Multiple sequence alignment - TraesCS3A01G360400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G360400 chr3A 100.000 4934 0 0 1 4934 608198312 608193379 0.000000e+00 9112.0
1 TraesCS3A01G360400 chr3A 88.446 251 26 3 1555 1805 608347931 608347684 2.890000e-77 300.0
2 TraesCS3A01G360400 chr3A 100.000 40 0 0 1 40 31552134 31552095 1.900000e-09 75.0
3 TraesCS3A01G360400 chr3A 100.000 40 0 0 1 40 31557442 31557403 1.900000e-09 75.0
4 TraesCS3A01G360400 chr3A 100.000 40 0 0 1 40 608203627 608203588 1.900000e-09 75.0
5 TraesCS3A01G360400 chr3D 91.681 2320 125 39 1853 4144 464809643 464807364 0.000000e+00 3153.0
6 TraesCS3A01G360400 chr3D 92.385 1589 56 15 313 1853 464811248 464809677 0.000000e+00 2204.0
7 TraesCS3A01G360400 chr3D 87.184 554 25 16 4391 4902 464805267 464804718 5.500000e-164 588.0
8 TraesCS3A01G360400 chr3D 92.887 239 14 2 48 286 464811484 464811249 1.310000e-90 344.0
9 TraesCS3A01G360400 chr3D 89.243 251 24 3 1555 1805 465027713 465027466 1.330000e-80 311.0
10 TraesCS3A01G360400 chr3B 92.779 1925 96 22 2134 4036 618156177 618154274 0.000000e+00 2745.0
11 TraesCS3A01G360400 chr3B 89.411 2087 98 45 47 2054 618158324 618156282 0.000000e+00 2516.0
12 TraesCS3A01G360400 chr3B 85.487 503 33 11 4454 4934 618153223 618152739 5.740000e-134 488.0
13 TraesCS3A01G360400 chr3B 77.867 497 87 18 1555 2039 618442741 618442256 2.250000e-73 287.0
14 TraesCS3A01G360400 chr7D 84.315 1205 165 18 2555 3751 149181890 149183078 0.000000e+00 1157.0
15 TraesCS3A01G360400 chr7D 83.917 1200 178 10 2557 3751 149085145 149083956 0.000000e+00 1133.0
16 TraesCS3A01G360400 chr7D 89.200 250 24 3 1555 1804 149181430 149181676 4.800000e-80 309.0
17 TraesCS3A01G360400 chr7D 88.430 242 28 0 1555 1796 149085623 149085382 4.830000e-75 292.0
18 TraesCS3A01G360400 chr7D 86.335 161 22 0 1264 1424 149181275 149181435 5.080000e-40 176.0
19 TraesCS3A01G360400 chr7A 83.709 1197 180 11 2558 3751 149862101 149860917 0.000000e+00 1116.0
20 TraesCS3A01G360400 chr7A 86.970 990 125 2 2551 3536 150022493 150023482 0.000000e+00 1110.0
21 TraesCS3A01G360400 chr7A 86.000 250 32 1 1555 1804 150022026 150022272 1.050000e-66 265.0
22 TraesCS3A01G360400 chr7A 93.269 104 7 0 4251 4354 507818065 507817962 2.380000e-33 154.0
23 TraesCS3A01G360400 chr7A 94.444 36 2 0 4358 4393 507817976 507817941 6.900000e-04 56.5
24 TraesCS3A01G360400 chr7B 86.660 982 128 1 2558 3536 111943059 111944040 0.000000e+00 1085.0
25 TraesCS3A01G360400 chr7B 90.000 230 23 0 1555 1784 111942603 111942832 1.040000e-76 298.0
26 TraesCS3A01G360400 chr7B 86.420 162 22 0 1263 1424 111942447 111942608 1.410000e-40 178.0
27 TraesCS3A01G360400 chr2D 81.856 1207 195 20 2556 3751 165484726 165483533 0.000000e+00 994.0
28 TraesCS3A01G360400 chr2D 88.272 162 19 0 1263 1424 165485367 165485206 1.400000e-45 195.0
29 TraesCS3A01G360400 chr2D 88.356 146 17 0 1263 1408 165333627 165333772 5.080000e-40 176.0
30 TraesCS3A01G360400 chr2B 81.561 1204 200 18 2557 3751 232290701 232289511 0.000000e+00 974.0
31 TraesCS3A01G360400 chr2B 83.333 132 16 5 3620 3751 232264293 232264418 3.120000e-22 117.0
32 TraesCS3A01G360400 chr5B 89.571 163 15 2 1263 1424 679311136 679311297 6.470000e-49 206.0
33 TraesCS3A01G360400 chr5D 88.272 162 19 0 1263 1424 538255177 538255338 1.400000e-45 195.0
34 TraesCS3A01G360400 chr2A 87.654 162 20 0 1263 1424 185264916 185265077 6.520000e-44 189.0
35 TraesCS3A01G360400 chr5A 92.208 77 6 0 4262 4338 573087145 573087221 5.220000e-20 110.0
36 TraesCS3A01G360400 chr6B 100.000 40 0 0 1 40 188474112 188474073 1.900000e-09 75.0
37 TraesCS3A01G360400 chr6B 100.000 40 0 0 1 40 188489628 188489589 1.900000e-09 75.0
38 TraesCS3A01G360400 chr6B 100.000 40 0 0 1 40 643538332 643538293 1.900000e-09 75.0
39 TraesCS3A01G360400 chr6B 100.000 40 0 0 1 40 643543639 643543600 1.900000e-09 75.0
40 TraesCS3A01G360400 chr4A 100.000 40 0 0 1 40 292116140 292116179 1.900000e-09 75.0
41 TraesCS3A01G360400 chr4A 100.000 40 0 0 1 40 292121450 292121489 1.900000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G360400 chr3A 608193379 608198312 4933 True 9112.000000 9112 100.000000 1 4934 1 chr3A.!!$R3 4933
1 TraesCS3A01G360400 chr3D 464804718 464811484 6766 True 1572.250000 3153 91.034250 48 4902 4 chr3D.!!$R2 4854
2 TraesCS3A01G360400 chr3B 618152739 618158324 5585 True 1916.333333 2745 89.225667 47 4934 3 chr3B.!!$R2 4887
3 TraesCS3A01G360400 chr7D 149083956 149085623 1667 True 712.500000 1133 86.173500 1555 3751 2 chr7D.!!$R1 2196
4 TraesCS3A01G360400 chr7D 149181275 149183078 1803 False 547.333333 1157 86.616667 1264 3751 3 chr7D.!!$F1 2487
5 TraesCS3A01G360400 chr7A 149860917 149862101 1184 True 1116.000000 1116 83.709000 2558 3751 1 chr7A.!!$R1 1193
6 TraesCS3A01G360400 chr7A 150022026 150023482 1456 False 687.500000 1110 86.485000 1555 3536 2 chr7A.!!$F1 1981
7 TraesCS3A01G360400 chr7B 111942447 111944040 1593 False 520.333333 1085 87.693333 1263 3536 3 chr7B.!!$F1 2273
8 TraesCS3A01G360400 chr2D 165483533 165485367 1834 True 594.500000 994 85.064000 1263 3751 2 chr2D.!!$R1 2488
9 TraesCS3A01G360400 chr2B 232289511 232290701 1190 True 974.000000 974 81.561000 2557 3751 1 chr2B.!!$R1 1194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
898 921 0.098728 GGCTTGACACACACACACAC 59.901 55.0 0.0 0.0 0.00 3.82 F
1844 1910 0.035317 TGTTGCTGCTGGTCGAGATT 59.965 50.0 0.0 0.0 0.00 2.40 F
2059 2163 0.240145 GCGTTTTACCCAGCCTGTTC 59.760 55.0 0.0 0.0 0.00 3.18 F
3598 3793 0.664761 ATATTCATGTGTGCCGCTGC 59.335 50.0 0.0 0.0 38.26 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2636 2810 0.322546 GGTTGGCCACGGAGAAGAAT 60.323 55.000 3.88 0.00 34.09 2.40 R
3641 3856 0.107643 TCGTGTGCACCTCCAAATGA 59.892 50.000 15.69 2.15 0.00 2.57 R
3788 4003 2.164219 GGCGAGCAAATCAAAATGAGGA 59.836 45.455 0.00 0.00 0.00 3.71 R
4554 6799 0.109597 TTTCGCCTAGTCGTTCGTCC 60.110 55.000 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.947669 GATTACAATACGTACAAGTCTATGAGT 57.052 33.333 0.00 0.00 0.00 3.41
34 35 9.947669 ATTACAATACGTACAAGTCTATGAGTC 57.052 33.333 0.00 0.00 0.00 3.36
35 36 7.627298 ACAATACGTACAAGTCTATGAGTCT 57.373 36.000 0.00 0.00 0.00 3.24
36 37 8.728337 ACAATACGTACAAGTCTATGAGTCTA 57.272 34.615 0.00 0.00 0.00 2.59
37 38 9.170734 ACAATACGTACAAGTCTATGAGTCTAA 57.829 33.333 0.00 0.00 0.00 2.10
38 39 9.435802 CAATACGTACAAGTCTATGAGTCTAAC 57.564 37.037 0.00 0.00 0.00 2.34
39 40 8.728337 ATACGTACAAGTCTATGAGTCTAACA 57.272 34.615 0.00 0.00 0.00 2.41
40 41 7.444629 ACGTACAAGTCTATGAGTCTAACAA 57.555 36.000 0.00 0.00 0.00 2.83
41 42 8.053026 ACGTACAAGTCTATGAGTCTAACAAT 57.947 34.615 0.00 0.00 0.00 2.71
42 43 7.968956 ACGTACAAGTCTATGAGTCTAACAATG 59.031 37.037 0.00 0.00 0.00 2.82
43 44 7.968956 CGTACAAGTCTATGAGTCTAACAATGT 59.031 37.037 0.00 0.00 0.00 2.71
44 45 9.077674 GTACAAGTCTATGAGTCTAACAATGTG 57.922 37.037 0.00 0.00 0.00 3.21
45 46 7.099764 ACAAGTCTATGAGTCTAACAATGTGG 58.900 38.462 0.00 0.00 0.00 4.17
81 82 2.604914 ACGCTATTGACAAATCAGCTCG 59.395 45.455 14.28 6.00 35.83 5.03
91 92 5.186996 ACAAATCAGCTCGTGTTGAATTT 57.813 34.783 8.09 6.92 37.00 1.82
177 178 8.331740 AGCTATATTATGCCATGATTACACCTT 58.668 33.333 0.00 0.00 0.00 3.50
178 179 9.613428 GCTATATTATGCCATGATTACACCTTA 57.387 33.333 0.00 0.00 0.00 2.69
213 214 1.932604 GCAACTGGTCTGTCAGTCTCG 60.933 57.143 0.00 0.00 46.17 4.04
241 242 6.558488 TTTTCTTTTGCCCCATAATGCTAT 57.442 33.333 0.00 0.00 0.00 2.97
250 251 3.245016 CCCCATAATGCTATTGCCTCTCA 60.245 47.826 0.00 0.00 38.71 3.27
262 263 6.207025 GCTATTGCCTCTCAGAATTCATCAAT 59.793 38.462 8.44 8.16 0.00 2.57
263 264 6.636562 ATTGCCTCTCAGAATTCATCAATC 57.363 37.500 8.44 0.00 0.00 2.67
298 299 6.428159 ACTCAGCAAGAAATAACCAAGTACAG 59.572 38.462 0.00 0.00 0.00 2.74
451 456 2.577593 CCGTCGTTCTTCCCTCCC 59.422 66.667 0.00 0.00 0.00 4.30
452 457 1.982938 CCGTCGTTCTTCCCTCCCT 60.983 63.158 0.00 0.00 0.00 4.20
453 458 1.511768 CGTCGTTCTTCCCTCCCTC 59.488 63.158 0.00 0.00 0.00 4.30
454 459 1.898885 GTCGTTCTTCCCTCCCTCC 59.101 63.158 0.00 0.00 0.00 4.30
455 460 1.681327 TCGTTCTTCCCTCCCTCCG 60.681 63.158 0.00 0.00 0.00 4.63
485 490 2.853731 TTTACCACGGCAACAACTTG 57.146 45.000 0.00 0.00 0.00 3.16
556 575 2.255172 ACCGGATTTGAAACGCGCA 61.255 52.632 9.46 0.00 0.00 6.09
566 585 2.796020 GAAACGCGCACGCTGTAGTG 62.796 60.000 13.70 0.00 45.53 2.74
611 630 5.351458 CAGATCAAACCACTGTCGATGATA 58.649 41.667 0.00 0.00 0.00 2.15
666 685 4.096231 TGGTCAAAAACAGATGGATATGCG 59.904 41.667 0.00 0.00 0.00 4.73
756 779 4.637489 CTCCATCGAGCTCCGGCG 62.637 72.222 8.47 0.00 44.37 6.46
895 918 1.817520 CCGGCTTGACACACACACA 60.818 57.895 0.00 0.00 0.00 3.72
896 919 1.351707 CGGCTTGACACACACACAC 59.648 57.895 0.00 0.00 0.00 3.82
897 920 1.365368 CGGCTTGACACACACACACA 61.365 55.000 0.00 0.00 0.00 3.72
898 921 0.098728 GGCTTGACACACACACACAC 59.901 55.000 0.00 0.00 0.00 3.82
899 922 0.801872 GCTTGACACACACACACACA 59.198 50.000 0.00 0.00 0.00 3.72
900 923 1.465689 GCTTGACACACACACACACAC 60.466 52.381 0.00 0.00 0.00 3.82
973 1000 1.222936 CTGCATCCTCACCTGGTCC 59.777 63.158 0.00 0.00 0.00 4.46
986 1013 0.324183 CTGGTCCTCTGCTCTCTCCA 60.324 60.000 0.00 0.00 0.00 3.86
1012 1045 6.597672 CGAGAGCTCAAGACCATATATAGAGT 59.402 42.308 17.77 0.00 0.00 3.24
1020 1053 5.205056 AGACCATATATAGAGTGGCTAGCC 58.795 45.833 27.71 27.71 36.47 3.93
1060 1105 2.699160 ACCATGGCCATGACTATCTCT 58.301 47.619 41.32 13.67 41.20 3.10
1066 1111 1.606737 GCCATGACTATCTCTTCCGGC 60.607 57.143 0.00 0.00 0.00 6.13
1085 1130 0.455410 CCTTCACTGCTCTCTCCTCG 59.545 60.000 0.00 0.00 0.00 4.63
1090 1135 2.283173 TGCTCTCTCCTCGTGGCA 60.283 61.111 0.00 0.00 0.00 4.92
1091 1136 2.282147 CTGCTCTCTCCTCGTGGCAG 62.282 65.000 0.00 0.00 40.52 4.85
1151 1196 3.807622 CCGGCACTACGATTTCAATGTAT 59.192 43.478 0.00 0.00 35.47 2.29
1181 1232 3.007290 TCCAATAGCTAGCTAGTGCATGG 59.993 47.826 35.51 28.89 41.55 3.66
1424 1475 2.565391 ACATGTCAATCCACTGGTACGA 59.435 45.455 0.00 0.00 0.00 3.43
1425 1476 2.736144 TGTCAATCCACTGGTACGAC 57.264 50.000 0.00 1.40 0.00 4.34
1427 1478 0.899720 TCAATCCACTGGTACGACCC 59.100 55.000 0.00 0.00 37.50 4.46
1446 1497 1.537889 ACCGACCCACATTCCCTGA 60.538 57.895 0.00 0.00 0.00 3.86
1451 1502 2.814097 CGACCCACATTCCCTGACTTTT 60.814 50.000 0.00 0.00 0.00 2.27
1490 1553 4.373116 TCGCCGGAGCAGACAACC 62.373 66.667 5.05 0.00 39.83 3.77
1498 1561 0.741221 GAGCAGACAACCCGACCATC 60.741 60.000 0.00 0.00 0.00 3.51
1636 1699 1.144936 GATCCAGAAGGGCCAGACG 59.855 63.158 6.18 0.00 36.21 4.18
1817 1883 4.687215 TCGGTCAGTGCTGCTGCC 62.687 66.667 13.47 4.62 44.66 4.85
1826 1892 1.067142 AGTGCTGCTGCCATTGAAATG 60.067 47.619 13.47 0.00 38.71 2.32
1844 1910 0.035317 TGTTGCTGCTGGTCGAGATT 59.965 50.000 0.00 0.00 0.00 2.40
2025 2129 2.344950 CTCTACAACTGCTCTGCCAAG 58.655 52.381 0.00 0.00 0.00 3.61
2033 2137 1.741770 GCTCTGCCAAGGGTACGTG 60.742 63.158 0.00 0.00 0.00 4.49
2054 2158 2.566529 GCTGCGTTTTACCCAGCC 59.433 61.111 5.40 0.00 44.60 4.85
2056 2160 1.875963 CTGCGTTTTACCCAGCCTG 59.124 57.895 0.00 0.00 0.00 4.85
2059 2163 0.240145 GCGTTTTACCCAGCCTGTTC 59.760 55.000 0.00 0.00 0.00 3.18
2062 2166 2.095263 CGTTTTACCCAGCCTGTTCATG 60.095 50.000 0.00 0.00 0.00 3.07
2077 2226 3.831333 TGTTCATGGCCTGCAGAAATTTA 59.169 39.130 17.39 0.00 0.00 1.40
2078 2227 4.176271 GTTCATGGCCTGCAGAAATTTAC 58.824 43.478 17.39 1.17 0.00 2.01
2098 2247 2.135139 CTGTGCAAAACGTAGAGCTGA 58.865 47.619 0.00 0.00 0.00 4.26
2111 2269 6.159988 ACGTAGAGCTGATATGAAAATAGCC 58.840 40.000 0.00 0.00 35.05 3.93
2117 2275 7.013083 AGAGCTGATATGAAAATAGCCAAACAG 59.987 37.037 0.00 0.00 35.05 3.16
2119 2277 7.504911 AGCTGATATGAAAATAGCCAAACAGAT 59.495 33.333 0.00 0.00 35.05 2.90
2195 2365 5.509716 TGTACTGACGTAATCACCATAGG 57.490 43.478 0.00 0.00 32.37 2.57
2215 2385 1.338389 GCAAGTACGCCAGGAGGTTTA 60.338 52.381 0.00 0.00 37.19 2.01
2233 2403 6.521162 AGGTTTACCAATCAAAATCACCAAC 58.479 36.000 1.13 0.00 38.89 3.77
2234 2404 5.404066 GGTTTACCAATCAAAATCACCAACG 59.596 40.000 0.00 0.00 35.64 4.10
2235 2405 6.210078 GTTTACCAATCAAAATCACCAACGA 58.790 36.000 0.00 0.00 0.00 3.85
2236 2406 4.927978 ACCAATCAAAATCACCAACGAA 57.072 36.364 0.00 0.00 0.00 3.85
2248 2418 1.531149 ACCAACGAAAAGTGCATCGAG 59.469 47.619 13.96 6.15 41.43 4.04
2413 2583 3.204827 CTGGCCCGTGCTATGTGC 61.205 66.667 0.00 0.00 43.25 4.57
2438 2608 4.663636 ACAAAACATTAGCTACGCACTC 57.336 40.909 0.00 0.00 0.00 3.51
2459 2629 1.349688 ACGCTACACCTTGGAATTGGA 59.650 47.619 0.00 0.00 0.00 3.53
2460 2630 1.737793 CGCTACACCTTGGAATTGGAC 59.262 52.381 0.00 0.00 0.00 4.02
2498 2668 8.529424 TTTCGGTCCTAGATAGATTCTGTAAA 57.471 34.615 0.00 0.00 35.79 2.01
2500 2670 8.707796 TCGGTCCTAGATAGATTCTGTAAAAT 57.292 34.615 0.00 0.00 35.79 1.82
2502 2672 9.843334 CGGTCCTAGATAGATTCTGTAAAATAC 57.157 37.037 0.00 0.00 35.79 1.89
2517 2687 9.603298 TCTGTAAAATACTACATACGCTAATCG 57.397 33.333 0.00 0.00 36.36 3.34
2573 2747 1.136141 CATGCAGACACGTTCAAGCTC 60.136 52.381 0.00 0.00 0.00 4.09
2708 2882 2.390599 CGTCATGCCCTTCACCGTG 61.391 63.158 0.00 0.00 0.00 4.94
3050 3224 1.002087 AGGCGGTTCTTCTTCACGATT 59.998 47.619 0.00 0.00 0.00 3.34
3086 3260 1.617804 CCATGCCCCAAGAACATGACT 60.618 52.381 0.00 0.00 43.04 3.41
3149 3326 3.827898 GTCTCCCTCGTGCTCCCG 61.828 72.222 0.00 0.00 0.00 5.14
3154 3331 3.461773 CCTCGTGCTCCCGTCCAT 61.462 66.667 0.00 0.00 0.00 3.41
3539 3716 1.607148 GCTGACAACCCAGGTAAACAC 59.393 52.381 0.00 0.00 34.82 3.32
3555 3750 6.482308 AGGTAAACACGATTCTATACAATGCC 59.518 38.462 0.00 0.00 0.00 4.40
3568 3763 8.270137 TCTATACAATGCCCTAAGAACCAATA 57.730 34.615 0.00 0.00 0.00 1.90
3571 3766 8.782137 ATACAATGCCCTAAGAACCAATAAAT 57.218 30.769 0.00 0.00 0.00 1.40
3595 3790 2.032549 GTGAGATATTCATGTGTGCCGC 60.033 50.000 0.00 0.00 38.29 6.53
3598 3793 0.664761 ATATTCATGTGTGCCGCTGC 59.335 50.000 0.00 0.00 38.26 5.25
3600 3795 1.929806 ATTCATGTGTGCCGCTGCTG 61.930 55.000 0.70 0.00 38.71 4.41
3610 3805 1.781025 GCCGCTGCTGTTGTTGTGTA 61.781 55.000 0.00 0.00 33.53 2.90
3641 3856 3.444742 CAGGTGTATGGTTCATGCATTGT 59.555 43.478 0.00 0.00 38.56 2.71
3788 4003 2.417243 GGCTGATGTTTAATTTGCGCCT 60.417 45.455 4.18 0.00 32.53 5.52
3803 4018 2.094597 TGCGCCTCCTCATTTTGATTTG 60.095 45.455 4.18 0.00 0.00 2.32
3890 4105 7.198306 TGACTTTCTTACGATTCTTTTTCCC 57.802 36.000 0.00 0.00 0.00 3.97
3891 4106 6.768861 TGACTTTCTTACGATTCTTTTTCCCA 59.231 34.615 0.00 0.00 0.00 4.37
3892 4107 7.447238 TGACTTTCTTACGATTCTTTTTCCCAT 59.553 33.333 0.00 0.00 0.00 4.00
3893 4108 8.178313 ACTTTCTTACGATTCTTTTTCCCATT 57.822 30.769 0.00 0.00 0.00 3.16
3924 4140 7.068593 TCACCACTTTCTGATGAAGATGTTTTT 59.931 33.333 0.00 0.00 33.93 1.94
3961 4177 2.702898 TGATGTGAACAATTGCACGG 57.297 45.000 5.05 0.00 37.83 4.94
3971 4187 5.047731 TGAACAATTGCACGGGAAAATATCA 60.048 36.000 5.05 0.00 0.00 2.15
4046 4265 0.250338 AGCCCAACTGAGAACCGTTC 60.250 55.000 2.81 2.81 0.00 3.95
4081 4302 1.066303 TGGTGGATGTTTGAACGTTGC 59.934 47.619 5.00 0.00 0.00 4.17
4091 4312 3.416490 AACGTTGCACGGTCCAAG 58.584 55.556 0.00 0.00 36.37 3.61
4111 4332 4.683334 GCGTGCAAGCCCGTGAAC 62.683 66.667 14.16 0.00 0.00 3.18
4120 4341 1.971695 GCCCGTGAACCAGGAAAGG 60.972 63.158 0.00 0.00 0.00 3.11
4123 4344 0.889186 CCGTGAACCAGGAAAGGTGG 60.889 60.000 0.00 0.00 42.25 4.61
4126 4347 1.360393 TGAACCAGGAAAGGTGGGCT 61.360 55.000 0.00 0.00 42.25 5.19
4132 4353 2.092914 CCAGGAAAGGTGGGCTTAGTAG 60.093 54.545 0.00 0.00 0.00 2.57
4133 4354 2.572104 CAGGAAAGGTGGGCTTAGTAGT 59.428 50.000 0.00 0.00 0.00 2.73
4134 4355 3.773119 CAGGAAAGGTGGGCTTAGTAGTA 59.227 47.826 0.00 0.00 0.00 1.82
4135 4356 3.773667 AGGAAAGGTGGGCTTAGTAGTAC 59.226 47.826 0.00 0.00 0.00 2.73
4137 4358 4.163649 GGAAAGGTGGGCTTAGTAGTACAT 59.836 45.833 2.52 0.00 0.00 2.29
4138 4359 5.338953 GGAAAGGTGGGCTTAGTAGTACATT 60.339 44.000 2.52 0.00 0.00 2.71
4139 4360 6.126968 GGAAAGGTGGGCTTAGTAGTACATTA 60.127 42.308 2.52 0.00 0.00 1.90
4140 4361 6.481434 AAGGTGGGCTTAGTAGTACATTAG 57.519 41.667 2.52 0.00 0.00 1.73
4141 4362 5.774179 AGGTGGGCTTAGTAGTACATTAGA 58.226 41.667 2.52 0.00 0.00 2.10
4145 4366 4.796369 GGCTTAGTAGTACATTAGAGCCG 58.204 47.826 11.97 0.00 39.03 5.52
4148 4369 6.294620 GGCTTAGTAGTACATTAGAGCCGATT 60.295 42.308 11.97 0.00 39.03 3.34
4149 4370 6.802834 GCTTAGTAGTACATTAGAGCCGATTC 59.197 42.308 2.52 0.00 0.00 2.52
4150 4371 7.308710 GCTTAGTAGTACATTAGAGCCGATTCT 60.309 40.741 2.52 0.00 0.00 2.40
4154 4375 8.910944 AGTAGTACATTAGAGCCGATTCTAAAA 58.089 33.333 2.52 1.19 41.55 1.52
4155 4376 9.525409 GTAGTACATTAGAGCCGATTCTAAAAA 57.475 33.333 11.07 0.93 41.55 1.94
4203 6447 7.683746 ACAAAATTACATTGAAACTGTTGTGC 58.316 30.769 0.00 0.00 0.00 4.57
4204 6448 6.843069 AAATTACATTGAAACTGTTGTGCC 57.157 33.333 0.00 0.00 0.00 5.01
4206 6450 1.748493 ACATTGAAACTGTTGTGCCGT 59.252 42.857 0.00 0.00 0.00 5.68
4207 6451 2.118683 CATTGAAACTGTTGTGCCGTG 58.881 47.619 0.00 0.00 0.00 4.94
4208 6452 0.179150 TTGAAACTGTTGTGCCGTGC 60.179 50.000 0.00 0.00 0.00 5.34
4209 6453 1.029408 TGAAACTGTTGTGCCGTGCT 61.029 50.000 0.00 0.00 0.00 4.40
4211 6455 1.332375 GAAACTGTTGTGCCGTGCTAA 59.668 47.619 0.00 0.00 0.00 3.09
4214 6458 1.746220 ACTGTTGTGCCGTGCTAAAAA 59.254 42.857 0.00 0.00 0.00 1.94
4233 6477 4.639135 AAAAACTGTTCTGCTTGTCTCC 57.361 40.909 0.00 0.00 0.00 3.71
4234 6478 3.281727 AAACTGTTCTGCTTGTCTCCA 57.718 42.857 0.00 0.00 0.00 3.86
4235 6479 3.281727 AACTGTTCTGCTTGTCTCCAA 57.718 42.857 0.00 0.00 0.00 3.53
4236 6480 3.281727 ACTGTTCTGCTTGTCTCCAAA 57.718 42.857 0.00 0.00 0.00 3.28
4237 6481 3.620488 ACTGTTCTGCTTGTCTCCAAAA 58.380 40.909 0.00 0.00 0.00 2.44
4238 6482 4.016444 ACTGTTCTGCTTGTCTCCAAAAA 58.984 39.130 0.00 0.00 0.00 1.94
4257 6501 3.493767 AAAAGGCGTCCTCTTTTCTCT 57.506 42.857 0.00 0.00 39.41 3.10
4258 6502 2.464157 AAGGCGTCCTCTTTTCTCTG 57.536 50.000 0.00 0.00 30.89 3.35
4259 6503 0.036858 AGGCGTCCTCTTTTCTCTGC 60.037 55.000 0.00 0.00 0.00 4.26
4260 6504 1.355066 GGCGTCCTCTTTTCTCTGCG 61.355 60.000 0.00 0.00 0.00 5.18
4261 6505 1.355066 GCGTCCTCTTTTCTCTGCGG 61.355 60.000 0.00 0.00 0.00 5.69
4262 6506 0.737715 CGTCCTCTTTTCTCTGCGGG 60.738 60.000 0.00 0.00 0.00 6.13
4263 6507 0.391793 GTCCTCTTTTCTCTGCGGGG 60.392 60.000 0.00 0.00 0.00 5.73
4264 6508 0.836400 TCCTCTTTTCTCTGCGGGGT 60.836 55.000 0.00 0.00 0.00 4.95
4265 6509 0.036875 CCTCTTTTCTCTGCGGGGTT 59.963 55.000 0.00 0.00 0.00 4.11
4266 6510 1.278127 CCTCTTTTCTCTGCGGGGTTA 59.722 52.381 0.00 0.00 0.00 2.85
4267 6511 2.290071 CCTCTTTTCTCTGCGGGGTTAA 60.290 50.000 0.00 0.00 0.00 2.01
4268 6512 3.408634 CTCTTTTCTCTGCGGGGTTAAA 58.591 45.455 0.00 0.00 0.00 1.52
4269 6513 3.818773 CTCTTTTCTCTGCGGGGTTAAAA 59.181 43.478 0.00 0.00 0.00 1.52
4270 6514 3.818773 TCTTTTCTCTGCGGGGTTAAAAG 59.181 43.478 11.43 11.43 36.00 2.27
4271 6515 2.194201 TTCTCTGCGGGGTTAAAAGG 57.806 50.000 0.00 0.00 0.00 3.11
4272 6516 1.354101 TCTCTGCGGGGTTAAAAGGA 58.646 50.000 0.00 0.00 0.00 3.36
4273 6517 1.913419 TCTCTGCGGGGTTAAAAGGAT 59.087 47.619 0.00 0.00 0.00 3.24
4274 6518 2.307686 TCTCTGCGGGGTTAAAAGGATT 59.692 45.455 0.00 0.00 0.00 3.01
4275 6519 3.089284 CTCTGCGGGGTTAAAAGGATTT 58.911 45.455 0.00 0.00 42.41 2.17
4276 6520 3.086282 TCTGCGGGGTTAAAAGGATTTC 58.914 45.455 0.00 0.00 37.28 2.17
4277 6521 2.823154 CTGCGGGGTTAAAAGGATTTCA 59.177 45.455 0.00 0.00 37.28 2.69
4278 6522 3.436243 TGCGGGGTTAAAAGGATTTCAT 58.564 40.909 0.00 0.00 37.28 2.57
4279 6523 3.835395 TGCGGGGTTAAAAGGATTTCATT 59.165 39.130 0.00 0.00 37.28 2.57
4280 6524 5.017490 TGCGGGGTTAAAAGGATTTCATTA 58.983 37.500 0.00 0.00 37.28 1.90
4281 6525 5.105675 TGCGGGGTTAAAAGGATTTCATTAC 60.106 40.000 0.00 0.00 37.28 1.89
4282 6526 5.126545 GCGGGGTTAAAAGGATTTCATTACT 59.873 40.000 0.00 0.00 37.28 2.24
4283 6527 6.679638 GCGGGGTTAAAAGGATTTCATTACTC 60.680 42.308 0.00 0.00 37.28 2.59
4284 6528 6.376018 CGGGGTTAAAAGGATTTCATTACTCA 59.624 38.462 0.00 0.00 37.28 3.41
4285 6529 7.094118 CGGGGTTAAAAGGATTTCATTACTCAA 60.094 37.037 0.00 0.00 37.28 3.02
4286 6530 8.033038 GGGGTTAAAAGGATTTCATTACTCAAC 58.967 37.037 0.00 0.00 37.28 3.18
4287 6531 8.803235 GGGTTAAAAGGATTTCATTACTCAACT 58.197 33.333 0.00 0.00 37.28 3.16
4288 6532 9.626045 GGTTAAAAGGATTTCATTACTCAACTG 57.374 33.333 0.00 0.00 37.28 3.16
4292 6536 6.727824 AGGATTTCATTACTCAACTGTTCG 57.272 37.500 0.00 0.00 0.00 3.95
4293 6537 6.464222 AGGATTTCATTACTCAACTGTTCGA 58.536 36.000 0.00 0.00 0.00 3.71
4294 6538 6.934645 AGGATTTCATTACTCAACTGTTCGAA 59.065 34.615 0.00 0.00 0.00 3.71
4295 6539 7.607991 AGGATTTCATTACTCAACTGTTCGAAT 59.392 33.333 0.00 0.00 0.00 3.34
4296 6540 8.879759 GGATTTCATTACTCAACTGTTCGAATA 58.120 33.333 0.00 0.00 0.00 1.75
4313 6557 4.733850 CGAATATTCGCTCCTACATAGCA 58.266 43.478 23.67 0.00 44.26 3.49
4314 6558 4.795795 CGAATATTCGCTCCTACATAGCAG 59.204 45.833 23.67 0.00 44.26 4.24
4315 6559 5.392057 CGAATATTCGCTCCTACATAGCAGA 60.392 44.000 23.67 0.00 44.26 4.26
4316 6560 3.932545 ATTCGCTCCTACATAGCAGAG 57.067 47.619 0.00 0.00 40.08 3.35
4317 6561 1.610363 TCGCTCCTACATAGCAGAGG 58.390 55.000 0.00 0.00 40.08 3.69
4318 6562 1.143073 TCGCTCCTACATAGCAGAGGA 59.857 52.381 0.00 0.00 40.08 3.71
4319 6563 1.957177 CGCTCCTACATAGCAGAGGAA 59.043 52.381 0.00 0.00 38.90 3.36
4320 6564 2.287909 CGCTCCTACATAGCAGAGGAAC 60.288 54.545 0.00 0.00 38.90 3.62
4321 6565 2.287909 GCTCCTACATAGCAGAGGAACG 60.288 54.545 0.00 0.00 38.90 3.95
4322 6566 2.952978 CTCCTACATAGCAGAGGAACGT 59.047 50.000 0.00 0.00 38.90 3.99
4323 6567 3.362706 TCCTACATAGCAGAGGAACGTT 58.637 45.455 0.00 0.00 36.42 3.99
4324 6568 3.767673 TCCTACATAGCAGAGGAACGTTT 59.232 43.478 0.46 0.00 36.42 3.60
4325 6569 3.865745 CCTACATAGCAGAGGAACGTTTG 59.134 47.826 0.46 0.00 31.45 2.93
4326 6570 2.076863 ACATAGCAGAGGAACGTTTGC 58.923 47.619 13.50 13.50 36.83 3.68
4327 6571 2.076100 CATAGCAGAGGAACGTTTGCA 58.924 47.619 21.16 10.16 38.97 4.08
4328 6572 1.795768 TAGCAGAGGAACGTTTGCAG 58.204 50.000 21.16 5.19 38.97 4.41
4329 6573 0.886490 AGCAGAGGAACGTTTGCAGG 60.886 55.000 21.16 5.81 38.97 4.85
4330 6574 1.166531 GCAGAGGAACGTTTGCAGGT 61.167 55.000 15.86 0.00 36.59 4.00
4331 6575 1.308998 CAGAGGAACGTTTGCAGGTT 58.691 50.000 0.46 0.22 33.61 3.50
4332 6576 1.264288 CAGAGGAACGTTTGCAGGTTC 59.736 52.381 0.46 15.14 44.01 3.62
4333 6577 1.134220 AGAGGAACGTTTGCAGGTTCA 60.134 47.619 21.31 0.00 45.74 3.18
4334 6578 1.264288 GAGGAACGTTTGCAGGTTCAG 59.736 52.381 21.31 2.18 45.74 3.02
4335 6579 1.134220 AGGAACGTTTGCAGGTTCAGA 60.134 47.619 21.31 0.00 45.74 3.27
4336 6580 1.264288 GGAACGTTTGCAGGTTCAGAG 59.736 52.381 21.31 0.01 45.74 3.35
4337 6581 0.663153 AACGTTTGCAGGTTCAGAGC 59.337 50.000 0.00 0.00 0.00 4.09
4338 6582 0.463654 ACGTTTGCAGGTTCAGAGCA 60.464 50.000 0.00 0.00 36.32 4.26
4339 6583 0.040958 CGTTTGCAGGTTCAGAGCAC 60.041 55.000 0.00 0.00 38.11 4.40
4340 6584 1.024271 GTTTGCAGGTTCAGAGCACA 58.976 50.000 0.00 0.00 38.11 4.57
4341 6585 1.405105 GTTTGCAGGTTCAGAGCACAA 59.595 47.619 0.00 0.00 38.11 3.33
4342 6586 1.024271 TTGCAGGTTCAGAGCACAAC 58.976 50.000 0.00 0.00 38.11 3.32
4343 6587 0.819259 TGCAGGTTCAGAGCACAACC 60.819 55.000 0.00 0.00 42.26 3.77
4344 6588 0.819259 GCAGGTTCAGAGCACAACCA 60.819 55.000 6.24 0.00 44.10 3.67
4345 6589 1.679139 CAGGTTCAGAGCACAACCAA 58.321 50.000 6.24 0.00 44.10 3.67
4346 6590 2.023673 CAGGTTCAGAGCACAACCAAA 58.976 47.619 6.24 0.00 44.10 3.28
4347 6591 2.024414 AGGTTCAGAGCACAACCAAAC 58.976 47.619 6.24 0.00 44.10 2.93
4348 6592 2.024414 GGTTCAGAGCACAACCAAACT 58.976 47.619 0.00 0.00 41.65 2.66
4349 6593 2.223572 GGTTCAGAGCACAACCAAACTG 60.224 50.000 0.00 0.00 41.65 3.16
4350 6594 1.024271 TCAGAGCACAACCAAACTGC 58.976 50.000 0.00 0.00 0.00 4.40
4351 6595 0.740149 CAGAGCACAACCAAACTGCA 59.260 50.000 0.00 0.00 33.06 4.41
4352 6596 1.027357 AGAGCACAACCAAACTGCAG 58.973 50.000 13.48 13.48 33.06 4.41
4353 6597 0.740737 GAGCACAACCAAACTGCAGT 59.259 50.000 15.25 15.25 33.06 4.40
4354 6598 0.457035 AGCACAACCAAACTGCAGTG 59.543 50.000 22.49 10.86 33.06 3.66
4355 6599 1.147557 GCACAACCAAACTGCAGTGC 61.148 55.000 22.49 13.93 44.31 4.40
4356 6600 0.173029 CACAACCAAACTGCAGTGCA 59.827 50.000 22.49 18.58 36.92 4.57
4357 6601 0.173255 ACAACCAAACTGCAGTGCAC 59.827 50.000 22.49 9.40 33.79 4.57
4358 6602 0.173029 CAACCAAACTGCAGTGCACA 59.827 50.000 22.49 0.00 33.79 4.57
4359 6603 0.894141 AACCAAACTGCAGTGCACAA 59.106 45.000 22.49 2.97 33.79 3.33
4360 6604 0.173255 ACCAAACTGCAGTGCACAAC 59.827 50.000 22.49 11.00 33.79 3.32
4361 6605 0.528249 CCAAACTGCAGTGCACAACC 60.528 55.000 22.49 7.04 33.79 3.77
4362 6606 0.173029 CAAACTGCAGTGCACAACCA 59.827 50.000 22.49 11.45 33.79 3.67
4363 6607 0.894141 AAACTGCAGTGCACAACCAA 59.106 45.000 22.49 0.00 33.79 3.67
4364 6608 0.894141 AACTGCAGTGCACAACCAAA 59.106 45.000 22.49 0.00 33.79 3.28
4365 6609 0.173255 ACTGCAGTGCACAACCAAAC 59.827 50.000 20.97 0.28 33.79 2.93
4366 6610 0.457035 CTGCAGTGCACAACCAAACT 59.543 50.000 21.04 0.00 33.79 2.66
4367 6611 0.173029 TGCAGTGCACAACCAAACTG 59.827 50.000 21.04 6.86 42.35 3.16
4368 6612 2.962089 CAGTGCACAACCAAACTGC 58.038 52.632 21.04 0.00 34.19 4.40
4369 6613 0.173029 CAGTGCACAACCAAACTGCA 59.827 50.000 21.04 0.00 38.60 4.41
4370 6614 0.457035 AGTGCACAACCAAACTGCAG 59.543 50.000 21.04 13.48 41.50 4.41
4371 6615 0.173255 GTGCACAACCAAACTGCAGT 59.827 50.000 15.25 15.25 41.50 4.40
4372 6616 0.894141 TGCACAACCAAACTGCAGTT 59.106 45.000 26.36 26.36 36.00 3.16
4373 6617 1.135141 TGCACAACCAAACTGCAGTTC 60.135 47.619 31.20 16.72 36.00 3.01
4374 6618 1.826327 CACAACCAAACTGCAGTTCG 58.174 50.000 31.20 24.68 37.25 3.95
4375 6619 0.738389 ACAACCAAACTGCAGTTCGG 59.262 50.000 30.76 30.76 38.07 4.30
4376 6620 0.594796 CAACCAAACTGCAGTTCGGC 60.595 55.000 31.98 0.00 35.56 5.54
4377 6621 1.734388 AACCAAACTGCAGTTCGGCC 61.734 55.000 31.98 0.00 35.56 6.13
4378 6622 2.644992 CAAACTGCAGTTCGGCCC 59.355 61.111 31.20 0.00 37.25 5.80
4379 6623 1.898574 CAAACTGCAGTTCGGCCCT 60.899 57.895 31.20 12.86 37.25 5.19
4380 6624 1.600916 AAACTGCAGTTCGGCCCTC 60.601 57.895 31.20 0.00 37.25 4.30
4381 6625 2.056906 AAACTGCAGTTCGGCCCTCT 62.057 55.000 31.20 11.34 37.25 3.69
4382 6626 2.435586 CTGCAGTTCGGCCCTCTG 60.436 66.667 5.25 4.56 0.00 3.35
4383 6627 2.922503 TGCAGTTCGGCCCTCTGA 60.923 61.111 17.12 0.00 0.00 3.27
4384 6628 2.249413 CTGCAGTTCGGCCCTCTGAT 62.249 60.000 17.12 0.00 0.00 2.90
4385 6629 1.522580 GCAGTTCGGCCCTCTGATC 60.523 63.158 17.12 0.51 0.00 2.92
4386 6630 1.227089 CAGTTCGGCCCTCTGATCG 60.227 63.158 9.91 0.00 0.00 3.69
4387 6631 1.682684 AGTTCGGCCCTCTGATCGT 60.683 57.895 0.00 0.00 0.00 3.73
4388 6632 1.218316 GTTCGGCCCTCTGATCGTT 59.782 57.895 0.00 0.00 0.00 3.85
4389 6633 0.806492 GTTCGGCCCTCTGATCGTTC 60.806 60.000 0.00 0.00 0.00 3.95
4390 6634 2.278857 CGGCCCTCTGATCGTTCG 60.279 66.667 0.00 0.00 0.00 3.95
4391 6635 2.771639 CGGCCCTCTGATCGTTCGA 61.772 63.158 0.00 0.00 0.00 3.71
4392 6636 1.515954 GGCCCTCTGATCGTTCGAA 59.484 57.895 0.00 0.00 0.00 3.71
4393 6637 0.528684 GGCCCTCTGATCGTTCGAAG 60.529 60.000 0.00 0.00 0.00 3.79
4394 6638 0.456221 GCCCTCTGATCGTTCGAAGA 59.544 55.000 0.00 0.00 0.00 2.87
4395 6639 1.135083 GCCCTCTGATCGTTCGAAGAA 60.135 52.381 0.00 0.00 45.90 2.52
4396 6640 2.674177 GCCCTCTGATCGTTCGAAGAAA 60.674 50.000 0.00 0.00 45.90 2.52
4397 6641 3.585862 CCCTCTGATCGTTCGAAGAAAA 58.414 45.455 0.00 0.00 45.90 2.29
4398 6642 3.614616 CCCTCTGATCGTTCGAAGAAAAG 59.385 47.826 0.00 1.60 45.90 2.27
4418 6662 8.283291 AGAAAAGAAAAACTATACACTGAAGCG 58.717 33.333 0.00 0.00 0.00 4.68
4425 6669 5.994887 ACTATACACTGAAGCGAGTCTAG 57.005 43.478 0.00 0.00 0.00 2.43
4428 6672 2.712709 ACACTGAAGCGAGTCTAGCTA 58.287 47.619 7.98 0.00 45.31 3.32
4430 6674 3.066064 ACACTGAAGCGAGTCTAGCTATG 59.934 47.826 7.98 7.25 45.31 2.23
4445 6689 6.422400 GTCTAGCTATGCCATTTTCTACTGAC 59.578 42.308 0.00 0.00 0.00 3.51
4448 6692 4.210120 GCTATGCCATTTTCTACTGACGAG 59.790 45.833 0.00 0.00 0.00 4.18
4499 6743 3.818387 TCGGCTCGTCGATAACATAATC 58.182 45.455 0.00 0.00 33.92 1.75
4539 6784 0.459237 GGTCTCTGCCTCACATGACG 60.459 60.000 0.00 0.00 34.41 4.35
4556 6801 4.451150 GACCGCGCACAGGATGGA 62.451 66.667 8.75 0.00 43.62 3.41
4557 6802 4.760047 ACCGCGCACAGGATGGAC 62.760 66.667 8.75 0.00 43.62 4.02
4598 6843 0.753867 TTCCCGCATATGACGCCTAA 59.246 50.000 6.97 2.04 0.00 2.69
4680 6953 2.718789 CGATCGAATAAAATCTGCGGCG 60.719 50.000 10.26 0.51 0.00 6.46
4751 7036 8.251721 GCAGTATAATATTCAGGTATCTTCCGT 58.748 37.037 0.00 0.00 0.00 4.69
4753 7038 8.968969 AGTATAATATTCAGGTATCTTCCGTCC 58.031 37.037 0.00 0.00 0.00 4.79
4807 7096 0.668706 CACGAACTGCTCCACTCCAG 60.669 60.000 0.00 0.00 35.26 3.86
4809 7098 1.376553 GAACTGCTCCACTCCAGCC 60.377 63.158 0.00 0.00 35.89 4.85
4867 7156 1.299541 CCTGGTGTGAACGGCATATC 58.700 55.000 0.00 0.00 0.00 1.63
4884 7173 2.469274 ATCTTGCACTCCAGTCACTG 57.531 50.000 0.00 0.00 0.00 3.66
4909 7198 5.516339 GCAATTTGACACATTTTATCTCCGG 59.484 40.000 0.00 0.00 0.00 5.14
4911 7200 5.873179 TTTGACACATTTTATCTCCGGTC 57.127 39.130 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.947669 ACTCATAGACTTGTACGTATTGTAATC 57.052 33.333 0.00 0.00 34.07 1.75
8 9 9.947669 GACTCATAGACTTGTACGTATTGTAAT 57.052 33.333 0.00 0.00 34.07 1.89
9 10 9.170734 AGACTCATAGACTTGTACGTATTGTAA 57.829 33.333 0.00 0.00 34.07 2.41
10 11 8.728337 AGACTCATAGACTTGTACGTATTGTA 57.272 34.615 0.00 0.00 0.00 2.41
11 12 7.627298 AGACTCATAGACTTGTACGTATTGT 57.373 36.000 0.00 0.00 0.00 2.71
12 13 9.435802 GTTAGACTCATAGACTTGTACGTATTG 57.564 37.037 0.00 0.00 0.00 1.90
13 14 9.170734 TGTTAGACTCATAGACTTGTACGTATT 57.829 33.333 0.00 0.00 0.00 1.89
14 15 8.728337 TGTTAGACTCATAGACTTGTACGTAT 57.272 34.615 0.00 0.00 0.00 3.06
15 16 8.552083 TTGTTAGACTCATAGACTTGTACGTA 57.448 34.615 0.00 0.00 0.00 3.57
16 17 7.444629 TTGTTAGACTCATAGACTTGTACGT 57.555 36.000 0.00 0.00 0.00 3.57
17 18 7.968956 ACATTGTTAGACTCATAGACTTGTACG 59.031 37.037 0.00 0.00 0.00 3.67
18 19 9.077674 CACATTGTTAGACTCATAGACTTGTAC 57.922 37.037 0.00 0.00 0.00 2.90
19 20 8.251026 CCACATTGTTAGACTCATAGACTTGTA 58.749 37.037 0.00 0.00 0.00 2.41
20 21 7.099764 CCACATTGTTAGACTCATAGACTTGT 58.900 38.462 0.00 0.00 0.00 3.16
21 22 6.036517 GCCACATTGTTAGACTCATAGACTTG 59.963 42.308 0.00 0.00 0.00 3.16
22 23 6.109359 GCCACATTGTTAGACTCATAGACTT 58.891 40.000 0.00 0.00 0.00 3.01
23 24 5.665459 GCCACATTGTTAGACTCATAGACT 58.335 41.667 0.00 0.00 0.00 3.24
24 25 4.504461 CGCCACATTGTTAGACTCATAGAC 59.496 45.833 0.00 0.00 0.00 2.59
25 26 4.401202 TCGCCACATTGTTAGACTCATAGA 59.599 41.667 0.00 0.00 0.00 1.98
26 27 4.682787 TCGCCACATTGTTAGACTCATAG 58.317 43.478 0.00 0.00 0.00 2.23
27 28 4.441495 CCTCGCCACATTGTTAGACTCATA 60.441 45.833 0.00 0.00 0.00 2.15
28 29 3.525537 CTCGCCACATTGTTAGACTCAT 58.474 45.455 0.00 0.00 0.00 2.90
29 30 2.353704 CCTCGCCACATTGTTAGACTCA 60.354 50.000 0.00 0.00 0.00 3.41
30 31 2.271800 CCTCGCCACATTGTTAGACTC 58.728 52.381 0.00 0.00 0.00 3.36
31 32 1.623811 ACCTCGCCACATTGTTAGACT 59.376 47.619 0.00 0.00 0.00 3.24
32 33 1.732259 CACCTCGCCACATTGTTAGAC 59.268 52.381 0.00 0.00 0.00 2.59
33 34 1.943968 GCACCTCGCCACATTGTTAGA 60.944 52.381 0.00 0.00 32.94 2.10
34 35 0.447801 GCACCTCGCCACATTGTTAG 59.552 55.000 0.00 0.00 32.94 2.34
35 36 0.036164 AGCACCTCGCCACATTGTTA 59.964 50.000 0.00 0.00 44.04 2.41
36 37 0.823356 AAGCACCTCGCCACATTGTT 60.823 50.000 0.00 0.00 44.04 2.83
37 38 1.228245 AAGCACCTCGCCACATTGT 60.228 52.632 0.00 0.00 44.04 2.71
38 39 1.210931 CAAGCACCTCGCCACATTG 59.789 57.895 0.00 0.00 44.04 2.82
39 40 1.973281 CCAAGCACCTCGCCACATT 60.973 57.895 0.00 0.00 44.04 2.71
40 41 2.360350 CCAAGCACCTCGCCACAT 60.360 61.111 0.00 0.00 44.04 3.21
91 92 4.734398 ATCCCTGATAATTTGCGCAAAA 57.266 36.364 36.42 23.23 33.56 2.44
108 109 7.259088 AGGTTTCACTCCATATACATATCCC 57.741 40.000 0.00 0.00 0.00 3.85
177 178 4.202295 CCAGTTGCCAAGATCAGCTAGATA 60.202 45.833 0.00 0.00 37.00 1.98
178 179 3.433314 CCAGTTGCCAAGATCAGCTAGAT 60.433 47.826 0.00 0.00 40.48 1.98
179 180 2.093288 CCAGTTGCCAAGATCAGCTAGA 60.093 50.000 0.00 0.00 0.00 2.43
213 214 2.252976 TGGGGCAAAAGAAAATGTGC 57.747 45.000 0.00 0.00 36.24 4.57
241 242 5.752650 AGATTGATGAATTCTGAGAGGCAA 58.247 37.500 7.05 1.71 0.00 4.52
250 251 7.631933 AGTTCCTTGAGAGATTGATGAATTCT 58.368 34.615 7.05 0.00 0.00 2.40
262 263 3.234353 TCTTGCTGAGTTCCTTGAGAGA 58.766 45.455 0.00 0.00 0.00 3.10
263 264 3.674528 TCTTGCTGAGTTCCTTGAGAG 57.325 47.619 0.00 0.00 0.00 3.20
416 417 2.749621 ACGGCTGAGAAATCCAAATCAC 59.250 45.455 0.00 0.00 0.00 3.06
451 456 0.643820 GTAAATCGGTTGCGACGGAG 59.356 55.000 18.14 3.85 38.33 4.63
452 457 0.737019 GGTAAATCGGTTGCGACGGA 60.737 55.000 15.94 15.94 39.12 4.69
453 458 1.015085 TGGTAAATCGGTTGCGACGG 61.015 55.000 5.29 5.29 0.00 4.79
454 459 0.094046 GTGGTAAATCGGTTGCGACG 59.906 55.000 0.00 0.00 0.00 5.12
455 460 0.094046 CGTGGTAAATCGGTTGCGAC 59.906 55.000 0.00 0.00 0.00 5.19
485 490 3.117851 AGGGTCTAGGGATTGCTAAAAGC 60.118 47.826 0.00 0.00 42.82 3.51
556 575 0.239347 GTCACGTACCACTACAGCGT 59.761 55.000 0.00 0.00 36.13 5.07
582 601 1.816835 CAGTGGTTTGATCTGCATGCT 59.183 47.619 20.33 0.00 0.00 3.79
590 609 5.592054 TCTATCATCGACAGTGGTTTGATC 58.408 41.667 0.00 0.00 0.00 2.92
611 630 1.945387 AGCATGCAAACGATCGATCT 58.055 45.000 24.34 7.60 0.00 2.75
900 923 9.234384 CGCTCGAGTTTATTTGTATATATAGGG 57.766 37.037 15.13 0.00 0.00 3.53
986 1013 6.477253 TCTATATATGGTCTTGAGCTCTCGT 58.523 40.000 16.19 3.81 0.00 4.18
997 1024 5.205056 GGCTAGCCACTCTATATATGGTCT 58.795 45.833 29.33 3.95 35.79 3.85
1020 1053 0.674895 AGCGTCTTGGCTAGCTTTGG 60.675 55.000 15.72 3.11 42.62 3.28
1032 1065 0.464373 CATGGCCATGGTAGCGTCTT 60.464 55.000 34.31 0.00 35.24 3.01
1060 1105 2.172483 GAGAGCAGTGAAGGCCGGAA 62.172 60.000 5.05 0.00 0.00 4.30
1066 1111 0.455410 CGAGGAGAGAGCAGTGAAGG 59.545 60.000 0.00 0.00 0.00 3.46
1085 1130 3.357079 CAACGTCAGGGCTGCCAC 61.357 66.667 22.05 9.34 0.00 5.01
1100 1145 4.717629 CGCCTGGACGACGAGCAA 62.718 66.667 0.00 0.00 34.06 3.91
1120 1165 4.155733 TAGTGCCGGGTGATGCCG 62.156 66.667 2.18 0.00 38.44 5.69
1151 1196 1.136305 GCTAGCTATTGGACGTGGACA 59.864 52.381 7.70 0.00 0.00 4.02
1205 1256 0.249741 AACGTACACCACCTGCAGAC 60.250 55.000 17.39 1.90 0.00 3.51
1424 1475 2.754375 GAATGTGGGTCGGTGGGT 59.246 61.111 0.00 0.00 0.00 4.51
1425 1476 2.045340 GGAATGTGGGTCGGTGGG 60.045 66.667 0.00 0.00 0.00 4.61
1427 1478 1.377202 CAGGGAATGTGGGTCGGTG 60.377 63.158 0.00 0.00 0.00 4.94
1446 1497 5.578776 CGGAACAAACTCAAGCTTAAAAGT 58.421 37.500 0.00 0.13 0.00 2.66
1451 1502 1.877443 GGCGGAACAAACTCAAGCTTA 59.123 47.619 0.00 0.00 0.00 3.09
1490 1553 2.969238 GCATGCGGAGATGGTCGG 60.969 66.667 0.00 0.00 0.00 4.79
1498 1561 1.915614 AAAGCTTCGTGCATGCGGAG 61.916 55.000 14.09 4.78 45.94 4.63
1636 1699 4.149396 GTGATGGTGAACTTGTACACGTAC 59.851 45.833 5.31 1.35 37.82 3.67
1817 1883 2.991190 GACCAGCAGCAACATTTCAATG 59.009 45.455 0.00 0.00 42.10 2.82
1826 1892 2.010145 TAATCTCGACCAGCAGCAAC 57.990 50.000 0.00 0.00 0.00 4.17
2042 2146 2.231235 CCATGAACAGGCTGGGTAAAAC 59.769 50.000 20.34 2.59 0.00 2.43
2054 2158 1.250328 TTTCTGCAGGCCATGAACAG 58.750 50.000 15.13 4.77 0.00 3.16
2056 2160 3.323751 AAATTTCTGCAGGCCATGAAC 57.676 42.857 15.13 0.00 0.00 3.18
2059 2163 3.194116 ACAGTAAATTTCTGCAGGCCATG 59.806 43.478 15.13 0.97 36.50 3.66
2062 2166 2.672195 GCACAGTAAATTTCTGCAGGCC 60.672 50.000 15.13 0.00 36.50 5.19
2077 2226 1.867233 CAGCTCTACGTTTTGCACAGT 59.133 47.619 0.00 0.00 0.00 3.55
2078 2227 2.135139 TCAGCTCTACGTTTTGCACAG 58.865 47.619 0.00 0.00 0.00 3.66
2122 2280 5.348164 ACTGTCTGCAAACGCTTTTATTTT 58.652 33.333 0.00 0.00 0.00 1.82
2124 2282 4.568152 ACTGTCTGCAAACGCTTTTATT 57.432 36.364 0.00 0.00 0.00 1.40
2125 2283 4.568152 AACTGTCTGCAAACGCTTTTAT 57.432 36.364 0.00 0.00 0.00 1.40
2126 2284 4.101942 CAAACTGTCTGCAAACGCTTTTA 58.898 39.130 0.00 0.00 0.00 1.52
2132 2290 1.191096 GCACAAACTGTCTGCAAACG 58.809 50.000 0.00 0.00 0.00 3.60
2195 2365 0.605589 AAACCTCCTGGCGTACTTGC 60.606 55.000 0.00 0.00 36.63 4.01
2215 2385 4.927978 TTCGTTGGTGATTTTGATTGGT 57.072 36.364 0.00 0.00 0.00 3.67
2248 2418 5.389935 CGAGGAAGTAACACTGAAATCTTGC 60.390 44.000 0.00 0.00 0.00 4.01
2258 2428 2.624838 TCCGTTTCGAGGAAGTAACACT 59.375 45.455 0.00 0.00 34.33 3.55
2438 2608 1.468520 CCAATTCCAAGGTGTAGCGTG 59.531 52.381 0.00 0.00 0.00 5.34
2459 2629 0.655733 CCGAAAACGACTTGCACAGT 59.344 50.000 0.00 0.00 39.07 3.55
2460 2630 0.655733 ACCGAAAACGACTTGCACAG 59.344 50.000 0.00 0.00 0.00 3.66
2498 2668 8.997323 AGTTAGTCGATTAGCGTATGTAGTATT 58.003 33.333 0.00 0.00 41.80 1.89
2500 2670 7.953158 AGTTAGTCGATTAGCGTATGTAGTA 57.047 36.000 0.00 0.00 41.80 1.82
2502 2672 8.016497 ACTAGTTAGTCGATTAGCGTATGTAG 57.984 38.462 0.00 0.00 41.80 2.74
2517 2687 2.074547 TGCACGGCAACTAGTTAGTC 57.925 50.000 8.04 3.84 34.76 2.59
2573 2747 3.628646 CTTCCCGGGCTCCACCTTG 62.629 68.421 18.49 0.00 39.10 3.61
2636 2810 0.322546 GGTTGGCCACGGAGAAGAAT 60.323 55.000 3.88 0.00 34.09 2.40
2695 2869 2.525629 TCCTCACGGTGAAGGGCA 60.526 61.111 12.54 0.00 0.00 5.36
2708 2882 1.051556 GGGAGATGACCAGGGTCCTC 61.052 65.000 15.53 14.61 43.97 3.71
2775 2949 0.796312 AACATGTAGAAGTTGGCGCG 59.204 50.000 0.00 0.00 0.00 6.86
3068 3242 2.173519 CAAGTCATGTTCTTGGGGCAT 58.826 47.619 18.45 0.00 38.70 4.40
3374 3551 0.512952 CGAAGAAGTTGAAGCCGTGG 59.487 55.000 0.00 0.00 0.00 4.94
3439 3616 1.537562 GGTCGACGAGGTTGAACTTGT 60.538 52.381 9.92 0.00 37.80 3.16
3539 3716 6.369065 GGTTCTTAGGGCATTGTATAGAATCG 59.631 42.308 0.00 0.00 0.00 3.34
3568 3763 7.037438 GGCACACATGAATATCTCACAAATTT 58.963 34.615 0.00 0.00 36.69 1.82
3571 3766 4.094739 CGGCACACATGAATATCTCACAAA 59.905 41.667 0.00 0.00 36.69 2.83
3595 3790 3.239254 CATGCATACACAACAACAGCAG 58.761 45.455 0.00 0.00 33.69 4.24
3598 3793 2.981805 GCACATGCATACACAACAACAG 59.018 45.455 0.00 0.00 41.59 3.16
3641 3856 0.107643 TCGTGTGCACCTCCAAATGA 59.892 50.000 15.69 2.15 0.00 2.57
3788 4003 2.164219 GGCGAGCAAATCAAAATGAGGA 59.836 45.455 0.00 0.00 0.00 3.71
3899 4114 5.954296 AACATCTTCATCAGAAAGTGGTG 57.046 39.130 0.00 0.00 38.84 4.17
3951 4167 6.718454 TTTTGATATTTTCCCGTGCAATTG 57.282 33.333 0.00 0.00 0.00 2.32
4014 4233 3.440173 CAGTTGGGCTGTATTAACCACAG 59.560 47.826 12.62 12.62 45.08 3.66
4081 4302 3.403057 CACGCGACTTGGACCGTG 61.403 66.667 15.93 0.00 43.83 4.94
4111 4332 0.698818 ACTAAGCCCACCTTTCCTGG 59.301 55.000 0.00 0.00 34.95 4.45
4120 4341 5.509332 GGCTCTAATGTACTACTAAGCCCAC 60.509 48.000 14.44 0.00 41.72 4.61
4123 4344 4.518211 TCGGCTCTAATGTACTACTAAGCC 59.482 45.833 15.05 15.05 43.61 4.35
4126 4347 9.565090 TTAGAATCGGCTCTAATGTACTACTAA 57.435 33.333 0.00 0.00 33.84 2.24
4178 6422 7.201600 GGCACAACAGTTTCAATGTAATTTTGT 60.202 33.333 0.00 0.00 31.22 2.83
4179 6423 7.125113 GGCACAACAGTTTCAATGTAATTTTG 58.875 34.615 0.00 0.00 31.22 2.44
4184 6428 3.378742 ACGGCACAACAGTTTCAATGTAA 59.621 39.130 0.00 0.00 0.00 2.41
4194 6438 1.384525 TTTTAGCACGGCACAACAGT 58.615 45.000 0.00 0.00 0.00 3.55
4214 6458 3.281727 TGGAGACAAGCAGAACAGTTT 57.718 42.857 0.00 0.00 37.44 2.66
4236 6480 3.565902 CAGAGAAAAGAGGACGCCTTTTT 59.434 43.478 8.07 8.07 42.07 1.94
4237 6481 3.142174 CAGAGAAAAGAGGACGCCTTTT 58.858 45.455 0.00 0.00 43.95 2.27
4238 6482 2.772287 CAGAGAAAAGAGGACGCCTTT 58.228 47.619 0.00 0.00 35.55 3.11
4239 6483 1.609320 GCAGAGAAAAGAGGACGCCTT 60.609 52.381 0.00 0.00 31.76 4.35
4240 6484 0.036858 GCAGAGAAAAGAGGACGCCT 60.037 55.000 0.00 0.00 36.03 5.52
4241 6485 1.355066 CGCAGAGAAAAGAGGACGCC 61.355 60.000 0.00 0.00 0.00 5.68
4242 6486 1.355066 CCGCAGAGAAAAGAGGACGC 61.355 60.000 0.00 0.00 0.00 5.19
4243 6487 0.737715 CCCGCAGAGAAAAGAGGACG 60.738 60.000 0.00 0.00 0.00 4.79
4244 6488 0.391793 CCCCGCAGAGAAAAGAGGAC 60.392 60.000 0.00 0.00 0.00 3.85
4245 6489 0.836400 ACCCCGCAGAGAAAAGAGGA 60.836 55.000 0.00 0.00 0.00 3.71
4246 6490 0.036875 AACCCCGCAGAGAAAAGAGG 59.963 55.000 0.00 0.00 0.00 3.69
4247 6491 2.762535 TAACCCCGCAGAGAAAAGAG 57.237 50.000 0.00 0.00 0.00 2.85
4248 6492 3.495434 TTTAACCCCGCAGAGAAAAGA 57.505 42.857 0.00 0.00 0.00 2.52
4249 6493 3.057526 CCTTTTAACCCCGCAGAGAAAAG 60.058 47.826 0.00 0.00 34.94 2.27
4250 6494 2.888414 CCTTTTAACCCCGCAGAGAAAA 59.112 45.455 0.00 0.00 0.00 2.29
4251 6495 2.106857 TCCTTTTAACCCCGCAGAGAAA 59.893 45.455 0.00 0.00 0.00 2.52
4252 6496 1.700739 TCCTTTTAACCCCGCAGAGAA 59.299 47.619 0.00 0.00 0.00 2.87
4253 6497 1.354101 TCCTTTTAACCCCGCAGAGA 58.646 50.000 0.00 0.00 0.00 3.10
4254 6498 2.420058 ATCCTTTTAACCCCGCAGAG 57.580 50.000 0.00 0.00 0.00 3.35
4255 6499 2.891191 AATCCTTTTAACCCCGCAGA 57.109 45.000 0.00 0.00 0.00 4.26
4256 6500 2.823154 TGAAATCCTTTTAACCCCGCAG 59.177 45.455 0.00 0.00 0.00 5.18
4257 6501 2.877866 TGAAATCCTTTTAACCCCGCA 58.122 42.857 0.00 0.00 0.00 5.69
4258 6502 4.465632 AATGAAATCCTTTTAACCCCGC 57.534 40.909 0.00 0.00 0.00 6.13
4259 6503 6.376018 TGAGTAATGAAATCCTTTTAACCCCG 59.624 38.462 0.00 0.00 0.00 5.73
4260 6504 7.712204 TGAGTAATGAAATCCTTTTAACCCC 57.288 36.000 0.00 0.00 0.00 4.95
4261 6505 8.803235 AGTTGAGTAATGAAATCCTTTTAACCC 58.197 33.333 0.00 0.00 0.00 4.11
4262 6506 9.626045 CAGTTGAGTAATGAAATCCTTTTAACC 57.374 33.333 0.00 0.00 0.00 2.85
4266 6510 8.076178 CGAACAGTTGAGTAATGAAATCCTTTT 58.924 33.333 0.00 0.00 0.00 2.27
4267 6511 7.444183 TCGAACAGTTGAGTAATGAAATCCTTT 59.556 33.333 0.00 0.00 0.00 3.11
4268 6512 6.934645 TCGAACAGTTGAGTAATGAAATCCTT 59.065 34.615 0.00 0.00 0.00 3.36
4269 6513 6.464222 TCGAACAGTTGAGTAATGAAATCCT 58.536 36.000 0.00 0.00 0.00 3.24
4270 6514 6.721571 TCGAACAGTTGAGTAATGAAATCC 57.278 37.500 0.00 0.00 0.00 3.01
4291 6535 9.939005 CCTCTGCTATGTAGGAGCGAATATTCG 62.939 48.148 29.18 29.18 43.19 3.34
4292 6536 5.955488 TCTGCTATGTAGGAGCGAATATTC 58.045 41.667 5.30 5.30 43.19 1.75
4293 6537 5.105554 CCTCTGCTATGTAGGAGCGAATATT 60.106 44.000 3.92 0.00 43.19 1.28
4294 6538 4.400884 CCTCTGCTATGTAGGAGCGAATAT 59.599 45.833 3.92 0.00 43.19 1.28
4295 6539 3.759086 CCTCTGCTATGTAGGAGCGAATA 59.241 47.826 3.92 0.00 43.19 1.75
4296 6540 2.560542 CCTCTGCTATGTAGGAGCGAAT 59.439 50.000 3.92 0.00 43.19 3.34
4297 6541 1.957177 CCTCTGCTATGTAGGAGCGAA 59.043 52.381 3.92 0.00 43.19 4.70
4298 6542 1.143073 TCCTCTGCTATGTAGGAGCGA 59.857 52.381 3.92 0.30 43.19 4.93
4299 6543 1.610363 TCCTCTGCTATGTAGGAGCG 58.390 55.000 3.92 0.00 43.19 5.03
4300 6544 2.287909 CGTTCCTCTGCTATGTAGGAGC 60.288 54.545 3.92 0.00 40.43 4.70
4301 6545 2.952978 ACGTTCCTCTGCTATGTAGGAG 59.047 50.000 2.49 2.49 40.43 3.69
4302 6546 3.014304 ACGTTCCTCTGCTATGTAGGA 57.986 47.619 0.00 0.00 37.64 2.94
4303 6547 3.802948 AACGTTCCTCTGCTATGTAGG 57.197 47.619 0.00 0.00 0.00 3.18
4304 6548 3.307242 GCAAACGTTCCTCTGCTATGTAG 59.693 47.826 13.97 0.00 0.00 2.74
4305 6549 3.259064 GCAAACGTTCCTCTGCTATGTA 58.741 45.455 13.97 0.00 0.00 2.29
4306 6550 2.076863 GCAAACGTTCCTCTGCTATGT 58.923 47.619 13.97 0.00 0.00 2.29
4307 6551 2.076100 TGCAAACGTTCCTCTGCTATG 58.924 47.619 20.02 5.52 35.78 2.23
4308 6552 2.350522 CTGCAAACGTTCCTCTGCTAT 58.649 47.619 20.02 0.00 35.78 2.97
4309 6553 1.608025 CCTGCAAACGTTCCTCTGCTA 60.608 52.381 20.02 8.67 35.78 3.49
4310 6554 0.886490 CCTGCAAACGTTCCTCTGCT 60.886 55.000 20.02 0.00 35.78 4.24
4311 6555 1.166531 ACCTGCAAACGTTCCTCTGC 61.167 55.000 14.29 14.29 35.32 4.26
4312 6556 1.264288 GAACCTGCAAACGTTCCTCTG 59.736 52.381 0.00 0.00 33.71 3.35
4313 6557 1.134220 TGAACCTGCAAACGTTCCTCT 60.134 47.619 0.00 0.00 38.05 3.69
4314 6558 1.264288 CTGAACCTGCAAACGTTCCTC 59.736 52.381 0.00 0.00 38.05 3.71
4315 6559 1.134220 TCTGAACCTGCAAACGTTCCT 60.134 47.619 0.00 0.00 38.05 3.36
4316 6560 1.264288 CTCTGAACCTGCAAACGTTCC 59.736 52.381 0.00 0.00 38.05 3.62
4317 6561 1.334149 GCTCTGAACCTGCAAACGTTC 60.334 52.381 0.00 11.99 39.07 3.95
4318 6562 0.663153 GCTCTGAACCTGCAAACGTT 59.337 50.000 0.00 0.00 0.00 3.99
4319 6563 0.463654 TGCTCTGAACCTGCAAACGT 60.464 50.000 0.00 0.00 33.48 3.99
4320 6564 0.040958 GTGCTCTGAACCTGCAAACG 60.041 55.000 0.00 0.00 38.50 3.60
4321 6565 1.024271 TGTGCTCTGAACCTGCAAAC 58.976 50.000 0.00 0.00 38.50 2.93
4322 6566 1.405105 GTTGTGCTCTGAACCTGCAAA 59.595 47.619 0.00 0.00 38.50 3.68
4323 6567 1.024271 GTTGTGCTCTGAACCTGCAA 58.976 50.000 0.00 0.00 38.50 4.08
4324 6568 0.819259 GGTTGTGCTCTGAACCTGCA 60.819 55.000 0.00 0.00 38.91 4.41
4325 6569 0.819259 TGGTTGTGCTCTGAACCTGC 60.819 55.000 8.84 0.00 41.99 4.85
4326 6570 1.679139 TTGGTTGTGCTCTGAACCTG 58.321 50.000 8.84 0.00 41.99 4.00
4327 6571 2.024414 GTTTGGTTGTGCTCTGAACCT 58.976 47.619 8.84 0.00 41.99 3.50
4328 6572 2.024414 AGTTTGGTTGTGCTCTGAACC 58.976 47.619 0.00 0.00 41.85 3.62
4329 6573 2.796032 GCAGTTTGGTTGTGCTCTGAAC 60.796 50.000 0.00 0.00 34.23 3.18
4330 6574 1.405105 GCAGTTTGGTTGTGCTCTGAA 59.595 47.619 0.00 0.00 34.23 3.02
4331 6575 1.024271 GCAGTTTGGTTGTGCTCTGA 58.976 50.000 0.00 0.00 34.23 3.27
4332 6576 0.740149 TGCAGTTTGGTTGTGCTCTG 59.260 50.000 0.00 0.00 38.09 3.35
4333 6577 1.027357 CTGCAGTTTGGTTGTGCTCT 58.973 50.000 5.25 0.00 38.09 4.09
4334 6578 0.740737 ACTGCAGTTTGGTTGTGCTC 59.259 50.000 15.25 0.00 38.09 4.26
4335 6579 0.457035 CACTGCAGTTTGGTTGTGCT 59.543 50.000 18.94 0.00 38.09 4.40
4336 6580 1.147557 GCACTGCAGTTTGGTTGTGC 61.148 55.000 18.94 12.29 42.69 4.57
4337 6581 0.173029 TGCACTGCAGTTTGGTTGTG 59.827 50.000 18.94 5.26 33.32 3.33
4338 6582 0.173255 GTGCACTGCAGTTTGGTTGT 59.827 50.000 18.94 0.00 40.08 3.32
4339 6583 0.173029 TGTGCACTGCAGTTTGGTTG 59.827 50.000 18.94 5.95 40.08 3.77
4340 6584 0.894141 TTGTGCACTGCAGTTTGGTT 59.106 45.000 18.94 0.00 40.08 3.67
4341 6585 0.173255 GTTGTGCACTGCAGTTTGGT 59.827 50.000 18.94 0.00 40.08 3.67
4342 6586 0.528249 GGTTGTGCACTGCAGTTTGG 60.528 55.000 18.94 7.55 40.08 3.28
4343 6587 0.173029 TGGTTGTGCACTGCAGTTTG 59.827 50.000 18.94 8.46 40.08 2.93
4344 6588 0.894141 TTGGTTGTGCACTGCAGTTT 59.106 45.000 18.94 0.00 40.08 2.66
4345 6589 0.894141 TTTGGTTGTGCACTGCAGTT 59.106 45.000 18.94 0.00 40.08 3.16
4346 6590 0.173255 GTTTGGTTGTGCACTGCAGT 59.827 50.000 15.25 15.25 40.08 4.40
4347 6591 0.457035 AGTTTGGTTGTGCACTGCAG 59.543 50.000 19.41 13.48 40.08 4.41
4348 6592 0.173029 CAGTTTGGTTGTGCACTGCA 59.827 50.000 19.41 0.00 35.60 4.41
4349 6593 2.962089 CAGTTTGGTTGTGCACTGC 58.038 52.632 19.41 10.40 30.79 4.40
4350 6594 0.173029 TGCAGTTTGGTTGTGCACTG 59.827 50.000 19.41 6.24 42.20 3.66
4351 6595 0.457035 CTGCAGTTTGGTTGTGCACT 59.543 50.000 19.41 0.00 42.20 4.40
4352 6596 0.173255 ACTGCAGTTTGGTTGTGCAC 59.827 50.000 15.25 10.75 42.20 4.57
4353 6597 0.894141 AACTGCAGTTTGGTTGTGCA 59.106 45.000 26.36 0.00 44.80 4.57
4354 6598 1.559831 GAACTGCAGTTTGGTTGTGC 58.440 50.000 31.58 13.57 38.56 4.57
4355 6599 1.826327 CGAACTGCAGTTTGGTTGTG 58.174 50.000 31.50 14.17 38.56 3.33
4361 6605 1.856265 GAGGGCCGAACTGCAGTTTG 61.856 60.000 31.97 31.97 38.56 2.93
4362 6606 1.600916 GAGGGCCGAACTGCAGTTT 60.601 57.895 31.58 15.89 38.56 2.66
4363 6607 2.032681 GAGGGCCGAACTGCAGTT 59.967 61.111 31.57 31.57 41.64 3.16
4364 6608 2.925170 AGAGGGCCGAACTGCAGT 60.925 61.111 15.25 15.25 0.00 4.40
4365 6609 2.249413 ATCAGAGGGCCGAACTGCAG 62.249 60.000 13.48 13.48 0.00 4.41
4366 6610 2.244117 GATCAGAGGGCCGAACTGCA 62.244 60.000 18.49 10.99 0.00 4.41
4367 6611 1.522580 GATCAGAGGGCCGAACTGC 60.523 63.158 18.49 6.83 0.00 4.40
4368 6612 1.227089 CGATCAGAGGGCCGAACTG 60.227 63.158 17.63 17.63 0.00 3.16
4369 6613 1.258445 AACGATCAGAGGGCCGAACT 61.258 55.000 0.00 0.00 0.00 3.01
4370 6614 0.806492 GAACGATCAGAGGGCCGAAC 60.806 60.000 0.00 0.00 0.00 3.95
4371 6615 1.515954 GAACGATCAGAGGGCCGAA 59.484 57.895 0.00 0.00 0.00 4.30
4372 6616 2.771639 CGAACGATCAGAGGGCCGA 61.772 63.158 0.00 0.00 0.00 5.54
4373 6617 2.278857 CGAACGATCAGAGGGCCG 60.279 66.667 0.00 0.00 0.00 6.13
4374 6618 0.528684 CTTCGAACGATCAGAGGGCC 60.529 60.000 0.00 0.00 0.00 5.80
4375 6619 0.456221 TCTTCGAACGATCAGAGGGC 59.544 55.000 0.00 0.00 0.00 5.19
4376 6620 2.941453 TTCTTCGAACGATCAGAGGG 57.059 50.000 0.00 0.00 0.00 4.30
4377 6621 4.486090 TCTTTTCTTCGAACGATCAGAGG 58.514 43.478 0.00 0.00 0.00 3.69
4378 6622 6.453643 TTTCTTTTCTTCGAACGATCAGAG 57.546 37.500 0.00 0.00 0.00 3.35
4379 6623 6.838198 TTTTCTTTTCTTCGAACGATCAGA 57.162 33.333 0.00 0.00 0.00 3.27
4380 6624 7.126398 AGTTTTTCTTTTCTTCGAACGATCAG 58.874 34.615 0.00 0.00 0.00 2.90
4381 6625 7.011828 AGTTTTTCTTTTCTTCGAACGATCA 57.988 32.000 0.00 0.00 0.00 2.92
4384 6628 9.033481 TGTATAGTTTTTCTTTTCTTCGAACGA 57.967 29.630 0.00 0.00 0.00 3.85
4385 6629 9.089123 GTGTATAGTTTTTCTTTTCTTCGAACG 57.911 33.333 0.00 0.00 0.00 3.95
4388 6632 9.537192 TCAGTGTATAGTTTTTCTTTTCTTCGA 57.463 29.630 0.00 0.00 0.00 3.71
4391 6635 9.952188 GCTTCAGTGTATAGTTTTTCTTTTCTT 57.048 29.630 0.00 0.00 0.00 2.52
4392 6636 8.283291 CGCTTCAGTGTATAGTTTTTCTTTTCT 58.717 33.333 0.00 0.00 0.00 2.52
4393 6637 8.280497 TCGCTTCAGTGTATAGTTTTTCTTTTC 58.720 33.333 0.00 0.00 0.00 2.29
4394 6638 8.149973 TCGCTTCAGTGTATAGTTTTTCTTTT 57.850 30.769 0.00 0.00 0.00 2.27
4395 6639 7.441458 ACTCGCTTCAGTGTATAGTTTTTCTTT 59.559 33.333 0.00 0.00 0.00 2.52
4396 6640 6.929606 ACTCGCTTCAGTGTATAGTTTTTCTT 59.070 34.615 0.00 0.00 0.00 2.52
4397 6641 6.456501 ACTCGCTTCAGTGTATAGTTTTTCT 58.543 36.000 0.00 0.00 0.00 2.52
4398 6642 6.586844 AGACTCGCTTCAGTGTATAGTTTTTC 59.413 38.462 0.00 0.00 0.00 2.29
4418 6662 6.644592 CAGTAGAAAATGGCATAGCTAGACTC 59.355 42.308 0.00 0.00 0.00 3.36
4425 6669 4.119862 TCGTCAGTAGAAAATGGCATAGC 58.880 43.478 0.00 0.00 0.00 2.97
4428 6672 4.184629 GTCTCGTCAGTAGAAAATGGCAT 58.815 43.478 0.00 0.00 0.00 4.40
4430 6674 2.930682 GGTCTCGTCAGTAGAAAATGGC 59.069 50.000 0.00 0.00 0.00 4.40
4445 6689 1.956170 AGCGCAACTTGTGGTCTCG 60.956 57.895 11.47 0.00 32.63 4.04
4499 6743 3.434739 CCTGGGAGATCTGGAAAGGATTG 60.435 52.174 0.00 0.00 0.00 2.67
4539 6784 4.451150 TCCATCCTGTGCGCGGTC 62.451 66.667 8.83 0.00 0.00 4.79
4554 6799 0.109597 TTTCGCCTAGTCGTTCGTCC 60.110 55.000 0.00 0.00 0.00 4.79
4555 6800 0.980525 GTTTCGCCTAGTCGTTCGTC 59.019 55.000 0.00 0.00 0.00 4.20
4556 6801 0.311790 TGTTTCGCCTAGTCGTTCGT 59.688 50.000 0.00 0.00 0.00 3.85
4557 6802 0.706729 GTGTTTCGCCTAGTCGTTCG 59.293 55.000 0.00 0.00 0.00 3.95
4598 6843 1.069668 GTCACGGTGTAAAGGACAGGT 59.930 52.381 8.17 0.00 39.29 4.00
4807 7096 1.450312 CGAACCTGATCTGTGGGGC 60.450 63.158 0.00 0.00 0.00 5.80
4809 7098 1.450312 GCCGAACCTGATCTGTGGG 60.450 63.158 0.00 0.00 0.00 4.61
4884 7173 5.516339 CGGAGATAAAATGTGTCAAATTGCC 59.484 40.000 0.00 0.00 0.00 4.52
4886 7175 6.620678 ACCGGAGATAAAATGTGTCAAATTG 58.379 36.000 9.46 0.00 0.00 2.32
4909 7198 3.378552 GTGCTCATCGCGAGTGAC 58.621 61.111 16.66 12.63 44.33 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.