATATGCA 58.002 42.857 0.00 0.00 0.00 3.96
3259 3392 2.945008 TCTTTGCGAGGGAAATATGCAG 59.055 45.455 0.00 0.00 36.83 4.41
3260 3393 1.679139 TTGCGAGGGAAATATGCAGG 58.321 50.000 0.00 0.00 36.83 4.85
3261 3394 0.179020 TGCGAGGGAAATATGCAGGG 60.179 55.000 0.00 0.00 0.00 4.45
3262 3395 1.518903 GCGAGGGAAATATGCAGGGC 61.519 60.000 0.00 0.00 0.00 5.19
3263 3396 0.109342 CGAGGGAAATATGCAGGGCT 59.891 55.000 0.00 0.00 0.00 5.19
3264 3397 1.477558 CGAGGGAAATATGCAGGGCTT 60.478 52.381 0.00 0.00 0.00 4.35
3265 3398 1.959282 GAGGGAAATATGCAGGGCTTG 59.041 52.381 0.00 0.00 0.00 4.01
3305 3438 3.900892 CGACCGCCGAGTGCCTAT 61.901 66.667 0.00 0.00 41.76 2.57
3306 3439 2.027751 GACCGCCGAGTGCCTATC 59.972 66.667 0.00 0.00 36.24 2.08
3307 3440 2.758327 ACCGCCGAGTGCCTATCA 60.758 61.111 0.00 0.00 36.24 2.15
3308 3441 2.088674 GACCGCCGAGTGCCTATCAT 62.089 60.000 0.00 0.00 36.24 2.45
3309 3442 1.373497 CCGCCGAGTGCCTATCATC 60.373 63.158 0.00 0.00 36.24 2.92
3310 3443 1.363807 CGCCGAGTGCCTATCATCA 59.636 57.895 0.00 0.00 36.24 3.07
3311 3444 0.037882 CGCCGAGTGCCTATCATCAT 60.038 55.000 0.00 0.00 36.24 2.45
3312 3445 1.719600 GCCGAGTGCCTATCATCATC 58.280 55.000 0.00 0.00 0.00 2.92
3313 3446 1.001293 GCCGAGTGCCTATCATCATCA 59.999 52.381 0.00 0.00 0.00 3.07
3314 3447 2.681706 CCGAGTGCCTATCATCATCAC 58.318 52.381 0.00 0.00 0.00 3.06
3315 3448 2.611473 CCGAGTGCCTATCATCATCACC 60.611 54.545 0.00 0.00 0.00 4.02
3316 3449 2.036346 CGAGTGCCTATCATCATCACCA 59.964 50.000 0.00 0.00 0.00 4.17
3317 3450 3.397482 GAGTGCCTATCATCATCACCAC 58.603 50.000 0.00 0.00 0.00 4.16
3318 3451 3.044156 AGTGCCTATCATCATCACCACT 58.956 45.455 0.00 0.00 0.00 4.00
3319 3452 3.457380 AGTGCCTATCATCATCACCACTT 59.543 43.478 0.00 0.00 0.00 3.16
3320 3453 3.562973 GTGCCTATCATCATCACCACTTG 59.437 47.826 0.00 0.00 0.00 3.16
3321 3454 3.144506 GCCTATCATCATCACCACTTGG 58.855 50.000 0.00 0.00 42.17 3.61
3322 3455 3.181451 GCCTATCATCATCACCACTTGGA 60.181 47.826 1.14 0.00 38.94 3.53
3323 3456 4.384056 CCTATCATCATCACCACTTGGAC 58.616 47.826 1.14 0.00 38.94 4.02
3324 3457 4.141642 CCTATCATCATCACCACTTGGACA 60.142 45.833 1.14 0.00 38.94 4.02
3325 3458 3.057969 TCATCATCACCACTTGGACAC 57.942 47.619 1.14 0.00 38.94 3.67
3326 3459 2.371510 TCATCATCACCACTTGGACACA 59.628 45.455 1.14 0.00 38.94 3.72
3327 3460 3.148412 CATCATCACCACTTGGACACAA 58.852 45.455 1.14 0.00 38.94 3.33
3328 3461 3.507162 TCATCACCACTTGGACACAAT 57.493 42.857 1.14 0.00 38.94 2.71
3329 3462 3.411446 TCATCACCACTTGGACACAATC 58.589 45.455 1.14 0.00 38.94 2.67
3338 3471 4.693532 GACACAATCCACCGCAGA 57.306 55.556 0.00 0.00 0.00 4.26
3339 3472 3.159298 GACACAATCCACCGCAGAT 57.841 52.632 0.00 0.00 0.00 2.90
3340 3473 1.453155 GACACAATCCACCGCAGATT 58.547 50.000 0.00 0.00 0.00 2.40
3341 3474 1.398390 GACACAATCCACCGCAGATTC 59.602 52.381 0.00 0.00 0.00 2.52
3342 3475 0.374758 CACAATCCACCGCAGATTCG 59.625 55.000 0.00 0.00 0.00 3.34
3343 3476 0.249120 ACAATCCACCGCAGATTCGA 59.751 50.000 0.00 0.00 0.00 3.71
3344 3477 0.652592 CAATCCACCGCAGATTCGAC 59.347 55.000 0.00 0.00 0.00 4.20
3345 3478 0.537188 AATCCACCGCAGATTCGACT 59.463 50.000 0.00 0.00 0.00 4.18
3346 3479 0.103208 ATCCACCGCAGATTCGACTC 59.897 55.000 0.00 0.00 0.00 3.36
3347 3480 1.519455 CCACCGCAGATTCGACTCC 60.519 63.158 0.00 0.00 0.00 3.85
3348 3481 1.215382 CACCGCAGATTCGACTCCA 59.785 57.895 0.00 0.00 0.00 3.86
3349 3482 0.803768 CACCGCAGATTCGACTCCAG 60.804 60.000 0.00 0.00 0.00 3.86
3350 3483 0.965866 ACCGCAGATTCGACTCCAGA 60.966 55.000 0.00 0.00 0.00 3.86
3351 3484 0.173481 CCGCAGATTCGACTCCAGAA 59.827 55.000 0.00 0.00 0.00 3.02
3352 3485 1.272781 CGCAGATTCGACTCCAGAAC 58.727 55.000 0.00 0.00 0.00 3.01
3353 3486 1.402852 CGCAGATTCGACTCCAGAACA 60.403 52.381 0.00 0.00 0.00 3.18
3354 3487 2.688507 GCAGATTCGACTCCAGAACAA 58.311 47.619 0.00 0.00 0.00 2.83
3355 3488 2.413453 GCAGATTCGACTCCAGAACAAC 59.587 50.000 0.00 0.00 0.00 3.32
3356 3489 2.996621 CAGATTCGACTCCAGAACAACC 59.003 50.000 0.00 0.00 0.00 3.77
3357 3490 2.632996 AGATTCGACTCCAGAACAACCA 59.367 45.455 0.00 0.00 0.00 3.67
3358 3491 2.992124 TTCGACTCCAGAACAACCAA 57.008 45.000 0.00 0.00 0.00 3.67
3359 3492 2.526304 TCGACTCCAGAACAACCAAG 57.474 50.000 0.00 0.00 0.00 3.61
3360 3493 0.868406 CGACTCCAGAACAACCAAGC 59.132 55.000 0.00 0.00 0.00 4.01
3361 3494 1.810031 CGACTCCAGAACAACCAAGCA 60.810 52.381 0.00 0.00 0.00 3.91
3362 3495 2.297701 GACTCCAGAACAACCAAGCAA 58.702 47.619 0.00 0.00 0.00 3.91
3363 3496 2.024414 ACTCCAGAACAACCAAGCAAC 58.976 47.619 0.00 0.00 0.00 4.17
3364 3497 1.338020 CTCCAGAACAACCAAGCAACC 59.662 52.381 0.00 0.00 0.00 3.77
3365 3498 1.110442 CCAGAACAACCAAGCAACCA 58.890 50.000 0.00 0.00 0.00 3.67
3366 3499 1.202405 CCAGAACAACCAAGCAACCAC 60.202 52.381 0.00 0.00 0.00 4.16
3367 3500 0.738389 AGAACAACCAAGCAACCACG 59.262 50.000 0.00 0.00 0.00 4.94
3368 3501 0.248866 GAACAACCAAGCAACCACGG 60.249 55.000 0.00 0.00 0.00 4.94
3369 3502 0.681564 AACAACCAAGCAACCACGGA 60.682 50.000 0.00 0.00 0.00 4.69
3370 3503 0.681564 ACAACCAAGCAACCACGGAA 60.682 50.000 0.00 0.00 0.00 4.30
3371 3504 0.673437 CAACCAAGCAACCACGGAAT 59.327 50.000 0.00 0.00 0.00 3.01
3372 3505 1.883275 CAACCAAGCAACCACGGAATA 59.117 47.619 0.00 0.00 0.00 1.75
3373 3506 1.821216 ACCAAGCAACCACGGAATAG 58.179 50.000 0.00 0.00 0.00 1.73
3374 3507 0.451783 CCAAGCAACCACGGAATAGC 59.548 55.000 0.00 0.00 0.00 2.97
3375 3508 1.164411 CAAGCAACCACGGAATAGCA 58.836 50.000 0.00 0.00 0.00 3.49
3376 3509 1.135689 CAAGCAACCACGGAATAGCAC 60.136 52.381 0.00 0.00 0.00 4.40
3377 3510 0.036164 AGCAACCACGGAATAGCACA 59.964 50.000 0.00 0.00 0.00 4.57
3378 3511 1.094785 GCAACCACGGAATAGCACAT 58.905 50.000 0.00 0.00 0.00 3.21
3379 3512 1.064060 GCAACCACGGAATAGCACATC 59.936 52.381 0.00 0.00 0.00 3.06
3380 3513 1.327460 CAACCACGGAATAGCACATCG 59.673 52.381 0.00 0.00 0.00 3.84
3381 3514 0.179084 ACCACGGAATAGCACATCGG 60.179 55.000 0.00 0.00 0.00 4.18
3382 3515 0.104120 CCACGGAATAGCACATCGGA 59.896 55.000 0.00 0.00 0.00 4.55
3383 3516 1.209128 CACGGAATAGCACATCGGAC 58.791 55.000 0.00 0.00 0.00 4.79
3384 3517 0.821517 ACGGAATAGCACATCGGACA 59.178 50.000 0.00 0.00 0.00 4.02
3385 3518 1.209128 CGGAATAGCACATCGGACAC 58.791 55.000 0.00 0.00 0.00 3.67
3386 3519 1.209128 GGAATAGCACATCGGACACG 58.791 55.000 0.00 0.00 42.74 4.49
3387 3520 0.577269 GAATAGCACATCGGACACGC 59.423 55.000 0.00 0.00 40.69 5.34
3388 3521 0.810031 AATAGCACATCGGACACGCC 60.810 55.000 0.00 0.00 40.69 5.68
3397 3530 2.416260 GGACACGCCGGATAGACC 59.584 66.667 5.05 0.00 0.00 3.85
3409 3542 1.881324 GGATAGACCGACTACCAGAGC 59.119 57.143 0.00 0.00 33.62 4.09
3410 3543 1.881324 GATAGACCGACTACCAGAGCC 59.119 57.143 0.00 0.00 33.62 4.70
3411 3544 0.106819 TAGACCGACTACCAGAGCCC 60.107 60.000 0.00 0.00 0.00 5.19
3412 3545 2.754658 ACCGACTACCAGAGCCCG 60.755 66.667 0.00 0.00 0.00 6.13
3413 3546 2.439701 CCGACTACCAGAGCCCGA 60.440 66.667 0.00 0.00 0.00 5.14
3414 3547 2.482333 CCGACTACCAGAGCCCGAG 61.482 68.421 0.00 0.00 0.00 4.63
3415 3548 1.749638 CGACTACCAGAGCCCGAGT 60.750 63.158 0.00 0.00 0.00 4.18
3416 3549 1.716826 CGACTACCAGAGCCCGAGTC 61.717 65.000 0.00 0.00 34.48 3.36
3417 3550 1.716826 GACTACCAGAGCCCGAGTCG 61.717 65.000 5.29 5.29 0.00 4.18
3418 3551 3.127352 CTACCAGAGCCCGAGTCGC 62.127 68.421 7.12 0.00 0.00 5.19
3421 3554 4.838486 CAGAGCCCGAGTCGCGAC 62.838 72.222 31.30 31.30 44.57 5.19
3426 3559 3.136123 CCCGAGTCGCGACCCTAA 61.136 66.667 34.08 0.00 44.57 2.69
3427 3560 2.101770 CCGAGTCGCGACCCTAAC 59.898 66.667 34.08 18.91 44.57 2.34
3428 3561 2.404995 CCGAGTCGCGACCCTAACT 61.405 63.158 34.08 16.06 44.57 2.24
3429 3562 1.062206 CGAGTCGCGACCCTAACTC 59.938 63.158 34.08 22.36 44.57 3.01
3430 3563 1.642037 CGAGTCGCGACCCTAACTCA 61.642 60.000 34.08 0.00 44.57 3.41
3431 3564 0.739561 GAGTCGCGACCCTAACTCAT 59.260 55.000 34.08 13.67 38.39 2.90
3432 3565 0.739561 AGTCGCGACCCTAACTCATC 59.260 55.000 34.08 6.22 0.00 2.92
3433 3566 0.739561 GTCGCGACCCTAACTCATCT 59.260 55.000 28.61 0.00 0.00 2.90
3434 3567 1.134560 GTCGCGACCCTAACTCATCTT 59.865 52.381 28.61 0.00 0.00 2.40
3435 3568 1.134367 TCGCGACCCTAACTCATCTTG 59.866 52.381 3.71 0.00 0.00 3.02
3436 3569 1.802880 CGCGACCCTAACTCATCTTGG 60.803 57.143 0.00 0.00 0.00 3.61
3437 3570 1.941325 CGACCCTAACTCATCTTGGC 58.059 55.000 0.00 0.00 0.00 4.52
3438 3571 1.207089 CGACCCTAACTCATCTTGGCA 59.793 52.381 0.00 0.00 0.00 4.92
3439 3572 2.633488 GACCCTAACTCATCTTGGCAC 58.367 52.381 0.00 0.00 0.00 5.01
3440 3573 1.282157 ACCCTAACTCATCTTGGCACC 59.718 52.381 0.00 0.00 0.00 5.01
3441 3574 1.281867 CCCTAACTCATCTTGGCACCA 59.718 52.381 0.00 0.00 0.00 4.17
3442 3575 2.092212 CCCTAACTCATCTTGGCACCAT 60.092 50.000 0.00 0.00 0.00 3.55
3443 3576 3.209410 CCTAACTCATCTTGGCACCATC 58.791 50.000 0.00 0.00 0.00 3.51
3444 3577 2.885135 AACTCATCTTGGCACCATCA 57.115 45.000 0.00 0.00 0.00 3.07
3445 3578 3.377253 AACTCATCTTGGCACCATCAT 57.623 42.857 0.00 0.00 0.00 2.45
3446 3579 2.928334 ACTCATCTTGGCACCATCATC 58.072 47.619 0.00 0.00 0.00 2.92
3447 3580 2.240414 ACTCATCTTGGCACCATCATCA 59.760 45.455 0.00 0.00 0.00 3.07
3448 3581 3.117625 ACTCATCTTGGCACCATCATCAT 60.118 43.478 0.00 0.00 0.00 2.45
3449 3582 3.889538 CTCATCTTGGCACCATCATCATT 59.110 43.478 0.00 0.00 0.00 2.57
3450 3583 3.634910 TCATCTTGGCACCATCATCATTG 59.365 43.478 0.00 0.00 0.00 2.82
3451 3584 1.752498 TCTTGGCACCATCATCATTGC 59.248 47.619 0.00 0.00 0.00 3.56
3455 3588 2.676632 GCACCATCATCATTGCCAAA 57.323 45.000 0.00 0.00 0.00 3.28
3456 3589 2.273557 GCACCATCATCATTGCCAAAC 58.726 47.619 0.00 0.00 0.00 2.93
3457 3590 2.353903 GCACCATCATCATTGCCAAACA 60.354 45.455 0.00 0.00 0.00 2.83
3458 3591 3.517602 CACCATCATCATTGCCAAACAG 58.482 45.455 0.00 0.00 0.00 3.16
3459 3592 3.193903 CACCATCATCATTGCCAAACAGA 59.806 43.478 0.00 0.00 0.00 3.41
3460 3593 3.194116 ACCATCATCATTGCCAAACAGAC 59.806 43.478 0.00 0.00 0.00 3.51
3461 3594 3.193903 CCATCATCATTGCCAAACAGACA 59.806 43.478 0.00 0.00 0.00 3.41
3462 3595 4.142026 CCATCATCATTGCCAAACAGACAT 60.142 41.667 0.00 0.00 0.00 3.06
3463 3596 5.416083 CATCATCATTGCCAAACAGACATT 58.584 37.500 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.129502 CGCACATGGCTGGGTGAG 61.130 66.667 0.00 1.51 38.64 3.51
26 27 2.202878 TAACATGGCTCGCGGCTC 60.203 61.111 17.07 9.41 41.46 4.70
27 28 2.202932 CTAACATGGCTCGCGGCT 60.203 61.111 17.07 2.36 41.46 5.52
28 29 2.511600 ACTAACATGGCTCGCGGC 60.512 61.111 6.13 8.86 40.90 6.53
29 30 0.530650 ATGACTAACATGGCTCGCGG 60.531 55.000 6.13 0.00 37.87 6.46
58 62 3.290710 GACAAGCCCATATCCAACATGT 58.709 45.455 0.00 0.00 0.00 3.21
174 189 5.758784 CCTTCCGGTATAAGAAATCTGGTTC 59.241 44.000 0.00 0.00 0.00 3.62
177 192 4.347000 TCCCTTCCGGTATAAGAAATCTGG 59.653 45.833 0.00 0.00 0.00 3.86
191 206 0.912486 ATCTTGGAGTTCCCTTCCGG 59.088 55.000 0.00 0.00 37.54 5.14
212 231 6.294564 GGATCGTTTCTAGTATGGCAGTATGA 60.295 42.308 0.00 0.00 39.69 2.15
214 233 5.775701 AGGATCGTTTCTAGTATGGCAGTAT 59.224 40.000 0.00 0.00 0.00 2.12
216 235 3.961408 AGGATCGTTTCTAGTATGGCAGT 59.039 43.478 0.00 0.00 0.00 4.40
217 236 4.592485 AGGATCGTTTCTAGTATGGCAG 57.408 45.455 0.00 0.00 0.00 4.85
218 237 5.138276 AGTAGGATCGTTTCTAGTATGGCA 58.862 41.667 0.00 0.00 0.00 4.92
219 238 5.708877 AGTAGGATCGTTTCTAGTATGGC 57.291 43.478 0.00 0.00 0.00 4.40
220 239 6.264744 TCCAAGTAGGATCGTTTCTAGTATGG 59.735 42.308 0.00 9.44 43.07 2.74
301 320 7.255346 CGCCGAGGAAATTATTAAGGGTAAAAT 60.255 37.037 0.00 0.00 0.00 1.82
302 321 6.038492 CGCCGAGGAAATTATTAAGGGTAAAA 59.962 38.462 0.00 0.00 0.00 1.52
303 322 5.528320 CGCCGAGGAAATTATTAAGGGTAAA 59.472 40.000 0.00 0.00 0.00 2.01
323 342 3.441290 AGGTCTCGTTCCTCGCCG 61.441 66.667 0.00 0.00 39.67 6.46
334 353 1.227943 TGCTGGTTGTGCAGGTCTC 60.228 57.895 0.00 0.00 35.31 3.36
340 359 1.303561 GGGATCTGCTGGTTGTGCA 60.304 57.895 0.00 0.00 38.81 4.57
351 371 1.109920 ACGGACTGGATCGGGATCTG 61.110 60.000 8.45 5.05 37.92 2.90
363 383 2.088950 AACCATTAACGGACGGACTG 57.911 50.000 0.00 0.00 0.00 3.51
367 387 2.009051 GGGTAAACCATTAACGGACGG 58.991 52.381 0.00 0.00 39.85 4.79
368 388 2.697654 TGGGTAAACCATTAACGGACG 58.302 47.619 0.00 0.00 46.80 4.79
570 634 2.387772 CCGAGGAGAGGAGGAGGGA 61.388 68.421 0.00 0.00 0.00 4.20
571 635 2.197324 CCGAGGAGAGGAGGAGGG 59.803 72.222 0.00 0.00 0.00 4.30
704 795 6.534079 ACAGCTCACGAACTTTGTTATATACC 59.466 38.462 0.00 0.00 0.00 2.73
713 804 1.071239 CGTCACAGCTCACGAACTTTG 60.071 52.381 3.75 0.00 38.32 2.77
741 832 1.615262 GGCTAGGCTGGGATGGTTT 59.385 57.895 9.46 0.00 0.00 3.27
876 968 2.726691 CTTCGCTGTTGTACGGGCG 61.727 63.158 12.84 12.84 41.62 6.13
884 976 1.712081 CTGGATCGCTTCGCTGTTG 59.288 57.895 0.00 0.00 0.00 3.33
891 983 1.880340 CGTGGAGCTGGATCGCTTC 60.880 63.158 0.00 0.00 41.08 3.86
939 1044 5.223382 CCACCTAGTAGTAATGAATCAGCG 58.777 45.833 0.00 0.00 0.00 5.18
941 1046 6.015010 CCTCCCACCTAGTAGTAATGAATCAG 60.015 46.154 0.00 0.00 0.00 2.90
953 1058 1.229359 CGCTCCCTCCCACCTAGTA 59.771 63.158 0.00 0.00 0.00 1.82
954 1059 2.042843 CGCTCCCTCCCACCTAGT 60.043 66.667 0.00 0.00 0.00 2.57
955 1060 1.830408 CTCGCTCCCTCCCACCTAG 60.830 68.421 0.00 0.00 0.00 3.02
973 1078 1.883084 CGACGGTATGCTCCTTGCC 60.883 63.158 0.00 0.00 42.00 4.52
978 1083 2.025727 CGGTCGACGGTATGCTCC 59.974 66.667 14.48 0.00 39.42 4.70
980 1085 2.768492 GGTCGGTCGACGGTATGCT 61.768 63.158 20.84 0.00 45.41 3.79
988 1093 1.804326 CAACCATCGGTCGGTCGAC 60.804 63.158 14.33 14.33 42.21 4.20
1185 1290 1.218316 GGAGTTGAGGTAGGCCACG 59.782 63.158 5.01 0.00 37.19 4.94
2516 2630 1.868997 GACAAGGTGTGTCGCCATG 59.131 57.895 2.23 2.94 46.99 3.66
2551 2665 4.134563 CGAACCAAAGAAGGAAGAAAGGA 58.865 43.478 0.00 0.00 0.00 3.36
2552 2666 3.883489 ACGAACCAAAGAAGGAAGAAAGG 59.117 43.478 0.00 0.00 0.00 3.11
2553 2667 5.500645 AACGAACCAAAGAAGGAAGAAAG 57.499 39.130 0.00 0.00 0.00 2.62
2605 2719 1.788229 ACACCAACCCCTCCAAAAAG 58.212 50.000 0.00 0.00 0.00 2.27
2671 2799 8.744008 TCAAACTAGAGAAAGAACGATTACTG 57.256 34.615 0.00 0.00 0.00 2.74
2677 2805 9.716507 CAAATTTTCAAACTAGAGAAAGAACGA 57.283 29.630 0.00 0.00 35.41 3.85
2678 2806 8.958043 CCAAATTTTCAAACTAGAGAAAGAACG 58.042 33.333 0.00 0.00 35.41 3.95
2683 2811 7.782644 TCCCTCCAAATTTTCAAACTAGAGAAA 59.217 33.333 0.00 1.24 32.34 2.52
2688 2816 7.524717 TTCTCCCTCCAAATTTTCAAACTAG 57.475 36.000 0.00 0.00 0.00 2.57
2714 2842 0.178990 GACCACTGGACCTTGGCTTT 60.179 55.000 11.56 0.00 36.20 3.51
2763 2894 4.147449 TCTCATGCCGGCCTCACG 62.147 66.667 26.77 8.81 0.00 4.35
2764 2895 2.202987 CTCTCATGCCGGCCTCAC 60.203 66.667 26.77 0.00 0.00 3.51
2766 2897 4.925861 GCCTCTCATGCCGGCCTC 62.926 72.222 26.77 0.00 37.86 4.70
2810 2941 3.592059 TCTGACAAACTTATACACCGGC 58.408 45.455 0.00 0.00 0.00 6.13
2851 2982 8.542132 ACAAATTTTCAAAGAATCAATCGTGTG 58.458 29.630 0.00 0.00 0.00 3.82
2852 2983 8.542132 CACAAATTTTCAAAGAATCAATCGTGT 58.458 29.630 0.00 0.00 0.00 4.49
2872 3003 3.030291 TGCTTGAACAACTCCCACAAAT 58.970 40.909 0.00 0.00 0.00 2.32
3005 3138 1.405121 GGAGTCATCCACGGGTACAAC 60.405 57.143 0.00 0.00 45.87 3.32
3038 3171 7.631915 TTGCCTCGTTTAAAAAGAAATAAGC 57.368 32.000 0.00 0.00 0.00 3.09
3040 3173 9.804758 TCTTTTGCCTCGTTTAAAAAGAAATAA 57.195 25.926 12.83 0.00 42.58 1.40
3041 3174 9.240159 GTCTTTTGCCTCGTTTAAAAAGAAATA 57.760 29.630 15.25 0.00 45.31 1.40
3042 3175 7.979537 AGTCTTTTGCCTCGTTTAAAAAGAAAT 59.020 29.630 15.25 8.55 45.31 2.17
3043 3176 7.317390 AGTCTTTTGCCTCGTTTAAAAAGAAA 58.683 30.769 15.25 0.00 45.31 2.52
3044 3177 6.859017 AGTCTTTTGCCTCGTTTAAAAAGAA 58.141 32.000 15.25 3.98 45.31 2.52
3045 3178 6.445357 AGTCTTTTGCCTCGTTTAAAAAGA 57.555 33.333 11.82 11.82 43.03 2.52
3046 3179 6.507929 GCAAGTCTTTTGCCTCGTTTAAAAAG 60.508 38.462 0.54 0.00 39.74 2.27
3047 3180 5.289917 GCAAGTCTTTTGCCTCGTTTAAAAA 59.710 36.000 0.54 0.00 39.38 1.94
3048 3181 4.801516 GCAAGTCTTTTGCCTCGTTTAAAA 59.198 37.500 0.54 0.00 39.38 1.52
3049 3182 4.356289 GCAAGTCTTTTGCCTCGTTTAAA 58.644 39.130 0.54 0.00 39.38 1.52
3050 3183 3.959943 GCAAGTCTTTTGCCTCGTTTAA 58.040 40.909 0.54 0.00 39.38 1.52
3051 3184 3.619233 GCAAGTCTTTTGCCTCGTTTA 57.381 42.857 0.54 0.00 39.38 2.01
3052 3185 2.492019 GCAAGTCTTTTGCCTCGTTT 57.508 45.000 0.54 0.00 39.38 3.60
3059 3192 4.751098 TCAATGAAATGGCAAGTCTTTTGC 59.249 37.500 3.39 3.39 44.22 3.68
3060 3193 7.429636 AATCAATGAAATGGCAAGTCTTTTG 57.570 32.000 0.00 1.55 0.00 2.44
3061 3194 9.211485 CTTAATCAATGAAATGGCAAGTCTTTT 57.789 29.630 0.00 0.00 0.00 2.27
3062 3195 8.587608 TCTTAATCAATGAAATGGCAAGTCTTT 58.412 29.630 0.00 0.00 0.00 2.52
3063 3196 8.125978 TCTTAATCAATGAAATGGCAAGTCTT 57.874 30.769 0.00 0.00 0.00 3.01
3064 3197 7.613022 TCTCTTAATCAATGAAATGGCAAGTCT 59.387 33.333 0.00 0.00 0.00 3.24
3065 3198 7.765307 TCTCTTAATCAATGAAATGGCAAGTC 58.235 34.615 0.00 0.00 0.00 3.01
3066 3199 7.613022 TCTCTCTTAATCAATGAAATGGCAAGT 59.387 33.333 0.00 0.00 0.00 3.16
3067 3200 7.993101 TCTCTCTTAATCAATGAAATGGCAAG 58.007 34.615 0.00 0.00 0.00 4.01
3068 3201 7.613022 ACTCTCTCTTAATCAATGAAATGGCAA 59.387 33.333 0.00 0.00 0.00 4.52
3069 3202 7.114754 ACTCTCTCTTAATCAATGAAATGGCA 58.885 34.615 0.00 0.00 0.00 4.92
3070 3203 7.565323 ACTCTCTCTTAATCAATGAAATGGC 57.435 36.000 0.00 0.00 0.00 4.40
3078 3211 9.336171 GGCAATTCTTACTCTCTCTTAATCAAT 57.664 33.333 0.00 0.00 0.00 2.57
3079 3212 8.321353 TGGCAATTCTTACTCTCTCTTAATCAA 58.679 33.333 0.00 0.00 0.00 2.57
3080 3213 7.851228 TGGCAATTCTTACTCTCTCTTAATCA 58.149 34.615 0.00 0.00 0.00 2.57
3081 3214 7.440856 CCTGGCAATTCTTACTCTCTCTTAATC 59.559 40.741 0.00 0.00 0.00 1.75
3082 3215 7.092668 ACCTGGCAATTCTTACTCTCTCTTAAT 60.093 37.037 0.00 0.00 0.00 1.40
3083 3216 6.213600 ACCTGGCAATTCTTACTCTCTCTTAA 59.786 38.462 0.00 0.00 0.00 1.85
3084 3217 5.721960 ACCTGGCAATTCTTACTCTCTCTTA 59.278 40.000 0.00 0.00 0.00 2.10
3085 3218 4.534103 ACCTGGCAATTCTTACTCTCTCTT 59.466 41.667 0.00 0.00 0.00 2.85
3086 3219 4.100373 ACCTGGCAATTCTTACTCTCTCT 58.900 43.478 0.00 0.00 0.00 3.10
3087 3220 4.479786 ACCTGGCAATTCTTACTCTCTC 57.520 45.455 0.00 0.00 0.00 3.20
3088 3221 4.917906 AACCTGGCAATTCTTACTCTCT 57.082 40.909 0.00 0.00 0.00 3.10
3089 3222 7.631717 AATTAACCTGGCAATTCTTACTCTC 57.368 36.000 0.00 0.00 0.00 3.20
3090 3223 7.451566 ACAAATTAACCTGGCAATTCTTACTCT 59.548 33.333 7.17 0.00 0.00 3.24
3091 3224 7.542130 CACAAATTAACCTGGCAATTCTTACTC 59.458 37.037 7.17 0.00 0.00 2.59
3092 3225 7.232534 TCACAAATTAACCTGGCAATTCTTACT 59.767 33.333 7.17 0.00 0.00 2.24
3093 3226 7.375053 TCACAAATTAACCTGGCAATTCTTAC 58.625 34.615 7.17 0.00 0.00 2.34
3094 3227 7.531857 TCACAAATTAACCTGGCAATTCTTA 57.468 32.000 7.17 0.00 0.00 2.10
3095 3228 6.418057 TCACAAATTAACCTGGCAATTCTT 57.582 33.333 7.17 0.00 0.00 2.52
3096 3229 6.418057 TTCACAAATTAACCTGGCAATTCT 57.582 33.333 7.17 0.00 0.00 2.40
3097 3230 7.489574 TTTTCACAAATTAACCTGGCAATTC 57.510 32.000 7.17 0.00 0.00 2.17
3098 3231 7.201776 GGTTTTTCACAAATTAACCTGGCAATT 60.202 33.333 0.00 0.00 36.25 2.32
3099 3232 6.262049 GGTTTTTCACAAATTAACCTGGCAAT 59.738 34.615 0.00 0.00 36.25 3.56
3100 3233 5.586643 GGTTTTTCACAAATTAACCTGGCAA 59.413 36.000 0.00 0.00 36.25 4.52
3101 3234 5.119694 GGTTTTTCACAAATTAACCTGGCA 58.880 37.500 0.00 0.00 36.25 4.92
3102 3235 4.210328 CGGTTTTTCACAAATTAACCTGGC 59.790 41.667 0.00 0.00 36.86 4.85
3103 3236 4.747605 CCGGTTTTTCACAAATTAACCTGG 59.252 41.667 0.00 0.00 36.86 4.45
3104 3237 4.747605 CCCGGTTTTTCACAAATTAACCTG 59.252 41.667 0.00 0.00 36.86 4.00
3105 3238 4.741235 GCCCGGTTTTTCACAAATTAACCT 60.741 41.667 0.00 0.00 36.86 3.50
3106 3239 3.495377 GCCCGGTTTTTCACAAATTAACC 59.505 43.478 0.00 0.00 35.91 2.85
3107 3240 4.373527 AGCCCGGTTTTTCACAAATTAAC 58.626 39.130 0.00 0.00 0.00 2.01
3108 3241 4.674281 AGCCCGGTTTTTCACAAATTAA 57.326 36.364 0.00 0.00 0.00 1.40
3109 3242 5.786264 TTAGCCCGGTTTTTCACAAATTA 57.214 34.783 0.00 0.00 0.00 1.40
3110 3243 4.674281 TTAGCCCGGTTTTTCACAAATT 57.326 36.364 0.00 0.00 0.00 1.82
3111 3244 4.674281 TTTAGCCCGGTTTTTCACAAAT 57.326 36.364 0.00 0.00 0.00 2.32
3112 3245 4.182339 GTTTTAGCCCGGTTTTTCACAAA 58.818 39.130 0.00 0.00 0.00 2.83
3113 3246 3.430513 GGTTTTAGCCCGGTTTTTCACAA 60.431 43.478 0.00 0.00 0.00 3.33
3114 3247 2.101082 GGTTTTAGCCCGGTTTTTCACA 59.899 45.455 0.00 0.00 0.00 3.58
3115 3248 2.746269 GGTTTTAGCCCGGTTTTTCAC 58.254 47.619 0.00 0.00 0.00 3.18
3116 3249 1.337387 CGGTTTTAGCCCGGTTTTTCA 59.663 47.619 0.00 0.00 41.78 2.69
3117 3250 1.608109 TCGGTTTTAGCCCGGTTTTTC 59.392 47.619 0.00 0.00 45.51 2.29
3118 3251 1.689984 TCGGTTTTAGCCCGGTTTTT 58.310 45.000 0.00 0.00 45.51 1.94
3119 3252 1.913778 ATCGGTTTTAGCCCGGTTTT 58.086 45.000 0.00 0.00 45.51 2.43
3120 3253 2.290197 TGTATCGGTTTTAGCCCGGTTT 60.290 45.455 0.00 0.00 45.51 3.27
3121 3254 1.278699 TGTATCGGTTTTAGCCCGGTT 59.721 47.619 0.00 0.00 45.51 4.44
3122 3255 0.903942 TGTATCGGTTTTAGCCCGGT 59.096 50.000 0.00 0.00 45.51 5.28
3123 3256 1.667212 GTTGTATCGGTTTTAGCCCGG 59.333 52.381 0.00 0.00 45.51 5.73
3124 3257 2.606272 GAGTTGTATCGGTTTTAGCCCG 59.394 50.000 0.00 0.00 46.83 6.13
3125 3258 3.602483 TGAGTTGTATCGGTTTTAGCCC 58.398 45.455 0.00 0.00 0.00 5.19
3126 3259 4.142752 GGTTGAGTTGTATCGGTTTTAGCC 60.143 45.833 0.00 0.00 0.00 3.93
3127 3260 4.142752 GGGTTGAGTTGTATCGGTTTTAGC 60.143 45.833 0.00 0.00 0.00 3.09
3128 3261 4.998672 TGGGTTGAGTTGTATCGGTTTTAG 59.001 41.667 0.00 0.00 0.00 1.85
3129 3262 4.970711 TGGGTTGAGTTGTATCGGTTTTA 58.029 39.130 0.00 0.00 0.00 1.52
3130 3263 3.818773 CTGGGTTGAGTTGTATCGGTTTT 59.181 43.478 0.00 0.00 0.00 2.43
3131 3264 3.071892 TCTGGGTTGAGTTGTATCGGTTT 59.928 43.478 0.00 0.00 0.00 3.27
3132 3265 2.635915 TCTGGGTTGAGTTGTATCGGTT 59.364 45.455 0.00 0.00 0.00 4.44
3133 3266 2.253610 TCTGGGTTGAGTTGTATCGGT 58.746 47.619 0.00 0.00 0.00 4.69
3134 3267 3.328382 TTCTGGGTTGAGTTGTATCGG 57.672 47.619 0.00 0.00 0.00 4.18
3135 3268 5.391950 CCATTTTCTGGGTTGAGTTGTATCG 60.392 44.000 0.00 0.00 41.82 2.92
3136 3269 5.710099 TCCATTTTCTGGGTTGAGTTGTATC 59.290 40.000 0.00 0.00 45.98 2.24
3137 3270 5.476945 GTCCATTTTCTGGGTTGAGTTGTAT 59.523 40.000 0.00 0.00 45.98 2.29
3138 3271 4.825085 GTCCATTTTCTGGGTTGAGTTGTA 59.175 41.667 0.00 0.00 45.98 2.41
3139 3272 3.636764 GTCCATTTTCTGGGTTGAGTTGT 59.363 43.478 0.00 0.00 45.98 3.32
3140 3273 3.636300 TGTCCATTTTCTGGGTTGAGTTG 59.364 43.478 0.00 0.00 45.98 3.16
3141 3274 3.636764 GTGTCCATTTTCTGGGTTGAGTT 59.363 43.478 0.00 0.00 45.98 3.01
3142 3275 3.222603 GTGTCCATTTTCTGGGTTGAGT 58.777 45.455 0.00 0.00 45.98 3.41
3143 3276 2.558359 GGTGTCCATTTTCTGGGTTGAG 59.442 50.000 0.00 0.00 45.98 3.02
3144 3277 2.091610 TGGTGTCCATTTTCTGGGTTGA 60.092 45.455 0.00 0.00 45.98 3.18
3145 3278 2.035832 GTGGTGTCCATTTTCTGGGTTG 59.964 50.000 0.00 0.00 45.98 3.77
3146 3279 2.316108 GTGGTGTCCATTTTCTGGGTT 58.684 47.619 0.00 0.00 45.98 4.11
3147 3280 1.480498 GGTGGTGTCCATTTTCTGGGT 60.480 52.381 0.00 0.00 45.98 4.51
3148 3281 1.256812 GGTGGTGTCCATTTTCTGGG 58.743 55.000 0.00 0.00 45.98 4.45
3150 3283 0.881118 CCGGTGGTGTCCATTTTCTG 59.119 55.000 0.00 0.00 35.28 3.02
3151 3284 0.893727 GCCGGTGGTGTCCATTTTCT 60.894 55.000 1.90 0.00 35.28 2.52
3152 3285 1.584495 GCCGGTGGTGTCCATTTTC 59.416 57.895 1.90 0.00 35.28 2.29
3153 3286 1.906333 GGCCGGTGGTGTCCATTTT 60.906 57.895 1.90 0.00 35.28 1.82
3154 3287 2.282887 GGCCGGTGGTGTCCATTT 60.283 61.111 1.90 0.00 35.28 2.32
3155 3288 2.439553 ATTGGCCGGTGGTGTCCATT 62.440 55.000 1.90 0.00 35.28 3.16
3156 3289 2.837031 GATTGGCCGGTGGTGTCCAT 62.837 60.000 1.90 0.00 35.28 3.41
3157 3290 3.561120 GATTGGCCGGTGGTGTCCA 62.561 63.158 1.90 0.00 0.00 4.02
3158 3291 2.750237 GATTGGCCGGTGGTGTCC 60.750 66.667 1.90 0.00 0.00 4.02
3159 3292 2.040544 CAGATTGGCCGGTGGTGTC 61.041 63.158 1.90 0.00 0.00 3.67
3160 3293 2.034066 CAGATTGGCCGGTGGTGT 59.966 61.111 1.90 0.00 0.00 4.16
3161 3294 2.751436 CCAGATTGGCCGGTGGTG 60.751 66.667 1.90 0.00 0.00 4.17
3178 3311 1.514087 CCATCTGTTGGCATGTGGC 59.486 57.895 0.00 0.00 39.09 5.01
3187 3320 2.562912 GCGTGTGGCCATCTGTTG 59.437 61.111 9.72 0.00 34.80 3.33
3188 3321 3.049674 CGCGTGTGGCCATCTGTT 61.050 61.111 9.72 0.00 38.94 3.16
3204 3337 2.480426 GAAACTGTCGTTCGCTGGCG 62.480 60.000 8.80 8.80 41.35 5.69
3205 3338 1.204312 GAAACTGTCGTTCGCTGGC 59.796 57.895 0.00 0.00 31.66 4.85
3206 3339 1.487231 CGAAACTGTCGTTCGCTGG 59.513 57.895 2.15 0.00 45.09 4.85
3212 3345 9.418552 ATTGTTGTCAAAGTCGAAACTGTCGTT 62.419 37.037 0.00 0.00 42.55 3.85
3213 3346 8.045557 ATTGTTGTCAAAGTCGAAACTGTCGT 62.046 38.462 0.00 0.00 42.55 4.34
3214 3347 5.726688 ATTGTTGTCAAAGTCGAAACTGTCG 60.727 40.000 0.00 0.00 42.94 4.35
3215 3348 4.593597 TGTTGTCAAAGTCGAAACTGTC 57.406 40.909 0.00 0.00 35.36 3.51
3216 3349 5.354234 AGATTGTTGTCAAAGTCGAAACTGT 59.646 36.000 0.00 0.00 37.11 3.55
3217 3350 5.810525 AGATTGTTGTCAAAGTCGAAACTG 58.189 37.500 0.00 0.00 37.11 3.16
3218 3351 6.436843 AAGATTGTTGTCAAAGTCGAAACT 57.563 33.333 0.00 0.00 37.11 2.66
3219 3352 6.506357 GCAAAGATTGTTGTCAAAGTCGAAAC 60.506 38.462 0.00 0.00 37.11 2.78
3220 3353 5.514914 GCAAAGATTGTTGTCAAAGTCGAAA 59.485 36.000 0.00 0.00 37.11 3.46
3221 3354 5.034152 GCAAAGATTGTTGTCAAAGTCGAA 58.966 37.500 0.00 0.00 37.11 3.71
3222 3355 4.597079 GCAAAGATTGTTGTCAAAGTCGA 58.403 39.130 0.00 0.00 37.11 4.20
3223 3356 3.418619 CGCAAAGATTGTTGTCAAAGTCG 59.581 43.478 0.00 0.00 37.11 4.18
3224 3357 4.597079 TCGCAAAGATTGTTGTCAAAGTC 58.403 39.130 0.00 0.00 37.11 3.01
3225 3358 4.498009 CCTCGCAAAGATTGTTGTCAAAGT 60.498 41.667 0.00 0.00 37.11 2.66
3226 3359 3.976942 CCTCGCAAAGATTGTTGTCAAAG 59.023 43.478 0.00 0.00 37.11 2.77
3227 3360 3.243367 CCCTCGCAAAGATTGTTGTCAAA 60.243 43.478 0.00 0.00 37.11 2.69
3228 3361 2.293122 CCCTCGCAAAGATTGTTGTCAA 59.707 45.455 0.00 0.00 37.98 3.18
3229 3362 1.879380 CCCTCGCAAAGATTGTTGTCA 59.121 47.619 0.00 0.00 0.00 3.58
3230 3363 2.151202 TCCCTCGCAAAGATTGTTGTC 58.849 47.619 0.00 0.00 0.00 3.18
3231 3364 2.270352 TCCCTCGCAAAGATTGTTGT 57.730 45.000 0.00 0.00 0.00 3.32
3232 3365 3.641437 TTTCCCTCGCAAAGATTGTTG 57.359 42.857 0.00 0.00 0.00 3.33
3233 3366 5.679638 GCATATTTCCCTCGCAAAGATTGTT 60.680 40.000 0.00 0.00 0.00 2.83
3234 3367 4.202050 GCATATTTCCCTCGCAAAGATTGT 60.202 41.667 0.00 0.00 0.00 2.71
3235 3368 4.202040 TGCATATTTCCCTCGCAAAGATTG 60.202 41.667 0.00 0.00 0.00 2.67
3236 3369 3.953612 TGCATATTTCCCTCGCAAAGATT 59.046 39.130 0.00 0.00 0.00 2.40
3237 3370 3.554934 TGCATATTTCCCTCGCAAAGAT 58.445 40.909 0.00 0.00 0.00 2.40
3238 3371 2.945008 CTGCATATTTCCCTCGCAAAGA 59.055 45.455 0.00 0.00 31.10 2.52
3239 3372 2.033801 CCTGCATATTTCCCTCGCAAAG 59.966 50.000 0.00 0.00 31.10 2.77
3240 3373 2.023673 CCTGCATATTTCCCTCGCAAA 58.976 47.619 0.00 0.00 31.10 3.68
3241 3374 1.679139 CCTGCATATTTCCCTCGCAA 58.321 50.000 0.00 0.00 31.10 4.85
3242 3375 0.179020 CCCTGCATATTTCCCTCGCA 60.179 55.000 0.00 0.00 0.00 5.10
3243 3376 1.518903 GCCCTGCATATTTCCCTCGC 61.519 60.000 0.00 0.00 0.00 5.03
3244 3377 0.109342 AGCCCTGCATATTTCCCTCG 59.891 55.000 0.00 0.00 0.00 4.63
3245 3378 1.959282 CAAGCCCTGCATATTTCCCTC 59.041 52.381 0.00 0.00 0.00 4.30
3246 3379 2.077687 CAAGCCCTGCATATTTCCCT 57.922 50.000 0.00 0.00 0.00 4.20
3266 3399 4.831307 CGAAGGACTCGGTCGGCG 62.831 72.222 0.00 0.00 44.20 6.46
3288 3421 3.825833 GATAGGCACTCGGCGGTCG 62.826 68.421 7.21 0.00 46.16 4.79
3289 3422 2.027751 GATAGGCACTCGGCGGTC 59.972 66.667 7.21 0.00 46.16 4.79
3290 3423 2.088674 GATGATAGGCACTCGGCGGT 62.089 60.000 7.21 0.19 46.16 5.68
3291 3424 1.373497 GATGATAGGCACTCGGCGG 60.373 63.158 7.21 0.00 46.16 6.13
3292 3425 0.037882 ATGATGATAGGCACTCGGCG 60.038 55.000 0.00 0.00 46.16 6.46
3293 3426 1.001293 TGATGATGATAGGCACTCGGC 59.999 52.381 0.00 0.00 41.75 5.54
3294 3427 2.611473 GGTGATGATGATAGGCACTCGG 60.611 54.545 0.00 0.00 41.75 4.63
3295 3428 2.036346 TGGTGATGATGATAGGCACTCG 59.964 50.000 0.00 0.00 41.75 4.18
3296 3429 3.070734 AGTGGTGATGATGATAGGCACTC 59.929 47.826 0.00 0.00 41.75 3.51
3297 3430 3.044156 AGTGGTGATGATGATAGGCACT 58.956 45.455 0.00 0.00 46.37 4.40
3298 3431 3.482156 AGTGGTGATGATGATAGGCAC 57.518 47.619 0.00 0.00 0.00 5.01
3299 3432 3.434024 CCAAGTGGTGATGATGATAGGCA 60.434 47.826 0.00 0.00 0.00 4.75
3300 3433 3.144506 CCAAGTGGTGATGATGATAGGC 58.855 50.000 0.00 0.00 0.00 3.93
3301 3434 4.141642 TGTCCAAGTGGTGATGATGATAGG 60.142 45.833 0.00 0.00 36.34 2.57
3302 3435 4.813161 GTGTCCAAGTGGTGATGATGATAG 59.187 45.833 0.00 0.00 36.34 2.08
3303 3436 4.224818 TGTGTCCAAGTGGTGATGATGATA 59.775 41.667 0.00 0.00 36.34 2.15
3304 3437 3.009363 TGTGTCCAAGTGGTGATGATGAT 59.991 43.478 0.00 0.00 36.34 2.45
3305 3438 2.371510 TGTGTCCAAGTGGTGATGATGA 59.628 45.455 0.00 0.00 36.34 2.92
3306 3439 2.781923 TGTGTCCAAGTGGTGATGATG 58.218 47.619 0.00 0.00 36.34 3.07
3307 3440 3.507162 TTGTGTCCAAGTGGTGATGAT 57.493 42.857 0.00 0.00 36.34 2.45
3308 3441 3.411446 GATTGTGTCCAAGTGGTGATGA 58.589 45.455 0.00 0.00 33.17 2.92
3309 3442 2.489329 GGATTGTGTCCAAGTGGTGATG 59.511 50.000 0.00 0.00 46.96 3.07
3310 3443 2.795329 GGATTGTGTCCAAGTGGTGAT 58.205 47.619 0.00 0.00 46.96 3.06
3311 3444 2.270352 GGATTGTGTCCAAGTGGTGA 57.730 50.000 0.00 0.00 46.96 4.02
3321 3454 1.398390 GAATCTGCGGTGGATTGTGTC 59.602 52.381 0.00 0.00 34.09 3.67
3322 3455 1.453155 GAATCTGCGGTGGATTGTGT 58.547 50.000 0.00 0.00 34.09 3.72
3323 3456 0.374758 CGAATCTGCGGTGGATTGTG 59.625 55.000 0.00 0.00 34.09 3.33
3324 3457 0.249120 TCGAATCTGCGGTGGATTGT 59.751 50.000 0.00 0.00 34.09 2.71
3325 3458 0.652592 GTCGAATCTGCGGTGGATTG 59.347 55.000 0.00 0.00 34.09 2.67
3326 3459 0.537188 AGTCGAATCTGCGGTGGATT 59.463 50.000 0.00 0.00 36.29 3.01
3327 3460 0.103208 GAGTCGAATCTGCGGTGGAT 59.897 55.000 5.45 0.00 0.00 3.41
3328 3461 1.511305 GAGTCGAATCTGCGGTGGA 59.489 57.895 5.45 0.00 0.00 4.02
3329 3462 1.519455 GGAGTCGAATCTGCGGTGG 60.519 63.158 13.18 0.00 0.00 4.61
3330 3463 0.803768 CTGGAGTCGAATCTGCGGTG 60.804 60.000 13.18 0.00 0.00 4.94
3331 3464 0.965866 TCTGGAGTCGAATCTGCGGT 60.966 55.000 13.18 0.00 34.51 5.68
3332 3465 0.173481 TTCTGGAGTCGAATCTGCGG 59.827 55.000 13.18 4.95 34.24 5.69
3333 3466 1.272781 GTTCTGGAGTCGAATCTGCG 58.727 55.000 13.18 1.87 0.00 5.18
3334 3467 2.370281 TGTTCTGGAGTCGAATCTGC 57.630 50.000 13.18 0.00 0.00 4.26
3335 3468 2.996621 GGTTGTTCTGGAGTCGAATCTG 59.003 50.000 13.18 6.47 0.00 2.90
3336 3469 2.632996 TGGTTGTTCTGGAGTCGAATCT 59.367 45.455 13.18 0.00 0.00 2.40
3337 3470 3.040147 TGGTTGTTCTGGAGTCGAATC 57.960 47.619 3.82 3.82 0.00 2.52
3338 3471 3.403038 CTTGGTTGTTCTGGAGTCGAAT 58.597 45.455 0.00 0.00 0.00 3.34
3339 3472 2.833794 CTTGGTTGTTCTGGAGTCGAA 58.166 47.619 0.00 0.00 0.00 3.71
3340 3473 1.540363 GCTTGGTTGTTCTGGAGTCGA 60.540 52.381 0.00 0.00 0.00 4.20
3341 3474 0.868406 GCTTGGTTGTTCTGGAGTCG 59.132 55.000 0.00 0.00 0.00 4.18
3342 3475 1.967319 TGCTTGGTTGTTCTGGAGTC 58.033 50.000 0.00 0.00 0.00 3.36
3343 3476 2.024414 GTTGCTTGGTTGTTCTGGAGT 58.976 47.619 0.00 0.00 0.00 3.85
3344 3477 1.338020 GGTTGCTTGGTTGTTCTGGAG 59.662 52.381 0.00 0.00 0.00 3.86
3345 3478 1.341482 TGGTTGCTTGGTTGTTCTGGA 60.341 47.619 0.00 0.00 0.00 3.86
3346 3479 1.110442 TGGTTGCTTGGTTGTTCTGG 58.890 50.000 0.00 0.00 0.00 3.86
3347 3480 1.533756 CGTGGTTGCTTGGTTGTTCTG 60.534 52.381 0.00 0.00 0.00 3.02
3348 3481 0.738389 CGTGGTTGCTTGGTTGTTCT 59.262 50.000 0.00 0.00 0.00 3.01
3349 3482 0.248866 CCGTGGTTGCTTGGTTGTTC 60.249 55.000 0.00 0.00 0.00 3.18
3350 3483 0.681564 TCCGTGGTTGCTTGGTTGTT 60.682 50.000 0.00 0.00 0.00 2.83
3351 3484 0.681564 TTCCGTGGTTGCTTGGTTGT 60.682 50.000 0.00 0.00 0.00 3.32
3352 3485 0.673437 ATTCCGTGGTTGCTTGGTTG 59.327 50.000 0.00 0.00 0.00 3.77
3353 3486 2.159382 CTATTCCGTGGTTGCTTGGTT 58.841 47.619 0.00 0.00 0.00 3.67
3354 3487 1.821216 CTATTCCGTGGTTGCTTGGT 58.179 50.000 0.00 0.00 0.00 3.67
3355 3488 0.451783 GCTATTCCGTGGTTGCTTGG 59.548 55.000 0.00 0.00 0.00 3.61
3356 3489 1.135689 GTGCTATTCCGTGGTTGCTTG 60.136 52.381 0.00 0.00 0.00 4.01
3357 3490 1.165270 GTGCTATTCCGTGGTTGCTT 58.835 50.000 0.00 0.00 0.00 3.91
3358 3491 0.036164 TGTGCTATTCCGTGGTTGCT 59.964 50.000 0.00 0.00 0.00 3.91
3359 3492 1.064060 GATGTGCTATTCCGTGGTTGC 59.936 52.381 0.00 0.00 0.00 4.17
3360 3493 1.327460 CGATGTGCTATTCCGTGGTTG 59.673 52.381 0.00 0.00 0.00 3.77
3361 3494 1.651987 CGATGTGCTATTCCGTGGTT 58.348 50.000 0.00 0.00 0.00 3.67
3362 3495 0.179084 CCGATGTGCTATTCCGTGGT 60.179 55.000 0.00 0.00 0.00 4.16
3363 3496 0.104120 TCCGATGTGCTATTCCGTGG 59.896 55.000 0.00 0.00 0.00 4.94
3364 3497 1.209128 GTCCGATGTGCTATTCCGTG 58.791 55.000 0.00 0.00 0.00 4.94
3365 3498 0.821517 TGTCCGATGTGCTATTCCGT 59.178 50.000 0.00 0.00 0.00 4.69
3366 3499 1.209128 GTGTCCGATGTGCTATTCCG 58.791 55.000 0.00 0.00 0.00 4.30
3367 3500 1.209128 CGTGTCCGATGTGCTATTCC 58.791 55.000 0.00 0.00 35.63 3.01
3368 3501 0.577269 GCGTGTCCGATGTGCTATTC 59.423 55.000 0.00 0.00 35.63 1.75
3369 3502 0.810031 GGCGTGTCCGATGTGCTATT 60.810 55.000 0.00 0.00 35.63 1.73
3370 3503 1.227263 GGCGTGTCCGATGTGCTAT 60.227 57.895 0.00 0.00 35.63 2.97
3371 3504 2.183300 GGCGTGTCCGATGTGCTA 59.817 61.111 0.00 0.00 35.63 3.49
3380 3513 2.416260 GGTCTATCCGGCGTGTCC 59.584 66.667 6.01 0.00 0.00 4.02
3389 3522 1.881324 GCTCTGGTAGTCGGTCTATCC 59.119 57.143 0.00 0.00 0.00 2.59
3390 3523 1.881324 GGCTCTGGTAGTCGGTCTATC 59.119 57.143 0.00 0.00 0.00 2.08
3391 3524 1.479021 GGGCTCTGGTAGTCGGTCTAT 60.479 57.143 0.00 0.00 0.00 1.98
3392 3525 0.106819 GGGCTCTGGTAGTCGGTCTA 60.107 60.000 0.00 0.00 0.00 2.59
3393 3526 1.380112 GGGCTCTGGTAGTCGGTCT 60.380 63.158 0.00 0.00 0.00 3.85
3394 3527 2.772691 CGGGCTCTGGTAGTCGGTC 61.773 68.421 0.00 0.00 0.00 4.79
3395 3528 2.754658 CGGGCTCTGGTAGTCGGT 60.755 66.667 0.00 0.00 0.00 4.69
3396 3529 2.439701 TCGGGCTCTGGTAGTCGG 60.440 66.667 0.00 0.00 0.00 4.79
3397 3530 1.716826 GACTCGGGCTCTGGTAGTCG 61.717 65.000 0.00 0.00 0.00 4.18
3398 3531 1.716826 CGACTCGGGCTCTGGTAGTC 61.717 65.000 0.00 0.00 34.55 2.59
3399 3532 1.749638 CGACTCGGGCTCTGGTAGT 60.750 63.158 0.00 0.00 0.00 2.73
3400 3533 3.111939 CGACTCGGGCTCTGGTAG 58.888 66.667 0.00 0.00 0.00 3.18
3401 3534 3.138798 GCGACTCGGGCTCTGGTA 61.139 66.667 0.00 0.00 0.00 3.25
3404 3537 4.838486 GTCGCGACTCGGGCTCTG 62.838 72.222 31.12 0.00 39.60 3.35
3409 3542 3.136123 TTAGGGTCGCGACTCGGG 61.136 66.667 35.50 9.14 41.10 5.14
3410 3543 2.101770 GTTAGGGTCGCGACTCGG 59.898 66.667 35.50 0.00 36.76 4.63
3411 3544 1.062206 GAGTTAGGGTCGCGACTCG 59.938 63.158 35.50 0.00 36.76 4.18
3412 3545 0.739561 ATGAGTTAGGGTCGCGACTC 59.260 55.000 35.50 33.66 39.11 3.36
3413 3546 0.739561 GATGAGTTAGGGTCGCGACT 59.260 55.000 35.50 21.43 0.00 4.18
3414 3547 0.739561 AGATGAGTTAGGGTCGCGAC 59.260 55.000 30.67 30.67 0.00 5.19
3415 3548 1.134367 CAAGATGAGTTAGGGTCGCGA 59.866 52.381 3.71 3.71 0.00 5.87
3416 3549 1.560923 CAAGATGAGTTAGGGTCGCG 58.439 55.000 0.00 0.00 0.00 5.87
3417 3550 1.941325 CCAAGATGAGTTAGGGTCGC 58.059 55.000 0.00 0.00 0.00 5.19
3418 3551 1.207089 TGCCAAGATGAGTTAGGGTCG 59.793 52.381 0.00 0.00 0.00 4.79
3419 3552 2.633488 GTGCCAAGATGAGTTAGGGTC 58.367 52.381 0.00 0.00 0.00 4.46
3420 3553 1.282157 GGTGCCAAGATGAGTTAGGGT 59.718 52.381 0.00 0.00 0.00 4.34
3421 3554 1.281867 TGGTGCCAAGATGAGTTAGGG 59.718 52.381 0.00 0.00 0.00 3.53
3422 3555 2.787473 TGGTGCCAAGATGAGTTAGG 57.213 50.000 0.00 0.00 0.00 2.69
3423 3556 3.877559 TGATGGTGCCAAGATGAGTTAG 58.122 45.455 0.00 0.00 0.00 2.34
3424 3557 3.998913 TGATGGTGCCAAGATGAGTTA 57.001 42.857 0.00 0.00 0.00 2.24
3425 3558 2.885135 TGATGGTGCCAAGATGAGTT 57.115 45.000 0.00 0.00 0.00 3.01
3426 3559 2.240414 TGATGATGGTGCCAAGATGAGT 59.760 45.455 0.00 0.00 0.00 3.41
3427 3560 2.927028 TGATGATGGTGCCAAGATGAG 58.073 47.619 0.00 0.00 0.00 2.90
3428 3561 3.588210 ATGATGATGGTGCCAAGATGA 57.412 42.857 0.00 0.00 0.00 2.92
3429 3562 3.798889 GCAATGATGATGGTGCCAAGATG 60.799 47.826 0.00 0.00 0.00 2.90
3430 3563 2.364324 GCAATGATGATGGTGCCAAGAT 59.636 45.455 0.00 0.00 0.00 2.40
3431 3564 1.752498 GCAATGATGATGGTGCCAAGA 59.248 47.619 0.00 0.00 0.00 3.02
3432 3565 2.218953 GCAATGATGATGGTGCCAAG 57.781 50.000 0.00 0.00 0.00 3.61
3436 3569 2.273557 GTTTGGCAATGATGATGGTGC 58.726 47.619 0.00 0.00 36.24 5.01
3437 3570 3.193903 TCTGTTTGGCAATGATGATGGTG 59.806 43.478 0.00 0.00 0.00 4.17
3438 3571 3.194116 GTCTGTTTGGCAATGATGATGGT 59.806 43.478 0.00 0.00 0.00 3.55
3439 3572 3.193903 TGTCTGTTTGGCAATGATGATGG 59.806 43.478 0.00 0.00 0.00 3.51
3440 3573 4.443913 TGTCTGTTTGGCAATGATGATG 57.556 40.909 0.00 0.00 0.00 3.07
3441 3574 5.670792 AATGTCTGTTTGGCAATGATGAT 57.329 34.783 0.00 0.00 32.16 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.