Multiple sequence alignment - TraesCS3A01G360200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G360200 chr3A 100.000 3497 0 0 1 3497 608110942 608107446 0.000000e+00 6458.0
1 TraesCS3A01G360200 chr5A 94.305 2669 141 10 836 3497 234458038 234455374 0.000000e+00 4076.0
2 TraesCS3A01G360200 chr5A 84.297 3547 468 61 3 3495 524232561 524229050 0.000000e+00 3382.0
3 TraesCS3A01G360200 chr5A 91.589 535 42 2 1 532 234458720 234458186 0.000000e+00 736.0
4 TraesCS3A01G360200 chr5A 92.517 147 11 0 644 790 234458186 234458040 9.830000e-51 211.0
5 TraesCS3A01G360200 chr2A 76.547 2554 509 76 982 3495 57921992 57919489 0.000000e+00 1315.0
6 TraesCS3A01G360200 chr5D 80.486 1399 237 30 986 2358 520969931 520971319 0.000000e+00 1038.0
7 TraesCS3A01G360200 chr3D 80.300 1401 234 34 986 2358 520168835 520170221 0.000000e+00 1020.0
8 TraesCS3A01G360200 chr3D 80.072 1385 239 27 986 2358 584734624 584735983 0.000000e+00 994.0
9 TraesCS3A01G360200 chr3D 79.643 1400 235 35 986 2358 40534417 40535793 0.000000e+00 961.0
10 TraesCS3A01G360200 chr3D 76.213 1051 217 29 2464 3495 520170291 520171327 3.090000e-145 525.0
11 TraesCS3A01G360200 chr3D 75.190 1052 227 28 2464 3495 584736051 584737088 1.900000e-127 466.0
12 TraesCS3A01G360200 chr3D 79.688 320 58 6 2457 2773 40535856 40536171 1.260000e-54 224.0
13 TraesCS3A01G360200 chr1D 80.143 1400 235 34 986 2358 33552608 33553991 0.000000e+00 1005.0
14 TraesCS3A01G360200 chr1D 86.393 779 102 3 992 1768 404222759 404221983 0.000000e+00 848.0
15 TraesCS3A01G360200 chr1D 74.859 1062 225 35 2457 3495 33554054 33555096 8.910000e-121 444.0
16 TraesCS3A01G360200 chr7D 76.282 156 33 2 1511 1664 457131877 457131724 2.890000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G360200 chr3A 608107446 608110942 3496 True 6458.000000 6458 100.000000 1 3497 1 chr3A.!!$R1 3496
1 TraesCS3A01G360200 chr5A 524229050 524232561 3511 True 3382.000000 3382 84.297000 3 3495 1 chr5A.!!$R1 3492
2 TraesCS3A01G360200 chr5A 234455374 234458720 3346 True 1674.333333 4076 92.803667 1 3497 3 chr5A.!!$R2 3496
3 TraesCS3A01G360200 chr2A 57919489 57921992 2503 True 1315.000000 1315 76.547000 982 3495 1 chr2A.!!$R1 2513
4 TraesCS3A01G360200 chr5D 520969931 520971319 1388 False 1038.000000 1038 80.486000 986 2358 1 chr5D.!!$F1 1372
5 TraesCS3A01G360200 chr3D 520168835 520171327 2492 False 772.500000 1020 78.256500 986 3495 2 chr3D.!!$F2 2509
6 TraesCS3A01G360200 chr3D 584734624 584737088 2464 False 730.000000 994 77.631000 986 3495 2 chr3D.!!$F3 2509
7 TraesCS3A01G360200 chr3D 40534417 40536171 1754 False 592.500000 961 79.665500 986 2773 2 chr3D.!!$F1 1787
8 TraesCS3A01G360200 chr1D 404221983 404222759 776 True 848.000000 848 86.393000 992 1768 1 chr1D.!!$R1 776
9 TraesCS3A01G360200 chr1D 33552608 33555096 2488 False 724.500000 1005 77.501000 986 3495 2 chr1D.!!$F1 2509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 199 0.892063 TTATTTTTGCCCCGACCAGC 59.108 50.000 0.0 0.0 0.00 4.85 F
686 699 1.065551 GGTGCCTCACAACTGTTTGTC 59.934 52.381 0.0 0.0 44.57 3.18 F
2380 2480 1.075542 CGCTGCTACGGTTGATTCAA 58.924 50.000 0.0 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1099 1112 0.891373 CGAGAAGTTGGAGCAGGAGA 59.109 55.000 0.0 0.0 0.0 3.71 R
2470 2594 1.741706 CATCCCTAACTTGCAGCACAG 59.258 52.381 0.0 0.0 0.0 3.66 R
3186 3323 1.405526 GCATAGTTCTTCTGGCGGTGA 60.406 52.381 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 3.378427 GCAGTGGTTGGTAATGAGAATCC 59.622 47.826 0.00 0.00 0.00 3.01
107 108 5.940470 AGTGGTTGGTAATGAGATTTGACTC 59.060 40.000 0.00 0.00 37.42 3.36
118 120 4.257731 GAGATTTGACTCTGGTTCTTCCC 58.742 47.826 0.00 0.00 34.47 3.97
128 130 1.897802 TGGTTCTTCCCTAAGACCGTC 59.102 52.381 0.00 0.00 41.48 4.79
194 198 3.885724 ATTTATTTTTGCCCCGACCAG 57.114 42.857 0.00 0.00 0.00 4.00
195 199 0.892063 TTATTTTTGCCCCGACCAGC 59.108 50.000 0.00 0.00 0.00 4.85
277 282 2.526304 TCTCTGTGGGAACAAGTTCG 57.474 50.000 6.84 0.00 46.06 3.95
367 373 2.158295 ACCTACCCCGCTGATCTAGATT 60.158 50.000 6.70 0.00 0.00 2.40
437 443 1.330655 ATACCAGCCCTGTGTCTCGG 61.331 60.000 0.00 0.00 0.00 4.63
467 473 2.739379 GTTTCAGCTACACTCTCAAGCC 59.261 50.000 0.00 0.00 36.92 4.35
478 484 3.883744 CTCAAGCCAAGTCGCCGGT 62.884 63.158 1.90 0.00 0.00 5.28
492 498 2.359354 CGGTGATTTGGCCCACGA 60.359 61.111 0.00 0.00 34.30 4.35
505 511 1.079875 CCCACGACGTAACCATTCCG 61.080 60.000 0.00 0.00 0.00 4.30
540 553 5.435041 TCCACAGGTATTATTCAATCCCCTT 59.565 40.000 0.00 0.00 0.00 3.95
541 554 5.770162 CCACAGGTATTATTCAATCCCCTTC 59.230 44.000 0.00 0.00 0.00 3.46
543 556 5.676811 ACAGGTATTATTCAATCCCCTTCCT 59.323 40.000 0.00 0.00 0.00 3.36
546 559 4.749048 ATTATTCAATCCCCTTCCTCCC 57.251 45.455 0.00 0.00 0.00 4.30
567 580 3.610669 CTCGCCTCCCCTCATCGG 61.611 72.222 0.00 0.00 0.00 4.18
572 585 4.899239 CTCCCCTCATCGGCGCAC 62.899 72.222 10.83 0.00 0.00 5.34
587 600 2.782222 GCACGCCTATGACCCGAGA 61.782 63.158 0.00 0.00 0.00 4.04
592 605 1.341531 CGCCTATGACCCGAGAAATCT 59.658 52.381 0.00 0.00 0.00 2.40
595 608 3.321111 GCCTATGACCCGAGAAATCTACA 59.679 47.826 0.00 0.00 0.00 2.74
598 611 3.868757 TGACCCGAGAAATCTACACAG 57.131 47.619 0.00 0.00 0.00 3.66
601 614 4.398358 TGACCCGAGAAATCTACACAGTAG 59.602 45.833 0.00 0.00 0.00 2.57
602 615 3.700038 ACCCGAGAAATCTACACAGTAGG 59.300 47.826 4.52 0.00 0.00 3.18
626 639 6.017934 GGTATTCAAATTTGCGCTAGATCAGA 60.018 38.462 13.54 0.00 0.00 3.27
664 677 3.123804 CCCCAGTCGATCTGTAATTTCG 58.876 50.000 12.10 0.00 42.19 3.46
672 685 2.851263 TCTGTAATTTCGTGGTGCCT 57.149 45.000 0.00 0.00 0.00 4.75
686 699 1.065551 GGTGCCTCACAACTGTTTGTC 59.934 52.381 0.00 0.00 44.57 3.18
688 701 3.202906 GTGCCTCACAACTGTTTGTCTA 58.797 45.455 0.00 0.00 44.57 2.59
739 752 2.456577 ACCACCAGTCATAATTTGGGC 58.543 47.619 0.00 0.00 36.28 5.36
748 761 6.460123 CCAGTCATAATTTGGGCTGTAATCAC 60.460 42.308 9.06 0.00 31.34 3.06
783 796 6.467047 CGCATGAATTAATCAAGTTCAGTCAC 59.533 38.462 0.00 0.00 42.54 3.67
795 808 5.552870 AGTTCAGTCACACTCCTGTTTAT 57.447 39.130 0.00 0.00 0.00 1.40
801 814 4.104102 AGTCACACTCCTGTTTATCCCAAA 59.896 41.667 0.00 0.00 0.00 3.28
806 819 6.659242 CACACTCCTGTTTATCCCAAAAGTAT 59.341 38.462 0.00 0.00 0.00 2.12
811 824 8.153221 TCCTGTTTATCCCAAAAGTATCTACA 57.847 34.615 0.00 0.00 0.00 2.74
814 827 8.220755 TGTTTATCCCAAAAGTATCTACATGC 57.779 34.615 0.00 0.00 0.00 4.06
815 828 7.284489 TGTTTATCCCAAAAGTATCTACATGCC 59.716 37.037 0.00 0.00 0.00 4.40
816 829 5.653255 ATCCCAAAAGTATCTACATGCCT 57.347 39.130 0.00 0.00 0.00 4.75
821 834 5.431765 CAAAAGTATCTACATGCCTCACCT 58.568 41.667 0.00 0.00 0.00 4.00
959 972 9.295214 CTATCATATTCTAGCCTACATTCGTTG 57.705 37.037 0.00 0.00 0.00 4.10
971 984 3.466836 ACATTCGTTGAAGCTCACTCAA 58.533 40.909 0.00 0.00 0.00 3.02
986 999 7.495055 AGCTCACTCAAAATCAAAGTTTTCAT 58.505 30.769 0.00 0.00 0.00 2.57
1049 1062 2.285969 AGCCTCTGGGGATGCAGT 60.286 61.111 0.00 0.00 35.92 4.40
1099 1112 4.338879 ACAAGCTAATGAAGAACAGGCAT 58.661 39.130 0.00 0.00 0.00 4.40
1171 1184 4.391830 TCCAGACATTTGACGAATACAAGC 59.608 41.667 0.00 0.00 0.00 4.01
1200 1216 5.047377 GCTCATTACTGAAATTGGGTTTGGA 60.047 40.000 0.00 0.00 0.00 3.53
1305 1321 2.476619 AGCGATTGTTCTGTCAGAAACG 59.523 45.455 16.86 18.28 35.75 3.60
1715 1739 4.937620 GCGGCTTAAGAATGATATGATGGA 59.062 41.667 6.67 0.00 0.00 3.41
1789 1841 2.223923 CCTCTCATCGACATGGTTCCTC 60.224 54.545 0.00 0.00 0.00 3.71
1860 1933 8.608185 ATCCCATATTAACAACCTTTTCATGT 57.392 30.769 0.00 0.00 0.00 3.21
1948 2021 5.412594 GCATTAGTGACTTTGATCAGACCAA 59.587 40.000 0.00 0.00 0.00 3.67
2052 2135 7.447374 TCTTACTATGGTTTGGTGAACATTG 57.553 36.000 0.00 0.00 40.13 2.82
2064 2147 9.862585 GTTTGGTGAACATTGTTTATTGATTTC 57.137 29.630 3.08 0.00 38.18 2.17
2065 2148 7.865875 TGGTGAACATTGTTTATTGATTTCG 57.134 32.000 3.08 0.00 0.00 3.46
2120 2205 3.243771 CCATGGTAGATTCGTCAGGGTAC 60.244 52.174 2.57 0.00 0.00 3.34
2253 2338 6.183361 ACAGGAATGATTCAGCTCATGTATCT 60.183 38.462 13.92 0.00 36.82 1.98
2297 2382 5.546621 ATGGATGTACATACACCACTACC 57.453 43.478 23.13 9.90 38.89 3.18
2380 2480 1.075542 CGCTGCTACGGTTGATTCAA 58.924 50.000 0.00 0.00 0.00 2.69
2470 2594 4.732285 TCTGCTGATGTCGTTTTCTTTC 57.268 40.909 0.00 0.00 0.00 2.62
2480 2604 2.421775 TCGTTTTCTTTCTGTGCTGCAA 59.578 40.909 2.77 0.00 0.00 4.08
2630 2754 3.397482 CAAGAGGTGCATCTGCTATACC 58.603 50.000 2.86 3.10 42.66 2.73
2697 2821 5.661056 TCCAGTTGATACACTAAGGACTG 57.339 43.478 0.00 0.00 34.38 3.51
2870 3005 6.240894 TCACTCTATTTTCAGATGGCAACTT 58.759 36.000 0.00 0.00 37.61 2.66
2910 3045 4.459089 GACCAGTCAGGCCGGCTC 62.459 72.222 28.56 16.85 43.14 4.70
3118 3254 0.921896 ATTCCAGACAGACCCATGGG 59.078 55.000 30.23 30.23 42.03 4.00
3147 3284 3.627952 TCCCGCTACCACCGCAAA 61.628 61.111 0.00 0.00 0.00 3.68
3186 3323 4.612264 TTAGAAGGGTTCTTTGCTACGT 57.388 40.909 0.00 0.00 41.14 3.57
3210 3347 1.020437 GCCAGAAGAACTATGCAGGC 58.980 55.000 0.00 0.00 0.00 4.85
3367 3504 0.667993 TTCAGCGTTGAAAAGCCAGG 59.332 50.000 12.63 0.00 40.26 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.674796 AGGACGCACTAACTGATTCC 57.325 50.000 0.00 0.00 0.00 3.01
19 20 3.403968 TGCAATACAAAGGACGCACTAA 58.596 40.909 0.00 0.00 0.00 2.24
60 61 2.601763 GGATACAAAGTACACGCTTCCG 59.398 50.000 0.00 0.00 41.14 4.30
107 108 1.900486 ACGGTCTTAGGGAAGAACCAG 59.100 52.381 0.00 0.00 45.29 4.00
118 120 6.632035 GTCACATATCTTAACGACGGTCTTAG 59.368 42.308 6.57 0.00 0.00 2.18
128 130 6.947258 TCATTGCATGTCACATATCTTAACG 58.053 36.000 0.00 0.00 0.00 3.18
194 198 1.537562 GCTGCTGCCCAATTGATAAGC 60.538 52.381 7.12 12.39 0.00 3.09
195 199 1.752498 TGCTGCTGCCCAATTGATAAG 59.248 47.619 13.47 2.05 38.71 1.73
341 347 1.635817 ATCAGCGGGGTAGGTGCAAT 61.636 55.000 0.00 0.00 39.28 3.56
367 373 3.265995 GGGTGGAGATAAGGTCAGGAAAA 59.734 47.826 0.00 0.00 0.00 2.29
437 443 1.302993 TAGCTGAAACGGGGGCAAC 60.303 57.895 0.00 0.00 0.00 4.17
467 473 1.501741 CCAAATCACCGGCGACTTG 59.498 57.895 9.30 6.68 0.00 3.16
478 484 0.035036 TTACGTCGTGGGCCAAATCA 59.965 50.000 8.40 0.00 0.00 2.57
492 498 2.125431 CCGCCGGAATGGTTACGT 60.125 61.111 5.05 0.00 41.21 3.57
505 511 3.866582 CTGTGGATCTCCCCCGCC 61.867 72.222 0.00 0.00 33.41 6.13
520 526 6.206180 AGGAAGGGGATTGAATAATACCTG 57.794 41.667 1.60 0.00 45.30 4.00
549 562 3.610669 CGATGAGGGGAGGCGAGG 61.611 72.222 0.00 0.00 0.00 4.63
550 563 3.610669 CCGATGAGGGGAGGCGAG 61.611 72.222 0.00 0.00 35.97 5.03
569 582 2.279517 CTCGGGTCATAGGCGTGC 60.280 66.667 0.00 0.00 0.00 5.34
572 585 1.341531 AGATTTCTCGGGTCATAGGCG 59.658 52.381 0.00 0.00 0.00 5.52
575 588 5.067936 ACTGTGTAGATTTCTCGGGTCATAG 59.932 44.000 0.00 0.00 0.00 2.23
592 605 6.402766 GCGCAAATTTGAATACCTACTGTGTA 60.403 38.462 22.31 0.00 0.00 2.90
595 608 4.700213 AGCGCAAATTTGAATACCTACTGT 59.300 37.500 22.31 0.00 0.00 3.55
598 611 6.598753 TCTAGCGCAAATTTGAATACCTAC 57.401 37.500 22.31 0.44 0.00 3.18
601 614 6.017934 TCTGATCTAGCGCAAATTTGAATACC 60.018 38.462 22.31 2.62 0.00 2.73
602 615 6.948353 TCTGATCTAGCGCAAATTTGAATAC 58.052 36.000 22.31 7.15 0.00 1.89
626 639 1.408822 GGGGCGACAGATCCATCTTTT 60.409 52.381 0.00 0.00 34.22 2.27
664 677 1.102978 AAACAGTTGTGAGGCACCAC 58.897 50.000 3.51 3.51 37.55 4.16
672 685 7.387673 CAGGATACAATAGACAAACAGTTGTGA 59.612 37.037 0.00 0.00 44.29 3.58
686 699 4.825422 ACATGCGGATCAGGATACAATAG 58.175 43.478 0.00 0.00 41.41 1.73
688 701 3.777106 ACATGCGGATCAGGATACAAT 57.223 42.857 0.00 0.00 41.41 2.71
739 752 1.920574 CGGTGAAGAGCGTGATTACAG 59.079 52.381 0.00 0.00 38.30 2.74
748 761 3.874873 TTCATGCGGTGAAGAGCG 58.125 55.556 0.65 0.00 41.79 5.03
783 796 7.112779 AGATACTTTTGGGATAAACAGGAGTG 58.887 38.462 0.00 0.00 0.00 3.51
795 808 4.473196 TGAGGCATGTAGATACTTTTGGGA 59.527 41.667 0.00 0.00 0.00 4.37
801 814 3.389329 CCAGGTGAGGCATGTAGATACTT 59.611 47.826 0.00 0.00 0.00 2.24
814 827 2.431954 AATCAGATTGCCAGGTGAGG 57.568 50.000 0.00 0.00 0.00 3.86
815 828 4.970711 AGATAATCAGATTGCCAGGTGAG 58.029 43.478 5.85 0.00 0.00 3.51
816 829 5.604231 ACTAGATAATCAGATTGCCAGGTGA 59.396 40.000 5.85 0.00 0.00 4.02
926 939 8.340002 TGTAGGCTAGAATATGATAGATGGAGT 58.660 37.037 0.00 0.00 0.00 3.85
959 972 7.489113 TGAAAACTTTGATTTTGAGTGAGCTTC 59.511 33.333 0.00 0.00 31.90 3.86
986 999 5.739070 GCGTCAGACATGATTCCTACCAATA 60.739 44.000 0.00 0.00 37.87 1.90
1049 1062 4.082625 GCTGTCCATGAATGTTGTCATCAA 60.083 41.667 0.00 0.00 36.04 2.57
1077 1090 3.754965 TGCCTGTTCTTCATTAGCTTGT 58.245 40.909 0.00 0.00 0.00 3.16
1099 1112 0.891373 CGAGAAGTTGGAGCAGGAGA 59.109 55.000 0.00 0.00 0.00 3.71
1134 1147 4.737855 TGTCTGGATTACTTCTACTGCC 57.262 45.455 0.00 0.00 0.00 4.85
1171 1184 3.181497 CCAATTTCAGTAATGAGCCACCG 60.181 47.826 0.00 0.00 0.00 4.94
1200 1216 3.891049 CAAGGGTAGCTTTAGCATTCCT 58.109 45.455 4.33 4.52 45.16 3.36
1280 1296 1.916651 CTGACAGAACAATCGCTCGAG 59.083 52.381 8.45 8.45 0.00 4.04
1571 1595 7.831690 TGCCATAATCATGTTTTGTTCTAGGTA 59.168 33.333 0.00 0.00 0.00 3.08
1715 1739 6.271488 CCAGATTGGTGTTCATATTGTTGT 57.729 37.500 0.00 0.00 31.35 3.32
1816 1869 4.741676 GGGATCGATGTGAATGAAAAATGC 59.258 41.667 0.54 0.00 0.00 3.56
1860 1933 7.117812 GTCGACATTGTCAAGGAAGAAAATCTA 59.882 37.037 16.61 0.00 32.09 1.98
1948 2021 6.567050 GCCATTGTTATCATGTTCTTGATGT 58.433 36.000 10.19 0.00 36.97 3.06
1997 2070 2.906354 ACCATGCATTTCGAGTAGGAC 58.094 47.619 0.00 0.00 0.00 3.85
2052 2135 5.499139 TGATGAGGGCGAAATCAATAAAC 57.501 39.130 0.00 0.00 0.00 2.01
2064 2147 5.947228 ACACATTTATTATGATGAGGGCG 57.053 39.130 0.00 0.00 0.00 6.13
2065 2148 7.715657 TGAAACACATTTATTATGATGAGGGC 58.284 34.615 0.00 0.00 0.00 5.19
2120 2205 3.367327 GCAACGAGCATAGCATAGATCAG 59.633 47.826 0.00 0.00 44.79 2.90
2253 2338 2.112928 TTGCCGGCTGCTGAAGAA 59.887 55.556 29.70 7.86 42.00 2.52
2297 2382 3.287867 AGTCCATTGGTCCAAGCATAG 57.712 47.619 10.72 0.00 0.00 2.23
2470 2594 1.741706 CATCCCTAACTTGCAGCACAG 59.258 52.381 0.00 0.00 0.00 3.66
2480 2604 9.047947 AGTATAAAACTCAACTCATCCCTAACT 57.952 33.333 0.00 0.00 30.33 2.24
2626 2750 3.635836 GTCAGTAAACCCTCTAGCGGTAT 59.364 47.826 0.00 0.00 31.69 2.73
2630 2754 2.492484 ACAGTCAGTAAACCCTCTAGCG 59.508 50.000 0.00 0.00 0.00 4.26
2690 2814 0.976641 TCTGTCCAATCGCAGTCCTT 59.023 50.000 0.00 0.00 34.57 3.36
2697 2821 3.065371 CCTGGTATTTTCTGTCCAATCGC 59.935 47.826 0.00 0.00 0.00 4.58
2910 3045 1.068588 TGTCGTGACCTCTTGTTCTGG 59.931 52.381 0.00 0.00 0.00 3.86
3045 3181 1.005215 CCCTCTGCCTTCTGTCCAAAT 59.995 52.381 0.00 0.00 0.00 2.32
3147 3284 5.950758 TCTAATTGTTGGCAAACATACGT 57.049 34.783 7.67 0.00 45.54 3.57
3186 3323 1.405526 GCATAGTTCTTCTGGCGGTGA 60.406 52.381 0.00 0.00 0.00 4.02
3210 3347 8.712363 CCATAATAGTCTGGTTTGACATAATCG 58.288 37.037 0.00 0.00 39.27 3.34
3367 3504 5.220491 GGTCGATTAGCTCATCTTCAACAAC 60.220 44.000 6.34 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.