Multiple sequence alignment - TraesCS3A01G361800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G361800 chr3A 100.000 2678 0 0 1 2678 609958443 609961120 0.000000e+00 4946.0
1 TraesCS3A01G361800 chr3A 84.293 191 26 4 1343 1530 740113599 740113410 1.640000e-42 183.0
2 TraesCS3A01G361800 chr3D 91.218 1355 64 22 631 1945 467318050 467319389 0.000000e+00 1792.0
3 TraesCS3A01G361800 chr3D 89.130 552 45 8 103 642 467291080 467291628 0.000000e+00 673.0
4 TraesCS3A01G361800 chr3D 89.130 184 11 3 2407 2588 467323254 467323430 1.250000e-53 220.0
5 TraesCS3A01G361800 chr3D 84.946 186 27 1 1346 1530 607923181 607923366 1.270000e-43 187.0
6 TraesCS3A01G361800 chr3B 90.150 1269 74 26 720 1945 621296859 621298119 0.000000e+00 1604.0
7 TraesCS3A01G361800 chr3B 86.824 592 66 6 54 635 621155267 621155856 0.000000e+00 651.0
8 TraesCS3A01G361800 chr3B 86.311 431 40 10 950 1373 621248349 621248767 4.070000e-123 451.0
9 TraesCS3A01G361800 chr3B 85.615 431 43 7 950 1373 621280570 621280988 4.090000e-118 435.0
10 TraesCS3A01G361800 chr3B 88.281 256 20 2 2188 2436 621299081 621299333 5.600000e-77 298.0
11 TraesCS3A01G361800 chr3B 83.505 194 28 4 1340 1530 817577750 817577942 7.620000e-41 178.0
12 TraesCS3A01G361800 chr1B 85.802 162 23 0 1370 1531 472634246 472634407 3.540000e-39 172.0
13 TraesCS3A01G361800 chr1B 94.286 70 0 2 2584 2651 452259661 452259594 1.310000e-18 104.0
14 TraesCS3A01G361800 chr1B 88.235 85 5 3 2589 2671 202997867 202997948 2.190000e-16 97.1
15 TraesCS3A01G361800 chr1D 85.185 162 24 0 1370 1531 350259500 350259339 1.650000e-37 167.0
16 TraesCS3A01G361800 chr1A 84.568 162 25 0 1370 1531 451282034 451281873 7.670000e-36 161.0
17 TraesCS3A01G361800 chr7D 94.286 70 0 3 2588 2654 471424332 471424264 1.310000e-18 104.0
18 TraesCS3A01G361800 chr7B 94.286 70 0 3 2584 2651 16627499 16627566 1.310000e-18 104.0
19 TraesCS3A01G361800 chr6D 89.873 79 4 3 2588 2664 359842505 359842429 6.100000e-17 99.0
20 TraesCS3A01G361800 chr4D 89.744 78 4 3 2589 2664 56609244 56609169 2.190000e-16 97.1
21 TraesCS3A01G361800 chr4B 89.873 79 3 4 2588 2664 591025804 591025879 2.190000e-16 97.1
22 TraesCS3A01G361800 chr2D 89.744 78 4 3 2589 2664 341345798 341345873 2.190000e-16 97.1
23 TraesCS3A01G361800 chr6B 87.209 86 6 3 2588 2671 39518582 39518664 2.840000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G361800 chr3A 609958443 609961120 2677 False 4946 4946 100.0000 1 2678 1 chr3A.!!$F1 2677
1 TraesCS3A01G361800 chr3D 467318050 467323430 5380 False 1006 1792 90.1740 631 2588 2 chr3D.!!$F3 1957
2 TraesCS3A01G361800 chr3D 467291080 467291628 548 False 673 673 89.1300 103 642 1 chr3D.!!$F1 539
3 TraesCS3A01G361800 chr3B 621296859 621299333 2474 False 951 1604 89.2155 720 2436 2 chr3B.!!$F5 1716
4 TraesCS3A01G361800 chr3B 621155267 621155856 589 False 651 651 86.8240 54 635 1 chr3B.!!$F1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 955 0.400594 CCGAGAAATATCCCACCCCC 59.599 60.0 0.0 0.0 0.0 5.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1863 1934 0.031857 TGTGCCTCAAATGTTTGCCG 59.968 50.0 0.66 0.0 38.05 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.782019 CTAGCCCTTAAACATTGCAACA 57.218 40.909 0.00 0.00 0.00 3.33
22 23 5.329035 CTAGCCCTTAAACATTGCAACAT 57.671 39.130 0.00 0.00 0.00 2.71
23 24 6.449635 CTAGCCCTTAAACATTGCAACATA 57.550 37.500 0.00 0.00 0.00 2.29
24 25 5.937975 AGCCCTTAAACATTGCAACATAT 57.062 34.783 0.00 0.00 0.00 1.78
25 26 6.298441 AGCCCTTAAACATTGCAACATATT 57.702 33.333 0.00 0.00 0.00 1.28
26 27 6.710278 AGCCCTTAAACATTGCAACATATTT 58.290 32.000 0.00 2.84 0.00 1.40
27 28 7.167535 AGCCCTTAAACATTGCAACATATTTT 58.832 30.769 0.00 0.00 0.00 1.82
28 29 8.317679 AGCCCTTAAACATTGCAACATATTTTA 58.682 29.630 0.00 0.00 0.00 1.52
29 30 8.387354 GCCCTTAAACATTGCAACATATTTTAC 58.613 33.333 0.00 0.00 0.00 2.01
30 31 8.591312 CCCTTAAACATTGCAACATATTTTACG 58.409 33.333 0.00 0.00 0.00 3.18
31 32 9.134734 CCTTAAACATTGCAACATATTTTACGT 57.865 29.630 0.00 0.00 0.00 3.57
59 60 5.333299 ACGTCATAGTAGTTACATGGCAA 57.667 39.130 0.00 0.00 0.00 4.52
72 73 4.354893 ACATGGCAATGTGTTGGATTTT 57.645 36.364 5.74 0.00 45.51 1.82
73 74 4.066490 ACATGGCAATGTGTTGGATTTTG 58.934 39.130 5.74 0.00 45.51 2.44
74 75 2.492012 TGGCAATGTGTTGGATTTTGC 58.508 42.857 0.00 0.00 41.40 3.68
75 76 2.158856 TGGCAATGTGTTGGATTTTGCA 60.159 40.909 8.05 0.00 43.35 4.08
76 77 2.223845 GGCAATGTGTTGGATTTTGCAC 59.776 45.455 8.05 0.00 43.35 4.57
95 96 4.035091 TGCACGAACCAAGCAATATCATAC 59.965 41.667 0.00 0.00 34.97 2.39
96 97 4.554723 GCACGAACCAAGCAATATCATACC 60.555 45.833 0.00 0.00 0.00 2.73
150 151 2.357154 CCCTAAAGGTTCCCATGGACAG 60.357 54.545 15.22 0.00 0.00 3.51
164 165 0.687354 GGACAGCCATACCCATCGAT 59.313 55.000 0.00 0.00 0.00 3.59
334 337 1.472878 CGTGAGGTTAGAGCTGCTGTA 59.527 52.381 7.01 4.15 0.00 2.74
385 388 2.260822 CAAAGGAGAGGGAGGAAGACA 58.739 52.381 0.00 0.00 0.00 3.41
410 413 3.011821 TCACAGTACTCAGGAGGGAAGAT 59.988 47.826 0.00 0.00 0.00 2.40
419 422 2.169352 CAGGAGGGAAGATGTCGAACAT 59.831 50.000 0.00 0.00 42.43 2.71
425 428 2.205074 GAAGATGTCGAACATGCGGAT 58.795 47.619 5.41 0.00 39.27 4.18
474 477 4.143333 CCGGTGAACTCCCGCGAT 62.143 66.667 8.23 0.00 44.13 4.58
526 529 4.473520 CGCCCGCCCATGAGTTCT 62.474 66.667 0.00 0.00 0.00 3.01
533 536 0.674895 GCCCATGAGTTCTTGTCGCT 60.675 55.000 0.00 0.00 0.00 4.93
546 549 4.074647 TCGCTCTCGACAGGACAA 57.925 55.556 0.00 0.00 40.21 3.18
552 555 2.029290 GCTCTCGACAGGACAAAACCTA 60.029 50.000 0.00 0.00 38.32 3.08
559 562 1.880027 CAGGACAAAACCTAGGTGTGC 59.120 52.381 17.14 14.55 38.32 4.57
562 565 0.536460 ACAAAACCTAGGTGTGCCGG 60.536 55.000 17.14 0.00 40.50 6.13
584 597 3.079578 ACGACACCGAGAGATACTTCAA 58.920 45.455 0.00 0.00 39.50 2.69
616 629 4.635765 TCTGCGGGTTGAATAGAGAAAATG 59.364 41.667 0.00 0.00 0.00 2.32
646 659 2.929398 GGTTTTGTGCCACAAGTTTGAG 59.071 45.455 10.58 0.00 39.53 3.02
651 664 0.817634 TGCCACAAGTTTGAGGACGG 60.818 55.000 11.77 0.28 40.79 4.79
661 674 4.436998 GAGGACGGCAGGGTCACG 62.437 72.222 0.00 0.00 38.70 4.35
675 688 6.072563 GGCAGGGTCACGTTTTATAACTTTTA 60.073 38.462 0.00 0.00 31.89 1.52
676 689 7.361894 GCAGGGTCACGTTTTATAACTTTTAA 58.638 34.615 0.00 0.00 31.89 1.52
705 718 4.661125 TCATCATAATTCGTGCAAGTTGC 58.339 39.130 21.17 21.17 45.29 4.17
716 729 0.595095 GCAAGTTGCAAGACTCAGGG 59.405 55.000 22.90 0.00 44.26 4.45
717 730 1.972872 CAAGTTGCAAGACTCAGGGT 58.027 50.000 0.00 0.00 0.00 4.34
718 731 1.605710 CAAGTTGCAAGACTCAGGGTG 59.394 52.381 0.00 0.00 0.00 4.61
723 736 0.595095 GCAAGACTCAGGGTGCTTTG 59.405 55.000 0.00 0.00 34.13 2.77
905 923 3.399305 ACATATCCAATCCCTTCTTCCCC 59.601 47.826 0.00 0.00 0.00 4.81
918 949 2.335933 TCTTCCCCCGAGAAATATCCC 58.664 52.381 0.00 0.00 0.00 3.85
924 955 0.400594 CCGAGAAATATCCCACCCCC 59.599 60.000 0.00 0.00 0.00 5.40
926 957 2.616524 CGAGAAATATCCCACCCCCTA 58.383 52.381 0.00 0.00 0.00 3.53
928 959 2.643304 GAGAAATATCCCACCCCCTACC 59.357 54.545 0.00 0.00 0.00 3.18
929 960 2.255649 AGAAATATCCCACCCCCTACCT 59.744 50.000 0.00 0.00 0.00 3.08
946 977 0.900182 CCTCTTTTTGAGCCACCCCC 60.900 60.000 0.00 0.00 41.35 5.40
948 979 2.915137 TTTTTGAGCCACCCCCGC 60.915 61.111 0.00 0.00 0.00 6.13
986 1045 1.351153 CGGGAAAGAGAAGCGAAGAC 58.649 55.000 0.00 0.00 0.00 3.01
1021 1080 1.750018 TTATCCCCTCGCGTCGTCA 60.750 57.895 5.77 0.00 0.00 4.35
1302 1361 2.835895 GAGGACGAGGAGGAGGGC 60.836 72.222 0.00 0.00 0.00 5.19
1320 1379 3.213402 GAGGGCGAGGACGAGGAG 61.213 72.222 0.00 0.00 42.66 3.69
1608 1679 2.887568 GTCCAGCGACCGCATCAG 60.888 66.667 16.97 3.55 44.88 2.90
1647 1718 0.995731 GCTACTGCGCGTATCCGTAC 60.996 60.000 8.43 0.00 36.15 3.67
1665 1736 2.457366 ACGTTTCCTACCAGAAGCTG 57.543 50.000 0.00 0.00 0.00 4.24
1704 1775 5.049818 GCAGTAAGCTCGATCAATGCTATTT 60.050 40.000 4.82 0.00 41.15 1.40
1706 1777 5.698545 AGTAAGCTCGATCAATGCTATTTCC 59.301 40.000 4.82 0.00 35.85 3.13
1713 1784 1.528309 AATGCTATTTCCCCGCGGG 60.528 57.895 37.99 37.99 46.11 6.13
1829 1900 3.545426 CCTGTCGTTTGAAAAACGGAGTC 60.545 47.826 21.13 11.96 45.00 3.36
1833 1904 2.870411 CGTTTGAAAAACGGAGTCTCCT 59.130 45.455 17.00 1.35 45.00 3.69
1851 1922 4.459337 TCTCCTATACATGTACTGCCATCG 59.541 45.833 7.96 0.00 0.00 3.84
1863 1934 4.225497 CCATCGAAAGACCCTGGC 57.775 61.111 0.00 0.00 46.97 4.85
1875 1946 1.374505 CCCTGGCGGCAAACATTTG 60.375 57.895 14.48 0.00 41.03 2.32
1908 1979 7.033185 GGTACAATCCATTTTCATACACCAAC 58.967 38.462 0.00 0.00 0.00 3.77
1909 1980 6.916360 ACAATCCATTTTCATACACCAACT 57.084 33.333 0.00 0.00 0.00 3.16
1910 1981 6.690530 ACAATCCATTTTCATACACCAACTG 58.309 36.000 0.00 0.00 0.00 3.16
1911 1982 6.493115 ACAATCCATTTTCATACACCAACTGA 59.507 34.615 0.00 0.00 0.00 3.41
2029 2144 5.957842 AAATCAAAAGCTTGTATGTCCGA 57.042 34.783 0.00 0.00 33.94 4.55
2034 2149 2.656560 AGCTTGTATGTCCGACAGAC 57.343 50.000 17.59 17.59 46.51 3.51
2043 2158 1.337821 GTCCGACAGACGTGTGATTC 58.662 55.000 20.80 6.47 36.88 2.52
2054 2169 3.064207 ACGTGTGATTCGTTGTTGCTAT 58.936 40.909 0.00 0.00 38.38 2.97
2064 2179 7.967854 TGATTCGTTGTTGCTATAATCAAAAGG 59.032 33.333 0.00 0.00 32.14 3.11
2069 2184 9.009327 CGTTGTTGCTATAATCAAAAGGTTATG 57.991 33.333 0.00 0.00 0.00 1.90
2070 2185 9.855021 GTTGTTGCTATAATCAAAAGGTTATGT 57.145 29.630 0.00 0.00 0.00 2.29
2071 2186 9.853555 TTGTTGCTATAATCAAAAGGTTATGTG 57.146 29.630 0.00 0.00 0.00 3.21
2072 2187 9.019656 TGTTGCTATAATCAAAAGGTTATGTGT 57.980 29.630 0.00 0.00 0.00 3.72
2086 2201 4.095782 GGTTATGTGTGTACATGGCGAAAT 59.904 41.667 0.00 0.00 46.63 2.17
2129 2248 1.139058 CGGTTGGGAGATACTGGAAGG 59.861 57.143 0.00 0.00 39.30 3.46
2164 2283 2.805099 CACCAGCTTCTCTTCAGTTCAC 59.195 50.000 0.00 0.00 0.00 3.18
2165 2284 2.224402 ACCAGCTTCTCTTCAGTTCACC 60.224 50.000 0.00 0.00 0.00 4.02
2172 2291 0.756294 TCTTCAGTTCACCGAGGCAA 59.244 50.000 0.00 0.00 0.00 4.52
2196 3005 2.903784 TCAGCTGCCTAGTTAGTTCCAA 59.096 45.455 9.47 0.00 0.00 3.53
2213 3022 9.667107 TTAGTTCCAATAACTAGTTCTGAATGG 57.333 33.333 12.39 13.62 34.58 3.16
2228 3037 3.565307 TGAATGGCTGTTGGAGTTTTCT 58.435 40.909 0.00 0.00 0.00 2.52
2229 3038 3.318839 TGAATGGCTGTTGGAGTTTTCTG 59.681 43.478 0.00 0.00 0.00 3.02
2234 3043 3.311966 GCTGTTGGAGTTTTCTGCATTC 58.688 45.455 0.00 0.00 46.93 2.67
2235 3044 3.243501 GCTGTTGGAGTTTTCTGCATTCA 60.244 43.478 0.00 0.00 46.93 2.57
2236 3045 4.560108 GCTGTTGGAGTTTTCTGCATTCAT 60.560 41.667 0.00 0.00 46.93 2.57
2245 3054 3.861276 TTCTGCATTCATCTTTGCTGG 57.139 42.857 0.00 0.00 39.60 4.85
2276 3093 0.881118 ATTGGGTACTTGCAGTTGCG 59.119 50.000 0.00 0.00 45.83 4.85
2362 3179 2.409378 CGATGTCAATTTTTGTGCAGGC 59.591 45.455 0.00 0.00 0.00 4.85
2377 3194 2.164219 TGCAGGCAAAATCGATTTCTCC 59.836 45.455 22.93 23.18 0.00 3.71
2397 6580 8.771920 TTCTCCTTACAAACATACATGTACTG 57.228 34.615 7.96 10.20 40.80 2.74
2403 6586 8.840833 TTACAAACATACATGTACTGTCACAT 57.159 30.769 7.96 4.44 40.80 3.21
2404 6587 9.930693 TTACAAACATACATGTACTGTCACATA 57.069 29.630 7.96 3.67 40.80 2.29
2405 6588 8.251750 ACAAACATACATGTACTGTCACATAC 57.748 34.615 7.96 0.00 40.80 2.39
2438 6621 6.247229 AGCATACAATACAAGGATGTACCA 57.753 37.500 0.00 0.00 44.47 3.25
2464 6647 5.411669 GTCGATTCTGTGGTTTGGAGTTTAT 59.588 40.000 0.00 0.00 0.00 1.40
2494 6678 7.962995 AATCTGAATCTAGTACTGTCTTCCA 57.037 36.000 5.39 0.00 0.00 3.53
2496 6680 6.722328 TCTGAATCTAGTACTGTCTTCCAGA 58.278 40.000 5.39 8.35 44.49 3.86
2497 6681 7.350382 TCTGAATCTAGTACTGTCTTCCAGAT 58.650 38.462 5.39 0.73 44.49 2.90
2498 6682 7.836685 TCTGAATCTAGTACTGTCTTCCAGATT 59.163 37.037 12.49 12.49 44.49 2.40
2499 6683 8.001881 TGAATCTAGTACTGTCTTCCAGATTC 57.998 38.462 23.52 23.52 44.49 2.52
2500 6684 7.962995 AATCTAGTACTGTCTTCCAGATTCA 57.037 36.000 5.39 0.00 44.49 2.57
2503 6687 5.350504 AGTACTGTCTTCCAGATTCATGG 57.649 43.478 0.00 0.00 44.49 3.66
2525 6709 2.656069 TAGCCAGGGCAGAACGTCC 61.656 63.158 13.63 0.00 44.88 4.79
2536 6720 0.602060 AGAACGTCCGACCTTCCTTC 59.398 55.000 6.64 0.00 0.00 3.46
2539 6723 1.915141 ACGTCCGACCTTCCTTCTTA 58.085 50.000 0.00 0.00 0.00 2.10
2588 6773 6.769341 ACTACTAAACTTTTGTCCCGATGTTT 59.231 34.615 0.00 0.00 0.00 2.83
2589 6774 6.459670 ACTAAACTTTTGTCCCGATGTTTT 57.540 33.333 0.00 0.00 0.00 2.43
2590 6775 6.869695 ACTAAACTTTTGTCCCGATGTTTTT 58.130 32.000 0.00 0.00 0.00 1.94
2610 6795 4.835284 TTTTTGGAGCAAAAGAGGGTTT 57.165 36.364 0.00 0.00 42.91 3.27
2611 6796 4.400529 TTTTGGAGCAAAAGAGGGTTTC 57.599 40.909 0.00 0.00 38.24 2.78
2612 6797 1.995376 TGGAGCAAAAGAGGGTTTCC 58.005 50.000 0.00 0.00 0.00 3.13
2613 6798 1.257743 GGAGCAAAAGAGGGTTTCCC 58.742 55.000 0.00 0.00 45.90 3.97
2626 6811 3.859061 GGTTTCCCCTCCGATTTCTAT 57.141 47.619 0.00 0.00 0.00 1.98
2627 6812 4.166246 GGTTTCCCCTCCGATTTCTATT 57.834 45.455 0.00 0.00 0.00 1.73
2628 6813 5.300411 GGTTTCCCCTCCGATTTCTATTA 57.700 43.478 0.00 0.00 0.00 0.98
2629 6814 5.687780 GGTTTCCCCTCCGATTTCTATTAA 58.312 41.667 0.00 0.00 0.00 1.40
2630 6815 6.124340 GGTTTCCCCTCCGATTTCTATTAAA 58.876 40.000 0.00 0.00 0.00 1.52
2631 6816 6.262496 GGTTTCCCCTCCGATTTCTATTAAAG 59.738 42.308 0.00 0.00 0.00 1.85
2632 6817 6.818281 TTCCCCTCCGATTTCTATTAAAGA 57.182 37.500 0.00 0.00 0.00 2.52
2633 6818 6.818281 TCCCCTCCGATTTCTATTAAAGAA 57.182 37.500 0.00 0.00 42.62 2.52
2645 6830 6.887626 TCTATTAAAGAAACCACCACAACC 57.112 37.500 0.00 0.00 0.00 3.77
2646 6831 6.366340 TCTATTAAAGAAACCACCACAACCA 58.634 36.000 0.00 0.00 0.00 3.67
2647 6832 5.941555 ATTAAAGAAACCACCACAACCAA 57.058 34.783 0.00 0.00 0.00 3.67
2648 6833 3.603158 AAAGAAACCACCACAACCAAC 57.397 42.857 0.00 0.00 0.00 3.77
2649 6834 2.223803 AGAAACCACCACAACCAACA 57.776 45.000 0.00 0.00 0.00 3.33
2650 6835 2.745968 AGAAACCACCACAACCAACAT 58.254 42.857 0.00 0.00 0.00 2.71
2651 6836 3.904717 AGAAACCACCACAACCAACATA 58.095 40.909 0.00 0.00 0.00 2.29
2652 6837 4.479158 AGAAACCACCACAACCAACATAT 58.521 39.130 0.00 0.00 0.00 1.78
2653 6838 4.898861 AGAAACCACCACAACCAACATATT 59.101 37.500 0.00 0.00 0.00 1.28
2654 6839 4.864704 AACCACCACAACCAACATATTC 57.135 40.909 0.00 0.00 0.00 1.75
2655 6840 2.817258 ACCACCACAACCAACATATTCG 59.183 45.455 0.00 0.00 0.00 3.34
2656 6841 3.078097 CCACCACAACCAACATATTCGA 58.922 45.455 0.00 0.00 0.00 3.71
2657 6842 3.126858 CCACCACAACCAACATATTCGAG 59.873 47.826 0.00 0.00 0.00 4.04
2658 6843 3.751175 CACCACAACCAACATATTCGAGT 59.249 43.478 0.00 0.00 0.00 4.18
2659 6844 4.932799 CACCACAACCAACATATTCGAGTA 59.067 41.667 0.00 0.00 0.00 2.59
2660 6845 4.933400 ACCACAACCAACATATTCGAGTAC 59.067 41.667 0.00 0.00 0.00 2.73
2661 6846 4.932799 CCACAACCAACATATTCGAGTACA 59.067 41.667 0.00 0.00 0.00 2.90
2662 6847 5.410132 CCACAACCAACATATTCGAGTACAA 59.590 40.000 0.00 0.00 0.00 2.41
2663 6848 6.304126 CACAACCAACATATTCGAGTACAAC 58.696 40.000 0.00 0.00 0.00 3.32
2664 6849 5.992829 ACAACCAACATATTCGAGTACAACA 59.007 36.000 0.00 0.00 0.00 3.33
2665 6850 6.653320 ACAACCAACATATTCGAGTACAACAT 59.347 34.615 0.00 0.00 0.00 2.71
2666 6851 6.903883 ACCAACATATTCGAGTACAACATC 57.096 37.500 0.00 0.00 0.00 3.06
2667 6852 6.403049 ACCAACATATTCGAGTACAACATCA 58.597 36.000 0.00 0.00 0.00 3.07
2668 6853 6.876789 ACCAACATATTCGAGTACAACATCAA 59.123 34.615 0.00 0.00 0.00 2.57
2669 6854 7.064609 ACCAACATATTCGAGTACAACATCAAG 59.935 37.037 0.00 0.00 0.00 3.02
2670 6855 6.589830 ACATATTCGAGTACAACATCAAGC 57.410 37.500 0.00 0.00 0.00 4.01
2671 6856 6.341316 ACATATTCGAGTACAACATCAAGCT 58.659 36.000 0.00 0.00 0.00 3.74
2672 6857 7.489160 ACATATTCGAGTACAACATCAAGCTA 58.511 34.615 0.00 0.00 0.00 3.32
2673 6858 7.435488 ACATATTCGAGTACAACATCAAGCTAC 59.565 37.037 0.00 0.00 0.00 3.58
2674 6859 4.776795 TCGAGTACAACATCAAGCTACA 57.223 40.909 0.00 0.00 0.00 2.74
2675 6860 5.128992 TCGAGTACAACATCAAGCTACAA 57.871 39.130 0.00 0.00 0.00 2.41
2676 6861 5.720202 TCGAGTACAACATCAAGCTACAAT 58.280 37.500 0.00 0.00 0.00 2.71
2677 6862 6.859017 TCGAGTACAACATCAAGCTACAATA 58.141 36.000 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.782019 TGTTGCAATGTTTAAGGGCTAG 57.218 40.909 0.59 0.00 0.00 3.42
1 2 7.416964 AATATGTTGCAATGTTTAAGGGCTA 57.583 32.000 0.59 0.00 0.00 3.93
2 3 5.937975 ATATGTTGCAATGTTTAAGGGCT 57.062 34.783 0.59 0.00 0.00 5.19
3 4 6.983474 AAATATGTTGCAATGTTTAAGGGC 57.017 33.333 0.59 0.00 0.00 5.19
4 5 8.591312 CGTAAAATATGTTGCAATGTTTAAGGG 58.409 33.333 0.59 0.00 0.00 3.95
5 6 9.134734 ACGTAAAATATGTTGCAATGTTTAAGG 57.865 29.630 0.59 2.83 0.00 2.69
31 32 9.467258 GCCATGTAACTACTATGACGTAATAAA 57.533 33.333 0.00 0.00 0.00 1.40
32 33 8.631797 TGCCATGTAACTACTATGACGTAATAA 58.368 33.333 0.00 0.00 0.00 1.40
33 34 8.168790 TGCCATGTAACTACTATGACGTAATA 57.831 34.615 0.00 0.00 0.00 0.98
34 35 7.046292 TGCCATGTAACTACTATGACGTAAT 57.954 36.000 0.00 0.00 0.00 1.89
35 36 6.453926 TGCCATGTAACTACTATGACGTAA 57.546 37.500 0.00 0.00 0.00 3.18
36 37 6.453926 TTGCCATGTAACTACTATGACGTA 57.546 37.500 0.00 0.00 0.00 3.57
37 38 4.994907 TGCCATGTAACTACTATGACGT 57.005 40.909 0.00 0.00 0.00 4.34
38 39 5.753438 ACATTGCCATGTAACTACTATGACG 59.247 40.000 0.69 0.00 42.24 4.35
39 40 6.538742 ACACATTGCCATGTAACTACTATGAC 59.461 38.462 2.64 0.00 42.14 3.06
40 41 6.649155 ACACATTGCCATGTAACTACTATGA 58.351 36.000 2.64 0.00 42.14 2.15
41 42 6.925610 ACACATTGCCATGTAACTACTATG 57.074 37.500 2.64 0.00 42.14 2.23
42 43 6.318648 CCAACACATTGCCATGTAACTACTAT 59.681 38.462 2.64 0.00 42.14 2.12
43 44 5.645929 CCAACACATTGCCATGTAACTACTA 59.354 40.000 2.64 0.00 42.14 1.82
44 45 4.458989 CCAACACATTGCCATGTAACTACT 59.541 41.667 2.64 0.00 42.14 2.57
45 46 4.457603 TCCAACACATTGCCATGTAACTAC 59.542 41.667 2.64 0.00 42.14 2.73
46 47 4.657013 TCCAACACATTGCCATGTAACTA 58.343 39.130 2.64 0.00 42.14 2.24
47 48 3.495331 TCCAACACATTGCCATGTAACT 58.505 40.909 2.64 0.00 42.14 2.24
48 49 3.932545 TCCAACACATTGCCATGTAAC 57.067 42.857 2.64 0.00 42.14 2.50
49 50 5.480642 AAATCCAACACATTGCCATGTAA 57.519 34.783 2.64 0.00 42.14 2.41
50 51 5.236282 CAAAATCCAACACATTGCCATGTA 58.764 37.500 2.64 0.00 42.14 2.29
51 52 4.066490 CAAAATCCAACACATTGCCATGT 58.934 39.130 0.00 0.00 45.18 3.21
52 53 3.120130 GCAAAATCCAACACATTGCCATG 60.120 43.478 0.00 0.00 40.25 3.66
59 60 3.380142 GTTCGTGCAAAATCCAACACAT 58.620 40.909 0.00 0.00 33.23 3.21
72 73 2.431454 TGATATTGCTTGGTTCGTGCA 58.569 42.857 0.00 0.00 34.69 4.57
73 74 3.698029 ATGATATTGCTTGGTTCGTGC 57.302 42.857 0.00 0.00 0.00 5.34
74 75 4.024048 GGGTATGATATTGCTTGGTTCGTG 60.024 45.833 0.00 0.00 0.00 4.35
75 76 4.134563 GGGTATGATATTGCTTGGTTCGT 58.865 43.478 0.00 0.00 0.00 3.85
76 77 4.133820 TGGGTATGATATTGCTTGGTTCG 58.866 43.478 0.00 0.00 0.00 3.95
95 96 0.179009 CTAGTGGGCATGGACATGGG 60.179 60.000 13.63 0.00 39.16 4.00
96 97 0.179009 CCTAGTGGGCATGGACATGG 60.179 60.000 13.63 0.00 39.16 3.66
285 288 9.176181 GTCACGTATCACAACATAAAACATTTT 57.824 29.630 0.00 0.00 0.00 1.82
286 289 8.564574 AGTCACGTATCACAACATAAAACATTT 58.435 29.630 0.00 0.00 0.00 2.32
287 290 8.094798 AGTCACGTATCACAACATAAAACATT 57.905 30.769 0.00 0.00 0.00 2.71
351 354 3.064248 CTTTGCTCTGCTCGTCGCG 62.064 63.158 0.00 0.00 43.27 5.87
367 370 2.158081 AGTTGTCTTCCTCCCTCTCCTT 60.158 50.000 0.00 0.00 0.00 3.36
385 388 2.110188 TCCCTCCTGAGTACTGTGAGTT 59.890 50.000 0.00 0.00 0.00 3.01
410 413 0.530288 TCTCATCCGCATGTTCGACA 59.470 50.000 0.00 0.00 0.00 4.35
419 422 1.466851 ATCCGCTCATCTCATCCGCA 61.467 55.000 0.00 0.00 0.00 5.69
425 428 1.752358 GCCTCCATCCGCTCATCTCA 61.752 60.000 0.00 0.00 0.00 3.27
518 521 1.813178 TCGAGAGCGACAAGAACTCAT 59.187 47.619 0.00 0.00 42.51 2.90
533 536 2.561419 CCTAGGTTTTGTCCTGTCGAGA 59.439 50.000 0.00 0.00 38.41 4.04
546 549 1.373812 GTCCGGCACACCTAGGTTT 59.626 57.895 13.15 2.20 0.00 3.27
562 565 2.676839 TGAAGTATCTCTCGGTGTCGTC 59.323 50.000 0.00 0.00 37.69 4.20
570 573 2.428890 AGCCCACTTGAAGTATCTCTCG 59.571 50.000 0.00 0.00 0.00 4.04
576 579 2.616510 GCAGACAGCCCACTTGAAGTAT 60.617 50.000 0.00 0.00 37.23 2.12
579 592 1.572085 CGCAGACAGCCCACTTGAAG 61.572 60.000 0.00 0.00 41.38 3.02
616 629 0.611062 GGCACAAAACCTCCCCTACC 60.611 60.000 0.00 0.00 0.00 3.18
646 659 3.819877 AAACGTGACCCTGCCGTCC 62.820 63.158 0.00 0.00 32.95 4.79
651 664 5.366829 AAAGTTATAAAACGTGACCCTGC 57.633 39.130 0.00 0.00 40.73 4.85
675 688 6.629128 TGCACGAATTATGATGATTTGGTTT 58.371 32.000 2.73 0.00 0.00 3.27
676 689 6.206395 TGCACGAATTATGATGATTTGGTT 57.794 33.333 2.73 0.00 0.00 3.67
705 718 2.260844 TCAAAGCACCCTGAGTCTTG 57.739 50.000 0.00 0.00 0.00 3.02
707 720 1.771255 AGTTCAAAGCACCCTGAGTCT 59.229 47.619 0.00 0.00 0.00 3.24
710 723 5.514274 TTTTTAGTTCAAAGCACCCTGAG 57.486 39.130 0.00 0.00 0.00 3.35
905 923 0.400594 GGGGGTGGGATATTTCTCGG 59.599 60.000 0.00 0.00 0.00 4.63
918 949 2.880167 GCTCAAAAAGAGGTAGGGGGTG 60.880 54.545 0.00 0.00 44.86 4.61
924 955 2.437413 GGGTGGCTCAAAAAGAGGTAG 58.563 52.381 0.00 0.00 44.86 3.18
926 957 0.178961 GGGGTGGCTCAAAAAGAGGT 60.179 55.000 0.00 0.00 44.86 3.85
929 960 1.228429 CGGGGGTGGCTCAAAAAGA 60.228 57.895 0.00 0.00 0.00 2.52
986 1045 5.882557 GGGGATAACATGGCATATACTCTTG 59.117 44.000 0.00 0.00 0.00 3.02
1258 1317 4.452733 CTCGTCGAACCTGGGGGC 62.453 72.222 0.00 0.00 35.63 5.80
1624 1695 4.944372 ATACGCGCAGTAGCCGCC 62.944 66.667 5.73 0.00 38.94 6.13
1647 1718 1.726853 CCAGCTTCTGGTAGGAAACG 58.273 55.000 4.74 0.00 45.82 3.60
1713 1784 1.644786 CGATTTCCAGTGCGGGGAAC 61.645 60.000 3.31 0.00 43.81 3.62
1829 1900 4.459337 TCGATGGCAGTACATGTATAGGAG 59.541 45.833 9.18 0.00 0.00 3.69
1833 1904 6.213677 GTCTTTCGATGGCAGTACATGTATA 58.786 40.000 9.18 0.00 0.00 1.47
1851 1922 1.901464 TTTGCCGCCAGGGTCTTTC 60.901 57.895 0.00 0.00 38.44 2.62
1863 1934 0.031857 TGTGCCTCAAATGTTTGCCG 59.968 50.000 0.66 0.00 38.05 5.69
1875 1946 2.717639 ATGGATTGTACCTGTGCCTC 57.282 50.000 0.00 0.00 0.00 4.70
1908 1979 3.077359 CAGCTTTAGGTTCTGGGTTCAG 58.923 50.000 0.00 0.00 42.21 3.02
1909 1980 2.814097 GCAGCTTTAGGTTCTGGGTTCA 60.814 50.000 0.00 0.00 0.00 3.18
1910 1981 1.813178 GCAGCTTTAGGTTCTGGGTTC 59.187 52.381 0.00 0.00 0.00 3.62
1911 1982 1.547901 GGCAGCTTTAGGTTCTGGGTT 60.548 52.381 0.00 0.00 0.00 4.11
1975 2084 4.508052 CAAAGAACGAAGCAAAAACATGC 58.492 39.130 0.00 0.00 46.78 4.06
1976 2085 4.566360 ACCAAAGAACGAAGCAAAAACATG 59.434 37.500 0.00 0.00 0.00 3.21
1977 2086 4.754322 ACCAAAGAACGAAGCAAAAACAT 58.246 34.783 0.00 0.00 0.00 2.71
1981 2090 4.181309 ACAACCAAAGAACGAAGCAAAA 57.819 36.364 0.00 0.00 0.00 2.44
1982 2091 3.859411 ACAACCAAAGAACGAAGCAAA 57.141 38.095 0.00 0.00 0.00 3.68
2013 2128 3.326747 GTCTGTCGGACATACAAGCTTT 58.673 45.455 18.42 0.00 43.94 3.51
2014 2129 2.671351 CGTCTGTCGGACATACAAGCTT 60.671 50.000 21.67 0.00 44.70 3.74
2015 2130 1.135373 CGTCTGTCGGACATACAAGCT 60.135 52.381 21.67 0.00 44.70 3.74
2027 2142 1.122501 CAACGAATCACACGTCTGTCG 59.877 52.381 2.99 2.99 43.16 4.35
2029 2144 2.218953 ACAACGAATCACACGTCTGT 57.781 45.000 0.00 0.00 43.16 3.41
2034 2149 3.722555 ATAGCAACAACGAATCACACG 57.277 42.857 0.00 0.00 0.00 4.49
2043 2158 9.009327 CATAACCTTTTGATTATAGCAACAACG 57.991 33.333 0.00 0.00 0.00 4.10
2054 2169 8.735315 CCATGTACACACATAACCTTTTGATTA 58.265 33.333 0.00 0.00 43.73 1.75
2064 2179 4.671880 TTTCGCCATGTACACACATAAC 57.328 40.909 0.00 0.00 43.73 1.89
2069 2184 4.148000 CACAAAATTTCGCCATGTACACAC 59.852 41.667 0.00 0.00 0.00 3.82
2070 2185 4.294232 CACAAAATTTCGCCATGTACACA 58.706 39.130 0.00 0.00 0.00 3.72
2071 2186 3.121113 GCACAAAATTTCGCCATGTACAC 59.879 43.478 0.00 0.00 0.00 2.90
2072 2187 3.312828 GCACAAAATTTCGCCATGTACA 58.687 40.909 0.00 0.00 0.00 2.90
2086 2201 5.861251 CGCATTACTGAAAATAGGCACAAAA 59.139 36.000 0.00 0.00 0.00 2.44
2096 2214 3.426615 TCCCAACCGCATTACTGAAAAT 58.573 40.909 0.00 0.00 0.00 1.82
2129 2248 1.604278 GCTGGTGTGGTCTTCAAGTTC 59.396 52.381 0.00 0.00 0.00 3.01
2135 2254 1.346068 AGAGAAGCTGGTGTGGTCTTC 59.654 52.381 0.00 0.00 36.19 2.87
2137 2256 1.346068 GAAGAGAAGCTGGTGTGGTCT 59.654 52.381 0.00 0.00 0.00 3.85
2164 2283 2.684843 GCAGCTGAAGTTGCCTCGG 61.685 63.158 20.43 0.00 44.87 4.63
2165 2284 2.866028 GCAGCTGAAGTTGCCTCG 59.134 61.111 20.43 0.00 44.87 4.63
2172 2291 3.055747 GGAACTAACTAGGCAGCTGAAGT 60.056 47.826 20.43 14.18 0.00 3.01
2196 3005 5.882557 CCAACAGCCATTCAGAACTAGTTAT 59.117 40.000 8.42 1.58 0.00 1.89
2213 3022 3.243501 TGAATGCAGAAAACTCCAACAGC 60.244 43.478 0.00 0.00 0.00 4.40
2228 3037 2.751259 GACTCCAGCAAAGATGAATGCA 59.249 45.455 0.00 0.00 44.95 3.96
2229 3038 2.223203 CGACTCCAGCAAAGATGAATGC 60.223 50.000 0.00 0.00 42.87 3.56
2234 3043 3.181503 CCAAATCGACTCCAGCAAAGATG 60.182 47.826 0.00 0.00 0.00 2.90
2235 3044 3.012518 CCAAATCGACTCCAGCAAAGAT 58.987 45.455 0.00 0.00 0.00 2.40
2236 3045 2.038426 TCCAAATCGACTCCAGCAAAGA 59.962 45.455 0.00 0.00 0.00 2.52
2245 3054 4.138487 AGTACCCAATCCAAATCGACTC 57.862 45.455 0.00 0.00 0.00 3.36
2276 3093 4.488879 GAGATCAAATTGGTGCAAAGGTC 58.511 43.478 0.00 0.00 0.00 3.85
2310 3127 5.479375 AGCATCAGTTCCTCATCAAAACAAT 59.521 36.000 0.00 0.00 0.00 2.71
2341 3158 2.409378 GCCTGCACAAAAATTGACATCG 59.591 45.455 0.00 0.00 0.00 3.84
2352 3169 3.383620 AATCGATTTTGCCTGCACAAA 57.616 38.095 4.39 0.00 37.74 2.83
2357 3174 2.424956 AGGAGAAATCGATTTTGCCTGC 59.575 45.455 29.46 23.52 34.47 4.85
2362 3179 8.970691 ATGTTTGTAAGGAGAAATCGATTTTG 57.029 30.769 23.49 0.00 0.00 2.44
2377 3194 8.305441 TGTGACAGTACATGTATGTTTGTAAG 57.695 34.615 9.18 0.00 44.17 2.34
2438 6621 3.244561 ACTCCAAACCACAGAATCGACAT 60.245 43.478 0.00 0.00 0.00 3.06
2464 6647 9.688091 AGACAGTACTAGATTCAGATTTAGTCA 57.312 33.333 0.00 0.00 35.49 3.41
2494 6678 2.053244 CCTGGCTACCTCCATGAATCT 58.947 52.381 0.00 0.00 35.22 2.40
2495 6679 1.072965 CCCTGGCTACCTCCATGAATC 59.927 57.143 0.00 0.00 35.22 2.52
2496 6680 1.143813 CCCTGGCTACCTCCATGAAT 58.856 55.000 0.00 0.00 35.22 2.57
2497 6681 1.635817 GCCCTGGCTACCTCCATGAA 61.636 60.000 0.00 0.00 38.26 2.57
2498 6682 2.072487 GCCCTGGCTACCTCCATGA 61.072 63.158 0.00 0.00 38.26 3.07
2499 6683 2.335092 CTGCCCTGGCTACCTCCATG 62.335 65.000 9.97 0.00 42.51 3.66
2500 6684 2.042762 TGCCCTGGCTACCTCCAT 59.957 61.111 9.97 0.00 42.51 3.41
2503 6687 1.222113 GTTCTGCCCTGGCTACCTC 59.778 63.158 9.97 0.00 42.51 3.85
2525 6709 6.651225 AGAACAAAAGATAAGAAGGAAGGTCG 59.349 38.462 0.00 0.00 0.00 4.79
2536 6720 8.077836 ACTGAACTTCGAGAACAAAAGATAAG 57.922 34.615 0.00 0.00 0.00 1.73
2539 6723 6.927294 AACTGAACTTCGAGAACAAAAGAT 57.073 33.333 0.00 0.00 0.00 2.40
2589 6774 4.383661 GGAAACCCTCTTTTGCTCCAAAAA 60.384 41.667 4.88 0.00 41.77 1.94
2590 6775 3.133901 GGAAACCCTCTTTTGCTCCAAAA 59.866 43.478 3.46 3.46 40.41 2.44
2591 6776 2.698274 GGAAACCCTCTTTTGCTCCAAA 59.302 45.455 0.00 0.00 0.00 3.28
2592 6777 2.316108 GGAAACCCTCTTTTGCTCCAA 58.684 47.619 0.00 0.00 0.00 3.53
2593 6778 1.995376 GGAAACCCTCTTTTGCTCCA 58.005 50.000 0.00 0.00 0.00 3.86
2607 6792 7.052248 TCTTTAATAGAAATCGGAGGGGAAAC 58.948 38.462 0.00 0.00 0.00 2.78
2608 6793 7.202972 TCTTTAATAGAAATCGGAGGGGAAA 57.797 36.000 0.00 0.00 0.00 3.13
2609 6794 6.818281 TCTTTAATAGAAATCGGAGGGGAA 57.182 37.500 0.00 0.00 0.00 3.97
2610 6795 6.818281 TTCTTTAATAGAAATCGGAGGGGA 57.182 37.500 0.00 0.00 39.90 4.81
2621 6806 6.834451 TGGTTGTGGTGGTTTCTTTAATAGAA 59.166 34.615 0.00 0.00 41.11 2.10
2622 6807 6.366340 TGGTTGTGGTGGTTTCTTTAATAGA 58.634 36.000 0.00 0.00 0.00 1.98
2623 6808 6.642707 TGGTTGTGGTGGTTTCTTTAATAG 57.357 37.500 0.00 0.00 0.00 1.73
2624 6809 6.380274 TGTTGGTTGTGGTGGTTTCTTTAATA 59.620 34.615 0.00 0.00 0.00 0.98
2625 6810 5.187967 TGTTGGTTGTGGTGGTTTCTTTAAT 59.812 36.000 0.00 0.00 0.00 1.40
2626 6811 4.527038 TGTTGGTTGTGGTGGTTTCTTTAA 59.473 37.500 0.00 0.00 0.00 1.52
2627 6812 4.087182 TGTTGGTTGTGGTGGTTTCTTTA 58.913 39.130 0.00 0.00 0.00 1.85
2628 6813 2.900546 TGTTGGTTGTGGTGGTTTCTTT 59.099 40.909 0.00 0.00 0.00 2.52
2629 6814 2.530701 TGTTGGTTGTGGTGGTTTCTT 58.469 42.857 0.00 0.00 0.00 2.52
2630 6815 2.223803 TGTTGGTTGTGGTGGTTTCT 57.776 45.000 0.00 0.00 0.00 2.52
2631 6816 4.864704 ATATGTTGGTTGTGGTGGTTTC 57.135 40.909 0.00 0.00 0.00 2.78
2632 6817 4.261825 CGAATATGTTGGTTGTGGTGGTTT 60.262 41.667 0.00 0.00 0.00 3.27
2633 6818 3.254657 CGAATATGTTGGTTGTGGTGGTT 59.745 43.478 0.00 0.00 0.00 3.67
2634 6819 2.817258 CGAATATGTTGGTTGTGGTGGT 59.183 45.455 0.00 0.00 0.00 4.16
2635 6820 3.078097 TCGAATATGTTGGTTGTGGTGG 58.922 45.455 0.00 0.00 0.00 4.61
2636 6821 3.751175 ACTCGAATATGTTGGTTGTGGTG 59.249 43.478 0.00 0.00 0.00 4.17
2637 6822 4.015872 ACTCGAATATGTTGGTTGTGGT 57.984 40.909 0.00 0.00 0.00 4.16
2638 6823 4.932799 TGTACTCGAATATGTTGGTTGTGG 59.067 41.667 0.00 0.00 0.00 4.17
2639 6824 6.073494 TGTTGTACTCGAATATGTTGGTTGTG 60.073 38.462 0.00 0.00 0.00 3.33
2640 6825 5.992829 TGTTGTACTCGAATATGTTGGTTGT 59.007 36.000 0.00 0.00 0.00 3.32
2641 6826 6.474819 TGTTGTACTCGAATATGTTGGTTG 57.525 37.500 0.00 0.00 0.00 3.77
2642 6827 6.876789 TGATGTTGTACTCGAATATGTTGGTT 59.123 34.615 0.00 0.00 0.00 3.67
2643 6828 6.403049 TGATGTTGTACTCGAATATGTTGGT 58.597 36.000 0.00 0.00 0.00 3.67
2644 6829 6.902224 TGATGTTGTACTCGAATATGTTGG 57.098 37.500 0.00 0.00 0.00 3.77
2645 6830 6.901887 GCTTGATGTTGTACTCGAATATGTTG 59.098 38.462 0.00 0.00 0.00 3.33
2646 6831 6.818644 AGCTTGATGTTGTACTCGAATATGTT 59.181 34.615 0.00 0.00 0.00 2.71
2647 6832 6.341316 AGCTTGATGTTGTACTCGAATATGT 58.659 36.000 0.00 0.00 0.00 2.29
2648 6833 6.834959 AGCTTGATGTTGTACTCGAATATG 57.165 37.500 0.00 0.00 0.00 1.78
2649 6834 7.489160 TGTAGCTTGATGTTGTACTCGAATAT 58.511 34.615 0.00 0.00 0.00 1.28
2650 6835 6.859017 TGTAGCTTGATGTTGTACTCGAATA 58.141 36.000 0.00 0.00 0.00 1.75
2651 6836 5.720202 TGTAGCTTGATGTTGTACTCGAAT 58.280 37.500 0.00 0.00 0.00 3.34
2652 6837 5.128992 TGTAGCTTGATGTTGTACTCGAA 57.871 39.130 0.00 0.00 0.00 3.71
2653 6838 4.776795 TGTAGCTTGATGTTGTACTCGA 57.223 40.909 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.