Multiple sequence alignment - TraesCS3A01G360700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G360700 chr3A 100.000 3764 0 0 1 3764 608369090 608365327 0.000000e+00 6951.0
1 TraesCS3A01G360700 chr3A 99.177 2793 22 1 1 2793 508178335 508175544 0.000000e+00 5029.0
2 TraesCS3A01G360700 chr3A 79.849 397 58 12 2819 3197 700755087 700754695 1.720000e-68 270.0
3 TraesCS3A01G360700 chr7A 99.248 2793 21 0 1 2793 499576676 499573884 0.000000e+00 5042.0
4 TraesCS3A01G360700 chr7A 99.177 2793 20 1 1 2793 705598542 705601331 0.000000e+00 5027.0
5 TraesCS3A01G360700 chr7A 81.336 434 77 4 3333 3764 681485942 681485511 2.150000e-92 350.0
6 TraesCS3A01G360700 chr7A 81.061 396 55 12 2819 3197 267565454 267565062 7.900000e-77 298.0
7 TraesCS3A01G360700 chr7A 81.061 396 54 13 2819 3197 641236836 641237227 2.840000e-76 296.0
8 TraesCS3A01G360700 chr7A 92.453 53 4 0 3283 3335 445741362 445741310 4.030000e-10 76.8
9 TraesCS3A01G360700 chr5B 99.213 2794 22 0 1 2794 473813924 473811131 0.000000e+00 5038.0
10 TraesCS3A01G360700 chr5B 99.177 2794 23 0 1 2794 411042965 411040172 0.000000e+00 5033.0
11 TraesCS3A01G360700 chr5B 92.857 308 19 1 3031 3335 589111961 589112268 9.590000e-121 444.0
12 TraesCS3A01G360700 chr5B 94.828 58 3 0 2819 2876 589111761 589111818 1.440000e-14 91.6
13 TraesCS3A01G360700 chr2B 99.177 2793 23 0 1 2793 157365813 157363021 0.000000e+00 5031.0
14 TraesCS3A01G360700 chr2B 99.177 2793 23 0 1 2793 384101803 384104595 0.000000e+00 5031.0
15 TraesCS3A01G360700 chr2B 99.177 2793 23 0 1 2793 592776180 592773388 0.000000e+00 5031.0
16 TraesCS3A01G360700 chr1A 99.071 2798 26 0 1 2798 66999918 67002715 0.000000e+00 5024.0
17 TraesCS3A01G360700 chr4A 98.135 429 8 0 3336 3764 88769988 88769560 0.000000e+00 749.0
18 TraesCS3A01G360700 chr7B 91.376 545 40 4 2793 3335 746730241 746730780 0.000000e+00 739.0
19 TraesCS3A01G360700 chr7D 95.305 426 20 0 2793 3218 11411940 11411515 0.000000e+00 676.0
20 TraesCS3A01G360700 chr7D 96.440 309 10 1 2910 3218 74432747 74432440 3.350000e-140 508.0
21 TraesCS3A01G360700 chr6A 91.183 431 38 0 3334 3764 609746306 609745876 1.510000e-163 586.0
22 TraesCS3A01G360700 chr5D 90.951 431 39 0 3334 3764 352815508 352815938 7.010000e-162 580.0
23 TraesCS3A01G360700 chr1D 90.278 432 41 1 3334 3764 352195093 352195524 7.060000e-157 564.0
24 TraesCS3A01G360700 chr1D 89.559 431 45 0 3334 3764 318136469 318136039 7.110000e-152 547.0
25 TraesCS3A01G360700 chr1D 88.631 431 49 0 3334 3764 437286688 437287118 3.330000e-145 525.0
26 TraesCS3A01G360700 chr1D 84.127 504 50 16 2819 3304 126990229 126990720 9.530000e-126 460.0
27 TraesCS3A01G360700 chr1D 81.772 395 53 12 2819 3197 388277491 388277100 2.820000e-81 313.0
28 TraesCS3A01G360700 chr1B 89.535 430 45 0 3335 3764 16601249 16600820 2.560000e-151 545.0
29 TraesCS3A01G360700 chr6D 86.148 527 42 13 2822 3335 309071663 309071155 1.190000e-149 540.0
30 TraesCS3A01G360700 chr6D 85.472 530 47 12 2819 3335 38812056 38812568 3.330000e-145 525.0
31 TraesCS3A01G360700 chr6D 84.791 526 56 10 2819 3335 45384648 45385158 1.210000e-139 507.0
32 TraesCS3A01G360700 chr6D 82.870 432 55 14 2802 3231 464955088 464955502 1.650000e-98 370.0
33 TraesCS3A01G360700 chr3B 89.145 433 44 3 3334 3764 605500204 605499773 1.540000e-148 536.0
34 TraesCS3A01G360700 chr5A 85.632 522 59 9 2819 3337 41085861 41086369 5.530000e-148 534.0
35 TraesCS3A01G360700 chr6B 84.404 545 47 16 2820 3335 22653648 22653113 5.610000e-138 501.0
36 TraesCS3A01G360700 chr6B 84.231 520 57 15 2836 3335 555431181 555430667 2.030000e-132 483.0
37 TraesCS3A01G360700 chr4D 83.939 523 72 9 2819 3335 186313356 186313872 1.210000e-134 490.0
38 TraesCS3A01G360700 chr2A 93.289 149 8 2 3189 3337 758099416 758099562 6.330000e-53 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G360700 chr3A 608365327 608369090 3763 True 6951.0 6951 100.0000 1 3764 1 chr3A.!!$R2 3763
1 TraesCS3A01G360700 chr3A 508175544 508178335 2791 True 5029.0 5029 99.1770 1 2793 1 chr3A.!!$R1 2792
2 TraesCS3A01G360700 chr7A 499573884 499576676 2792 True 5042.0 5042 99.2480 1 2793 1 chr7A.!!$R3 2792
3 TraesCS3A01G360700 chr7A 705598542 705601331 2789 False 5027.0 5027 99.1770 1 2793 1 chr7A.!!$F2 2792
4 TraesCS3A01G360700 chr5B 473811131 473813924 2793 True 5038.0 5038 99.2130 1 2794 1 chr5B.!!$R2 2793
5 TraesCS3A01G360700 chr5B 411040172 411042965 2793 True 5033.0 5033 99.1770 1 2794 1 chr5B.!!$R1 2793
6 TraesCS3A01G360700 chr5B 589111761 589112268 507 False 267.8 444 93.8425 2819 3335 2 chr5B.!!$F1 516
7 TraesCS3A01G360700 chr2B 157363021 157365813 2792 True 5031.0 5031 99.1770 1 2793 1 chr2B.!!$R1 2792
8 TraesCS3A01G360700 chr2B 384101803 384104595 2792 False 5031.0 5031 99.1770 1 2793 1 chr2B.!!$F1 2792
9 TraesCS3A01G360700 chr2B 592773388 592776180 2792 True 5031.0 5031 99.1770 1 2793 1 chr2B.!!$R2 2792
10 TraesCS3A01G360700 chr1A 66999918 67002715 2797 False 5024.0 5024 99.0710 1 2798 1 chr1A.!!$F1 2797
11 TraesCS3A01G360700 chr7B 746730241 746730780 539 False 739.0 739 91.3760 2793 3335 1 chr7B.!!$F1 542
12 TraesCS3A01G360700 chr6D 309071155 309071663 508 True 540.0 540 86.1480 2822 3335 1 chr6D.!!$R1 513
13 TraesCS3A01G360700 chr6D 38812056 38812568 512 False 525.0 525 85.4720 2819 3335 1 chr6D.!!$F1 516
14 TraesCS3A01G360700 chr6D 45384648 45385158 510 False 507.0 507 84.7910 2819 3335 1 chr6D.!!$F2 516
15 TraesCS3A01G360700 chr5A 41085861 41086369 508 False 534.0 534 85.6320 2819 3337 1 chr5A.!!$F1 518
16 TraesCS3A01G360700 chr6B 22653113 22653648 535 True 501.0 501 84.4040 2820 3335 1 chr6B.!!$R1 515
17 TraesCS3A01G360700 chr6B 555430667 555431181 514 True 483.0 483 84.2310 2836 3335 1 chr6B.!!$R2 499
18 TraesCS3A01G360700 chr4D 186313356 186313872 516 False 490.0 490 83.9390 2819 3335 1 chr4D.!!$F1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 709 2.831526 AGTGAACCACCTTTTGTTTGCT 59.168 40.909 0.0 0.0 34.49 3.91 F
1124 1125 1.803334 TGTGGAAGCATTACGTCACC 58.197 50.000 0.0 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 1941 2.922234 GCCAGCTATCCTGCCCTT 59.078 61.111 0.0 0.0 40.36 3.95 R
2834 2838 1.456919 TAGGGATCGGGATGAGGAGA 58.543 55.000 0.0 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
656 657 3.759086 AGTTCTCAGTCATTAGTGCTCGA 59.241 43.478 0.00 0.00 0.00 4.04
708 709 2.831526 AGTGAACCACCTTTTGTTTGCT 59.168 40.909 0.00 0.00 34.49 3.91
845 846 5.835280 CCATATTTTTCAGTAAGGGATGCCT 59.165 40.000 0.00 0.00 0.00 4.75
1124 1125 1.803334 TGTGGAAGCATTACGTCACC 58.197 50.000 0.00 0.00 0.00 4.02
1172 1173 3.454858 AGAGAGGCAAGAGGAAACCATA 58.545 45.455 0.00 0.00 0.00 2.74
1940 1941 1.153369 GTGCTTGCTCCCTATGCGA 60.153 57.895 0.00 0.00 0.00 5.10
2101 2102 0.108424 CTCTCTTCCACCGGAGCAAG 60.108 60.000 9.46 0.93 31.21 4.01
2600 2604 5.010933 TGTCGAGGAAATCAAGACTAGAGT 58.989 41.667 0.00 0.00 33.40 3.24
2834 2838 1.388065 CCTCGCCCTCATCTCTTCGT 61.388 60.000 0.00 0.00 0.00 3.85
2934 2947 0.394352 GGGGAATGTTGACATCGGCT 60.394 55.000 0.00 0.00 35.10 5.52
2949 2962 2.895680 GCTGACCGATCTGCCAGA 59.104 61.111 4.65 0.00 42.40 3.86
2954 2967 4.147449 CCGATCTGCCAGACCGCA 62.147 66.667 1.95 0.00 37.19 5.69
2960 2973 4.254709 TGCCAGACCGCAACTGCT 62.255 61.111 0.00 0.00 39.32 4.24
2967 2980 3.521560 CAGACCGCAACTGCTTAATCTA 58.478 45.455 0.00 0.00 39.32 1.98
3004 3040 1.202855 CCCATCCCAGGTAATCTGCAG 60.203 57.143 7.63 7.63 42.05 4.41
3008 3044 3.398318 TCCCAGGTAATCTGCAGTCTA 57.602 47.619 14.67 3.48 42.05 2.59
3016 3052 6.265196 CAGGTAATCTGCAGTCTATCTCTCTT 59.735 42.308 14.67 0.00 36.60 2.85
3062 3120 6.335471 ACATGTGCTTTGATTTCTTGATGA 57.665 33.333 0.00 0.00 0.00 2.92
3066 3124 6.902341 TGTGCTTTGATTTCTTGATGACTAC 58.098 36.000 0.00 0.00 0.00 2.73
3126 3196 6.257586 ACTAAGACCAGGAGGATATGGATAC 58.742 44.000 0.00 0.00 39.02 2.24
3146 3218 7.039363 TGGATACATTTTCGTTGAAAGGGAAAT 60.039 33.333 0.00 0.00 46.17 2.17
3225 3300 9.139734 ACAAGATCTTGCATCAAATATTGGTAT 57.860 29.630 30.95 6.43 44.03 2.73
3336 3411 8.820153 AATCCTAAGAAGCAAGATGAGATTTT 57.180 30.769 0.00 0.00 0.00 1.82
3337 3412 8.820153 ATCCTAAGAAGCAAGATGAGATTTTT 57.180 30.769 0.00 0.00 0.00 1.94
3357 3432 5.984233 TTTTTCTCGAATACGCATAGCAT 57.016 34.783 0.00 0.00 39.58 3.79
3358 3433 4.972286 TTTCTCGAATACGCATAGCATG 57.028 40.909 0.00 0.00 39.58 4.06
3376 3451 8.925700 CATAGCATGCGTATCTTGTATTAAAGA 58.074 33.333 13.01 0.00 40.36 2.52
3377 3452 7.786178 AGCATGCGTATCTTGTATTAAAGAA 57.214 32.000 13.01 0.00 39.54 2.52
3378 3453 7.855545 AGCATGCGTATCTTGTATTAAAGAAG 58.144 34.615 13.01 0.00 39.54 2.85
3379 3454 7.710907 AGCATGCGTATCTTGTATTAAAGAAGA 59.289 33.333 13.01 0.00 41.35 2.87
3380 3455 8.335356 GCATGCGTATCTTGTATTAAAGAAGAA 58.665 33.333 0.00 0.00 40.57 2.52
3383 3458 8.879759 TGCGTATCTTGTATTAAAGAAGAAAGG 58.120 33.333 0.00 0.00 40.57 3.11
3384 3459 8.336080 GCGTATCTTGTATTAAAGAAGAAAGGG 58.664 37.037 0.00 0.00 40.57 3.95
3385 3460 8.827677 CGTATCTTGTATTAAAGAAGAAAGGGG 58.172 37.037 0.00 0.00 40.57 4.79
3386 3461 9.682465 GTATCTTGTATTAAAGAAGAAAGGGGT 57.318 33.333 0.00 0.00 40.57 4.95
3388 3463 9.682465 ATCTTGTATTAAAGAAGAAAGGGGTAC 57.318 33.333 0.00 0.00 40.57 3.34
3389 3464 8.662255 TCTTGTATTAAAGAAGAAAGGGGTACA 58.338 33.333 0.00 0.00 34.71 2.90
3390 3465 9.292195 CTTGTATTAAAGAAGAAAGGGGTACAA 57.708 33.333 0.00 0.00 29.89 2.41
3391 3466 8.857694 TGTATTAAAGAAGAAAGGGGTACAAG 57.142 34.615 0.00 0.00 0.00 3.16
3392 3467 7.886446 TGTATTAAAGAAGAAAGGGGTACAAGG 59.114 37.037 0.00 0.00 0.00 3.61
3393 3468 6.518516 TTAAAGAAGAAAGGGGTACAAGGA 57.481 37.500 0.00 0.00 0.00 3.36
3394 3469 4.368565 AAGAAGAAAGGGGTACAAGGAC 57.631 45.455 0.00 0.00 0.00 3.85
3395 3470 2.643304 AGAAGAAAGGGGTACAAGGACC 59.357 50.000 0.00 0.00 38.93 4.46
3402 3477 1.988817 GGTACAAGGACCCTCCACC 59.011 63.158 0.00 0.00 39.61 4.61
3403 3478 1.595357 GTACAAGGACCCTCCACCG 59.405 63.158 0.00 0.00 39.61 4.94
3404 3479 1.611261 TACAAGGACCCTCCACCGG 60.611 63.158 0.00 0.00 39.61 5.28
3411 3486 2.524044 CCCTCCACCGGGGTTTTT 59.476 61.111 6.32 0.00 40.75 1.94
3412 3487 1.769006 CCCTCCACCGGGGTTTTTA 59.231 57.895 6.32 0.00 40.75 1.52
3413 3488 0.609957 CCCTCCACCGGGGTTTTTAC 60.610 60.000 6.32 0.00 40.75 2.01
3414 3489 0.110869 CCTCCACCGGGGTTTTTACA 59.889 55.000 6.32 0.00 38.11 2.41
3415 3490 1.479021 CCTCCACCGGGGTTTTTACAA 60.479 52.381 6.32 0.00 38.11 2.41
3416 3491 1.610038 CTCCACCGGGGTTTTTACAAC 59.390 52.381 6.32 0.00 38.11 3.32
3417 3492 1.064166 TCCACCGGGGTTTTTACAACA 60.064 47.619 6.32 0.00 38.11 3.33
3418 3493 1.067364 CCACCGGGGTTTTTACAACAC 59.933 52.381 6.32 0.00 0.00 3.32
3419 3494 1.749634 CACCGGGGTTTTTACAACACA 59.250 47.619 6.32 0.00 0.00 3.72
3420 3495 1.750206 ACCGGGGTTTTTACAACACAC 59.250 47.619 6.32 0.00 0.00 3.82
3421 3496 1.067364 CCGGGGTTTTTACAACACACC 59.933 52.381 0.00 0.00 0.00 4.16
3422 3497 1.749634 CGGGGTTTTTACAACACACCA 59.250 47.619 0.00 0.00 0.00 4.17
3423 3498 2.165845 CGGGGTTTTTACAACACACCAA 59.834 45.455 0.00 0.00 0.00 3.67
3424 3499 3.523547 GGGGTTTTTACAACACACCAAC 58.476 45.455 0.00 0.00 0.00 3.77
3425 3500 3.056035 GGGGTTTTTACAACACACCAACA 60.056 43.478 0.00 0.00 0.00 3.33
3426 3501 3.927758 GGGTTTTTACAACACACCAACAC 59.072 43.478 0.00 0.00 0.00 3.32
3427 3502 3.927758 GGTTTTTACAACACACCAACACC 59.072 43.478 0.00 0.00 0.00 4.16
3428 3503 4.557205 GTTTTTACAACACACCAACACCA 58.443 39.130 0.00 0.00 0.00 4.17
3429 3504 3.851976 TTTACAACACACCAACACCAC 57.148 42.857 0.00 0.00 0.00 4.16
3430 3505 2.791347 TACAACACACCAACACCACT 57.209 45.000 0.00 0.00 0.00 4.00
3431 3506 1.173043 ACAACACACCAACACCACTG 58.827 50.000 0.00 0.00 0.00 3.66
3432 3507 1.271652 ACAACACACCAACACCACTGA 60.272 47.619 0.00 0.00 0.00 3.41
3433 3508 1.401552 CAACACACCAACACCACTGAG 59.598 52.381 0.00 0.00 0.00 3.35
3434 3509 0.107214 ACACACCAACACCACTGAGG 60.107 55.000 0.00 0.00 45.67 3.86
3435 3510 0.819259 CACACCAACACCACTGAGGG 60.819 60.000 0.00 0.00 43.89 4.30
3436 3511 1.279025 ACACCAACACCACTGAGGGT 61.279 55.000 0.00 0.00 43.89 4.34
3442 3517 3.377656 ACCACTGAGGGTGCTACG 58.622 61.111 0.00 0.00 44.08 3.51
3443 3518 1.533273 ACCACTGAGGGTGCTACGT 60.533 57.895 0.00 0.00 44.08 3.57
3444 3519 0.251474 ACCACTGAGGGTGCTACGTA 60.251 55.000 0.00 0.00 44.08 3.57
3445 3520 0.892755 CCACTGAGGGTGCTACGTAA 59.107 55.000 0.00 0.00 44.08 3.18
3446 3521 1.403780 CCACTGAGGGTGCTACGTAAC 60.404 57.143 0.00 0.00 44.08 2.50
3447 3522 1.271379 CACTGAGGGTGCTACGTAACA 59.729 52.381 0.00 0.00 39.22 2.41
3448 3523 1.271656 ACTGAGGGTGCTACGTAACAC 59.728 52.381 18.62 18.62 36.03 3.32
3454 3529 1.706443 GTGCTACGTAACACCCTCAC 58.294 55.000 16.54 3.78 0.00 3.51
3455 3530 0.604578 TGCTACGTAACACCCTCACC 59.395 55.000 0.00 0.00 0.00 4.02
3456 3531 0.604578 GCTACGTAACACCCTCACCA 59.395 55.000 0.00 0.00 0.00 4.17
3457 3532 1.670967 GCTACGTAACACCCTCACCAC 60.671 57.143 0.00 0.00 0.00 4.16
3458 3533 0.968405 TACGTAACACCCTCACCACC 59.032 55.000 0.00 0.00 0.00 4.61
3459 3534 1.373748 CGTAACACCCTCACCACCG 60.374 63.158 0.00 0.00 0.00 4.94
3460 3535 1.750297 GTAACACCCTCACCACCGT 59.250 57.895 0.00 0.00 0.00 4.83
3461 3536 0.968405 GTAACACCCTCACCACCGTA 59.032 55.000 0.00 0.00 0.00 4.02
3462 3537 0.968405 TAACACCCTCACCACCGTAC 59.032 55.000 0.00 0.00 0.00 3.67
3463 3538 1.761500 AACACCCTCACCACCGTACC 61.761 60.000 0.00 0.00 0.00 3.34
3464 3539 2.605601 ACCCTCACCACCGTACCC 60.606 66.667 0.00 0.00 0.00 3.69
3465 3540 2.284405 CCCTCACCACCGTACCCT 60.284 66.667 0.00 0.00 0.00 4.34
3466 3541 1.000739 CCCTCACCACCGTACCCTA 59.999 63.158 0.00 0.00 0.00 3.53
3467 3542 1.041447 CCCTCACCACCGTACCCTAG 61.041 65.000 0.00 0.00 0.00 3.02
3468 3543 0.033796 CCTCACCACCGTACCCTAGA 60.034 60.000 0.00 0.00 0.00 2.43
3469 3544 1.101331 CTCACCACCGTACCCTAGAC 58.899 60.000 0.00 0.00 0.00 2.59
3470 3545 0.700564 TCACCACCGTACCCTAGACT 59.299 55.000 0.00 0.00 0.00 3.24
3471 3546 1.915489 TCACCACCGTACCCTAGACTA 59.085 52.381 0.00 0.00 0.00 2.59
3472 3547 2.092753 TCACCACCGTACCCTAGACTAG 60.093 54.545 2.18 2.18 0.00 2.57
3473 3548 1.316651 CCACCGTACCCTAGACTAGC 58.683 60.000 3.76 0.00 0.00 3.42
3474 3549 1.133853 CCACCGTACCCTAGACTAGCT 60.134 57.143 3.76 0.00 0.00 3.32
3475 3550 2.220313 CACCGTACCCTAGACTAGCTC 58.780 57.143 3.76 0.00 0.00 4.09
3476 3551 2.126057 ACCGTACCCTAGACTAGCTCT 58.874 52.381 3.76 0.00 0.00 4.09
3477 3552 3.070734 CACCGTACCCTAGACTAGCTCTA 59.929 52.174 3.76 0.00 0.00 2.43
3478 3553 3.070878 ACCGTACCCTAGACTAGCTCTAC 59.929 52.174 3.76 2.57 0.00 2.59
3479 3554 3.316283 CGTACCCTAGACTAGCTCTACG 58.684 54.545 3.76 9.80 0.00 3.51
3480 3555 3.243704 CGTACCCTAGACTAGCTCTACGT 60.244 52.174 16.30 0.00 0.00 3.57
3481 3556 3.473923 ACCCTAGACTAGCTCTACGTC 57.526 52.381 3.76 0.00 0.00 4.34
3482 3557 3.040477 ACCCTAGACTAGCTCTACGTCT 58.960 50.000 3.76 11.16 40.74 4.18
3483 3558 3.070015 ACCCTAGACTAGCTCTACGTCTC 59.930 52.174 3.76 0.00 38.77 3.36
3484 3559 3.311106 CCTAGACTAGCTCTACGTCTCG 58.689 54.545 3.76 5.85 38.77 4.04
3485 3560 2.965572 AGACTAGCTCTACGTCTCGT 57.034 50.000 0.00 0.00 44.35 4.18
3486 3561 2.813061 AGACTAGCTCTACGTCTCGTC 58.187 52.381 0.00 0.00 41.54 4.20
3487 3562 1.860326 GACTAGCTCTACGTCTCGTCC 59.140 57.143 0.00 0.00 41.54 4.79
3488 3563 1.206610 ACTAGCTCTACGTCTCGTCCA 59.793 52.381 0.00 0.00 41.54 4.02
3489 3564 2.158928 ACTAGCTCTACGTCTCGTCCAT 60.159 50.000 0.00 0.00 41.54 3.41
3490 3565 2.616634 AGCTCTACGTCTCGTCCATA 57.383 50.000 0.00 0.00 41.54 2.74
3491 3566 2.485903 AGCTCTACGTCTCGTCCATAG 58.514 52.381 0.00 0.00 41.54 2.23
3492 3567 1.069771 GCTCTACGTCTCGTCCATAGC 60.070 57.143 0.00 1.11 41.54 2.97
3493 3568 1.532007 CTCTACGTCTCGTCCATAGCC 59.468 57.143 0.00 0.00 41.54 3.93
3494 3569 0.592148 CTACGTCTCGTCCATAGCCC 59.408 60.000 0.00 0.00 41.54 5.19
3495 3570 0.107066 TACGTCTCGTCCATAGCCCA 60.107 55.000 0.00 0.00 41.54 5.36
3496 3571 1.065928 CGTCTCGTCCATAGCCCAC 59.934 63.158 0.00 0.00 0.00 4.61
3497 3572 1.663379 CGTCTCGTCCATAGCCCACA 61.663 60.000 0.00 0.00 0.00 4.17
3498 3573 0.753262 GTCTCGTCCATAGCCCACAT 59.247 55.000 0.00 0.00 0.00 3.21
3499 3574 0.752658 TCTCGTCCATAGCCCACATG 59.247 55.000 0.00 0.00 0.00 3.21
3500 3575 0.465705 CTCGTCCATAGCCCACATGT 59.534 55.000 0.00 0.00 0.00 3.21
3501 3576 0.177836 TCGTCCATAGCCCACATGTG 59.822 55.000 19.31 19.31 0.00 3.21
3502 3577 0.177836 CGTCCATAGCCCACATGTGA 59.822 55.000 27.46 7.46 0.00 3.58
3503 3578 1.406751 CGTCCATAGCCCACATGTGAA 60.407 52.381 27.46 9.74 0.00 3.18
3504 3579 2.292267 GTCCATAGCCCACATGTGAAG 58.708 52.381 27.46 18.05 0.00 3.02
3505 3580 1.027357 CCATAGCCCACATGTGAAGC 58.973 55.000 27.46 25.98 0.00 3.86
3506 3581 1.409241 CCATAGCCCACATGTGAAGCT 60.409 52.381 32.29 32.29 41.00 3.74
3507 3582 1.674441 CATAGCCCACATGTGAAGCTG 59.326 52.381 34.84 23.97 39.30 4.24
3508 3583 0.677731 TAGCCCACATGTGAAGCTGC 60.678 55.000 34.84 24.48 39.30 5.25
3509 3584 1.975407 GCCCACATGTGAAGCTGCT 60.975 57.895 27.46 0.00 0.00 4.24
3510 3585 1.930908 GCCCACATGTGAAGCTGCTC 61.931 60.000 27.46 1.59 0.00 4.26
3511 3586 0.607217 CCCACATGTGAAGCTGCTCA 60.607 55.000 27.46 0.00 0.00 4.26
3512 3587 1.241165 CCACATGTGAAGCTGCTCAA 58.759 50.000 27.46 0.00 0.00 3.02
3513 3588 1.610038 CCACATGTGAAGCTGCTCAAA 59.390 47.619 27.46 0.00 0.00 2.69
3514 3589 2.351447 CCACATGTGAAGCTGCTCAAAG 60.351 50.000 27.46 1.42 0.00 2.77
3515 3590 2.551032 CACATGTGAAGCTGCTCAAAGA 59.449 45.455 21.64 0.00 0.00 2.52
3516 3591 3.004002 CACATGTGAAGCTGCTCAAAGAA 59.996 43.478 21.64 0.00 0.00 2.52
3517 3592 3.252701 ACATGTGAAGCTGCTCAAAGAAG 59.747 43.478 1.00 0.00 0.00 2.85
3518 3593 2.224606 TGTGAAGCTGCTCAAAGAAGG 58.775 47.619 1.00 0.00 0.00 3.46
3519 3594 2.158769 TGTGAAGCTGCTCAAAGAAGGA 60.159 45.455 1.00 0.00 0.00 3.36
3520 3595 3.080319 GTGAAGCTGCTCAAAGAAGGAT 58.920 45.455 1.00 0.00 0.00 3.24
3521 3596 3.126686 GTGAAGCTGCTCAAAGAAGGATC 59.873 47.826 1.00 0.00 0.00 3.36
3522 3597 2.416680 AGCTGCTCAAAGAAGGATCC 57.583 50.000 2.48 2.48 0.00 3.36
3523 3598 1.064832 AGCTGCTCAAAGAAGGATCCC 60.065 52.381 8.55 0.00 0.00 3.85
3524 3599 1.340405 GCTGCTCAAAGAAGGATCCCA 60.340 52.381 8.55 0.00 0.00 4.37
3525 3600 2.686118 GCTGCTCAAAGAAGGATCCCAT 60.686 50.000 8.55 0.00 0.00 4.00
3526 3601 2.950309 CTGCTCAAAGAAGGATCCCATG 59.050 50.000 8.55 0.76 0.00 3.66
3527 3602 2.309755 TGCTCAAAGAAGGATCCCATGT 59.690 45.455 8.55 0.00 0.00 3.21
3528 3603 2.948315 GCTCAAAGAAGGATCCCATGTC 59.052 50.000 8.55 0.96 0.00 3.06
3529 3604 3.549794 CTCAAAGAAGGATCCCATGTCC 58.450 50.000 8.55 0.00 35.94 4.02
3530 3605 2.092968 TCAAAGAAGGATCCCATGTCCG 60.093 50.000 8.55 0.00 40.76 4.79
3531 3606 1.584724 AAGAAGGATCCCATGTCCGT 58.415 50.000 8.55 0.00 40.76 4.69
3532 3607 1.123928 AGAAGGATCCCATGTCCGTC 58.876 55.000 8.55 8.22 42.35 4.79
3533 3608 0.106894 GAAGGATCCCATGTCCGTCC 59.893 60.000 8.55 1.67 40.76 4.79
3534 3609 0.326618 AAGGATCCCATGTCCGTCCT 60.327 55.000 8.55 0.00 40.91 3.85
3535 3610 0.326618 AGGATCCCATGTCCGTCCTT 60.327 55.000 8.55 0.00 40.76 3.36
3536 3611 1.062428 AGGATCCCATGTCCGTCCTTA 60.062 52.381 8.55 0.00 40.76 2.69
3537 3612 1.978580 GGATCCCATGTCCGTCCTTAT 59.021 52.381 0.00 0.00 0.00 1.73
3538 3613 2.289694 GGATCCCATGTCCGTCCTTATG 60.290 54.545 0.00 0.00 0.00 1.90
3539 3614 2.168458 TCCCATGTCCGTCCTTATGA 57.832 50.000 0.00 0.00 0.00 2.15
3540 3615 2.039418 TCCCATGTCCGTCCTTATGAG 58.961 52.381 0.00 0.00 0.00 2.90
3541 3616 1.070758 CCCATGTCCGTCCTTATGAGG 59.929 57.143 0.00 0.00 45.02 3.86
3542 3617 1.541233 CCATGTCCGTCCTTATGAGGC 60.541 57.143 0.00 0.00 43.21 4.70
3543 3618 0.759346 ATGTCCGTCCTTATGAGGCC 59.241 55.000 0.00 0.00 43.21 5.19
3544 3619 1.335132 TGTCCGTCCTTATGAGGCCC 61.335 60.000 0.00 0.00 43.21 5.80
3545 3620 2.131709 TCCGTCCTTATGAGGCCCG 61.132 63.158 0.00 3.73 43.21 6.13
3546 3621 2.280186 CGTCCTTATGAGGCCCGC 60.280 66.667 0.00 0.00 43.21 6.13
3547 3622 2.111251 GTCCTTATGAGGCCCGCC 59.889 66.667 0.00 0.00 43.21 6.13
3548 3623 2.366301 TCCTTATGAGGCCCGCCA 60.366 61.111 8.74 0.00 43.21 5.69
3549 3624 1.770110 TCCTTATGAGGCCCGCCAT 60.770 57.895 8.74 3.36 43.21 4.40
3550 3625 1.302832 CCTTATGAGGCCCGCCATC 60.303 63.158 8.74 3.58 35.94 3.51
3551 3626 1.757306 CTTATGAGGCCCGCCATCT 59.243 57.895 8.74 0.00 38.92 2.90
3552 3627 0.109342 CTTATGAGGCCCGCCATCTT 59.891 55.000 8.74 4.11 38.92 2.40
3553 3628 0.108585 TTATGAGGCCCGCCATCTTC 59.891 55.000 8.74 0.00 38.92 2.87
3554 3629 1.768684 TATGAGGCCCGCCATCTTCC 61.769 60.000 8.74 0.00 38.92 3.46
3555 3630 3.797353 GAGGCCCGCCATCTTCCA 61.797 66.667 8.74 0.00 38.92 3.53
3556 3631 3.338250 AGGCCCGCCATCTTCCAA 61.338 61.111 8.74 0.00 38.92 3.53
3557 3632 2.830370 GGCCCGCCATCTTCCAAG 60.830 66.667 0.00 0.00 35.81 3.61
3558 3633 2.044946 GCCCGCCATCTTCCAAGT 60.045 61.111 0.00 0.00 0.00 3.16
3559 3634 1.678970 GCCCGCCATCTTCCAAGTT 60.679 57.895 0.00 0.00 0.00 2.66
3560 3635 1.657751 GCCCGCCATCTTCCAAGTTC 61.658 60.000 0.00 0.00 0.00 3.01
3561 3636 0.035056 CCCGCCATCTTCCAAGTTCT 60.035 55.000 0.00 0.00 0.00 3.01
3562 3637 1.209504 CCCGCCATCTTCCAAGTTCTA 59.790 52.381 0.00 0.00 0.00 2.10
3563 3638 2.280628 CCGCCATCTTCCAAGTTCTAC 58.719 52.381 0.00 0.00 0.00 2.59
3564 3639 2.280628 CGCCATCTTCCAAGTTCTACC 58.719 52.381 0.00 0.00 0.00 3.18
3565 3640 2.644676 GCCATCTTCCAAGTTCTACCC 58.355 52.381 0.00 0.00 0.00 3.69
3566 3641 2.239907 GCCATCTTCCAAGTTCTACCCT 59.760 50.000 0.00 0.00 0.00 4.34
3567 3642 3.682999 GCCATCTTCCAAGTTCTACCCTC 60.683 52.174 0.00 0.00 0.00 4.30
3568 3643 3.519510 CCATCTTCCAAGTTCTACCCTCA 59.480 47.826 0.00 0.00 0.00 3.86
3569 3644 4.383552 CCATCTTCCAAGTTCTACCCTCAG 60.384 50.000 0.00 0.00 0.00 3.35
3570 3645 4.127918 TCTTCCAAGTTCTACCCTCAGA 57.872 45.455 0.00 0.00 0.00 3.27
3571 3646 4.489737 TCTTCCAAGTTCTACCCTCAGAA 58.510 43.478 0.00 0.00 32.11 3.02
3572 3647 4.905456 TCTTCCAAGTTCTACCCTCAGAAA 59.095 41.667 0.00 0.00 36.34 2.52
3573 3648 4.891992 TCCAAGTTCTACCCTCAGAAAG 57.108 45.455 0.00 0.00 36.34 2.62
3574 3649 3.583086 TCCAAGTTCTACCCTCAGAAAGG 59.417 47.826 0.00 0.00 45.77 3.11
3575 3650 3.328050 CCAAGTTCTACCCTCAGAAAGGT 59.672 47.826 0.00 0.00 44.56 3.50
3576 3651 4.530946 CCAAGTTCTACCCTCAGAAAGGTA 59.469 45.833 0.15 0.15 44.56 3.08
3577 3652 5.480205 CAAGTTCTACCCTCAGAAAGGTAC 58.520 45.833 0.00 0.00 44.56 3.34
3578 3653 4.095211 AGTTCTACCCTCAGAAAGGTACC 58.905 47.826 2.73 2.73 44.56 3.34
3579 3654 4.095211 GTTCTACCCTCAGAAAGGTACCT 58.905 47.826 9.21 9.21 44.56 3.08
3580 3655 5.016031 AGTTCTACCCTCAGAAAGGTACCTA 59.984 44.000 16.67 0.00 44.56 3.08
3581 3656 4.864726 TCTACCCTCAGAAAGGTACCTAC 58.135 47.826 16.67 12.66 44.56 3.18
3582 3657 2.454538 ACCCTCAGAAAGGTACCTACG 58.545 52.381 16.67 4.13 44.56 3.51
3583 3658 2.042162 ACCCTCAGAAAGGTACCTACGA 59.958 50.000 16.67 8.46 44.56 3.43
3584 3659 3.094572 CCCTCAGAAAGGTACCTACGAA 58.905 50.000 16.67 5.69 44.56 3.85
3585 3660 3.119209 CCCTCAGAAAGGTACCTACGAAC 60.119 52.174 16.67 5.31 44.56 3.95
3586 3661 3.762823 CCTCAGAAAGGTACCTACGAACT 59.237 47.826 16.67 7.55 40.67 3.01
3587 3662 4.946157 CCTCAGAAAGGTACCTACGAACTA 59.054 45.833 16.67 0.00 40.67 2.24
3588 3663 5.066246 CCTCAGAAAGGTACCTACGAACTAG 59.934 48.000 16.67 7.18 40.67 2.57
3589 3664 5.564550 TCAGAAAGGTACCTACGAACTAGT 58.435 41.667 16.67 0.00 0.00 2.57
3590 3665 6.006449 TCAGAAAGGTACCTACGAACTAGTT 58.994 40.000 16.67 8.13 0.00 2.24
3591 3666 6.491403 TCAGAAAGGTACCTACGAACTAGTTT 59.509 38.462 16.67 0.76 0.00 2.66
3592 3667 7.665559 TCAGAAAGGTACCTACGAACTAGTTTA 59.334 37.037 16.67 0.00 0.00 2.01
3593 3668 7.967303 CAGAAAGGTACCTACGAACTAGTTTAG 59.033 40.741 16.67 8.33 0.00 1.85
3594 3669 7.667635 AGAAAGGTACCTACGAACTAGTTTAGT 59.332 37.037 16.67 14.87 41.73 2.24
3595 3670 8.863872 AAAGGTACCTACGAACTAGTTTAGTA 57.136 34.615 16.67 15.18 38.26 1.82
3596 3671 8.863872 AAGGTACCTACGAACTAGTTTAGTAA 57.136 34.615 16.67 1.15 38.26 2.24
3597 3672 8.499403 AGGTACCTACGAACTAGTTTAGTAAG 57.501 38.462 14.41 12.79 38.26 2.34
3598 3673 8.103935 AGGTACCTACGAACTAGTTTAGTAAGT 58.896 37.037 14.41 20.40 38.26 2.24
3599 3674 8.178313 GGTACCTACGAACTAGTTTAGTAAGTG 58.822 40.741 22.89 16.72 38.26 3.16
3600 3675 7.986085 ACCTACGAACTAGTTTAGTAAGTGA 57.014 36.000 17.95 5.58 38.26 3.41
3601 3676 8.396272 ACCTACGAACTAGTTTAGTAAGTGAA 57.604 34.615 17.95 5.09 38.26 3.18
3602 3677 8.510505 ACCTACGAACTAGTTTAGTAAGTGAAG 58.489 37.037 17.95 11.40 38.26 3.02
3603 3678 7.967303 CCTACGAACTAGTTTAGTAAGTGAAGG 59.033 40.741 10.02 11.05 38.26 3.46
3604 3679 6.685657 ACGAACTAGTTTAGTAAGTGAAGGG 58.314 40.000 10.02 0.00 38.26 3.95
3605 3680 6.098017 CGAACTAGTTTAGTAAGTGAAGGGG 58.902 44.000 10.02 0.00 38.26 4.79
3606 3681 6.071728 CGAACTAGTTTAGTAAGTGAAGGGGA 60.072 42.308 10.02 0.00 38.26 4.81
3607 3682 6.854091 ACTAGTTTAGTAAGTGAAGGGGAG 57.146 41.667 0.00 0.00 37.23 4.30
3608 3683 6.321321 ACTAGTTTAGTAAGTGAAGGGGAGT 58.679 40.000 0.00 0.00 37.23 3.85
3609 3684 5.741962 AGTTTAGTAAGTGAAGGGGAGTC 57.258 43.478 0.00 0.00 0.00 3.36
3610 3685 4.531339 AGTTTAGTAAGTGAAGGGGAGTCC 59.469 45.833 0.00 0.00 0.00 3.85
3620 3695 2.362120 GGGAGTCCCCGTCGAAGA 60.362 66.667 18.55 0.00 44.02 2.87
3633 3708 1.368641 TCGAAGACAATCCCATTGCG 58.631 50.000 0.00 0.00 43.98 4.85
3634 3709 1.066502 TCGAAGACAATCCCATTGCGA 60.067 47.619 0.00 0.00 43.98 5.10
3635 3710 1.942657 CGAAGACAATCCCATTGCGAT 59.057 47.619 0.00 0.00 43.98 4.58
3636 3711 2.286595 CGAAGACAATCCCATTGCGATG 60.287 50.000 6.99 6.99 43.98 3.84
3637 3712 1.027357 AGACAATCCCATTGCGATGC 58.973 50.000 8.58 0.00 43.98 3.91
3638 3713 1.027357 GACAATCCCATTGCGATGCT 58.973 50.000 8.58 0.00 43.98 3.79
3639 3714 1.406539 GACAATCCCATTGCGATGCTT 59.593 47.619 8.58 0.00 43.98 3.91
3640 3715 1.406539 ACAATCCCATTGCGATGCTTC 59.593 47.619 8.58 0.00 43.98 3.86
3641 3716 1.035139 AATCCCATTGCGATGCTTCC 58.965 50.000 8.58 0.00 31.67 3.46
3642 3717 0.106569 ATCCCATTGCGATGCTTCCA 60.107 50.000 8.58 0.00 31.67 3.53
3643 3718 0.323269 TCCCATTGCGATGCTTCCAA 60.323 50.000 8.58 6.15 31.67 3.53
3644 3719 0.531657 CCCATTGCGATGCTTCCAAA 59.468 50.000 8.58 0.00 31.67 3.28
3645 3720 1.470285 CCCATTGCGATGCTTCCAAAG 60.470 52.381 8.58 4.36 31.67 2.77
3665 3740 2.680312 CTCCCAAAGAGCGAGAATGA 57.320 50.000 0.00 0.00 35.31 2.57
3666 3741 3.191078 CTCCCAAAGAGCGAGAATGAT 57.809 47.619 0.00 0.00 35.31 2.45
3667 3742 2.871022 CTCCCAAAGAGCGAGAATGATG 59.129 50.000 0.00 0.00 35.31 3.07
3668 3743 2.501316 TCCCAAAGAGCGAGAATGATGA 59.499 45.455 0.00 0.00 0.00 2.92
3669 3744 3.135348 TCCCAAAGAGCGAGAATGATGAT 59.865 43.478 0.00 0.00 0.00 2.45
3670 3745 4.344968 TCCCAAAGAGCGAGAATGATGATA 59.655 41.667 0.00 0.00 0.00 2.15
3671 3746 4.689812 CCCAAAGAGCGAGAATGATGATAG 59.310 45.833 0.00 0.00 0.00 2.08
3672 3747 4.152045 CCAAAGAGCGAGAATGATGATAGC 59.848 45.833 0.00 0.00 0.00 2.97
3673 3748 4.870123 AAGAGCGAGAATGATGATAGCT 57.130 40.909 0.00 0.00 36.06 3.32
3674 3749 4.439305 AGAGCGAGAATGATGATAGCTC 57.561 45.455 6.45 6.45 46.87 4.09
3675 3750 4.439305 GAGCGAGAATGATGATAGCTCT 57.561 45.455 7.22 0.00 44.18 4.09
3676 3751 4.414852 GAGCGAGAATGATGATAGCTCTC 58.585 47.826 7.22 0.00 44.18 3.20
3677 3752 3.825585 AGCGAGAATGATGATAGCTCTCA 59.174 43.478 4.05 4.05 33.59 3.27
3678 3753 3.919804 GCGAGAATGATGATAGCTCTCAC 59.080 47.826 3.60 0.05 33.59 3.51
3679 3754 4.558296 GCGAGAATGATGATAGCTCTCACA 60.558 45.833 3.60 5.55 33.59 3.58
3680 3755 5.712004 CGAGAATGATGATAGCTCTCACAT 58.288 41.667 3.60 7.47 33.59 3.21
3681 3756 5.801444 CGAGAATGATGATAGCTCTCACATC 59.199 44.000 3.60 9.14 39.35 3.06
3682 3757 6.040209 AGAATGATGATAGCTCTCACATCC 57.960 41.667 3.60 0.00 38.50 3.51
3683 3758 5.781306 AGAATGATGATAGCTCTCACATCCT 59.219 40.000 3.60 1.57 38.50 3.24
3684 3759 6.270463 AGAATGATGATAGCTCTCACATCCTT 59.730 38.462 3.60 7.90 38.50 3.36
3685 3760 7.454066 AGAATGATGATAGCTCTCACATCCTTA 59.546 37.037 3.60 0.00 38.50 2.69
3686 3761 7.736881 ATGATGATAGCTCTCACATCCTTAT 57.263 36.000 3.60 0.00 38.50 1.73
3687 3762 7.167924 TGATGATAGCTCTCACATCCTTATC 57.832 40.000 3.60 0.00 38.50 1.75
3688 3763 5.991933 TGATAGCTCTCACATCCTTATCC 57.008 43.478 0.00 0.00 0.00 2.59
3689 3764 4.460731 TGATAGCTCTCACATCCTTATCCG 59.539 45.833 0.00 0.00 0.00 4.18
3690 3765 1.967066 AGCTCTCACATCCTTATCCGG 59.033 52.381 0.00 0.00 0.00 5.14
3691 3766 1.606737 GCTCTCACATCCTTATCCGGC 60.607 57.143 0.00 0.00 0.00 6.13
3692 3767 1.688735 CTCTCACATCCTTATCCGGCA 59.311 52.381 0.00 0.00 0.00 5.69
3693 3768 2.301296 CTCTCACATCCTTATCCGGCAT 59.699 50.000 0.00 0.00 0.00 4.40
3694 3769 3.506398 TCTCACATCCTTATCCGGCATA 58.494 45.455 0.00 0.00 0.00 3.14
3695 3770 3.258372 TCTCACATCCTTATCCGGCATAC 59.742 47.826 0.00 0.00 0.00 2.39
3696 3771 2.301870 TCACATCCTTATCCGGCATACC 59.698 50.000 0.00 0.00 0.00 2.73
3697 3772 1.628846 ACATCCTTATCCGGCATACCC 59.371 52.381 0.00 0.00 0.00 3.69
3698 3773 1.909302 CATCCTTATCCGGCATACCCT 59.091 52.381 0.00 0.00 0.00 4.34
3699 3774 1.640917 TCCTTATCCGGCATACCCTC 58.359 55.000 0.00 0.00 0.00 4.30
3700 3775 1.132977 TCCTTATCCGGCATACCCTCA 60.133 52.381 0.00 0.00 0.00 3.86
3701 3776 1.697432 CCTTATCCGGCATACCCTCAA 59.303 52.381 0.00 0.00 0.00 3.02
3702 3777 2.305927 CCTTATCCGGCATACCCTCAAT 59.694 50.000 0.00 0.00 0.00 2.57
3703 3778 3.517901 CCTTATCCGGCATACCCTCAATA 59.482 47.826 0.00 0.00 0.00 1.90
3704 3779 4.383118 CCTTATCCGGCATACCCTCAATAG 60.383 50.000 0.00 0.00 0.00 1.73
3705 3780 0.685097 TCCGGCATACCCTCAATAGC 59.315 55.000 0.00 0.00 0.00 2.97
3706 3781 0.321653 CCGGCATACCCTCAATAGCC 60.322 60.000 0.00 0.00 38.73 3.93
3707 3782 0.687354 CGGCATACCCTCAATAGCCT 59.313 55.000 0.00 0.00 39.91 4.58
3708 3783 1.072331 CGGCATACCCTCAATAGCCTT 59.928 52.381 0.00 0.00 39.91 4.35
3709 3784 2.508526 GGCATACCCTCAATAGCCTTG 58.491 52.381 0.00 0.00 39.02 3.61
3710 3785 2.158608 GGCATACCCTCAATAGCCTTGT 60.159 50.000 0.00 0.00 39.02 3.16
3711 3786 3.555966 GCATACCCTCAATAGCCTTGTT 58.444 45.455 0.00 0.00 0.00 2.83
3712 3787 3.316308 GCATACCCTCAATAGCCTTGTTG 59.684 47.826 0.00 0.00 0.00 3.33
3713 3788 4.780815 CATACCCTCAATAGCCTTGTTGA 58.219 43.478 0.00 0.00 33.95 3.18
3714 3789 3.356529 ACCCTCAATAGCCTTGTTGAG 57.643 47.619 10.80 10.80 46.33 3.02
3715 3790 2.019984 CCCTCAATAGCCTTGTTGAGC 58.980 52.381 11.82 0.00 45.77 4.26
3716 3791 2.618816 CCCTCAATAGCCTTGTTGAGCA 60.619 50.000 11.82 0.00 45.77 4.26
3717 3792 2.681848 CCTCAATAGCCTTGTTGAGCAG 59.318 50.000 11.82 0.30 45.77 4.24
3718 3793 2.086869 TCAATAGCCTTGTTGAGCAGC 58.913 47.619 0.00 0.00 31.73 5.25
3719 3794 1.133790 CAATAGCCTTGTTGAGCAGCC 59.866 52.381 0.00 0.00 0.00 4.85
3720 3795 0.329261 ATAGCCTTGTTGAGCAGCCA 59.671 50.000 0.00 0.00 0.00 4.75
3721 3796 0.321919 TAGCCTTGTTGAGCAGCCAG 60.322 55.000 0.00 0.00 0.00 4.85
3722 3797 1.900498 GCCTTGTTGAGCAGCCAGT 60.900 57.895 0.00 0.00 0.00 4.00
3723 3798 1.860484 GCCTTGTTGAGCAGCCAGTC 61.860 60.000 0.00 0.00 0.00 3.51
3724 3799 1.239968 CCTTGTTGAGCAGCCAGTCC 61.240 60.000 0.00 0.00 0.00 3.85
3725 3800 1.572085 CTTGTTGAGCAGCCAGTCCG 61.572 60.000 0.00 0.00 0.00 4.79
3726 3801 2.743928 GTTGAGCAGCCAGTCCGG 60.744 66.667 0.00 0.00 38.11 5.14
3735 3810 2.111043 CCAGTCCGGCAGTGTGTT 59.889 61.111 0.00 0.00 0.00 3.32
3736 3811 2.253758 CCAGTCCGGCAGTGTGTTG 61.254 63.158 0.00 0.00 0.00 3.33
3737 3812 1.523711 CAGTCCGGCAGTGTGTTGT 60.524 57.895 0.00 0.00 0.00 3.32
3738 3813 1.227556 AGTCCGGCAGTGTGTTGTC 60.228 57.895 0.00 0.00 0.00 3.18
3739 3814 2.110213 TCCGGCAGTGTGTTGTCC 59.890 61.111 0.00 0.00 0.00 4.02
3740 3815 3.345808 CCGGCAGTGTGTTGTCCG 61.346 66.667 0.00 0.00 37.44 4.79
3741 3816 3.345808 CGGCAGTGTGTTGTCCGG 61.346 66.667 0.00 0.00 35.53 5.14
3742 3817 2.203153 GGCAGTGTGTTGTCCGGT 60.203 61.111 0.00 0.00 0.00 5.28
3743 3818 2.542907 GGCAGTGTGTTGTCCGGTG 61.543 63.158 0.00 0.00 0.00 4.94
3744 3819 3.022287 CAGTGTGTTGTCCGGTGC 58.978 61.111 0.00 0.00 0.00 5.01
3745 3820 1.817520 CAGTGTGTTGTCCGGTGCA 60.818 57.895 0.00 0.00 0.00 4.57
3746 3821 1.523711 AGTGTGTTGTCCGGTGCAG 60.524 57.895 0.00 0.00 0.00 4.41
3747 3822 2.203139 TGTGTTGTCCGGTGCAGG 60.203 61.111 0.00 0.00 0.00 4.85
3748 3823 2.978010 GTGTTGTCCGGTGCAGGG 60.978 66.667 0.00 0.00 0.00 4.45
3749 3824 4.263572 TGTTGTCCGGTGCAGGGG 62.264 66.667 0.00 0.24 0.00 4.79
3750 3825 4.265056 GTTGTCCGGTGCAGGGGT 62.265 66.667 0.00 0.00 0.00 4.95
3751 3826 3.948719 TTGTCCGGTGCAGGGGTC 61.949 66.667 0.00 0.00 0.00 4.46
3755 3830 4.489771 CCGGTGCAGGGGTCCATC 62.490 72.222 0.00 0.00 0.00 3.51
3756 3831 4.489771 CGGTGCAGGGGTCCATCC 62.490 72.222 0.00 0.00 0.00 3.51
3757 3832 3.017581 GGTGCAGGGGTCCATCCT 61.018 66.667 0.00 0.00 36.25 3.24
3761 3836 2.693864 CAGGGGTCCATCCTGGCT 60.694 66.667 6.33 0.00 45.95 4.75
3762 3837 2.128226 AGGGGTCCATCCTGGCTT 59.872 61.111 0.00 0.00 37.47 4.35
3763 3838 2.276740 GGGGTCCATCCTGGCTTG 59.723 66.667 0.00 0.00 37.47 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
656 657 2.127232 GGCGCCACCTTTATGCCAT 61.127 57.895 24.80 0.00 45.06 4.40
1124 1125 2.353605 CCCCACCAAAATTGACGAATGG 60.354 50.000 0.00 0.00 37.19 3.16
1172 1173 3.756082 TCAAATCCCAAGCTACCCAAT 57.244 42.857 0.00 0.00 0.00 3.16
1434 1435 3.516300 TGGTAGTTCCATCACCAATACGT 59.484 43.478 0.00 0.00 41.93 3.57
1492 1493 0.749454 GCCACCGGCTTCATCATTCT 60.749 55.000 0.00 0.00 46.69 2.40
1940 1941 2.922234 GCCAGCTATCCTGCCCTT 59.078 61.111 0.00 0.00 40.36 3.95
2101 2102 9.559958 CCATAAAGTAACAATCATCAACTGAAC 57.440 33.333 0.00 0.00 37.44 3.18
2799 2803 2.432628 GGGCGTCCGTCTGTTCAG 60.433 66.667 0.00 0.00 0.00 3.02
2825 2829 2.593026 GGGATGAGGAGACGAAGAGAT 58.407 52.381 0.00 0.00 0.00 2.75
2834 2838 1.456919 TAGGGATCGGGATGAGGAGA 58.543 55.000 0.00 0.00 0.00 3.71
2880 2884 2.049802 GTTCTCCGTCGTTCGCCA 60.050 61.111 0.00 0.00 38.35 5.69
2934 2947 2.710902 CGGTCTGGCAGATCGGTCA 61.711 63.158 36.12 3.84 44.61 4.02
2941 2954 2.031012 CAGTTGCGGTCTGGCAGA 59.969 61.111 14.43 14.43 44.94 4.26
2942 2955 3.730761 GCAGTTGCGGTCTGGCAG 61.731 66.667 8.58 8.58 44.94 4.85
2954 2967 8.970859 ACTTGCAGATTATAGATTAAGCAGTT 57.029 30.769 0.00 0.00 31.87 3.16
2960 2973 9.561069 GGGAAGAACTTGCAGATTATAGATTAA 57.439 33.333 8.18 0.00 32.17 1.40
2967 2980 5.136105 GGATGGGAAGAACTTGCAGATTAT 58.864 41.667 8.18 0.00 32.17 1.28
3004 3040 7.445402 ACAATCTAGAGAGCAAGAGAGATAGAC 59.555 40.741 0.00 0.00 0.00 2.59
3008 3044 7.059788 TGTACAATCTAGAGAGCAAGAGAGAT 58.940 38.462 0.00 0.00 0.00 2.75
3016 3052 6.884836 TGTAGAGTTGTACAATCTAGAGAGCA 59.115 38.462 12.26 10.07 29.74 4.26
3106 3176 4.767000 TGTATCCATATCCTCCTGGTCT 57.233 45.455 0.00 0.00 34.03 3.85
3126 3196 5.405269 GGTCATTTCCCTTTCAACGAAAATG 59.595 40.000 0.00 0.00 30.84 2.32
3132 3203 2.351738 GCTGGTCATTTCCCTTTCAACG 60.352 50.000 0.00 0.00 0.00 4.10
3146 3218 3.774766 ACATTACTATCTGGTGCTGGTCA 59.225 43.478 0.00 0.00 0.00 4.02
3225 3300 2.441532 CCGGAGGCGGAGGAGTAA 60.442 66.667 0.00 0.00 46.14 2.24
3336 3411 5.328886 CATGCTATGCGTATTCGAGAAAA 57.671 39.130 0.00 0.00 39.71 2.29
3337 3412 4.972286 CATGCTATGCGTATTCGAGAAA 57.028 40.909 0.00 0.00 39.71 2.52
3350 3425 8.925700 TCTTTAATACAAGATACGCATGCTATG 58.074 33.333 17.13 2.44 0.00 2.23
3351 3426 9.489084 TTCTTTAATACAAGATACGCATGCTAT 57.511 29.630 17.13 12.20 32.69 2.97
3352 3427 8.880878 TTCTTTAATACAAGATACGCATGCTA 57.119 30.769 17.13 7.69 32.69 3.49
3353 3428 7.710907 TCTTCTTTAATACAAGATACGCATGCT 59.289 33.333 17.13 5.50 32.69 3.79
3354 3429 7.851508 TCTTCTTTAATACAAGATACGCATGC 58.148 34.615 7.91 7.91 32.69 4.06
3357 3432 8.879759 CCTTTCTTCTTTAATACAAGATACGCA 58.120 33.333 0.00 0.00 32.69 5.24
3358 3433 8.336080 CCCTTTCTTCTTTAATACAAGATACGC 58.664 37.037 0.00 0.00 32.69 4.42
3359 3434 8.827677 CCCCTTTCTTCTTTAATACAAGATACG 58.172 37.037 0.00 0.00 32.69 3.06
3360 3435 9.682465 ACCCCTTTCTTCTTTAATACAAGATAC 57.318 33.333 0.00 0.00 32.69 2.24
3362 3437 9.682465 GTACCCCTTTCTTCTTTAATACAAGAT 57.318 33.333 0.00 0.00 32.69 2.40
3363 3438 8.662255 TGTACCCCTTTCTTCTTTAATACAAGA 58.338 33.333 0.00 0.00 0.00 3.02
3364 3439 8.857694 TGTACCCCTTTCTTCTTTAATACAAG 57.142 34.615 0.00 0.00 0.00 3.16
3365 3440 9.292195 CTTGTACCCCTTTCTTCTTTAATACAA 57.708 33.333 0.00 0.00 0.00 2.41
3366 3441 7.886446 CCTTGTACCCCTTTCTTCTTTAATACA 59.114 37.037 0.00 0.00 0.00 2.29
3367 3442 8.105197 TCCTTGTACCCCTTTCTTCTTTAATAC 58.895 37.037 0.00 0.00 0.00 1.89
3368 3443 8.105197 GTCCTTGTACCCCTTTCTTCTTTAATA 58.895 37.037 0.00 0.00 0.00 0.98
3369 3444 6.946583 GTCCTTGTACCCCTTTCTTCTTTAAT 59.053 38.462 0.00 0.00 0.00 1.40
3370 3445 6.301486 GTCCTTGTACCCCTTTCTTCTTTAA 58.699 40.000 0.00 0.00 0.00 1.52
3371 3446 5.221986 GGTCCTTGTACCCCTTTCTTCTTTA 60.222 44.000 0.00 0.00 33.02 1.85
3372 3447 4.447325 GGTCCTTGTACCCCTTTCTTCTTT 60.447 45.833 0.00 0.00 33.02 2.52
3373 3448 3.074094 GGTCCTTGTACCCCTTTCTTCTT 59.926 47.826 0.00 0.00 33.02 2.52
3374 3449 2.643304 GGTCCTTGTACCCCTTTCTTCT 59.357 50.000 0.00 0.00 33.02 2.85
3375 3450 3.069079 GGTCCTTGTACCCCTTTCTTC 57.931 52.381 0.00 0.00 33.02 2.87
3384 3459 1.896122 CGGTGGAGGGTCCTTGTACC 61.896 65.000 0.00 0.32 37.46 3.34
3385 3460 1.595357 CGGTGGAGGGTCCTTGTAC 59.405 63.158 0.00 0.00 37.46 2.90
3386 3461 1.611261 CCGGTGGAGGGTCCTTGTA 60.611 63.158 0.00 0.00 37.46 2.41
3387 3462 2.928396 CCGGTGGAGGGTCCTTGT 60.928 66.667 0.00 0.00 37.46 3.16
3388 3463 3.717294 CCCGGTGGAGGGTCCTTG 61.717 72.222 0.00 0.00 46.38 3.61
3395 3470 0.110869 TGTAAAAACCCCGGTGGAGG 59.889 55.000 15.08 4.44 38.00 4.30
3396 3471 1.610038 GTTGTAAAAACCCCGGTGGAG 59.390 52.381 15.08 0.00 38.00 3.86
3397 3472 1.064166 TGTTGTAAAAACCCCGGTGGA 60.064 47.619 15.08 0.00 38.00 4.02
3398 3473 1.067364 GTGTTGTAAAAACCCCGGTGG 59.933 52.381 0.00 3.72 41.37 4.61
3399 3474 1.749634 TGTGTTGTAAAAACCCCGGTG 59.250 47.619 0.00 0.00 31.25 4.94
3400 3475 1.750206 GTGTGTTGTAAAAACCCCGGT 59.250 47.619 0.00 0.00 31.25 5.28
3401 3476 1.067364 GGTGTGTTGTAAAAACCCCGG 59.933 52.381 0.00 0.00 31.25 5.73
3402 3477 1.749634 TGGTGTGTTGTAAAAACCCCG 59.250 47.619 0.00 0.00 31.25 5.73
3403 3478 3.056035 TGTTGGTGTGTTGTAAAAACCCC 60.056 43.478 0.00 0.00 31.25 4.95
3404 3479 3.927758 GTGTTGGTGTGTTGTAAAAACCC 59.072 43.478 0.00 0.00 31.25 4.11
3405 3480 3.927758 GGTGTTGGTGTGTTGTAAAAACC 59.072 43.478 0.00 0.00 31.25 3.27
3406 3481 4.386350 GTGGTGTTGGTGTGTTGTAAAAAC 59.614 41.667 0.00 0.00 33.57 2.43
3407 3482 4.281182 AGTGGTGTTGGTGTGTTGTAAAAA 59.719 37.500 0.00 0.00 0.00 1.94
3408 3483 3.827302 AGTGGTGTTGGTGTGTTGTAAAA 59.173 39.130 0.00 0.00 0.00 1.52
3409 3484 3.191581 CAGTGGTGTTGGTGTGTTGTAAA 59.808 43.478 0.00 0.00 0.00 2.01
3410 3485 2.750166 CAGTGGTGTTGGTGTGTTGTAA 59.250 45.455 0.00 0.00 0.00 2.41
3411 3486 2.027100 TCAGTGGTGTTGGTGTGTTGTA 60.027 45.455 0.00 0.00 0.00 2.41
3412 3487 1.173043 CAGTGGTGTTGGTGTGTTGT 58.827 50.000 0.00 0.00 0.00 3.32
3413 3488 1.401552 CTCAGTGGTGTTGGTGTGTTG 59.598 52.381 0.00 0.00 0.00 3.33
3414 3489 1.681780 CCTCAGTGGTGTTGGTGTGTT 60.682 52.381 0.00 0.00 0.00 3.32
3415 3490 0.107214 CCTCAGTGGTGTTGGTGTGT 60.107 55.000 0.00 0.00 0.00 3.72
3416 3491 0.819259 CCCTCAGTGGTGTTGGTGTG 60.819 60.000 0.00 0.00 0.00 3.82
3417 3492 1.279025 ACCCTCAGTGGTGTTGGTGT 61.279 55.000 0.00 0.00 37.20 4.16
3418 3493 1.531748 ACCCTCAGTGGTGTTGGTG 59.468 57.895 0.00 0.00 37.20 4.17
3419 3494 4.083155 ACCCTCAGTGGTGTTGGT 57.917 55.556 0.00 0.00 37.20 3.67
3428 3503 1.271656 GTGTTACGTAGCACCCTCAGT 59.728 52.381 26.59 0.00 32.18 3.41
3429 3504 1.992170 GTGTTACGTAGCACCCTCAG 58.008 55.000 26.59 0.00 32.18 3.35
3435 3510 1.670967 GGTGAGGGTGTTACGTAGCAC 60.671 57.143 28.27 28.27 36.79 4.40
3436 3511 0.604578 GGTGAGGGTGTTACGTAGCA 59.395 55.000 8.15 8.15 0.00 3.49
3437 3512 0.604578 TGGTGAGGGTGTTACGTAGC 59.395 55.000 2.00 2.00 0.00 3.58
3438 3513 1.067354 GGTGGTGAGGGTGTTACGTAG 60.067 57.143 0.00 0.00 0.00 3.51
3439 3514 0.968405 GGTGGTGAGGGTGTTACGTA 59.032 55.000 0.00 0.00 0.00 3.57
3440 3515 1.750297 GGTGGTGAGGGTGTTACGT 59.250 57.895 0.00 0.00 0.00 3.57
3441 3516 1.373748 CGGTGGTGAGGGTGTTACG 60.374 63.158 0.00 0.00 0.00 3.18
3442 3517 0.968405 TACGGTGGTGAGGGTGTTAC 59.032 55.000 0.00 0.00 0.00 2.50
3443 3518 0.968405 GTACGGTGGTGAGGGTGTTA 59.032 55.000 0.00 0.00 0.00 2.41
3444 3519 1.750297 GTACGGTGGTGAGGGTGTT 59.250 57.895 0.00 0.00 0.00 3.32
3445 3520 2.212110 GGTACGGTGGTGAGGGTGT 61.212 63.158 0.00 0.00 0.00 4.16
3446 3521 2.660802 GGTACGGTGGTGAGGGTG 59.339 66.667 0.00 0.00 0.00 4.61
3447 3522 1.803453 TAGGGTACGGTGGTGAGGGT 61.803 60.000 0.00 0.00 0.00 4.34
3448 3523 1.000739 TAGGGTACGGTGGTGAGGG 59.999 63.158 0.00 0.00 0.00 4.30
3449 3524 0.033796 TCTAGGGTACGGTGGTGAGG 60.034 60.000 0.00 0.00 0.00 3.86
3450 3525 1.101331 GTCTAGGGTACGGTGGTGAG 58.899 60.000 0.00 0.00 0.00 3.51
3451 3526 0.700564 AGTCTAGGGTACGGTGGTGA 59.299 55.000 0.00 0.00 0.00 4.02
3452 3527 2.295885 CTAGTCTAGGGTACGGTGGTG 58.704 57.143 0.00 0.00 0.00 4.17
3453 3528 1.409381 GCTAGTCTAGGGTACGGTGGT 60.409 57.143 8.97 0.00 0.00 4.16
3454 3529 1.133853 AGCTAGTCTAGGGTACGGTGG 60.134 57.143 8.97 0.00 0.00 4.61
3455 3530 2.158784 AGAGCTAGTCTAGGGTACGGTG 60.159 54.545 8.97 0.00 31.71 4.94
3456 3531 2.126057 AGAGCTAGTCTAGGGTACGGT 58.874 52.381 8.97 0.00 31.71 4.83
3457 3532 2.934886 AGAGCTAGTCTAGGGTACGG 57.065 55.000 8.97 0.00 31.71 4.02
3458 3533 3.243704 ACGTAGAGCTAGTCTAGGGTACG 60.244 52.174 18.08 14.34 44.67 3.67
3459 3534 4.039124 AGACGTAGAGCTAGTCTAGGGTAC 59.961 50.000 18.08 12.34 44.67 3.34
3460 3535 4.222336 AGACGTAGAGCTAGTCTAGGGTA 58.778 47.826 18.08 0.00 44.67 3.69
3461 3536 3.040477 AGACGTAGAGCTAGTCTAGGGT 58.960 50.000 18.08 12.26 44.67 4.34
3462 3537 3.656559 GAGACGTAGAGCTAGTCTAGGG 58.343 54.545 18.08 10.26 44.67 3.53
3463 3538 3.243501 ACGAGACGTAGAGCTAGTCTAGG 60.244 52.174 18.11 14.87 44.30 3.02
3464 3539 3.968649 ACGAGACGTAGAGCTAGTCTAG 58.031 50.000 11.87 13.44 44.30 2.43
3465 3540 3.243367 GGACGAGACGTAGAGCTAGTCTA 60.243 52.174 12.62 0.00 44.30 2.59
3466 3541 2.481795 GGACGAGACGTAGAGCTAGTCT 60.482 54.545 11.76 11.76 46.61 3.24
3467 3542 1.860326 GGACGAGACGTAGAGCTAGTC 59.140 57.143 6.67 6.67 41.37 2.59
3468 3543 1.206610 TGGACGAGACGTAGAGCTAGT 59.793 52.381 0.00 0.00 41.37 2.57
3469 3544 1.937278 TGGACGAGACGTAGAGCTAG 58.063 55.000 0.00 0.00 41.37 3.42
3470 3545 2.616634 ATGGACGAGACGTAGAGCTA 57.383 50.000 0.00 0.00 41.37 3.32
3471 3546 2.485903 CTATGGACGAGACGTAGAGCT 58.514 52.381 0.00 0.00 41.37 4.09
3472 3547 1.069771 GCTATGGACGAGACGTAGAGC 60.070 57.143 0.00 0.00 41.37 4.09
3473 3548 1.532007 GGCTATGGACGAGACGTAGAG 59.468 57.143 0.00 0.00 41.37 2.43
3474 3549 1.590932 GGCTATGGACGAGACGTAGA 58.409 55.000 0.00 0.00 41.37 2.59
3475 3550 0.592148 GGGCTATGGACGAGACGTAG 59.408 60.000 0.00 0.00 41.37 3.51
3476 3551 0.107066 TGGGCTATGGACGAGACGTA 60.107 55.000 0.00 0.00 41.37 3.57
3477 3552 1.379443 TGGGCTATGGACGAGACGT 60.379 57.895 0.00 0.00 45.10 4.34
3478 3553 1.065928 GTGGGCTATGGACGAGACG 59.934 63.158 0.00 0.00 0.00 4.18
3479 3554 0.753262 ATGTGGGCTATGGACGAGAC 59.247 55.000 0.00 0.00 0.00 3.36
3480 3555 0.752658 CATGTGGGCTATGGACGAGA 59.247 55.000 0.00 0.00 0.00 4.04
3481 3556 0.465705 ACATGTGGGCTATGGACGAG 59.534 55.000 0.00 0.00 0.00 4.18
3482 3557 0.177836 CACATGTGGGCTATGGACGA 59.822 55.000 18.51 0.00 0.00 4.20
3483 3558 0.177836 TCACATGTGGGCTATGGACG 59.822 55.000 25.16 0.00 0.00 4.79
3484 3559 2.292267 CTTCACATGTGGGCTATGGAC 58.708 52.381 25.16 0.00 0.00 4.02
3485 3560 1.408683 GCTTCACATGTGGGCTATGGA 60.409 52.381 25.16 0.44 0.00 3.41
3486 3561 1.027357 GCTTCACATGTGGGCTATGG 58.973 55.000 25.16 9.01 0.00 2.74
3487 3562 1.674441 CAGCTTCACATGTGGGCTATG 59.326 52.381 31.19 22.61 37.72 2.23
3488 3563 2.020694 GCAGCTTCACATGTGGGCTAT 61.021 52.381 31.19 17.79 37.72 2.97
3489 3564 0.677731 GCAGCTTCACATGTGGGCTA 60.678 55.000 31.19 12.49 37.72 3.93
3490 3565 1.975407 GCAGCTTCACATGTGGGCT 60.975 57.895 28.50 28.50 39.27 5.19
3491 3566 1.930908 GAGCAGCTTCACATGTGGGC 61.931 60.000 25.16 25.64 0.00 5.36
3492 3567 0.607217 TGAGCAGCTTCACATGTGGG 60.607 55.000 25.16 18.26 0.00 4.61
3493 3568 1.241165 TTGAGCAGCTTCACATGTGG 58.759 50.000 25.16 11.60 0.00 4.17
3494 3569 2.551032 TCTTTGAGCAGCTTCACATGTG 59.449 45.455 20.18 20.18 0.00 3.21
3495 3570 2.854963 TCTTTGAGCAGCTTCACATGT 58.145 42.857 0.00 0.00 0.00 3.21
3496 3571 3.366070 CCTTCTTTGAGCAGCTTCACATG 60.366 47.826 0.00 0.00 0.00 3.21
3497 3572 2.818432 CCTTCTTTGAGCAGCTTCACAT 59.182 45.455 0.00 0.00 0.00 3.21
3498 3573 2.158769 TCCTTCTTTGAGCAGCTTCACA 60.159 45.455 0.00 0.00 0.00 3.58
3499 3574 2.498167 TCCTTCTTTGAGCAGCTTCAC 58.502 47.619 0.00 0.00 0.00 3.18
3500 3575 2.936919 TCCTTCTTTGAGCAGCTTCA 57.063 45.000 0.00 0.00 0.00 3.02
3501 3576 2.682352 GGATCCTTCTTTGAGCAGCTTC 59.318 50.000 3.84 0.00 0.00 3.86
3502 3577 2.620108 GGGATCCTTCTTTGAGCAGCTT 60.620 50.000 12.58 0.00 0.00 3.74
3503 3578 1.064832 GGGATCCTTCTTTGAGCAGCT 60.065 52.381 12.58 0.00 0.00 4.24
3504 3579 1.340405 TGGGATCCTTCTTTGAGCAGC 60.340 52.381 12.58 0.00 0.00 5.25
3505 3580 2.795231 TGGGATCCTTCTTTGAGCAG 57.205 50.000 12.58 0.00 0.00 4.24
3506 3581 2.309755 ACATGGGATCCTTCTTTGAGCA 59.690 45.455 12.58 0.00 0.00 4.26
3507 3582 2.948315 GACATGGGATCCTTCTTTGAGC 59.052 50.000 12.58 0.00 0.00 4.26
3508 3583 3.549794 GGACATGGGATCCTTCTTTGAG 58.450 50.000 12.58 0.00 33.03 3.02
3509 3584 2.092968 CGGACATGGGATCCTTCTTTGA 60.093 50.000 12.58 0.00 33.70 2.69
3510 3585 2.292267 CGGACATGGGATCCTTCTTTG 58.708 52.381 12.58 5.19 33.70 2.77
3511 3586 1.916181 ACGGACATGGGATCCTTCTTT 59.084 47.619 12.58 0.00 33.70 2.52
3512 3587 1.486726 GACGGACATGGGATCCTTCTT 59.513 52.381 12.58 0.00 32.93 2.52
3513 3588 1.123928 GACGGACATGGGATCCTTCT 58.876 55.000 12.58 0.00 32.93 2.85
3514 3589 0.106894 GGACGGACATGGGATCCTTC 59.893 60.000 12.58 3.33 34.51 3.46
3515 3590 0.326618 AGGACGGACATGGGATCCTT 60.327 55.000 12.58 0.00 36.33 3.36
3516 3591 0.326618 AAGGACGGACATGGGATCCT 60.327 55.000 12.58 0.75 41.70 3.24
3517 3592 1.420430 TAAGGACGGACATGGGATCC 58.580 55.000 1.92 1.92 0.00 3.36
3518 3593 2.632996 TCATAAGGACGGACATGGGATC 59.367 50.000 0.00 0.00 0.00 3.36
3519 3594 2.634940 CTCATAAGGACGGACATGGGAT 59.365 50.000 0.00 0.00 0.00 3.85
3520 3595 2.039418 CTCATAAGGACGGACATGGGA 58.961 52.381 0.00 0.00 0.00 4.37
3521 3596 1.070758 CCTCATAAGGACGGACATGGG 59.929 57.143 0.00 0.00 46.67 4.00
3522 3597 1.541233 GCCTCATAAGGACGGACATGG 60.541 57.143 0.00 0.00 46.67 3.66
3523 3598 1.541233 GGCCTCATAAGGACGGACATG 60.541 57.143 0.00 0.00 46.67 3.21
3524 3599 0.759346 GGCCTCATAAGGACGGACAT 59.241 55.000 0.00 0.00 46.67 3.06
3525 3600 2.208527 GGCCTCATAAGGACGGACA 58.791 57.895 0.00 0.00 46.67 4.02
3531 3606 1.768684 GATGGCGGGCCTCATAAGGA 61.769 60.000 11.55 0.00 46.67 3.36
3532 3607 1.302832 GATGGCGGGCCTCATAAGG 60.303 63.158 11.55 0.00 46.44 2.69
3533 3608 0.109342 AAGATGGCGGGCCTCATAAG 59.891 55.000 11.55 0.00 36.94 1.73
3534 3609 0.108585 GAAGATGGCGGGCCTCATAA 59.891 55.000 11.55 0.00 36.94 1.90
3535 3610 1.754745 GAAGATGGCGGGCCTCATA 59.245 57.895 11.55 0.00 36.94 2.15
3536 3611 2.512896 GAAGATGGCGGGCCTCAT 59.487 61.111 11.55 5.37 36.94 2.90
3537 3612 3.797353 GGAAGATGGCGGGCCTCA 61.797 66.667 11.55 0.00 36.94 3.86
3538 3613 3.344137 TTGGAAGATGGCGGGCCTC 62.344 63.158 11.55 6.19 36.94 4.70
3539 3614 3.338250 TTGGAAGATGGCGGGCCT 61.338 61.111 11.55 0.00 36.94 5.19
3540 3615 2.830370 CTTGGAAGATGGCGGGCC 60.830 66.667 1.86 1.86 0.00 5.80
3541 3616 1.657751 GAACTTGGAAGATGGCGGGC 61.658 60.000 0.00 0.00 0.00 6.13
3542 3617 0.035056 AGAACTTGGAAGATGGCGGG 60.035 55.000 0.00 0.00 0.00 6.13
3543 3618 2.280628 GTAGAACTTGGAAGATGGCGG 58.719 52.381 0.00 0.00 0.00 6.13
3544 3619 2.280628 GGTAGAACTTGGAAGATGGCG 58.719 52.381 0.00 0.00 0.00 5.69
3545 3620 2.239907 AGGGTAGAACTTGGAAGATGGC 59.760 50.000 0.00 0.00 0.00 4.40
3546 3621 3.519510 TGAGGGTAGAACTTGGAAGATGG 59.480 47.826 0.00 0.00 0.00 3.51
3547 3622 4.467795 TCTGAGGGTAGAACTTGGAAGATG 59.532 45.833 0.00 0.00 0.00 2.90
3548 3623 4.689062 TCTGAGGGTAGAACTTGGAAGAT 58.311 43.478 0.00 0.00 0.00 2.40
3549 3624 4.127918 TCTGAGGGTAGAACTTGGAAGA 57.872 45.455 0.00 0.00 0.00 2.87
3550 3625 4.891992 TTCTGAGGGTAGAACTTGGAAG 57.108 45.455 0.00 0.00 32.02 3.46
3551 3626 4.041691 CCTTTCTGAGGGTAGAACTTGGAA 59.958 45.833 0.00 0.00 42.26 3.53
3552 3627 3.583086 CCTTTCTGAGGGTAGAACTTGGA 59.417 47.826 0.00 0.00 42.26 3.53
3553 3628 3.944087 CCTTTCTGAGGGTAGAACTTGG 58.056 50.000 0.00 0.00 42.26 3.61
3564 3639 7.301553 ACTAGTTCGTAGGTACCTTTCTGAGG 61.302 46.154 22.11 7.38 41.34 3.86
3565 3640 5.647225 ACTAGTTCGTAGGTACCTTTCTGAG 59.353 44.000 22.11 11.40 32.29 3.35
3566 3641 5.564550 ACTAGTTCGTAGGTACCTTTCTGA 58.435 41.667 22.11 10.18 32.29 3.27
3567 3642 5.893897 ACTAGTTCGTAGGTACCTTTCTG 57.106 43.478 22.11 7.85 32.29 3.02
3568 3643 6.907853 AAACTAGTTCGTAGGTACCTTTCT 57.092 37.500 22.11 13.24 32.29 2.52
3569 3644 7.821652 ACTAAACTAGTTCGTAGGTACCTTTC 58.178 38.462 22.11 12.83 34.86 2.62
3570 3645 7.767250 ACTAAACTAGTTCGTAGGTACCTTT 57.233 36.000 22.11 6.56 34.86 3.11
3571 3646 8.863872 TTACTAAACTAGTTCGTAGGTACCTT 57.136 34.615 22.11 2.80 40.14 3.50
3572 3647 8.103935 ACTTACTAAACTAGTTCGTAGGTACCT 58.896 37.037 20.57 20.57 40.14 3.08
3573 3648 8.178313 CACTTACTAAACTAGTTCGTAGGTACC 58.822 40.741 21.58 2.73 40.14 3.34
3574 3649 8.936864 TCACTTACTAAACTAGTTCGTAGGTAC 58.063 37.037 21.58 0.00 40.14 3.34
3575 3650 9.502091 TTCACTTACTAAACTAGTTCGTAGGTA 57.498 33.333 21.58 13.12 40.14 3.08
3576 3651 7.986085 TCACTTACTAAACTAGTTCGTAGGT 57.014 36.000 18.74 18.74 40.14 3.08
3577 3652 7.967303 CCTTCACTTACTAAACTAGTTCGTAGG 59.033 40.741 8.95 14.90 40.14 3.18
3578 3653 7.967303 CCCTTCACTTACTAAACTAGTTCGTAG 59.033 40.741 8.95 10.37 40.14 3.51
3579 3654 7.094205 CCCCTTCACTTACTAAACTAGTTCGTA 60.094 40.741 8.95 10.59 40.14 3.43
3580 3655 6.294955 CCCCTTCACTTACTAAACTAGTTCGT 60.295 42.308 8.95 11.56 40.14 3.85
3581 3656 6.071728 TCCCCTTCACTTACTAAACTAGTTCG 60.072 42.308 8.95 5.98 40.14 3.95
3582 3657 7.039152 ACTCCCCTTCACTTACTAAACTAGTTC 60.039 40.741 8.95 0.00 40.14 3.01
3583 3658 6.786461 ACTCCCCTTCACTTACTAAACTAGTT 59.214 38.462 1.12 1.12 40.14 2.24
3584 3659 6.321321 ACTCCCCTTCACTTACTAAACTAGT 58.679 40.000 0.00 0.00 42.68 2.57
3585 3660 6.127394 GGACTCCCCTTCACTTACTAAACTAG 60.127 46.154 0.00 0.00 0.00 2.57
3586 3661 5.718607 GGACTCCCCTTCACTTACTAAACTA 59.281 44.000 0.00 0.00 0.00 2.24
3587 3662 4.531339 GGACTCCCCTTCACTTACTAAACT 59.469 45.833 0.00 0.00 0.00 2.66
3588 3663 4.829968 GGACTCCCCTTCACTTACTAAAC 58.170 47.826 0.00 0.00 0.00 2.01
3604 3679 1.530013 TTGTCTTCGACGGGGACTCC 61.530 60.000 17.11 0.00 34.95 3.85
3605 3680 0.531200 ATTGTCTTCGACGGGGACTC 59.469 55.000 17.11 0.00 34.95 3.36
3606 3681 0.531200 GATTGTCTTCGACGGGGACT 59.469 55.000 17.11 3.76 34.95 3.85
3607 3682 0.459759 GGATTGTCTTCGACGGGGAC 60.460 60.000 12.00 12.00 34.95 4.46
3608 3683 1.610554 GGGATTGTCTTCGACGGGGA 61.611 60.000 0.00 0.00 34.95 4.81
3609 3684 1.153429 GGGATTGTCTTCGACGGGG 60.153 63.158 0.00 0.00 34.95 5.73
3610 3685 0.178068 ATGGGATTGTCTTCGACGGG 59.822 55.000 0.00 0.00 34.95 5.28
3611 3686 1.665679 CAATGGGATTGTCTTCGACGG 59.334 52.381 0.00 0.00 34.95 4.79
3612 3687 1.062587 GCAATGGGATTGTCTTCGACG 59.937 52.381 0.00 0.00 42.20 5.12
3613 3688 1.062587 CGCAATGGGATTGTCTTCGAC 59.937 52.381 0.00 0.00 42.20 4.20
3614 3689 1.066502 TCGCAATGGGATTGTCTTCGA 60.067 47.619 0.00 0.00 42.20 3.71
3615 3690 1.368641 TCGCAATGGGATTGTCTTCG 58.631 50.000 0.00 0.00 42.20 3.79
3616 3691 2.542411 GCATCGCAATGGGATTGTCTTC 60.542 50.000 10.22 0.00 42.20 2.87
3617 3692 1.406539 GCATCGCAATGGGATTGTCTT 59.593 47.619 10.22 0.00 42.20 3.01
3618 3693 1.027357 GCATCGCAATGGGATTGTCT 58.973 50.000 10.22 0.00 42.20 3.41
3619 3694 1.027357 AGCATCGCAATGGGATTGTC 58.973 50.000 10.22 3.42 42.20 3.18
3620 3695 1.406539 GAAGCATCGCAATGGGATTGT 59.593 47.619 10.22 0.00 42.20 2.71
3621 3696 1.269413 GGAAGCATCGCAATGGGATTG 60.269 52.381 10.22 7.54 43.06 2.67
3622 3697 1.035139 GGAAGCATCGCAATGGGATT 58.965 50.000 10.22 0.00 32.93 3.01
3623 3698 0.106569 TGGAAGCATCGCAATGGGAT 60.107 50.000 7.00 7.00 35.61 3.85
3624 3699 0.323269 TTGGAAGCATCGCAATGGGA 60.323 50.000 1.63 1.63 33.19 4.37
3625 3700 0.531657 TTTGGAAGCATCGCAATGGG 59.468 50.000 0.00 0.00 33.19 4.00
3626 3701 1.917273 CTTTGGAAGCATCGCAATGG 58.083 50.000 0.00 0.00 33.19 3.16
3647 3722 2.501316 TCATCATTCTCGCTCTTTGGGA 59.499 45.455 0.00 0.00 36.19 4.37
3648 3723 2.910199 TCATCATTCTCGCTCTTTGGG 58.090 47.619 0.00 0.00 0.00 4.12
3649 3724 4.152045 GCTATCATCATTCTCGCTCTTTGG 59.848 45.833 0.00 0.00 0.00 3.28
3650 3725 4.989797 AGCTATCATCATTCTCGCTCTTTG 59.010 41.667 0.00 0.00 0.00 2.77
3651 3726 5.212532 AGCTATCATCATTCTCGCTCTTT 57.787 39.130 0.00 0.00 0.00 2.52
3652 3727 4.808558 GAGCTATCATCATTCTCGCTCTT 58.191 43.478 0.00 0.00 39.30 2.85
3653 3728 4.081406 AGAGCTATCATCATTCTCGCTCT 58.919 43.478 5.16 5.16 45.45 4.09
3654 3729 4.082841 TGAGAGCTATCATCATTCTCGCTC 60.083 45.833 7.02 0.00 41.85 5.03
3655 3730 3.825585 TGAGAGCTATCATCATTCTCGCT 59.174 43.478 7.02 0.00 37.65 4.93
3656 3731 3.919804 GTGAGAGCTATCATCATTCTCGC 59.080 47.826 15.19 3.01 37.65 5.03
3657 3732 5.118642 TGTGAGAGCTATCATCATTCTCG 57.881 43.478 15.19 0.00 37.65 4.04
3658 3733 6.071221 AGGATGTGAGAGCTATCATCATTCTC 60.071 42.308 20.14 12.74 38.56 2.87
3659 3734 5.781306 AGGATGTGAGAGCTATCATCATTCT 59.219 40.000 20.14 20.14 38.56 2.40
3660 3735 6.040209 AGGATGTGAGAGCTATCATCATTC 57.960 41.667 15.19 16.67 38.56 2.67
3661 3736 6.436738 AAGGATGTGAGAGCTATCATCATT 57.563 37.500 15.19 9.98 38.56 2.57
3662 3737 7.147689 GGATAAGGATGTGAGAGCTATCATCAT 60.148 40.741 15.19 17.89 38.56 2.45
3663 3738 6.154192 GGATAAGGATGTGAGAGCTATCATCA 59.846 42.308 15.19 14.13 38.56 3.07
3664 3739 6.572519 GGATAAGGATGTGAGAGCTATCATC 58.427 44.000 15.19 8.83 36.81 2.92
3665 3740 5.126869 CGGATAAGGATGTGAGAGCTATCAT 59.873 44.000 15.19 0.00 0.00 2.45
3666 3741 4.460731 CGGATAAGGATGTGAGAGCTATCA 59.539 45.833 7.02 7.02 0.00 2.15
3667 3742 4.142271 CCGGATAAGGATGTGAGAGCTATC 60.142 50.000 0.08 0.08 0.00 2.08
3668 3743 3.766591 CCGGATAAGGATGTGAGAGCTAT 59.233 47.826 0.00 0.00 0.00 2.97
3669 3744 3.157881 CCGGATAAGGATGTGAGAGCTA 58.842 50.000 0.00 0.00 0.00 3.32
3670 3745 1.967066 CCGGATAAGGATGTGAGAGCT 59.033 52.381 0.00 0.00 0.00 4.09
3671 3746 1.606737 GCCGGATAAGGATGTGAGAGC 60.607 57.143 5.05 0.00 0.00 4.09
3672 3747 1.688735 TGCCGGATAAGGATGTGAGAG 59.311 52.381 5.05 0.00 0.00 3.20
3673 3748 1.788229 TGCCGGATAAGGATGTGAGA 58.212 50.000 5.05 0.00 0.00 3.27
3674 3749 2.847327 ATGCCGGATAAGGATGTGAG 57.153 50.000 5.05 0.00 0.00 3.51
3675 3750 2.301870 GGTATGCCGGATAAGGATGTGA 59.698 50.000 5.05 0.00 0.00 3.58
3676 3751 2.615493 GGGTATGCCGGATAAGGATGTG 60.615 54.545 5.05 0.00 34.97 3.21
3677 3752 1.628846 GGGTATGCCGGATAAGGATGT 59.371 52.381 5.05 0.00 34.97 3.06
3678 3753 1.909302 AGGGTATGCCGGATAAGGATG 59.091 52.381 5.05 0.00 34.97 3.51
3679 3754 2.188817 GAGGGTATGCCGGATAAGGAT 58.811 52.381 5.05 0.00 34.97 3.24
3680 3755 1.132977 TGAGGGTATGCCGGATAAGGA 60.133 52.381 5.05 0.00 34.97 3.36
3681 3756 1.348064 TGAGGGTATGCCGGATAAGG 58.652 55.000 5.05 0.00 34.97 2.69
3682 3757 3.703001 ATTGAGGGTATGCCGGATAAG 57.297 47.619 5.05 0.00 34.97 1.73
3683 3758 3.055385 GCTATTGAGGGTATGCCGGATAA 60.055 47.826 5.05 0.00 34.97 1.75
3684 3759 2.500098 GCTATTGAGGGTATGCCGGATA 59.500 50.000 5.05 0.00 34.97 2.59
3685 3760 1.279271 GCTATTGAGGGTATGCCGGAT 59.721 52.381 5.05 0.00 34.97 4.18
3686 3761 0.685097 GCTATTGAGGGTATGCCGGA 59.315 55.000 5.05 0.00 34.97 5.14
3687 3762 0.321653 GGCTATTGAGGGTATGCCGG 60.322 60.000 0.00 0.00 34.97 6.13
3688 3763 0.687354 AGGCTATTGAGGGTATGCCG 59.313 55.000 0.00 0.00 44.42 5.69
3689 3764 2.158608 ACAAGGCTATTGAGGGTATGCC 60.159 50.000 8.84 0.00 40.54 4.40
3690 3765 3.214696 ACAAGGCTATTGAGGGTATGC 57.785 47.619 8.84 0.00 0.00 3.14
3691 3766 4.780815 TCAACAAGGCTATTGAGGGTATG 58.219 43.478 9.43 0.00 31.29 2.39
3692 3767 5.041191 CTCAACAAGGCTATTGAGGGTAT 57.959 43.478 24.00 0.00 45.35 2.73
3693 3768 4.487714 CTCAACAAGGCTATTGAGGGTA 57.512 45.455 24.00 2.89 45.35 3.69
3694 3769 3.356529 CTCAACAAGGCTATTGAGGGT 57.643 47.619 24.00 0.00 45.35 4.34
3698 3773 2.086869 GCTGCTCAACAAGGCTATTGA 58.913 47.619 12.16 12.16 33.82 2.57
3699 3774 1.133790 GGCTGCTCAACAAGGCTATTG 59.866 52.381 0.00 5.30 0.00 1.90
3700 3775 1.272092 TGGCTGCTCAACAAGGCTATT 60.272 47.619 0.00 0.00 0.00 1.73
3701 3776 0.329261 TGGCTGCTCAACAAGGCTAT 59.671 50.000 0.00 0.00 0.00 2.97
3702 3777 0.321919 CTGGCTGCTCAACAAGGCTA 60.322 55.000 0.00 0.00 0.00 3.93
3703 3778 1.602888 CTGGCTGCTCAACAAGGCT 60.603 57.895 0.00 0.00 0.00 4.58
3704 3779 1.860484 GACTGGCTGCTCAACAAGGC 61.860 60.000 0.00 0.00 0.00 4.35
3705 3780 1.239968 GGACTGGCTGCTCAACAAGG 61.240 60.000 0.00 0.00 0.00 3.61
3706 3781 1.572085 CGGACTGGCTGCTCAACAAG 61.572 60.000 0.00 0.00 0.00 3.16
3707 3782 1.597854 CGGACTGGCTGCTCAACAA 60.598 57.895 0.00 0.00 0.00 2.83
3708 3783 2.031012 CGGACTGGCTGCTCAACA 59.969 61.111 0.00 0.00 0.00 3.33
3709 3784 2.743928 CCGGACTGGCTGCTCAAC 60.744 66.667 0.00 0.00 0.00 3.18
3718 3793 2.111043 AACACACTGCCGGACTGG 59.889 61.111 5.05 0.00 42.50 4.00
3719 3794 1.498865 GACAACACACTGCCGGACTG 61.499 60.000 5.05 3.14 0.00 3.51
3720 3795 1.227556 GACAACACACTGCCGGACT 60.228 57.895 5.05 0.00 0.00 3.85
3721 3796 2.251642 GGACAACACACTGCCGGAC 61.252 63.158 5.05 0.00 0.00 4.79
3722 3797 2.110213 GGACAACACACTGCCGGA 59.890 61.111 5.05 0.00 0.00 5.14
3723 3798 3.345808 CGGACAACACACTGCCGG 61.346 66.667 0.00 0.00 38.40 6.13
3724 3799 3.345808 CCGGACAACACACTGCCG 61.346 66.667 0.00 0.00 41.53 5.69
3725 3800 2.203153 ACCGGACAACACACTGCC 60.203 61.111 9.46 0.00 0.00 4.85
3726 3801 3.022287 CACCGGACAACACACTGC 58.978 61.111 9.46 0.00 0.00 4.40
3727 3802 1.775039 CTGCACCGGACAACACACTG 61.775 60.000 9.46 0.00 0.00 3.66
3728 3803 1.523711 CTGCACCGGACAACACACT 60.524 57.895 9.46 0.00 0.00 3.55
3729 3804 2.542907 CCTGCACCGGACAACACAC 61.543 63.158 9.46 0.00 0.00 3.82
3730 3805 2.203139 CCTGCACCGGACAACACA 60.203 61.111 9.46 0.00 0.00 3.72
3731 3806 2.978010 CCCTGCACCGGACAACAC 60.978 66.667 9.46 0.00 0.00 3.32
3732 3807 4.263572 CCCCTGCACCGGACAACA 62.264 66.667 9.46 0.00 0.00 3.33
3733 3808 4.265056 ACCCCTGCACCGGACAAC 62.265 66.667 9.46 0.00 0.00 3.32
3734 3809 3.948719 GACCCCTGCACCGGACAA 61.949 66.667 9.46 0.00 0.00 3.18
3738 3813 4.489771 GATGGACCCCTGCACCGG 62.490 72.222 0.00 0.00 0.00 5.28
3739 3814 4.489771 GGATGGACCCCTGCACCG 62.490 72.222 0.00 0.00 0.00 4.94
3740 3815 3.017581 AGGATGGACCCCTGCACC 61.018 66.667 0.00 0.00 40.05 5.01
3741 3816 2.273449 CAGGATGGACCCCTGCAC 59.727 66.667 4.06 0.00 43.93 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.