Multiple sequence alignment - TraesCS3A01G360300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G360300 chr3A 100.000 4463 0 0 1 4463 608188211 608192673 0.000000e+00 8242.0
1 TraesCS3A01G360300 chr3A 97.561 41 1 0 4302 4342 580599650 580599690 2.230000e-08 71.3
2 TraesCS3A01G360300 chr3A 95.455 44 1 1 4299 4342 729116880 729116922 8.010000e-08 69.4
3 TraesCS3A01G360300 chr3D 94.600 3667 154 30 830 4463 464800338 464803993 0.000000e+00 5635.0
4 TraesCS3A01G360300 chr3D 88.987 454 15 12 293 732 464799532 464799964 3.060000e-146 529.0
5 TraesCS3A01G360300 chr3B 90.562 4238 214 68 309 4439 618147928 618152086 0.000000e+00 5439.0
6 TraesCS3A01G360300 chr6B 97.619 42 0 1 4301 4342 203686801 203686761 2.230000e-08 71.3
7 TraesCS3A01G360300 chr5A 100.000 38 0 0 4305 4342 463758857 463758820 2.230000e-08 71.3
8 TraesCS3A01G360300 chr5A 100.000 38 0 0 4305 4342 621176823 621176860 2.230000e-08 71.3
9 TraesCS3A01G360300 chr5A 97.500 40 0 1 4302 4341 504784405 504784443 2.880000e-07 67.6
10 TraesCS3A01G360300 chr1D 100.000 38 0 0 4305 4342 277349164 277349127 2.230000e-08 71.3
11 TraesCS3A01G360300 chr4D 100.000 37 0 0 4306 4342 497218421 497218385 8.010000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G360300 chr3A 608188211 608192673 4462 False 8242 8242 100.0000 1 4463 1 chr3A.!!$F2 4462
1 TraesCS3A01G360300 chr3D 464799532 464803993 4461 False 3082 5635 91.7935 293 4463 2 chr3D.!!$F1 4170
2 TraesCS3A01G360300 chr3B 618147928 618152086 4158 False 5439 5439 90.5620 309 4439 1 chr3B.!!$F1 4130

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
773 846 0.034896 CCATTTATCCTCCCCCGTCG 59.965 60.0 0.0 0.0 0.00 5.12 F
1916 2313 0.107459 AGCCGAGGATTTGAAGAGGC 60.107 55.0 0.0 0.0 43.07 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2406 2803 1.032794 CAGATGCATGCTGCCTGATT 58.967 50.0 20.33 0.00 44.23 2.57 R
3908 4311 1.139816 CGCATGAGCTTGCAATGCAG 61.140 55.0 23.21 15.86 42.91 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.660789 AAACATATGGCTTTGATCCAGC 57.339 40.909 7.80 5.58 36.98 4.85
24 25 3.301794 ACATATGGCTTTGATCCAGCA 57.698 42.857 14.28 3.44 39.21 4.41
25 26 3.220110 ACATATGGCTTTGATCCAGCAG 58.780 45.455 14.28 3.44 39.21 4.24
26 27 3.220110 CATATGGCTTTGATCCAGCAGT 58.780 45.455 14.28 6.13 39.21 4.40
27 28 1.760192 ATGGCTTTGATCCAGCAGTC 58.240 50.000 14.28 0.59 39.21 3.51
28 29 0.401356 TGGCTTTGATCCAGCAGTCA 59.599 50.000 14.28 2.84 39.21 3.41
29 30 0.807496 GGCTTTGATCCAGCAGTCAC 59.193 55.000 14.28 0.00 39.21 3.67
30 31 0.445436 GCTTTGATCCAGCAGTCACG 59.555 55.000 8.75 0.00 37.22 4.35
31 32 1.800805 CTTTGATCCAGCAGTCACGT 58.199 50.000 0.00 0.00 0.00 4.49
32 33 2.146342 CTTTGATCCAGCAGTCACGTT 58.854 47.619 0.00 0.00 0.00 3.99
33 34 1.795768 TTGATCCAGCAGTCACGTTC 58.204 50.000 0.00 0.00 0.00 3.95
34 35 0.678950 TGATCCAGCAGTCACGTTCA 59.321 50.000 0.00 0.00 0.00 3.18
35 36 1.071605 GATCCAGCAGTCACGTTCAC 58.928 55.000 0.00 0.00 0.00 3.18
36 37 0.320771 ATCCAGCAGTCACGTTCACC 60.321 55.000 0.00 0.00 0.00 4.02
37 38 1.961277 CCAGCAGTCACGTTCACCC 60.961 63.158 0.00 0.00 0.00 4.61
38 39 1.227527 CAGCAGTCACGTTCACCCA 60.228 57.895 0.00 0.00 0.00 4.51
39 40 1.227556 AGCAGTCACGTTCACCCAC 60.228 57.895 0.00 0.00 0.00 4.61
40 41 2.251642 GCAGTCACGTTCACCCACC 61.252 63.158 0.00 0.00 0.00 4.61
41 42 1.145156 CAGTCACGTTCACCCACCA 59.855 57.895 0.00 0.00 0.00 4.17
42 43 0.250295 CAGTCACGTTCACCCACCAT 60.250 55.000 0.00 0.00 0.00 3.55
43 44 1.001520 CAGTCACGTTCACCCACCATA 59.998 52.381 0.00 0.00 0.00 2.74
44 45 1.001633 AGTCACGTTCACCCACCATAC 59.998 52.381 0.00 0.00 0.00 2.39
45 46 1.049402 TCACGTTCACCCACCATACA 58.951 50.000 0.00 0.00 0.00 2.29
46 47 1.626321 TCACGTTCACCCACCATACAT 59.374 47.619 0.00 0.00 0.00 2.29
47 48 1.737236 CACGTTCACCCACCATACATG 59.263 52.381 0.00 0.00 0.00 3.21
48 49 0.732571 CGTTCACCCACCATACATGC 59.267 55.000 0.00 0.00 0.00 4.06
49 50 1.832883 GTTCACCCACCATACATGCA 58.167 50.000 0.00 0.00 0.00 3.96
50 51 1.472480 GTTCACCCACCATACATGCAC 59.528 52.381 0.00 0.00 0.00 4.57
51 52 0.695347 TCACCCACCATACATGCACA 59.305 50.000 0.00 0.00 0.00 4.57
52 53 1.284491 TCACCCACCATACATGCACAT 59.716 47.619 0.00 0.00 0.00 3.21
53 54 1.677576 CACCCACCATACATGCACATC 59.322 52.381 0.00 0.00 0.00 3.06
54 55 1.565759 ACCCACCATACATGCACATCT 59.434 47.619 0.00 0.00 0.00 2.90
55 56 2.224606 CCCACCATACATGCACATCTC 58.775 52.381 0.00 0.00 0.00 2.75
56 57 2.224606 CCACCATACATGCACATCTCC 58.775 52.381 0.00 0.00 0.00 3.71
57 58 2.158711 CCACCATACATGCACATCTCCT 60.159 50.000 0.00 0.00 0.00 3.69
58 59 2.876550 CACCATACATGCACATCTCCTG 59.123 50.000 0.00 0.00 0.00 3.86
59 60 2.158711 ACCATACATGCACATCTCCTGG 60.159 50.000 0.00 0.00 0.00 4.45
60 61 2.105306 CCATACATGCACATCTCCTGGA 59.895 50.000 0.00 0.00 0.00 3.86
61 62 2.988010 TACATGCACATCTCCTGGAC 57.012 50.000 0.00 0.00 0.00 4.02
62 63 0.986527 ACATGCACATCTCCTGGACA 59.013 50.000 0.00 0.00 0.00 4.02
63 64 1.065636 ACATGCACATCTCCTGGACAG 60.066 52.381 0.00 0.00 0.00 3.51
64 65 0.107312 ATGCACATCTCCTGGACAGC 60.107 55.000 0.00 0.00 0.00 4.40
65 66 1.297689 GCACATCTCCTGGACAGCA 59.702 57.895 0.00 0.00 0.00 4.41
66 67 0.107312 GCACATCTCCTGGACAGCAT 60.107 55.000 0.00 0.00 0.00 3.79
67 68 1.681166 GCACATCTCCTGGACAGCATT 60.681 52.381 0.00 0.00 0.00 3.56
68 69 2.719739 CACATCTCCTGGACAGCATTT 58.280 47.619 0.00 0.00 0.00 2.32
69 70 3.877559 CACATCTCCTGGACAGCATTTA 58.122 45.455 0.00 0.00 0.00 1.40
70 71 3.624861 CACATCTCCTGGACAGCATTTAC 59.375 47.826 0.00 0.00 0.00 2.01
71 72 3.264193 ACATCTCCTGGACAGCATTTACA 59.736 43.478 0.00 0.00 0.00 2.41
72 73 3.334583 TCTCCTGGACAGCATTTACAC 57.665 47.619 0.00 0.00 0.00 2.90
73 74 2.637382 TCTCCTGGACAGCATTTACACA 59.363 45.455 0.00 0.00 0.00 3.72
74 75 3.264193 TCTCCTGGACAGCATTTACACAT 59.736 43.478 0.00 0.00 0.00 3.21
75 76 3.609853 TCCTGGACAGCATTTACACATC 58.390 45.455 0.00 0.00 0.00 3.06
76 77 3.008923 TCCTGGACAGCATTTACACATCA 59.991 43.478 0.00 0.00 0.00 3.07
77 78 3.376234 CCTGGACAGCATTTACACATCAG 59.624 47.826 0.00 0.00 0.00 2.90
78 79 4.005650 CTGGACAGCATTTACACATCAGT 58.994 43.478 0.00 0.00 0.00 3.41
79 80 4.002982 TGGACAGCATTTACACATCAGTC 58.997 43.478 0.00 0.00 0.00 3.51
80 81 3.062639 GGACAGCATTTACACATCAGTCG 59.937 47.826 0.00 0.00 0.00 4.18
81 82 3.664107 ACAGCATTTACACATCAGTCGT 58.336 40.909 0.00 0.00 0.00 4.34
82 83 4.816392 ACAGCATTTACACATCAGTCGTA 58.184 39.130 0.00 0.00 0.00 3.43
83 84 5.419542 ACAGCATTTACACATCAGTCGTAT 58.580 37.500 0.00 0.00 0.00 3.06
84 85 5.291858 ACAGCATTTACACATCAGTCGTATG 59.708 40.000 0.00 0.00 0.00 2.39
85 86 4.811024 AGCATTTACACATCAGTCGTATGG 59.189 41.667 0.00 0.00 0.00 2.74
86 87 4.808895 GCATTTACACATCAGTCGTATGGA 59.191 41.667 0.00 0.00 0.00 3.41
87 88 5.293324 GCATTTACACATCAGTCGTATGGAA 59.707 40.000 0.00 0.00 0.00 3.53
88 89 6.183360 GCATTTACACATCAGTCGTATGGAAA 60.183 38.462 0.00 0.00 0.00 3.13
89 90 7.625395 GCATTTACACATCAGTCGTATGGAAAA 60.625 37.037 0.00 0.00 0.00 2.29
90 91 6.715344 TTACACATCAGTCGTATGGAAAAC 57.285 37.500 0.00 0.00 0.00 2.43
91 92 4.637276 ACACATCAGTCGTATGGAAAACA 58.363 39.130 0.00 0.00 0.00 2.83
92 93 4.451096 ACACATCAGTCGTATGGAAAACAC 59.549 41.667 0.00 0.00 0.00 3.32
93 94 4.000988 ACATCAGTCGTATGGAAAACACC 58.999 43.478 0.00 0.00 0.00 4.16
94 95 3.048337 TCAGTCGTATGGAAAACACCC 57.952 47.619 0.00 0.00 0.00 4.61
95 96 2.635915 TCAGTCGTATGGAAAACACCCT 59.364 45.455 0.00 0.00 0.00 4.34
96 97 2.742053 CAGTCGTATGGAAAACACCCTG 59.258 50.000 0.00 0.00 0.00 4.45
97 98 2.635915 AGTCGTATGGAAAACACCCTGA 59.364 45.455 0.00 0.00 0.00 3.86
98 99 3.263425 AGTCGTATGGAAAACACCCTGAT 59.737 43.478 0.00 0.00 0.00 2.90
99 100 4.007659 GTCGTATGGAAAACACCCTGATT 58.992 43.478 0.00 0.00 0.00 2.57
100 101 5.046159 AGTCGTATGGAAAACACCCTGATTA 60.046 40.000 0.00 0.00 0.00 1.75
101 102 5.064325 GTCGTATGGAAAACACCCTGATTAC 59.936 44.000 0.00 0.00 0.00 1.89
102 103 5.046159 TCGTATGGAAAACACCCTGATTACT 60.046 40.000 0.00 0.00 0.00 2.24
103 104 5.293569 CGTATGGAAAACACCCTGATTACTC 59.706 44.000 0.00 0.00 0.00 2.59
104 105 3.670625 TGGAAAACACCCTGATTACTCG 58.329 45.455 0.00 0.00 0.00 4.18
105 106 3.071892 TGGAAAACACCCTGATTACTCGT 59.928 43.478 0.00 0.00 0.00 4.18
106 107 4.283978 TGGAAAACACCCTGATTACTCGTA 59.716 41.667 0.00 0.00 0.00 3.43
107 108 5.046159 TGGAAAACACCCTGATTACTCGTAT 60.046 40.000 0.00 0.00 0.00 3.06
108 109 5.293569 GGAAAACACCCTGATTACTCGTATG 59.706 44.000 0.00 0.00 0.00 2.39
109 110 3.454371 ACACCCTGATTACTCGTATGC 57.546 47.619 0.00 0.00 0.00 3.14
110 111 3.031736 ACACCCTGATTACTCGTATGCT 58.968 45.455 0.00 0.00 0.00 3.79
111 112 4.212716 ACACCCTGATTACTCGTATGCTA 58.787 43.478 0.00 0.00 0.00 3.49
112 113 4.647853 ACACCCTGATTACTCGTATGCTAA 59.352 41.667 0.00 0.00 0.00 3.09
113 114 5.304614 ACACCCTGATTACTCGTATGCTAAT 59.695 40.000 0.00 0.00 0.00 1.73
114 115 6.492429 ACACCCTGATTACTCGTATGCTAATA 59.508 38.462 0.00 0.00 0.00 0.98
115 116 7.178628 ACACCCTGATTACTCGTATGCTAATAT 59.821 37.037 0.00 0.00 0.00 1.28
116 117 8.683615 CACCCTGATTACTCGTATGCTAATATA 58.316 37.037 0.00 0.00 0.00 0.86
117 118 9.422681 ACCCTGATTACTCGTATGCTAATATAT 57.577 33.333 0.00 0.00 0.00 0.86
146 147 9.001049 CAATTCACAAATTGTTGAATTGTGTTG 57.999 29.630 29.74 19.23 44.43 3.33
147 148 6.104439 TCACAAATTGTTGAATTGTGTTGC 57.896 33.333 15.09 0.00 38.20 4.17
148 149 4.956778 CACAAATTGTTGAATTGTGTTGCG 59.043 37.500 0.00 0.00 38.20 4.85
149 150 4.867047 ACAAATTGTTGAATTGTGTTGCGA 59.133 33.333 0.00 0.00 38.20 5.10
150 151 5.523188 ACAAATTGTTGAATTGTGTTGCGAT 59.477 32.000 0.00 0.00 38.20 4.58
151 152 5.579384 AATTGTTGAATTGTGTTGCGATG 57.421 34.783 0.00 0.00 30.17 3.84
152 153 3.010624 TGTTGAATTGTGTTGCGATGG 57.989 42.857 0.00 0.00 0.00 3.51
153 154 2.620585 TGTTGAATTGTGTTGCGATGGA 59.379 40.909 0.00 0.00 0.00 3.41
154 155 2.979813 GTTGAATTGTGTTGCGATGGAC 59.020 45.455 0.00 0.00 0.00 4.02
155 156 2.503331 TGAATTGTGTTGCGATGGACT 58.497 42.857 0.00 0.00 0.00 3.85
156 157 2.884012 TGAATTGTGTTGCGATGGACTT 59.116 40.909 0.00 0.00 0.00 3.01
157 158 4.068599 TGAATTGTGTTGCGATGGACTTA 58.931 39.130 0.00 0.00 0.00 2.24
158 159 4.699735 TGAATTGTGTTGCGATGGACTTAT 59.300 37.500 0.00 0.00 0.00 1.73
159 160 5.877564 TGAATTGTGTTGCGATGGACTTATA 59.122 36.000 0.00 0.00 0.00 0.98
160 161 5.991328 ATTGTGTTGCGATGGACTTATAG 57.009 39.130 0.00 0.00 0.00 1.31
161 162 4.729227 TGTGTTGCGATGGACTTATAGA 57.271 40.909 0.00 0.00 0.00 1.98
162 163 5.079689 TGTGTTGCGATGGACTTATAGAA 57.920 39.130 0.00 0.00 0.00 2.10
163 164 5.483811 TGTGTTGCGATGGACTTATAGAAA 58.516 37.500 0.00 0.00 0.00 2.52
164 165 5.350365 TGTGTTGCGATGGACTTATAGAAAC 59.650 40.000 0.00 0.00 0.00 2.78
165 166 5.350365 GTGTTGCGATGGACTTATAGAAACA 59.650 40.000 0.00 0.00 31.38 2.83
166 167 5.580691 TGTTGCGATGGACTTATAGAAACAG 59.419 40.000 0.00 0.00 29.60 3.16
167 168 5.592104 TGCGATGGACTTATAGAAACAGA 57.408 39.130 0.00 0.00 0.00 3.41
168 169 5.972935 TGCGATGGACTTATAGAAACAGAA 58.027 37.500 0.00 0.00 0.00 3.02
169 170 6.042777 TGCGATGGACTTATAGAAACAGAAG 58.957 40.000 0.00 0.00 0.00 2.85
170 171 6.043411 GCGATGGACTTATAGAAACAGAAGT 58.957 40.000 0.00 0.00 34.88 3.01
171 172 7.147966 TGCGATGGACTTATAGAAACAGAAGTA 60.148 37.037 0.00 0.00 32.37 2.24
172 173 7.167801 GCGATGGACTTATAGAAACAGAAGTAC 59.832 40.741 0.00 0.00 33.98 2.73
173 174 7.376336 CGATGGACTTATAGAAACAGAAGTACG 59.624 40.741 0.00 0.00 35.81 3.67
174 175 6.860080 TGGACTTATAGAAACAGAAGTACGG 58.140 40.000 0.00 0.00 35.81 4.02
175 176 6.660521 TGGACTTATAGAAACAGAAGTACGGA 59.339 38.462 0.00 0.00 35.81 4.69
176 177 7.341256 TGGACTTATAGAAACAGAAGTACGGAT 59.659 37.037 0.00 0.00 35.81 4.18
177 178 7.648510 GGACTTATAGAAACAGAAGTACGGATG 59.351 40.741 0.00 0.00 32.37 3.51
178 179 7.490000 ACTTATAGAAACAGAAGTACGGATGG 58.510 38.462 0.00 0.00 30.45 3.51
179 180 7.341256 ACTTATAGAAACAGAAGTACGGATGGA 59.659 37.037 0.00 0.00 30.45 3.41
180 181 4.884668 AGAAACAGAAGTACGGATGGAA 57.115 40.909 0.00 0.00 0.00 3.53
181 182 5.223449 AGAAACAGAAGTACGGATGGAAA 57.777 39.130 0.00 0.00 0.00 3.13
182 183 5.617252 AGAAACAGAAGTACGGATGGAAAA 58.383 37.500 0.00 0.00 0.00 2.29
183 184 5.469084 AGAAACAGAAGTACGGATGGAAAAC 59.531 40.000 0.00 0.00 0.00 2.43
184 185 3.323243 ACAGAAGTACGGATGGAAAACG 58.677 45.455 0.00 0.00 0.00 3.60
185 186 2.671396 CAGAAGTACGGATGGAAAACGG 59.329 50.000 0.00 0.00 0.00 4.44
186 187 2.564062 AGAAGTACGGATGGAAAACGGA 59.436 45.455 0.00 0.00 0.00 4.69
187 188 3.197116 AGAAGTACGGATGGAAAACGGAT 59.803 43.478 0.00 0.00 0.00 4.18
188 189 3.622166 AGTACGGATGGAAAACGGATT 57.378 42.857 0.00 0.00 0.00 3.01
189 190 3.267483 AGTACGGATGGAAAACGGATTG 58.733 45.455 0.00 0.00 0.00 2.67
190 191 2.194201 ACGGATGGAAAACGGATTGT 57.806 45.000 0.00 0.00 0.00 2.71
191 192 2.081462 ACGGATGGAAAACGGATTGTC 58.919 47.619 0.00 0.00 0.00 3.18
192 193 1.062002 CGGATGGAAAACGGATTGTCG 59.938 52.381 0.00 0.00 0.00 4.35
193 194 2.352388 GGATGGAAAACGGATTGTCGA 58.648 47.619 0.00 0.00 0.00 4.20
194 195 2.745281 GGATGGAAAACGGATTGTCGAA 59.255 45.455 0.00 0.00 0.00 3.71
195 196 3.189702 GGATGGAAAACGGATTGTCGAAA 59.810 43.478 0.00 0.00 0.00 3.46
196 197 3.612472 TGGAAAACGGATTGTCGAAAC 57.388 42.857 0.00 0.00 0.00 2.78
197 198 2.943690 TGGAAAACGGATTGTCGAAACA 59.056 40.909 0.00 0.00 0.00 2.83
211 212 6.429791 TGTCGAAACAAAACAGAGAAATGA 57.570 33.333 0.00 0.00 30.70 2.57
212 213 6.847400 TGTCGAAACAAAACAGAGAAATGAA 58.153 32.000 0.00 0.00 30.70 2.57
213 214 7.309177 TGTCGAAACAAAACAGAGAAATGAAA 58.691 30.769 0.00 0.00 30.70 2.69
214 215 7.810282 TGTCGAAACAAAACAGAGAAATGAAAA 59.190 29.630 0.00 0.00 30.70 2.29
215 216 8.643752 GTCGAAACAAAACAGAGAAATGAAAAA 58.356 29.630 0.00 0.00 0.00 1.94
240 241 6.526566 AATAGTCGGACAAAATAAGATCGC 57.473 37.500 11.27 0.00 0.00 4.58
241 242 3.195661 AGTCGGACAAAATAAGATCGCC 58.804 45.455 11.27 0.00 0.00 5.54
242 243 2.933906 GTCGGACAAAATAAGATCGCCA 59.066 45.455 2.62 0.00 0.00 5.69
243 244 3.560068 GTCGGACAAAATAAGATCGCCAT 59.440 43.478 2.62 0.00 0.00 4.40
244 245 3.559655 TCGGACAAAATAAGATCGCCATG 59.440 43.478 0.00 0.00 0.00 3.66
245 246 3.559655 CGGACAAAATAAGATCGCCATGA 59.440 43.478 0.00 0.00 0.00 3.07
246 247 4.214119 CGGACAAAATAAGATCGCCATGAT 59.786 41.667 0.00 0.00 41.06 2.45
256 257 4.778534 GATCGCCATGATCCATCAAAAT 57.221 40.909 0.00 0.00 46.55 1.82
257 258 5.130292 GATCGCCATGATCCATCAAAATT 57.870 39.130 0.00 0.00 46.55 1.82
258 259 6.258230 GATCGCCATGATCCATCAAAATTA 57.742 37.500 0.00 0.00 46.55 1.40
259 260 5.694231 TCGCCATGATCCATCAAAATTAG 57.306 39.130 0.00 0.00 40.69 1.73
260 261 5.375773 TCGCCATGATCCATCAAAATTAGA 58.624 37.500 0.00 0.00 40.69 2.10
261 262 5.827267 TCGCCATGATCCATCAAAATTAGAA 59.173 36.000 0.00 0.00 40.69 2.10
262 263 6.320926 TCGCCATGATCCATCAAAATTAGAAA 59.679 34.615 0.00 0.00 40.69 2.52
263 264 6.418819 CGCCATGATCCATCAAAATTAGAAAC 59.581 38.462 0.00 0.00 40.69 2.78
264 265 6.418819 GCCATGATCCATCAAAATTAGAAACG 59.581 38.462 0.00 0.00 40.69 3.60
265 266 6.919662 CCATGATCCATCAAAATTAGAAACGG 59.080 38.462 0.00 0.00 40.69 4.44
266 267 7.201812 CCATGATCCATCAAAATTAGAAACGGA 60.202 37.037 0.00 0.00 40.69 4.69
267 268 7.083875 TGATCCATCAAAATTAGAAACGGAC 57.916 36.000 0.00 0.00 33.08 4.79
268 269 5.890424 TCCATCAAAATTAGAAACGGACC 57.110 39.130 0.00 0.00 0.00 4.46
269 270 5.317808 TCCATCAAAATTAGAAACGGACCA 58.682 37.500 0.00 0.00 0.00 4.02
270 271 5.949354 TCCATCAAAATTAGAAACGGACCAT 59.051 36.000 0.00 0.00 0.00 3.55
271 272 7.113437 TCCATCAAAATTAGAAACGGACCATA 58.887 34.615 0.00 0.00 0.00 2.74
272 273 7.612244 TCCATCAAAATTAGAAACGGACCATAA 59.388 33.333 0.00 0.00 0.00 1.90
273 274 7.915397 CCATCAAAATTAGAAACGGACCATAAG 59.085 37.037 0.00 0.00 0.00 1.73
274 275 8.673711 CATCAAAATTAGAAACGGACCATAAGA 58.326 33.333 0.00 0.00 0.00 2.10
275 276 8.624367 TCAAAATTAGAAACGGACCATAAGAA 57.376 30.769 0.00 0.00 0.00 2.52
276 277 9.238368 TCAAAATTAGAAACGGACCATAAGAAT 57.762 29.630 0.00 0.00 0.00 2.40
277 278 9.503427 CAAAATTAGAAACGGACCATAAGAATC 57.497 33.333 0.00 0.00 0.00 2.52
278 279 8.801882 AAATTAGAAACGGACCATAAGAATCA 57.198 30.769 0.00 0.00 0.00 2.57
279 280 8.980481 AATTAGAAACGGACCATAAGAATCAT 57.020 30.769 0.00 0.00 0.00 2.45
280 281 8.980481 ATTAGAAACGGACCATAAGAATCATT 57.020 30.769 0.00 0.00 0.00 2.57
281 282 6.927294 AGAAACGGACCATAAGAATCATTC 57.073 37.500 0.00 0.00 0.00 2.67
282 283 6.653989 AGAAACGGACCATAAGAATCATTCT 58.346 36.000 0.00 0.00 43.15 2.40
300 301 6.218019 TCATTCTTTGAAAATTCTGTGCCAG 58.782 36.000 0.00 0.00 0.00 4.85
304 305 5.305128 TCTTTGAAAATTCTGTGCCAGGAAT 59.695 36.000 0.00 0.00 31.51 3.01
351 352 6.183360 CCAGGAAATTCATGTGTCTGGATTAC 60.183 42.308 6.89 0.00 41.87 1.89
352 353 6.600822 CAGGAAATTCATGTGTCTGGATTACT 59.399 38.462 0.00 0.00 0.00 2.24
353 354 7.770433 CAGGAAATTCATGTGTCTGGATTACTA 59.230 37.037 0.00 0.00 0.00 1.82
354 355 7.989741 AGGAAATTCATGTGTCTGGATTACTAG 59.010 37.037 0.00 0.00 0.00 2.57
355 356 7.770897 GGAAATTCATGTGTCTGGATTACTAGT 59.229 37.037 0.00 0.00 0.00 2.57
356 357 9.817809 GAAATTCATGTGTCTGGATTACTAGTA 57.182 33.333 0.00 0.00 0.00 1.82
404 405 1.071471 AAACGGCAGTCCAGTCAGG 59.929 57.895 0.00 0.00 39.47 3.86
418 419 0.741221 GTCAGGTGTCAAGCCCGATC 60.741 60.000 0.00 0.00 0.00 3.69
683 744 2.022129 GCTGGGTGTCGACACTTCG 61.022 63.158 39.01 28.48 45.73 3.79
684 745 2.022129 CTGGGTGTCGACACTTCGC 61.022 63.158 39.01 25.96 45.46 4.70
686 747 3.103911 GGTGTCGACACTTCGCCG 61.104 66.667 39.01 0.00 45.46 6.46
732 805 2.173382 CCGCGCCTCTCAAAAACG 59.827 61.111 0.00 0.00 0.00 3.60
736 809 1.082104 CGCCTCTCAAAAACGCCAC 60.082 57.895 0.00 0.00 0.00 5.01
737 810 1.507141 CGCCTCTCAAAAACGCCACT 61.507 55.000 0.00 0.00 0.00 4.00
749 822 2.514824 GCCACTCCGCCTCCATTC 60.515 66.667 0.00 0.00 0.00 2.67
750 823 3.036429 GCCACTCCGCCTCCATTCT 62.036 63.158 0.00 0.00 0.00 2.40
770 843 1.767692 CCCCATTTATCCTCCCCCG 59.232 63.158 0.00 0.00 0.00 5.73
771 844 1.065997 CCCCATTTATCCTCCCCCGT 61.066 60.000 0.00 0.00 0.00 5.28
773 846 0.034896 CCATTTATCCTCCCCCGTCG 59.965 60.000 0.00 0.00 0.00 5.12
806 879 2.429236 CTCGCTCGCACAACTCGT 60.429 61.111 0.00 0.00 0.00 4.18
870 1221 4.838486 GTCGGAGCTCGTCGGCAG 62.838 72.222 11.42 0.00 40.32 4.85
872 1223 3.893763 CGGAGCTCGTCGGCAGAT 61.894 66.667 7.83 0.00 34.17 2.90
884 1241 1.070445 GGCAGATCCCCGATGTCTG 59.930 63.158 0.00 0.00 41.69 3.51
890 1247 2.443632 AGATCCCCGATGTCTGTCTCTA 59.556 50.000 0.00 0.00 0.00 2.43
913 1270 1.134530 GTCAGTGCCGAGTCGAATCG 61.135 60.000 26.87 26.87 42.36 3.34
1093 1487 3.207669 GCGGATCCAAGCTGCCAG 61.208 66.667 13.41 0.00 0.00 4.85
1094 1488 3.207669 CGGATCCAAGCTGCCAGC 61.208 66.667 9.13 9.13 42.84 4.85
1350 1744 0.246635 CGGAGGTGTTCTCGGACATT 59.753 55.000 0.00 0.00 43.12 2.71
1353 1747 2.550208 GGAGGTGTTCTCGGACATTGTT 60.550 50.000 0.00 0.00 43.34 2.83
1563 1957 2.281070 CACGGCTCCTGCAACTGT 60.281 61.111 0.00 0.00 41.91 3.55
1692 2086 3.946201 AGCTGCGTGGTGGAAGCT 61.946 61.111 0.00 0.00 41.11 3.74
1704 2098 3.818787 GAAGCTGGCGGTGCATGG 61.819 66.667 0.00 0.00 0.00 3.66
1853 2250 3.060000 TGCTGTGCCTGATGCTGC 61.060 61.111 0.00 0.00 42.00 5.25
1881 2278 2.030893 CGATTTTGTTCTGCAGAGCCAA 60.031 45.455 25.45 22.81 0.00 4.52
1916 2313 0.107459 AGCCGAGGATTTGAAGAGGC 60.107 55.000 0.00 0.00 43.07 4.70
1917 2314 1.098129 GCCGAGGATTTGAAGAGGCC 61.098 60.000 0.00 0.00 37.32 5.19
2015 2412 2.777692 AGAAGGTTGTGGAGGTCAAGAA 59.222 45.455 0.00 0.00 0.00 2.52
2022 2419 4.771114 TGTGGAGGTCAAGAAAGAGAAA 57.229 40.909 0.00 0.00 0.00 2.52
2040 2437 5.187576 AGAGAAAGCTGATTCTGAAGTAGCT 59.812 40.000 19.41 19.41 45.87 3.32
2067 2464 4.093556 CACCGAGGAAAGAAGCATTTCTAC 59.906 45.833 0.00 3.89 42.80 2.59
2325 2722 1.133482 CAACCCAAGAAGGAGGTGGTT 60.133 52.381 0.00 0.00 41.22 3.67
2406 2803 1.945819 GCAACCGATCTCCTGAAGCAA 60.946 52.381 0.00 0.00 0.00 3.91
2433 2830 1.653115 GCATGCATCTGCTACTGGC 59.347 57.895 14.21 0.00 42.66 4.85
2542 2939 1.404748 CCATATCACGGTTTGCATGCA 59.595 47.619 18.46 18.46 0.00 3.96
2548 2945 0.241749 ACGGTTTGCATGCACTGATG 59.758 50.000 22.58 11.99 0.00 3.07
2550 2947 1.705256 GGTTTGCATGCACTGATGTG 58.295 50.000 22.58 0.00 46.37 3.21
2673 3070 2.132762 GTTCACATTGTCGACTTCGGT 58.867 47.619 17.92 6.99 40.29 4.69
2726 3123 3.412237 TCAACGGCTAAGTAAAAGGCT 57.588 42.857 0.00 0.00 37.38 4.58
2847 3244 5.877012 TGATTATGCTCAGACCTTCAAAGTC 59.123 40.000 0.00 0.00 34.31 3.01
2890 3287 3.374988 CGCATCTCAATTTGAGGCTGTTA 59.625 43.478 22.86 6.19 44.39 2.41
3066 3463 3.314693 TGGGGTCACTAATGGATCCTAC 58.685 50.000 14.23 0.04 35.78 3.18
3183 3580 1.206610 GAGAGGCTGCTCATTGAGTCA 59.793 52.381 14.90 11.79 35.01 3.41
3213 3610 2.614057 CAGTCGGGAGGCAATTAATGTC 59.386 50.000 0.00 0.00 36.50 3.06
3456 3853 0.823769 GGAAGGCGAATCCCCAATCC 60.824 60.000 0.00 0.00 34.51 3.01
3568 3967 1.028905 TTTGAACCGGCACCAAAGAG 58.971 50.000 0.00 0.00 0.00 2.85
3573 3972 0.818040 ACCGGCACCAAAGAGACAAC 60.818 55.000 0.00 0.00 0.00 3.32
3668 4069 0.962356 GCCTGTTGTATGTGCTGCCT 60.962 55.000 0.00 0.00 0.00 4.75
3728 4130 2.620627 GGTGGGCAGGCTACTTATGTTT 60.621 50.000 10.46 0.00 0.00 2.83
3812 4214 9.561069 AGAGTACAATTCAGTAATGTTTCAAGT 57.439 29.630 0.00 0.00 0.00 3.16
3890 4293 4.918810 ACACCTTGTCTTGATTTCCAAC 57.081 40.909 0.00 0.00 0.00 3.77
3908 4311 4.943705 TCCAACATGTAAAGAATGCCTCTC 59.056 41.667 0.00 0.00 31.02 3.20
3968 4371 4.451096 TGTTTGGTCTTTCGTGCTTATCTC 59.549 41.667 0.00 0.00 0.00 2.75
3995 4398 4.852134 TCTTGTTTTACATGCTGCACAT 57.148 36.364 3.57 0.00 40.66 3.21
4001 4404 4.987408 TTTACATGCTGCACATTGCTAT 57.013 36.364 3.57 0.00 45.31 2.97
4011 4414 2.353889 GCACATTGCTATCAGTCACCAG 59.646 50.000 0.00 0.00 40.96 4.00
4100 4503 8.928733 GTTGTACCTAACGAATAATGTTTGAGA 58.071 33.333 0.00 0.00 0.00 3.27
4130 4535 9.366216 GTAAAATGAAATACAAAATCCCAGTCC 57.634 33.333 0.00 0.00 0.00 3.85
4145 4550 2.263077 CAGTCCGTTGAGTGACATAGC 58.737 52.381 0.00 0.00 43.43 2.97
4181 4586 3.658757 TTGCCCTTTCACTTATTGTGC 57.341 42.857 0.00 0.00 45.81 4.57
4195 4601 3.806625 ATTGTGCTGTGAAAAGTGCTT 57.193 38.095 0.00 0.00 0.00 3.91
4227 4633 5.398581 GGTTCCTATGATACATTTGGACCCA 60.399 44.000 0.00 0.00 0.00 4.51
4325 4732 5.914033 TGATACTCCCTCCGTAAAGAAATG 58.086 41.667 0.00 0.00 0.00 2.32
4338 4745 7.062605 TCCGTAAAGAAATGTAAGAGCGTTTAG 59.937 37.037 0.00 0.00 0.00 1.85
4387 4794 3.709987 CAAACTGGGTTCTTGAGCTTTG 58.290 45.455 0.00 0.00 0.00 2.77
4419 4826 3.149196 TCATTTTCCAGTCTGCCTTGTC 58.851 45.455 0.00 0.00 0.00 3.18
4456 4864 3.251004 GTCCAGTGTCCACATTCAGAAAC 59.749 47.826 0.00 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.655974 TGCTGGATCAAAGCCATATGTTTAA 59.344 36.000 14.94 0.00 40.06 1.52
1 2 5.199723 TGCTGGATCAAAGCCATATGTTTA 58.800 37.500 14.94 0.00 40.06 2.01
2 3 4.025360 TGCTGGATCAAAGCCATATGTTT 58.975 39.130 14.94 0.00 40.06 2.83
3 4 3.634504 TGCTGGATCAAAGCCATATGTT 58.365 40.909 14.94 0.00 40.06 2.71
4 5 3.220110 CTGCTGGATCAAAGCCATATGT 58.780 45.455 14.94 0.00 40.06 2.29
5 6 3.220110 ACTGCTGGATCAAAGCCATATG 58.780 45.455 14.94 0.00 40.06 1.78
6 7 3.117776 TGACTGCTGGATCAAAGCCATAT 60.118 43.478 14.94 1.01 40.06 1.78
7 8 2.239402 TGACTGCTGGATCAAAGCCATA 59.761 45.455 14.94 0.00 40.06 2.74
8 9 1.005097 TGACTGCTGGATCAAAGCCAT 59.995 47.619 14.94 5.18 40.06 4.40
9 10 0.401356 TGACTGCTGGATCAAAGCCA 59.599 50.000 14.94 5.42 40.06 4.75
10 11 0.807496 GTGACTGCTGGATCAAAGCC 59.193 55.000 14.94 3.25 40.06 4.35
11 12 0.445436 CGTGACTGCTGGATCAAAGC 59.555 55.000 11.65 11.65 41.22 3.51
12 13 1.800805 ACGTGACTGCTGGATCAAAG 58.199 50.000 0.00 0.00 0.00 2.77
13 14 2.143122 GAACGTGACTGCTGGATCAAA 58.857 47.619 0.00 0.00 0.00 2.69
14 15 1.069978 TGAACGTGACTGCTGGATCAA 59.930 47.619 0.00 0.00 0.00 2.57
15 16 0.678950 TGAACGTGACTGCTGGATCA 59.321 50.000 0.00 0.00 0.00 2.92
16 17 1.071605 GTGAACGTGACTGCTGGATC 58.928 55.000 0.00 0.00 0.00 3.36
17 18 0.320771 GGTGAACGTGACTGCTGGAT 60.321 55.000 0.00 0.00 0.00 3.41
18 19 1.069090 GGTGAACGTGACTGCTGGA 59.931 57.895 0.00 0.00 0.00 3.86
19 20 1.961277 GGGTGAACGTGACTGCTGG 60.961 63.158 0.00 0.00 0.00 4.85
20 21 1.227527 TGGGTGAACGTGACTGCTG 60.228 57.895 0.00 0.00 0.00 4.41
21 22 1.227556 GTGGGTGAACGTGACTGCT 60.228 57.895 0.00 0.00 0.00 4.24
22 23 2.251642 GGTGGGTGAACGTGACTGC 61.252 63.158 0.00 0.00 0.00 4.40
23 24 0.250295 ATGGTGGGTGAACGTGACTG 60.250 55.000 0.00 0.00 0.00 3.51
24 25 1.001633 GTATGGTGGGTGAACGTGACT 59.998 52.381 0.00 0.00 0.00 3.41
25 26 1.270412 TGTATGGTGGGTGAACGTGAC 60.270 52.381 0.00 0.00 0.00 3.67
26 27 1.049402 TGTATGGTGGGTGAACGTGA 58.951 50.000 0.00 0.00 0.00 4.35
27 28 1.737236 CATGTATGGTGGGTGAACGTG 59.263 52.381 0.00 0.00 0.00 4.49
28 29 1.948611 GCATGTATGGTGGGTGAACGT 60.949 52.381 0.00 0.00 0.00 3.99
29 30 0.732571 GCATGTATGGTGGGTGAACG 59.267 55.000 0.00 0.00 0.00 3.95
30 31 1.472480 GTGCATGTATGGTGGGTGAAC 59.528 52.381 0.00 0.00 0.00 3.18
31 32 1.074566 TGTGCATGTATGGTGGGTGAA 59.925 47.619 0.00 0.00 0.00 3.18
32 33 0.695347 TGTGCATGTATGGTGGGTGA 59.305 50.000 0.00 0.00 0.00 4.02
33 34 1.677576 GATGTGCATGTATGGTGGGTG 59.322 52.381 0.00 0.00 0.00 4.61
34 35 1.565759 AGATGTGCATGTATGGTGGGT 59.434 47.619 0.00 0.00 0.00 4.51
35 36 2.224606 GAGATGTGCATGTATGGTGGG 58.775 52.381 0.00 0.00 0.00 4.61
36 37 2.158711 AGGAGATGTGCATGTATGGTGG 60.159 50.000 0.00 0.00 0.00 4.61
37 38 2.876550 CAGGAGATGTGCATGTATGGTG 59.123 50.000 0.00 0.00 0.00 4.17
38 39 2.158711 CCAGGAGATGTGCATGTATGGT 60.159 50.000 0.00 0.00 0.00 3.55
39 40 2.105306 TCCAGGAGATGTGCATGTATGG 59.895 50.000 0.00 6.68 0.00 2.74
40 41 3.136763 GTCCAGGAGATGTGCATGTATG 58.863 50.000 0.00 0.00 0.00 2.39
41 42 2.773661 TGTCCAGGAGATGTGCATGTAT 59.226 45.455 0.00 0.00 0.00 2.29
42 43 2.169144 CTGTCCAGGAGATGTGCATGTA 59.831 50.000 0.00 0.00 0.00 2.29
43 44 0.986527 TGTCCAGGAGATGTGCATGT 59.013 50.000 0.00 0.00 0.00 3.21
44 45 1.664873 CTGTCCAGGAGATGTGCATG 58.335 55.000 0.00 0.00 0.00 4.06
45 46 0.107312 GCTGTCCAGGAGATGTGCAT 60.107 55.000 0.00 0.00 0.00 3.96
46 47 1.297689 GCTGTCCAGGAGATGTGCA 59.702 57.895 0.00 0.00 0.00 4.57
47 48 0.107312 ATGCTGTCCAGGAGATGTGC 60.107 55.000 0.00 0.00 30.57 4.57
48 49 2.414994 AATGCTGTCCAGGAGATGTG 57.585 50.000 0.00 0.00 30.57 3.21
49 50 3.264193 TGTAAATGCTGTCCAGGAGATGT 59.736 43.478 0.00 0.00 30.57 3.06
50 51 3.624861 GTGTAAATGCTGTCCAGGAGATG 59.375 47.826 0.00 0.00 30.57 2.90
51 52 3.264193 TGTGTAAATGCTGTCCAGGAGAT 59.736 43.478 0.00 0.00 30.57 2.75
52 53 2.637382 TGTGTAAATGCTGTCCAGGAGA 59.363 45.455 0.00 0.00 30.57 3.71
53 54 3.057969 TGTGTAAATGCTGTCCAGGAG 57.942 47.619 0.00 0.00 30.57 3.69
54 55 3.008923 TGATGTGTAAATGCTGTCCAGGA 59.991 43.478 0.00 0.00 0.00 3.86
55 56 3.346315 TGATGTGTAAATGCTGTCCAGG 58.654 45.455 0.00 0.00 0.00 4.45
56 57 4.005650 ACTGATGTGTAAATGCTGTCCAG 58.994 43.478 0.00 0.00 0.00 3.86
57 58 4.002982 GACTGATGTGTAAATGCTGTCCA 58.997 43.478 0.00 0.00 0.00 4.02
58 59 3.062639 CGACTGATGTGTAAATGCTGTCC 59.937 47.826 0.00 0.00 0.00 4.02
59 60 3.679980 ACGACTGATGTGTAAATGCTGTC 59.320 43.478 0.00 0.00 0.00 3.51
60 61 3.664107 ACGACTGATGTGTAAATGCTGT 58.336 40.909 0.00 0.00 0.00 4.40
61 62 5.277011 CCATACGACTGATGTGTAAATGCTG 60.277 44.000 0.00 0.00 0.00 4.41
62 63 4.811024 CCATACGACTGATGTGTAAATGCT 59.189 41.667 0.00 0.00 0.00 3.79
63 64 4.808895 TCCATACGACTGATGTGTAAATGC 59.191 41.667 0.00 0.00 0.00 3.56
64 65 6.902224 TTCCATACGACTGATGTGTAAATG 57.098 37.500 0.00 0.00 0.00 2.32
65 66 7.389330 TGTTTTCCATACGACTGATGTGTAAAT 59.611 33.333 0.00 0.00 0.00 1.40
66 67 6.706716 TGTTTTCCATACGACTGATGTGTAAA 59.293 34.615 0.00 0.00 0.00 2.01
67 68 6.146510 GTGTTTTCCATACGACTGATGTGTAA 59.853 38.462 0.00 0.00 0.00 2.41
68 69 5.636121 GTGTTTTCCATACGACTGATGTGTA 59.364 40.000 0.00 0.00 0.00 2.90
69 70 4.451096 GTGTTTTCCATACGACTGATGTGT 59.549 41.667 0.00 0.00 0.00 3.72
70 71 4.142902 GGTGTTTTCCATACGACTGATGTG 60.143 45.833 0.00 0.00 0.00 3.21
71 72 4.000988 GGTGTTTTCCATACGACTGATGT 58.999 43.478 0.00 0.00 0.00 3.06
72 73 3.374058 GGGTGTTTTCCATACGACTGATG 59.626 47.826 0.00 0.00 0.00 3.07
73 74 3.263425 AGGGTGTTTTCCATACGACTGAT 59.737 43.478 0.00 0.00 0.00 2.90
74 75 2.635915 AGGGTGTTTTCCATACGACTGA 59.364 45.455 0.00 0.00 0.00 3.41
75 76 2.742053 CAGGGTGTTTTCCATACGACTG 59.258 50.000 0.00 0.00 0.00 3.51
76 77 2.635915 TCAGGGTGTTTTCCATACGACT 59.364 45.455 0.00 0.00 0.00 4.18
77 78 3.048337 TCAGGGTGTTTTCCATACGAC 57.952 47.619 0.00 0.00 0.00 4.34
78 79 3.992943 ATCAGGGTGTTTTCCATACGA 57.007 42.857 0.00 0.00 0.00 3.43
79 80 5.183228 AGTAATCAGGGTGTTTTCCATACG 58.817 41.667 0.00 0.00 0.00 3.06
80 81 5.293569 CGAGTAATCAGGGTGTTTTCCATAC 59.706 44.000 0.00 0.00 0.00 2.39
81 82 5.046159 ACGAGTAATCAGGGTGTTTTCCATA 60.046 40.000 0.00 0.00 0.00 2.74
82 83 4.261801 CGAGTAATCAGGGTGTTTTCCAT 58.738 43.478 0.00 0.00 0.00 3.41
83 84 3.071892 ACGAGTAATCAGGGTGTTTTCCA 59.928 43.478 0.00 0.00 0.00 3.53
84 85 3.671716 ACGAGTAATCAGGGTGTTTTCC 58.328 45.455 0.00 0.00 0.00 3.13
85 86 5.220605 GCATACGAGTAATCAGGGTGTTTTC 60.221 44.000 0.00 0.00 0.00 2.29
86 87 4.634443 GCATACGAGTAATCAGGGTGTTTT 59.366 41.667 0.00 0.00 0.00 2.43
87 88 4.081087 AGCATACGAGTAATCAGGGTGTTT 60.081 41.667 0.00 0.00 0.00 2.83
88 89 3.451178 AGCATACGAGTAATCAGGGTGTT 59.549 43.478 0.00 0.00 0.00 3.32
89 90 3.031736 AGCATACGAGTAATCAGGGTGT 58.968 45.455 0.00 0.00 0.00 4.16
90 91 3.735237 AGCATACGAGTAATCAGGGTG 57.265 47.619 0.00 0.00 0.00 4.61
91 92 7.719871 ATATTAGCATACGAGTAATCAGGGT 57.280 36.000 0.00 0.00 0.00 4.34
121 122 7.697291 GCAACACAATTCAACAATTTGTGAATT 59.303 29.630 21.34 21.34 37.95 2.17
122 123 7.188157 GCAACACAATTCAACAATTTGTGAAT 58.812 30.769 18.67 15.44 36.06 2.57
123 124 6.541086 GCAACACAATTCAACAATTTGTGAA 58.459 32.000 18.67 9.29 36.06 3.18
124 125 5.220359 CGCAACACAATTCAACAATTTGTGA 60.220 36.000 18.67 0.64 36.06 3.58
125 126 4.956778 CGCAACACAATTCAACAATTTGTG 59.043 37.500 12.12 12.12 37.22 3.33
126 127 4.867047 TCGCAACACAATTCAACAATTTGT 59.133 33.333 0.00 0.00 34.02 2.83
127 128 5.386810 TCGCAACACAATTCAACAATTTG 57.613 34.783 0.00 0.00 28.97 2.32
128 129 5.050227 CCATCGCAACACAATTCAACAATTT 60.050 36.000 0.00 0.00 28.97 1.82
129 130 4.448395 CCATCGCAACACAATTCAACAATT 59.552 37.500 0.00 0.00 31.91 2.32
130 131 3.989167 CCATCGCAACACAATTCAACAAT 59.011 39.130 0.00 0.00 0.00 2.71
131 132 3.067320 TCCATCGCAACACAATTCAACAA 59.933 39.130 0.00 0.00 0.00 2.83
132 133 2.620585 TCCATCGCAACACAATTCAACA 59.379 40.909 0.00 0.00 0.00 3.33
133 134 2.979813 GTCCATCGCAACACAATTCAAC 59.020 45.455 0.00 0.00 0.00 3.18
134 135 2.884012 AGTCCATCGCAACACAATTCAA 59.116 40.909 0.00 0.00 0.00 2.69
135 136 2.503331 AGTCCATCGCAACACAATTCA 58.497 42.857 0.00 0.00 0.00 2.57
136 137 3.559238 AAGTCCATCGCAACACAATTC 57.441 42.857 0.00 0.00 0.00 2.17
137 138 6.112734 TCTATAAGTCCATCGCAACACAATT 58.887 36.000 0.00 0.00 0.00 2.32
138 139 5.670485 TCTATAAGTCCATCGCAACACAAT 58.330 37.500 0.00 0.00 0.00 2.71
139 140 5.079689 TCTATAAGTCCATCGCAACACAA 57.920 39.130 0.00 0.00 0.00 3.33
140 141 4.729227 TCTATAAGTCCATCGCAACACA 57.271 40.909 0.00 0.00 0.00 3.72
141 142 5.350365 TGTTTCTATAAGTCCATCGCAACAC 59.650 40.000 0.00 0.00 0.00 3.32
142 143 5.483811 TGTTTCTATAAGTCCATCGCAACA 58.516 37.500 0.00 0.00 0.00 3.33
143 144 5.810587 TCTGTTTCTATAAGTCCATCGCAAC 59.189 40.000 0.00 0.00 0.00 4.17
144 145 5.972935 TCTGTTTCTATAAGTCCATCGCAA 58.027 37.500 0.00 0.00 0.00 4.85
145 146 5.592104 TCTGTTTCTATAAGTCCATCGCA 57.408 39.130 0.00 0.00 0.00 5.10
146 147 6.043411 ACTTCTGTTTCTATAAGTCCATCGC 58.957 40.000 0.00 0.00 0.00 4.58
147 148 7.376336 CGTACTTCTGTTTCTATAAGTCCATCG 59.624 40.741 0.00 0.00 34.23 3.84
148 149 7.648510 CCGTACTTCTGTTTCTATAAGTCCATC 59.351 40.741 0.00 0.00 34.23 3.51
149 150 7.341256 TCCGTACTTCTGTTTCTATAAGTCCAT 59.659 37.037 0.00 0.00 34.23 3.41
150 151 6.660521 TCCGTACTTCTGTTTCTATAAGTCCA 59.339 38.462 0.00 0.00 34.23 4.02
151 152 7.093322 TCCGTACTTCTGTTTCTATAAGTCC 57.907 40.000 0.00 0.00 34.23 3.85
152 153 7.648510 CCATCCGTACTTCTGTTTCTATAAGTC 59.351 40.741 0.00 0.00 34.23 3.01
153 154 7.341256 TCCATCCGTACTTCTGTTTCTATAAGT 59.659 37.037 0.00 0.00 36.26 2.24
154 155 7.713750 TCCATCCGTACTTCTGTTTCTATAAG 58.286 38.462 0.00 0.00 0.00 1.73
155 156 7.649533 TCCATCCGTACTTCTGTTTCTATAA 57.350 36.000 0.00 0.00 0.00 0.98
156 157 7.649533 TTCCATCCGTACTTCTGTTTCTATA 57.350 36.000 0.00 0.00 0.00 1.31
157 158 6.540438 TTCCATCCGTACTTCTGTTTCTAT 57.460 37.500 0.00 0.00 0.00 1.98
158 159 5.988310 TTCCATCCGTACTTCTGTTTCTA 57.012 39.130 0.00 0.00 0.00 2.10
159 160 4.884668 TTCCATCCGTACTTCTGTTTCT 57.115 40.909 0.00 0.00 0.00 2.52
160 161 5.614013 CGTTTTCCATCCGTACTTCTGTTTC 60.614 44.000 0.00 0.00 0.00 2.78
161 162 4.212636 CGTTTTCCATCCGTACTTCTGTTT 59.787 41.667 0.00 0.00 0.00 2.83
162 163 3.744426 CGTTTTCCATCCGTACTTCTGTT 59.256 43.478 0.00 0.00 0.00 3.16
163 164 3.323243 CGTTTTCCATCCGTACTTCTGT 58.677 45.455 0.00 0.00 0.00 3.41
164 165 2.671396 CCGTTTTCCATCCGTACTTCTG 59.329 50.000 0.00 0.00 0.00 3.02
165 166 2.564062 TCCGTTTTCCATCCGTACTTCT 59.436 45.455 0.00 0.00 0.00 2.85
166 167 2.963432 TCCGTTTTCCATCCGTACTTC 58.037 47.619 0.00 0.00 0.00 3.01
167 168 3.622166 ATCCGTTTTCCATCCGTACTT 57.378 42.857 0.00 0.00 0.00 2.24
168 169 3.267483 CAATCCGTTTTCCATCCGTACT 58.733 45.455 0.00 0.00 0.00 2.73
169 170 3.004862 ACAATCCGTTTTCCATCCGTAC 58.995 45.455 0.00 0.00 0.00 3.67
170 171 3.264104 GACAATCCGTTTTCCATCCGTA 58.736 45.455 0.00 0.00 0.00 4.02
171 172 2.081462 GACAATCCGTTTTCCATCCGT 58.919 47.619 0.00 0.00 0.00 4.69
172 173 1.062002 CGACAATCCGTTTTCCATCCG 59.938 52.381 0.00 0.00 0.00 4.18
173 174 2.352388 TCGACAATCCGTTTTCCATCC 58.648 47.619 0.00 0.00 0.00 3.51
174 175 4.156182 GTTTCGACAATCCGTTTTCCATC 58.844 43.478 0.00 0.00 0.00 3.51
175 176 3.566322 TGTTTCGACAATCCGTTTTCCAT 59.434 39.130 0.00 0.00 0.00 3.41
176 177 2.943690 TGTTTCGACAATCCGTTTTCCA 59.056 40.909 0.00 0.00 0.00 3.53
177 178 3.612472 TGTTTCGACAATCCGTTTTCC 57.388 42.857 0.00 0.00 0.00 3.13
178 179 5.286558 TGTTTTGTTTCGACAATCCGTTTTC 59.713 36.000 0.00 0.00 0.00 2.29
179 180 5.162075 TGTTTTGTTTCGACAATCCGTTTT 58.838 33.333 0.00 0.00 0.00 2.43
180 181 4.734917 TGTTTTGTTTCGACAATCCGTTT 58.265 34.783 0.00 0.00 0.00 3.60
181 182 4.095185 TCTGTTTTGTTTCGACAATCCGTT 59.905 37.500 0.00 0.00 0.00 4.44
182 183 3.623960 TCTGTTTTGTTTCGACAATCCGT 59.376 39.130 0.00 0.00 0.00 4.69
183 184 4.025229 TCTCTGTTTTGTTTCGACAATCCG 60.025 41.667 0.00 0.00 0.00 4.18
184 185 5.418310 TCTCTGTTTTGTTTCGACAATCC 57.582 39.130 0.00 0.00 0.00 3.01
185 186 7.643764 TCATTTCTCTGTTTTGTTTCGACAATC 59.356 33.333 0.00 0.00 0.00 2.67
186 187 7.479980 TCATTTCTCTGTTTTGTTTCGACAAT 58.520 30.769 0.00 0.00 0.00 2.71
187 188 6.847400 TCATTTCTCTGTTTTGTTTCGACAA 58.153 32.000 0.00 0.00 0.00 3.18
188 189 6.429791 TCATTTCTCTGTTTTGTTTCGACA 57.570 33.333 0.00 0.00 0.00 4.35
189 190 7.734538 TTTCATTTCTCTGTTTTGTTTCGAC 57.265 32.000 0.00 0.00 0.00 4.20
190 191 8.749841 TTTTTCATTTCTCTGTTTTGTTTCGA 57.250 26.923 0.00 0.00 0.00 3.71
214 215 7.908601 GCGATCTTATTTTGTCCGACTATTTTT 59.091 33.333 0.00 0.00 0.00 1.94
215 216 7.407337 GCGATCTTATTTTGTCCGACTATTTT 58.593 34.615 0.00 0.00 0.00 1.82
216 217 6.018180 GGCGATCTTATTTTGTCCGACTATTT 60.018 38.462 0.00 0.00 0.00 1.40
217 218 5.465724 GGCGATCTTATTTTGTCCGACTATT 59.534 40.000 0.00 0.00 0.00 1.73
218 219 4.989168 GGCGATCTTATTTTGTCCGACTAT 59.011 41.667 0.00 0.00 0.00 2.12
219 220 4.142116 TGGCGATCTTATTTTGTCCGACTA 60.142 41.667 0.00 0.00 0.00 2.59
220 221 3.195661 GGCGATCTTATTTTGTCCGACT 58.804 45.455 0.00 0.00 0.00 4.18
221 222 2.933906 TGGCGATCTTATTTTGTCCGAC 59.066 45.455 0.00 0.00 0.00 4.79
222 223 3.254470 TGGCGATCTTATTTTGTCCGA 57.746 42.857 0.00 0.00 0.00 4.55
223 224 3.559655 TCATGGCGATCTTATTTTGTCCG 59.440 43.478 0.00 0.00 0.00 4.79
224 225 5.693814 GATCATGGCGATCTTATTTTGTCC 58.306 41.667 0.00 0.00 46.16 4.02
236 237 6.005823 TCTAATTTTGATGGATCATGGCGAT 58.994 36.000 0.00 0.00 36.56 4.58
237 238 5.375773 TCTAATTTTGATGGATCATGGCGA 58.624 37.500 0.00 0.00 36.56 5.54
238 239 5.694231 TCTAATTTTGATGGATCATGGCG 57.306 39.130 0.00 0.00 36.56 5.69
239 240 6.418819 CGTTTCTAATTTTGATGGATCATGGC 59.581 38.462 0.00 0.00 36.56 4.40
240 241 6.919662 CCGTTTCTAATTTTGATGGATCATGG 59.080 38.462 0.00 0.00 36.56 3.66
241 242 7.645340 GTCCGTTTCTAATTTTGATGGATCATG 59.355 37.037 0.00 0.00 36.56 3.07
242 243 7.201821 GGTCCGTTTCTAATTTTGATGGATCAT 60.202 37.037 0.00 0.00 36.56 2.45
243 244 6.094881 GGTCCGTTTCTAATTTTGATGGATCA 59.905 38.462 0.00 0.00 34.44 2.92
244 245 6.094881 TGGTCCGTTTCTAATTTTGATGGATC 59.905 38.462 0.00 0.00 0.00 3.36
245 246 5.949354 TGGTCCGTTTCTAATTTTGATGGAT 59.051 36.000 0.00 0.00 0.00 3.41
246 247 5.317808 TGGTCCGTTTCTAATTTTGATGGA 58.682 37.500 0.00 0.00 0.00 3.41
247 248 5.637006 TGGTCCGTTTCTAATTTTGATGG 57.363 39.130 0.00 0.00 0.00 3.51
248 249 8.673711 TCTTATGGTCCGTTTCTAATTTTGATG 58.326 33.333 0.00 0.00 0.00 3.07
249 250 8.801882 TCTTATGGTCCGTTTCTAATTTTGAT 57.198 30.769 0.00 0.00 0.00 2.57
250 251 8.624367 TTCTTATGGTCCGTTTCTAATTTTGA 57.376 30.769 0.00 0.00 0.00 2.69
251 252 9.503427 GATTCTTATGGTCCGTTTCTAATTTTG 57.497 33.333 0.00 0.00 0.00 2.44
252 253 9.238368 TGATTCTTATGGTCCGTTTCTAATTTT 57.762 29.630 0.00 0.00 0.00 1.82
253 254 8.801882 TGATTCTTATGGTCCGTTTCTAATTT 57.198 30.769 0.00 0.00 0.00 1.82
254 255 8.980481 ATGATTCTTATGGTCCGTTTCTAATT 57.020 30.769 0.00 0.00 0.00 1.40
255 256 8.980481 AATGATTCTTATGGTCCGTTTCTAAT 57.020 30.769 0.00 0.00 0.00 1.73
256 257 8.265055 AGAATGATTCTTATGGTCCGTTTCTAA 58.735 33.333 0.97 0.00 36.36 2.10
257 258 7.792032 AGAATGATTCTTATGGTCCGTTTCTA 58.208 34.615 0.97 0.00 36.36 2.10
258 259 6.653989 AGAATGATTCTTATGGTCCGTTTCT 58.346 36.000 0.97 0.00 36.36 2.52
259 260 6.927294 AGAATGATTCTTATGGTCCGTTTC 57.073 37.500 0.97 0.00 36.36 2.78
272 273 7.601508 GGCACAGAATTTTCAAAGAATGATTCT 59.398 33.333 0.97 0.97 43.15 2.40
273 274 7.385752 TGGCACAGAATTTTCAAAGAATGATTC 59.614 33.333 0.00 0.00 38.03 2.52
274 275 7.218614 TGGCACAGAATTTTCAAAGAATGATT 58.781 30.769 0.00 0.00 38.03 2.57
275 276 6.761312 TGGCACAGAATTTTCAAAGAATGAT 58.239 32.000 0.00 0.00 38.03 2.45
276 277 6.159299 TGGCACAGAATTTTCAAAGAATGA 57.841 33.333 0.00 0.00 35.85 2.57
351 352 2.286536 GCTCCGCGACTCTTTCTACTAG 60.287 54.545 8.23 0.00 0.00 2.57
352 353 1.669779 GCTCCGCGACTCTTTCTACTA 59.330 52.381 8.23 0.00 0.00 1.82
353 354 0.452585 GCTCCGCGACTCTTTCTACT 59.547 55.000 8.23 0.00 0.00 2.57
354 355 0.452585 AGCTCCGCGACTCTTTCTAC 59.547 55.000 8.23 0.00 0.00 2.59
355 356 0.452184 CAGCTCCGCGACTCTTTCTA 59.548 55.000 8.23 0.00 0.00 2.10
356 357 1.214062 CAGCTCCGCGACTCTTTCT 59.786 57.895 8.23 0.00 0.00 2.52
375 376 0.593128 CTGCCGTTTGACTTCCTTGG 59.407 55.000 0.00 0.00 0.00 3.61
379 380 0.534203 TGGACTGCCGTTTGACTTCC 60.534 55.000 0.00 0.00 36.79 3.46
404 405 3.195698 GGCGATCGGGCTTGACAC 61.196 66.667 18.30 0.00 38.40 3.67
418 419 0.592637 TGTGTTGATTGCTCAAGGCG 59.407 50.000 0.00 0.00 41.96 5.52
732 805 2.514824 GAATGGAGGCGGAGTGGC 60.515 66.667 0.00 0.00 45.27 5.01
736 809 2.812619 GGGGAGAATGGAGGCGGAG 61.813 68.421 0.00 0.00 0.00 4.63
737 810 2.768344 GGGGAGAATGGAGGCGGA 60.768 66.667 0.00 0.00 0.00 5.54
749 822 1.076438 GGGGAGGATAAATGGGGGAG 58.924 60.000 0.00 0.00 0.00 4.30
750 823 0.404346 GGGGGAGGATAAATGGGGGA 60.404 60.000 0.00 0.00 0.00 4.81
787 860 3.832171 GAGTTGTGCGAGCGAGCG 61.832 66.667 0.00 0.00 40.67 5.03
788 861 3.832171 CGAGTTGTGCGAGCGAGC 61.832 66.667 0.00 0.00 37.71 5.03
789 862 2.429236 ACGAGTTGTGCGAGCGAG 60.429 61.111 0.00 0.00 0.00 5.03
790 863 2.428569 GACGAGTTGTGCGAGCGA 60.429 61.111 0.00 0.00 0.00 4.93
796 869 3.414700 CGGCCAGACGAGTTGTGC 61.415 66.667 2.24 0.00 35.47 4.57
798 871 4.681978 GGCGGCCAGACGAGTTGT 62.682 66.667 15.62 0.00 35.47 3.32
799 872 4.680237 TGGCGGCCAGACGAGTTG 62.680 66.667 19.77 0.00 35.47 3.16
869 1220 1.216678 AGAGACAGACATCGGGGATCT 59.783 52.381 0.00 0.00 0.00 2.75
870 1221 1.698506 AGAGACAGACATCGGGGATC 58.301 55.000 0.00 0.00 0.00 3.36
871 1222 2.175931 AGTAGAGACAGACATCGGGGAT 59.824 50.000 0.00 0.00 0.00 3.85
872 1223 1.564818 AGTAGAGACAGACATCGGGGA 59.435 52.381 0.00 0.00 0.00 4.81
880 1237 2.159626 GCACTGACGAGTAGAGACAGAC 60.160 54.545 0.00 0.00 33.53 3.51
884 1241 0.097325 CGGCACTGACGAGTAGAGAC 59.903 60.000 0.00 0.00 35.20 3.36
1093 1487 2.607025 GGGGATTTGGGGGTAGGC 59.393 66.667 0.00 0.00 0.00 3.93
1094 1488 1.694882 TCGGGGATTTGGGGGTAGG 60.695 63.158 0.00 0.00 0.00 3.18
1350 1744 1.338674 CGGTTGATGTAGCCCAGAACA 60.339 52.381 0.00 0.00 0.00 3.18
1353 1747 1.220749 GCGGTTGATGTAGCCCAGA 59.779 57.895 0.00 0.00 0.00 3.86
1853 2250 2.030893 TGCAGAACAAAATCGCTCAAGG 60.031 45.455 0.00 0.00 0.00 3.61
1881 2278 2.901292 GCTGAACTGCGCTGCTTGT 61.901 57.895 14.80 0.00 0.00 3.16
2015 2412 5.874261 GCTACTTCAGAATCAGCTTTCTCTT 59.126 40.000 0.00 0.00 33.69 2.85
2022 2419 6.279882 GTGAATAGCTACTTCAGAATCAGCT 58.720 40.000 18.12 18.12 44.43 4.24
2040 2437 3.973206 TGCTTCTTTCCTCGGTGAATA 57.027 42.857 0.00 0.00 0.00 1.75
2067 2464 1.354337 CTGCATCCAAGTCGTCACCG 61.354 60.000 0.00 0.00 0.00 4.94
2077 2474 3.986996 TCTCACTTCATCTGCATCCAA 57.013 42.857 0.00 0.00 0.00 3.53
2121 2518 2.632544 AAGGTGATCCGCGTCGACA 61.633 57.895 17.16 0.00 39.05 4.35
2346 2743 2.128853 AAACCGACTGCGCACAATGG 62.129 55.000 5.66 8.96 35.83 3.16
2406 2803 1.032794 CAGATGCATGCTGCCTGATT 58.967 50.000 20.33 0.00 44.23 2.57
2427 2824 1.897423 CTGGTCACCATCGCCAGTA 59.103 57.895 0.00 0.00 43.42 2.74
2433 2830 1.497278 CAAACGCTGGTCACCATCG 59.503 57.895 18.50 18.50 46.72 3.84
2542 2939 2.616510 GGTAGGCTTTCAGCACATCAGT 60.617 50.000 0.00 0.00 44.75 3.41
2548 2945 1.537202 CAGTTGGTAGGCTTTCAGCAC 59.463 52.381 0.00 0.00 44.75 4.40
2550 2947 1.897560 ACAGTTGGTAGGCTTTCAGC 58.102 50.000 0.00 0.00 41.46 4.26
2673 3070 4.703897 GCCACTGAAAGCCATAGTATACA 58.296 43.478 5.50 0.00 37.60 2.29
2847 3244 3.243501 CGATGCCATGGTATTTGAAAGGG 60.244 47.826 17.13 0.00 0.00 3.95
2890 3287 3.051803 TCAATGTGGAGATCCTCTACCCT 60.052 47.826 7.78 0.00 40.50 4.34
3066 3463 2.743664 TGAGACGAAGAATGGTGCATTG 59.256 45.455 0.00 0.00 33.90 2.82
3096 3493 2.373169 AGAGAACTGGAACAATGCCTCA 59.627 45.455 0.00 0.00 38.70 3.86
3183 3580 2.304761 TGCCTCCCGACTGAAAATAGTT 59.695 45.455 0.00 0.00 0.00 2.24
3213 3610 5.512749 CCTCTCCATTCCCTCACAAGATATG 60.513 48.000 0.00 0.00 0.00 1.78
3456 3853 5.112686 GTCACCATTTACAGAAGCTAGGAG 58.887 45.833 0.00 0.00 0.00 3.69
3573 3972 3.305539 CCATGTCACTGGTGAACAAATGG 60.306 47.826 4.92 11.56 41.85 3.16
3668 4069 3.749088 CCTGTGAAAACTAACCGTGCATA 59.251 43.478 0.00 0.00 0.00 3.14
3728 4130 8.307483 GCAAGAAGAACCTATATGCTACATCTA 58.693 37.037 0.00 0.00 0.00 1.98
3793 4195 9.052759 AGACGTTACTTGAAACATTACTGAATT 57.947 29.630 0.00 0.00 0.00 2.17
3812 4214 3.520290 CCATTACTGGCTGAGACGTTA 57.480 47.619 0.00 0.00 35.23 3.18
3890 4293 3.943381 TGCAGAGAGGCATTCTTTACATG 59.057 43.478 0.00 0.00 39.25 3.21
3908 4311 1.139816 CGCATGAGCTTGCAATGCAG 61.140 55.000 23.21 15.86 42.91 4.41
3927 4330 5.491982 CAAACAGTAGAGGGATATATGGGC 58.508 45.833 0.00 0.00 0.00 5.36
3929 4332 6.498651 AGACCAAACAGTAGAGGGATATATGG 59.501 42.308 0.00 0.00 0.00 2.74
3968 4371 7.328982 TGTGCAGCATGTAAAACAAGATTAATG 59.671 33.333 0.00 0.00 39.31 1.90
3995 4398 4.322725 CCAACTACTGGTGACTGATAGCAA 60.323 45.833 0.00 0.00 40.78 3.91
4011 4414 3.414269 TCCGGGAAATGAAACCAACTAC 58.586 45.455 0.00 0.00 0.00 2.73
4027 4430 2.638480 ACATTGTATCACCATCCGGG 57.362 50.000 0.00 0.00 44.81 5.73
4104 4508 9.366216 GGACTGGGATTTTGTATTTCATTTTAC 57.634 33.333 0.00 0.00 0.00 2.01
4130 4535 2.352651 CCAATGGCTATGTCACTCAACG 59.647 50.000 0.00 0.00 0.00 4.10
4178 4583 4.037690 CACTAAAGCACTTTTCACAGCAC 58.962 43.478 0.20 0.00 34.23 4.40
4181 4586 5.036737 CCAACACTAAAGCACTTTTCACAG 58.963 41.667 0.20 0.00 34.23 3.66
4190 4596 5.001232 TCATAGGAACCAACACTAAAGCAC 58.999 41.667 0.00 0.00 0.00 4.40
4195 4601 9.173021 CAAATGTATCATAGGAACCAACACTAA 57.827 33.333 0.00 0.00 0.00 2.24
4227 4633 8.728088 GTTTCATAAAACACGTCATTTGATCT 57.272 30.769 5.56 0.00 43.52 2.75
4271 4678 7.676104 GCCATTCGAAAACAAAACATCAACTTT 60.676 33.333 0.00 0.00 0.00 2.66
4338 4745 7.826252 TGGCCTATATGAGCTTTCAATAAGATC 59.174 37.037 3.32 0.00 33.60 2.75
4348 4755 3.582998 TTGCTGGCCTATATGAGCTTT 57.417 42.857 3.32 0.00 32.41 3.51
4387 4794 3.821033 ACTGGAAAATGAGTTGTGGCTAC 59.179 43.478 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.