Multiple sequence alignment - TraesCS3A01G359000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G359000 chr3A 100.000 6680 0 0 1 6680 607062019 607055340 0.000000e+00 12336
1 TraesCS3A01G359000 chr3A 93.252 163 10 1 3447 3609 726769129 726768968 8.660000e-59 239
2 TraesCS3A01G359000 chr3D 94.014 2623 85 18 3758 6321 464043188 464040579 0.000000e+00 3908
3 TraesCS3A01G359000 chr3D 90.291 2678 162 48 794 3425 464045897 464043272 0.000000e+00 3415
4 TraesCS3A01G359000 chr3D 85.811 592 28 28 235 785 464046862 464046286 1.620000e-160 577
5 TraesCS3A01G359000 chr3D 94.118 340 19 1 6341 6680 464040600 464040262 3.570000e-142 516
6 TraesCS3A01G359000 chr3D 92.398 171 9 2 1 171 464047036 464046870 2.410000e-59 241
7 TraesCS3A01G359000 chr3D 93.210 162 11 0 3448 3609 149764784 149764623 8.660000e-59 239
8 TraesCS3A01G359000 chr3B 94.094 1507 50 15 4605 6079 617410099 617408600 0.000000e+00 2254
9 TraesCS3A01G359000 chr3B 85.987 1727 98 59 433 2068 617414314 617412641 0.000000e+00 1716
10 TraesCS3A01G359000 chr3B 96.495 856 29 1 3758 4612 617410980 617410125 0.000000e+00 1413
11 TraesCS3A01G359000 chr3B 95.080 813 36 4 2614 3425 617411872 617411063 0.000000e+00 1277
12 TraesCS3A01G359000 chr3B 94.027 519 28 3 2100 2617 617412645 617412129 0.000000e+00 784
13 TraesCS3A01G359000 chr3B 93.671 474 24 4 6170 6638 617408476 617408004 0.000000e+00 704
14 TraesCS3A01G359000 chr3B 99.213 127 1 0 3633 3759 796325893 796326019 5.210000e-56 230
15 TraesCS3A01G359000 chr3B 99.213 127 1 0 3633 3759 796326401 796326527 5.210000e-56 230
16 TraesCS3A01G359000 chr4D 92.857 168 12 0 3443 3610 21147727 21147894 1.860000e-60 244
17 TraesCS3A01G359000 chr4D 98.425 127 2 0 3633 3759 19873636 19873510 2.420000e-54 224
18 TraesCS3A01G359000 chr5A 93.333 165 9 2 3448 3612 636415134 636415296 6.690000e-60 243
19 TraesCS3A01G359000 chr4B 91.573 178 11 4 3432 3609 103804652 103804479 6.690000e-60 243
20 TraesCS3A01G359000 chr4B 93.210 162 11 0 3448 3609 28724304 28724143 8.660000e-59 239
21 TraesCS3A01G359000 chr4B 92.727 165 10 2 3447 3611 142520900 142521062 3.110000e-58 237
22 TraesCS3A01G359000 chr7A 92.771 166 12 0 3444 3609 209149119 209149284 2.410000e-59 241
23 TraesCS3A01G359000 chr7B 92.308 169 12 1 3448 3616 697560803 697560970 8.660000e-59 239
24 TraesCS3A01G359000 chr5D 99.213 127 1 0 3633 3759 503297027 503296901 5.210000e-56 230
25 TraesCS3A01G359000 chr5D 99.213 127 1 0 3633 3759 512414395 512414269 5.210000e-56 230
26 TraesCS3A01G359000 chr5B 99.213 127 1 0 3633 3759 660250625 660250751 5.210000e-56 230
27 TraesCS3A01G359000 chr1D 99.213 127 1 0 3633 3759 254440161 254440035 5.210000e-56 230
28 TraesCS3A01G359000 chr1D 99.213 127 1 0 3633 3759 491423269 491423395 5.210000e-56 230
29 TraesCS3A01G359000 chr1D 82.743 226 34 5 3981 4204 381307915 381308137 5.280000e-46 196
30 TraesCS3A01G359000 chr1D 83.511 188 27 4 4616 4801 381310485 381310670 8.910000e-39 172
31 TraesCS3A01G359000 chr1D 94.737 76 4 0 2755 2830 381306401 381306476 1.180000e-22 119
32 TraesCS3A01G359000 chr2D 98.425 127 2 0 3633 3759 638429557 638429431 2.420000e-54 224
33 TraesCS3A01G359000 chr1A 83.710 221 34 2 3985 4204 481925221 481925440 2.440000e-49 207
34 TraesCS3A01G359000 chr1A 83.511 188 27 4 4616 4801 481929082 481929267 8.910000e-39 172
35 TraesCS3A01G359000 chr1A 91.954 87 6 1 2752 2837 481923826 481923912 3.270000e-23 121
36 TraesCS3A01G359000 chr1B 82.439 205 36 0 4317 4521 511447630 511447834 5.320000e-41 180
37 TraesCS3A01G359000 chr1B 81.221 213 33 7 4607 4815 511447907 511448116 1.490000e-36 165
38 TraesCS3A01G359000 chr1B 92.857 84 6 0 2755 2838 511443955 511444038 9.100000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G359000 chr3A 607055340 607062019 6679 True 12336.0 12336 100.000000 1 6680 1 chr3A.!!$R1 6679
1 TraesCS3A01G359000 chr3D 464040262 464047036 6774 True 1731.4 3908 91.326400 1 6680 5 chr3D.!!$R2 6679
2 TraesCS3A01G359000 chr3B 617408004 617414314 6310 True 1358.0 2254 93.225667 433 6638 6 chr3B.!!$R1 6205
3 TraesCS3A01G359000 chr3B 796325893 796326527 634 False 230.0 230 99.213000 3633 3759 2 chr3B.!!$F1 126

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 475 0.172578 CAACGTATCTCTCCCGCACA 59.827 55.000 0.00 0.0 0.00 4.57 F
811 1252 0.868406 CCCTCTTTGAACAGTCGCAC 59.132 55.000 0.00 0.0 0.00 5.34 F
1430 1938 0.172352 CCTGCTCGTCTCTGGAAGTC 59.828 60.000 0.00 0.0 33.76 3.01 F
2149 2681 0.179089 CTGATGGCCTCTCAACTCCG 60.179 60.000 3.32 0.0 0.00 4.63 F
2345 2886 0.824109 AGCTAGCAACTGTATGGCGA 59.176 50.000 18.83 0.0 0.00 5.54 F
3031 3834 2.227703 TGGAGGGATCCTAGGTCTCTT 58.772 52.381 12.58 0.0 31.76 2.85 F
4152 5045 2.122768 AGGGCTTGGTCTCCTATTCAG 58.877 52.381 0.00 0.0 0.00 3.02 F
4710 5646 0.551131 ATGAGGCCAGGGAAAGAGGT 60.551 55.000 5.01 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1430 1938 1.526887 ACACTTCGATCGCAAACACAG 59.473 47.619 11.09 0.05 0.00 3.66 R
2026 2557 2.171448 ACCAGATGCTCCTAACCATGTC 59.829 50.000 0.00 0.00 0.00 3.06 R
3342 4145 1.138247 GCATGGCACTACAGCAAGC 59.862 57.895 0.00 0.00 35.83 4.01 R
3631 4472 0.679002 CCCGTCAGTCCCGAACTAGA 60.679 60.000 0.00 0.00 36.07 2.43 R
4133 5026 1.840635 ACTGAATAGGAGACCAAGCCC 59.159 52.381 0.00 0.00 0.00 5.19 R
4366 5259 0.684479 TAGCCAGGCATCTCAGTCGT 60.684 55.000 15.80 0.00 0.00 4.34 R
5610 6575 0.895100 TGCAGTCAGGGCATGGAAAC 60.895 55.000 0.00 0.00 36.11 2.78 R
6488 7543 0.239347 CCGCCAGCTTCTTTTCACAG 59.761 55.000 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.877508 GGAGGGGATTTGACGTTATTCAG 59.122 47.826 0.00 0.00 0.00 3.02
43 44 2.357952 GGGGATTTGACGTTATTCAGCC 59.642 50.000 0.00 0.00 0.00 4.85
65 66 0.517316 CACACCCTTTTCGCAGCTAC 59.483 55.000 0.00 0.00 0.00 3.58
73 74 1.014044 TTTCGCAGCTACGAGCCTTG 61.014 55.000 9.35 0.00 43.77 3.61
94 95 2.159382 GAACCAAGGGAAAGCGATCAA 58.841 47.619 0.00 0.00 0.00 2.57
106 107 1.007964 CGATCAATCCGAGAGCGCT 60.008 57.895 11.27 11.27 38.10 5.92
138 139 3.137728 GGAAGGATCCGGAATAAAGGGAA 59.862 47.826 9.01 0.00 35.59 3.97
147 148 3.875134 CGGAATAAAGGGAAGCGTGTTAT 59.125 43.478 0.00 0.00 0.00 1.89
148 149 4.334481 CGGAATAAAGGGAAGCGTGTTATT 59.666 41.667 0.00 0.00 0.00 1.40
149 150 5.524646 CGGAATAAAGGGAAGCGTGTTATTA 59.475 40.000 0.00 0.00 0.00 0.98
175 176 3.805267 GCCACTGGCTGATCGAAG 58.195 61.111 13.28 0.00 46.69 3.79
176 177 1.817099 GCCACTGGCTGATCGAAGG 60.817 63.158 13.28 0.00 46.69 3.46
177 178 1.900351 CCACTGGCTGATCGAAGGA 59.100 57.895 0.00 0.00 0.00 3.36
178 179 0.467384 CCACTGGCTGATCGAAGGAT 59.533 55.000 0.00 0.00 34.96 3.24
187 188 2.086054 GATCGAAGGATCCGATTGGG 57.914 55.000 5.98 0.00 45.49 4.12
188 189 1.344763 GATCGAAGGATCCGATTGGGT 59.655 52.381 5.98 0.00 45.49 4.51
189 190 0.750850 TCGAAGGATCCGATTGGGTC 59.249 55.000 5.98 3.25 45.42 4.46
190 191 0.753262 CGAAGGATCCGATTGGGTCT 59.247 55.000 12.26 0.00 45.46 3.85
191 192 1.961394 CGAAGGATCCGATTGGGTCTA 59.039 52.381 12.26 0.00 45.46 2.59
192 193 2.029828 CGAAGGATCCGATTGGGTCTAG 60.030 54.545 12.26 0.00 45.46 2.43
193 194 2.777459 AGGATCCGATTGGGTCTAGT 57.223 50.000 12.26 0.00 45.46 2.57
194 195 3.897657 AGGATCCGATTGGGTCTAGTA 57.102 47.619 12.26 0.00 45.46 1.82
195 196 3.498334 AGGATCCGATTGGGTCTAGTAC 58.502 50.000 12.26 0.00 45.46 2.73
196 197 3.140519 AGGATCCGATTGGGTCTAGTACT 59.859 47.826 12.26 0.00 45.46 2.73
197 198 4.353191 AGGATCCGATTGGGTCTAGTACTA 59.647 45.833 12.26 1.89 45.46 1.82
198 199 4.701171 GGATCCGATTGGGTCTAGTACTAG 59.299 50.000 21.87 21.87 45.46 2.57
199 200 4.785346 TCCGATTGGGTCTAGTACTAGT 57.215 45.455 25.58 8.73 37.00 2.57
200 201 5.894298 TCCGATTGGGTCTAGTACTAGTA 57.106 43.478 25.58 12.46 37.00 1.82
201 202 5.615289 TCCGATTGGGTCTAGTACTAGTAC 58.385 45.833 25.58 23.03 37.00 2.73
202 203 5.367937 TCCGATTGGGTCTAGTACTAGTACT 59.632 44.000 32.39 32.39 42.08 2.73
203 204 5.469421 CCGATTGGGTCTAGTACTAGTACTG 59.531 48.000 35.52 26.39 45.25 2.74
204 205 6.054295 CGATTGGGTCTAGTACTAGTACTGT 58.946 44.000 35.52 19.53 45.25 3.55
205 206 7.212976 CGATTGGGTCTAGTACTAGTACTGTA 58.787 42.308 35.52 23.89 45.25 2.74
206 207 7.384660 CGATTGGGTCTAGTACTAGTACTGTAG 59.615 44.444 35.52 27.60 45.25 2.74
207 208 7.502060 TTGGGTCTAGTACTAGTACTGTAGT 57.498 40.000 35.52 18.27 45.25 2.73
208 209 8.609617 TTGGGTCTAGTACTAGTACTGTAGTA 57.390 38.462 35.52 20.02 45.25 1.82
247 248 4.350368 TTCAGCATATTTCCGGATAGCA 57.650 40.909 4.15 0.00 0.00 3.49
284 285 2.870372 GTGTTGGGCATGACGAGC 59.130 61.111 0.00 0.00 0.00 5.03
289 290 2.583593 GGGCATGACGAGCGACTC 60.584 66.667 0.00 0.00 0.00 3.36
303 304 3.060020 GACTCGTCCCGATCGCCAA 62.060 63.158 10.32 0.00 34.61 4.52
323 324 6.435428 GCCAATTTTGTCCGACGAATAATAT 58.565 36.000 1.90 0.00 0.00 1.28
324 325 6.577427 GCCAATTTTGTCCGACGAATAATATC 59.423 38.462 1.90 0.00 0.00 1.63
342 349 5.871396 ATATCGTCACAAGTCCAATACCT 57.129 39.130 0.00 0.00 0.00 3.08
344 351 4.445452 TCGTCACAAGTCCAATACCTAC 57.555 45.455 0.00 0.00 0.00 3.18
345 352 3.119743 TCGTCACAAGTCCAATACCTACG 60.120 47.826 0.00 0.00 0.00 3.51
347 354 2.829720 TCACAAGTCCAATACCTACGCT 59.170 45.455 0.00 0.00 0.00 5.07
349 356 2.829720 ACAAGTCCAATACCTACGCTCA 59.170 45.455 0.00 0.00 0.00 4.26
350 357 3.451178 ACAAGTCCAATACCTACGCTCAT 59.549 43.478 0.00 0.00 0.00 2.90
415 434 4.789075 CCACCACGGTCGTAGGCG 62.789 72.222 10.32 0.00 39.92 5.52
427 446 1.446272 GTAGGCGAGCAAGCGAAGT 60.446 57.895 0.00 0.00 38.18 3.01
428 447 1.446099 TAGGCGAGCAAGCGAAGTG 60.446 57.895 0.00 0.00 38.18 3.16
429 448 4.451652 GGCGAGCAAGCGAAGTGC 62.452 66.667 0.00 0.00 46.98 4.40
451 470 1.609555 AGATCGCAACGTATCTCTCCC 59.390 52.381 0.00 0.00 0.00 4.30
452 471 0.311165 ATCGCAACGTATCTCTCCCG 59.689 55.000 0.00 0.00 0.00 5.14
453 472 1.944676 CGCAACGTATCTCTCCCGC 60.945 63.158 0.00 0.00 0.00 6.13
454 473 1.141019 GCAACGTATCTCTCCCGCA 59.859 57.895 0.00 0.00 0.00 5.69
455 474 1.146358 GCAACGTATCTCTCCCGCAC 61.146 60.000 0.00 0.00 0.00 5.34
456 475 0.172578 CAACGTATCTCTCCCGCACA 59.827 55.000 0.00 0.00 0.00 4.57
459 478 1.442148 GTATCTCTCCCGCACACCC 59.558 63.158 0.00 0.00 0.00 4.61
460 479 2.125326 TATCTCTCCCGCACACCCG 61.125 63.158 0.00 0.00 0.00 5.28
514 533 4.363990 ACGCAGAGCAGTCCACCG 62.364 66.667 0.00 0.00 0.00 4.94
519 538 4.436998 GAGCAGTCCACCGGTCCG 62.437 72.222 2.59 3.60 0.00 4.79
549 572 1.552792 CCTCAGAGACCTTCCACTTCC 59.447 57.143 0.00 0.00 0.00 3.46
567 590 2.934887 TCCACGTCATTCTATCCCGTA 58.065 47.619 0.00 0.00 0.00 4.02
569 592 2.621998 CCACGTCATTCTATCCCGTACT 59.378 50.000 0.00 0.00 0.00 2.73
571 594 2.034305 ACGTCATTCTATCCCGTACTGC 59.966 50.000 0.00 0.00 0.00 4.40
572 595 2.293677 CGTCATTCTATCCCGTACTGCT 59.706 50.000 0.00 0.00 0.00 4.24
573 596 3.643763 GTCATTCTATCCCGTACTGCTG 58.356 50.000 0.00 0.00 0.00 4.41
574 597 2.035961 TCATTCTATCCCGTACTGCTGC 59.964 50.000 0.00 0.00 0.00 5.25
735 795 1.670059 GGGGAGAAGGAAGGAAGGAA 58.330 55.000 0.00 0.00 0.00 3.36
736 796 1.562008 GGGGAGAAGGAAGGAAGGAAG 59.438 57.143 0.00 0.00 0.00 3.46
737 797 1.562008 GGGAGAAGGAAGGAAGGAAGG 59.438 57.143 0.00 0.00 0.00 3.46
738 798 2.552367 GGAGAAGGAAGGAAGGAAGGA 58.448 52.381 0.00 0.00 0.00 3.36
811 1252 0.868406 CCCTCTTTGAACAGTCGCAC 59.132 55.000 0.00 0.00 0.00 5.34
947 1389 4.527583 GCCGGCAGAGCTCTCCTG 62.528 72.222 24.80 10.44 34.88 3.86
948 1390 3.847602 CCGGCAGAGCTCTCCTGG 61.848 72.222 18.34 18.34 32.51 4.45
951 1393 4.173924 GCAGAGCTCTCCTGGCCC 62.174 72.222 14.96 0.00 32.51 5.80
952 1394 3.478274 CAGAGCTCTCCTGGCCCC 61.478 72.222 14.96 0.00 0.00 5.80
1224 1690 2.261671 GCCGTCTTCCTCTTCGCA 59.738 61.111 0.00 0.00 0.00 5.10
1325 1791 3.766691 GCCCGGTTCGCTCTACCA 61.767 66.667 0.00 0.00 35.31 3.25
1430 1938 0.172352 CCTGCTCGTCTCTGGAAGTC 59.828 60.000 0.00 0.00 33.76 3.01
1433 1941 0.885196 GCTCGTCTCTGGAAGTCTGT 59.115 55.000 0.00 0.00 33.76 3.41
1444 1952 1.126846 GGAAGTCTGTGTTTGCGATCG 59.873 52.381 11.69 11.69 0.00 3.69
1461 1969 4.316515 GCGATCGAAGTGTTTACTCGATTC 60.317 45.833 21.57 0.87 42.08 2.52
1465 1973 2.667473 AGTGTTTACTCGATTCGGGG 57.333 50.000 11.23 4.80 28.79 5.73
1467 1975 1.066645 GTGTTTACTCGATTCGGGGGT 60.067 52.381 11.23 7.95 0.00 4.95
1468 1976 1.066716 TGTTTACTCGATTCGGGGGTG 60.067 52.381 11.23 0.00 0.00 4.61
1480 1988 2.579738 GGGGTGGAGCGAGTTCTC 59.420 66.667 0.00 0.00 0.00 2.87
1497 2005 2.572290 TCTCTCGATGCTCGGATTGTA 58.428 47.619 5.87 0.00 40.88 2.41
1500 2008 2.033424 TCTCGATGCTCGGATTGTAGTG 59.967 50.000 5.87 0.00 40.88 2.74
1510 2018 3.969250 ATTGTAGTGGGTGCGGCGG 62.969 63.158 9.78 0.00 0.00 6.13
1579 2087 6.150318 TCAGAGACTGAACTATGTCGTTTTC 58.850 40.000 0.00 0.00 37.57 2.29
1680 2205 6.908870 TGCTGCAGAATTACTACAATACAG 57.091 37.500 20.43 0.00 0.00 2.74
1756 2287 8.137437 CACCAAGTTGAAACATACTTCAGATTT 58.863 33.333 3.87 0.00 36.69 2.17
1758 2289 8.137437 CCAAGTTGAAACATACTTCAGATTTGT 58.863 33.333 3.87 0.00 36.69 2.83
1763 2294 6.549364 TGAAACATACTTCAGATTTGTTGGGT 59.451 34.615 0.00 0.00 31.67 4.51
1764 2295 6.976934 AACATACTTCAGATTTGTTGGGTT 57.023 33.333 0.00 0.00 0.00 4.11
1777 2308 9.816787 AGATTTGTTGGGTTCCTAGTATTTTTA 57.183 29.630 0.00 0.00 0.00 1.52
1794 2325 9.232473 AGTATTTTTAATCAACTGGGAGAAGAC 57.768 33.333 0.00 0.00 0.00 3.01
1795 2326 9.010029 GTATTTTTAATCAACTGGGAGAAGACA 57.990 33.333 0.00 0.00 0.00 3.41
1796 2327 6.877611 TTTTAATCAACTGGGAGAAGACAC 57.122 37.500 0.00 0.00 0.00 3.67
1797 2328 5.560722 TTAATCAACTGGGAGAAGACACA 57.439 39.130 0.00 0.00 0.00 3.72
1846 2377 5.795441 GCGGTTTGAGAATTTGTCAGATTAC 59.205 40.000 0.00 0.00 0.00 1.89
1870 2401 2.416296 GCTTCAAGCAATAGCATGTGCA 60.416 45.455 3.89 0.00 45.49 4.57
1901 2432 8.769891 TGTTGTAAATATTGCGGTATCACATAG 58.230 33.333 0.00 0.00 0.00 2.23
1902 2433 8.770828 GTTGTAAATATTGCGGTATCACATAGT 58.229 33.333 0.00 0.00 0.00 2.12
1903 2434 9.984190 TTGTAAATATTGCGGTATCACATAGTA 57.016 29.630 0.00 0.00 0.00 1.82
1932 2463 9.413048 TGTTAATTGAACGGAATTATGGAAAAC 57.587 29.630 0.00 0.00 41.35 2.43
1994 2525 7.223777 TGCTGGTCTAAAACAATTGCTTTTAAC 59.776 33.333 11.79 15.15 0.00 2.01
2074 2606 6.288294 ACATGGCTTTTCATATTAGTAGCGA 58.712 36.000 0.00 0.00 0.00 4.93
2080 2612 7.331934 GGCTTTTCATATTAGTAGCGATGATGA 59.668 37.037 0.00 0.00 0.00 2.92
2081 2613 8.165428 GCTTTTCATATTAGTAGCGATGATGAC 58.835 37.037 0.00 0.00 0.00 3.06
2082 2614 9.196552 CTTTTCATATTAGTAGCGATGATGACA 57.803 33.333 0.00 0.00 0.00 3.58
2083 2615 8.748380 TTTCATATTAGTAGCGATGATGACAG 57.252 34.615 0.00 0.00 0.00 3.51
2084 2616 7.687941 TCATATTAGTAGCGATGATGACAGA 57.312 36.000 0.00 0.00 0.00 3.41
2085 2617 8.286191 TCATATTAGTAGCGATGATGACAGAT 57.714 34.615 0.00 0.00 0.00 2.90
2086 2618 8.743714 TCATATTAGTAGCGATGATGACAGATT 58.256 33.333 0.00 0.00 0.00 2.40
2087 2619 8.805688 CATATTAGTAGCGATGATGACAGATTG 58.194 37.037 0.00 0.00 0.00 2.67
2149 2681 0.179089 CTGATGGCCTCTCAACTCCG 60.179 60.000 3.32 0.00 0.00 4.63
2290 2824 7.095229 TGTGTCTCTTATTTAGTTCACATGCAC 60.095 37.037 0.00 0.00 31.15 4.57
2345 2886 0.824109 AGCTAGCAACTGTATGGCGA 59.176 50.000 18.83 0.00 0.00 5.54
2457 2999 9.669353 GCATTTCTAATTTCATGTACTGGTATG 57.331 33.333 0.00 0.00 0.00 2.39
2530 3072 5.450592 TTCTGCACATTTACAATTGAGCA 57.549 34.783 13.59 8.96 37.16 4.26
2576 3118 6.211184 ACATTTTCTATGTTTGATTGCCCTGA 59.789 34.615 0.00 0.00 0.00 3.86
2668 3471 6.634436 GTGTATGCATTGCTCTATTTTGCTAC 59.366 38.462 3.54 0.00 34.47 3.58
2834 3637 2.740904 GCAAAGGACATCGGTAGGTACC 60.741 54.545 2.73 2.73 42.98 3.34
3031 3834 2.227703 TGGAGGGATCCTAGGTCTCTT 58.772 52.381 12.58 0.00 31.76 2.85
3048 3851 7.769220 AGGTCTCTTTCTTTTTGATATGCATG 58.231 34.615 10.16 0.00 0.00 4.06
3074 3877 9.903682 GATGTTGATTGTAATCCTTAATGATGG 57.096 33.333 2.41 0.00 34.50 3.51
3127 3930 9.847706 CACTATCTGTATATAGTCTTTTCGCAT 57.152 33.333 0.00 0.00 40.02 4.73
3323 4126 5.659463 AGAGCTCAGTTTGTTAGCTATGAG 58.341 41.667 17.77 13.22 46.29 2.90
3426 4230 8.561738 ACACACTTAGTCATTTATGTTTAGGG 57.438 34.615 0.00 0.00 0.00 3.53
3427 4231 8.380099 ACACACTTAGTCATTTATGTTTAGGGA 58.620 33.333 0.00 0.00 0.00 4.20
3462 4303 9.884814 ATATACTATTGTACTCCCTCTGTTTCT 57.115 33.333 0.00 0.00 0.00 2.52
3464 4305 9.710818 ATACTATTGTACTCCCTCTGTTTCTAA 57.289 33.333 0.00 0.00 0.00 2.10
3465 4306 8.431910 ACTATTGTACTCCCTCTGTTTCTAAA 57.568 34.615 0.00 0.00 0.00 1.85
3466 4307 9.047947 ACTATTGTACTCCCTCTGTTTCTAAAT 57.952 33.333 0.00 0.00 0.00 1.40
3472 4313 9.478768 GTACTCCCTCTGTTTCTAAATATAAGC 57.521 37.037 0.00 0.00 0.00 3.09
3473 4314 7.510407 ACTCCCTCTGTTTCTAAATATAAGCC 58.490 38.462 0.00 0.00 0.00 4.35
3474 4315 7.348537 ACTCCCTCTGTTTCTAAATATAAGCCT 59.651 37.037 0.00 0.00 0.00 4.58
3475 4316 8.102484 TCCCTCTGTTTCTAAATATAAGCCTT 57.898 34.615 0.00 0.00 0.00 4.35
3476 4317 8.557450 TCCCTCTGTTTCTAAATATAAGCCTTT 58.443 33.333 0.00 0.00 0.00 3.11
3477 4318 9.190317 CCCTCTGTTTCTAAATATAAGCCTTTT 57.810 33.333 0.00 0.00 0.00 2.27
3492 4333 8.966069 ATAAGCCTTTTTAGAGATTCCAGTAC 57.034 34.615 0.00 0.00 0.00 2.73
3493 4334 6.374417 AGCCTTTTTAGAGATTCCAGTACA 57.626 37.500 0.00 0.00 0.00 2.90
3494 4335 6.410540 AGCCTTTTTAGAGATTCCAGTACAG 58.589 40.000 0.00 0.00 0.00 2.74
3495 4336 6.213600 AGCCTTTTTAGAGATTCCAGTACAGA 59.786 38.462 0.00 0.00 0.00 3.41
3496 4337 6.314152 GCCTTTTTAGAGATTCCAGTACAGAC 59.686 42.308 0.00 0.00 0.00 3.51
3497 4338 7.616313 CCTTTTTAGAGATTCCAGTACAGACT 58.384 38.462 0.00 0.00 35.80 3.24
3498 4339 8.750298 CCTTTTTAGAGATTCCAGTACAGACTA 58.250 37.037 0.00 0.00 33.32 2.59
3499 4340 9.575783 CTTTTTAGAGATTCCAGTACAGACTAC 57.424 37.037 0.00 0.00 33.32 2.73
3500 4341 8.645814 TTTTAGAGATTCCAGTACAGACTACA 57.354 34.615 0.00 0.00 33.32 2.74
3501 4342 8.824756 TTTAGAGATTCCAGTACAGACTACAT 57.175 34.615 0.00 0.00 33.32 2.29
3502 4343 9.916360 TTTAGAGATTCCAGTACAGACTACATA 57.084 33.333 0.00 0.00 33.32 2.29
3504 4345 8.402798 AGAGATTCCAGTACAGACTACATATG 57.597 38.462 0.00 0.00 33.32 1.78
3505 4346 7.450014 AGAGATTCCAGTACAGACTACATATGG 59.550 40.741 7.80 0.00 33.32 2.74
3506 4347 7.298374 AGATTCCAGTACAGACTACATATGGA 58.702 38.462 7.80 0.00 33.32 3.41
3507 4348 7.952930 AGATTCCAGTACAGACTACATATGGAT 59.047 37.037 7.80 0.00 33.32 3.41
3508 4349 6.901081 TCCAGTACAGACTACATATGGATG 57.099 41.667 7.80 0.00 34.61 3.51
3510 4351 7.523415 TCCAGTACAGACTACATATGGATGTA 58.477 38.462 7.80 1.72 45.77 2.29
3511 4352 8.170730 TCCAGTACAGACTACATATGGATGTAT 58.829 37.037 7.80 0.00 45.42 2.29
3512 4353 9.462606 CCAGTACAGACTACATATGGATGTATA 57.537 37.037 7.80 0.00 45.42 1.47
3530 4371 9.435802 GGATGTATATAGACGTATTTTAGAGCG 57.564 37.037 0.00 0.00 0.00 5.03
3531 4372 9.985318 GATGTATATAGACGTATTTTAGAGCGT 57.015 33.333 0.00 0.00 40.44 5.07
3538 4379 7.024340 AGACGTATTTTAGAGCGTAGATTCA 57.976 36.000 0.00 0.00 37.71 2.57
3539 4380 6.911511 AGACGTATTTTAGAGCGTAGATTCAC 59.088 38.462 0.00 0.00 37.71 3.18
3540 4381 6.793349 ACGTATTTTAGAGCGTAGATTCACT 58.207 36.000 0.00 0.00 35.71 3.41
3541 4382 6.911511 ACGTATTTTAGAGCGTAGATTCACTC 59.088 38.462 0.00 0.00 35.71 3.51
3542 4383 6.910972 CGTATTTTAGAGCGTAGATTCACTCA 59.089 38.462 0.00 0.00 0.00 3.41
3543 4384 7.591795 CGTATTTTAGAGCGTAGATTCACTCAT 59.408 37.037 0.00 0.00 0.00 2.90
3544 4385 9.250624 GTATTTTAGAGCGTAGATTCACTCATT 57.749 33.333 0.00 0.00 0.00 2.57
3545 4386 8.723942 ATTTTAGAGCGTAGATTCACTCATTT 57.276 30.769 0.00 0.00 0.00 2.32
3546 4387 8.547967 TTTTAGAGCGTAGATTCACTCATTTT 57.452 30.769 0.00 0.00 0.00 1.82
3547 4388 7.525688 TTAGAGCGTAGATTCACTCATTTTG 57.474 36.000 0.00 0.00 0.00 2.44
3548 4389 4.331168 AGAGCGTAGATTCACTCATTTTGC 59.669 41.667 0.00 0.00 0.00 3.68
3549 4390 4.256920 AGCGTAGATTCACTCATTTTGCT 58.743 39.130 0.00 0.00 0.00 3.91
3550 4391 4.331168 AGCGTAGATTCACTCATTTTGCTC 59.669 41.667 0.00 0.00 0.00 4.26
3551 4392 4.331168 GCGTAGATTCACTCATTTTGCTCT 59.669 41.667 0.00 0.00 0.00 4.09
3552 4393 5.726138 GCGTAGATTCACTCATTTTGCTCTG 60.726 44.000 0.00 0.00 0.00 3.35
3553 4394 5.349817 CGTAGATTCACTCATTTTGCTCTGT 59.650 40.000 0.00 0.00 0.00 3.41
3554 4395 6.531594 CGTAGATTCACTCATTTTGCTCTGTA 59.468 38.462 0.00 0.00 0.00 2.74
3555 4396 7.223582 CGTAGATTCACTCATTTTGCTCTGTAT 59.776 37.037 0.00 0.00 0.00 2.29
3556 4397 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
3557 4398 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
3558 4399 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
3559 4400 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
3560 4401 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
3561 4402 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
3562 4403 6.036517 CACTCATTTTGCTCTGTATGTAGTCC 59.963 42.308 0.00 0.00 0.00 3.85
3563 4404 6.048732 TCATTTTGCTCTGTATGTAGTCCA 57.951 37.500 0.00 0.00 0.00 4.02
3564 4405 6.653020 TCATTTTGCTCTGTATGTAGTCCAT 58.347 36.000 0.00 0.00 37.58 3.41
3565 4406 7.791029 TCATTTTGCTCTGTATGTAGTCCATA 58.209 34.615 0.00 0.00 34.86 2.74
3566 4407 8.432013 TCATTTTGCTCTGTATGTAGTCCATAT 58.568 33.333 0.00 0.00 38.29 1.78
3567 4408 9.060347 CATTTTGCTCTGTATGTAGTCCATATT 57.940 33.333 0.00 0.00 38.29 1.28
3568 4409 8.437360 TTTTGCTCTGTATGTAGTCCATATTG 57.563 34.615 0.00 0.00 38.29 1.90
3569 4410 6.101650 TGCTCTGTATGTAGTCCATATTGG 57.898 41.667 0.00 0.00 38.29 3.16
3570 4411 5.838521 TGCTCTGTATGTAGTCCATATTGGA 59.161 40.000 0.00 0.00 45.98 3.53
3584 4425 6.306987 TCCATATTGGAATCTCTAAAAGGGC 58.693 40.000 0.00 0.00 45.00 5.19
3585 4426 6.103205 TCCATATTGGAATCTCTAAAAGGGCT 59.897 38.462 0.00 0.00 45.00 5.19
3586 4427 6.779539 CCATATTGGAATCTCTAAAAGGGCTT 59.220 38.462 0.00 0.00 40.96 4.35
3587 4428 7.944554 CCATATTGGAATCTCTAAAAGGGCTTA 59.055 37.037 0.00 0.00 40.96 3.09
3588 4429 9.525826 CATATTGGAATCTCTAAAAGGGCTTAT 57.474 33.333 0.00 0.00 0.00 1.73
3592 4433 9.936329 TTGGAATCTCTAAAAGGGCTTATATTT 57.064 29.630 0.00 0.00 0.00 1.40
3600 4441 9.807921 TCTAAAAGGGCTTATATTTAGGAATGG 57.192 33.333 0.00 0.00 36.48 3.16
3601 4442 9.807921 CTAAAAGGGCTTATATTTAGGAATGGA 57.192 33.333 0.00 0.00 33.69 3.41
3602 4443 8.712228 AAAAGGGCTTATATTTAGGAATGGAG 57.288 34.615 0.00 0.00 0.00 3.86
3603 4444 6.394345 AGGGCTTATATTTAGGAATGGAGG 57.606 41.667 0.00 0.00 0.00 4.30
3604 4445 5.254032 AGGGCTTATATTTAGGAATGGAGGG 59.746 44.000 0.00 0.00 0.00 4.30
3605 4446 5.253096 GGGCTTATATTTAGGAATGGAGGGA 59.747 44.000 0.00 0.00 0.00 4.20
3626 4467 3.793559 AGTACACGATAGCATGTTTCCC 58.206 45.455 0.00 0.00 42.67 3.97
3627 4468 2.779755 ACACGATAGCATGTTTCCCA 57.220 45.000 0.00 0.00 42.67 4.37
3631 4472 4.462483 ACACGATAGCATGTTTCCCATTTT 59.538 37.500 0.00 0.00 42.67 1.82
3714 4555 3.245122 ACCAATTGAACTACAATCCCCGT 60.245 43.478 7.12 0.00 46.90 5.28
3846 4687 6.150976 TCTGGCGATTCTGAAAAATAATGTGT 59.849 34.615 0.00 0.00 0.00 3.72
3902 4743 3.434310 GGATGAGGGGATTTCTCAGAACC 60.434 52.174 0.00 0.00 43.45 3.62
3906 4747 2.307098 AGGGGATTTCTCAGAACCTGTG 59.693 50.000 0.00 0.00 32.61 3.66
3923 4764 4.065789 CCTGTGGTTCTTAGGTCAACTTC 58.934 47.826 0.00 0.00 0.00 3.01
4018 4911 7.170489 ACAGCAAATTCAGTGATATCTATGACG 59.830 37.037 3.98 0.00 0.00 4.35
4152 5045 2.122768 AGGGCTTGGTCTCCTATTCAG 58.877 52.381 0.00 0.00 0.00 3.02
4182 5075 6.540914 ACAAAGATGTTGTTCTTCCGAAGTTA 59.459 34.615 8.01 0.00 35.91 2.24
4235 5128 4.142381 GGTTATTGCAGCTCCGAAGAAAAT 60.142 41.667 0.00 0.00 0.00 1.82
4366 5259 2.669569 GCTCCGCCTGCTGTTCAA 60.670 61.111 0.00 0.00 0.00 2.69
4624 5560 6.150396 ACCGTCATCCATTGTTTTTGTTTA 57.850 33.333 0.00 0.00 0.00 2.01
4662 5598 3.496130 CGTTCTCTTGCTGTGTCTTTGAT 59.504 43.478 0.00 0.00 0.00 2.57
4710 5646 0.551131 ATGAGGCCAGGGAAAGAGGT 60.551 55.000 5.01 0.00 0.00 3.85
4833 5769 4.836125 AATGTTGGTGTTACTGCTTCAG 57.164 40.909 0.00 0.00 37.52 3.02
4956 5892 2.682352 TCATTTACATGTCCATGCCGTG 59.318 45.455 0.00 2.60 42.39 4.94
5152 6088 5.319043 TCAAGGTTTGTAGGAATTGGAGT 57.681 39.130 0.00 0.00 0.00 3.85
5380 6316 3.243201 GCCTGATAAAAGAAGATTGGCCG 60.243 47.826 0.00 0.00 32.50 6.13
5397 6333 1.000506 GCCGTACTCTTTGACAGTCCA 59.999 52.381 0.00 0.00 0.00 4.02
5436 6372 2.625790 TGTGGTTCATGGCCAGTAAAAC 59.374 45.455 13.05 12.23 36.57 2.43
5447 6383 6.716934 TGGCCAGTAAAACATTACTTTTCA 57.283 33.333 0.00 0.00 35.70 2.69
5450 6386 6.461788 GGCCAGTAAAACATTACTTTTCACCA 60.462 38.462 0.00 0.00 35.70 4.17
5453 6389 8.576442 CCAGTAAAACATTACTTTTCACCATCT 58.424 33.333 0.00 0.00 35.70 2.90
5454 6390 9.965824 CAGTAAAACATTACTTTTCACCATCTT 57.034 29.630 0.00 0.00 35.70 2.40
5460 6420 9.533253 AACATTACTTTTCACCATCTTTTTCAG 57.467 29.630 0.00 0.00 0.00 3.02
5535 6500 4.759693 TGCAGATGGAAGTCATTAAAACGT 59.240 37.500 0.00 0.00 35.97 3.99
5553 6518 3.722147 ACGTCAGCTGCTTAATATGAGG 58.278 45.455 9.47 2.41 33.29 3.86
5580 6545 0.947244 GCGATGCCAAGGGTATTCAG 59.053 55.000 0.00 0.00 0.00 3.02
5581 6546 1.747206 GCGATGCCAAGGGTATTCAGT 60.747 52.381 0.00 0.00 0.00 3.41
5610 6575 6.834959 AGAGCAAATGAATCTGTATACACG 57.165 37.500 0.08 0.00 0.00 4.49
5617 6582 8.397906 CAAATGAATCTGTATACACGTTTCCAT 58.602 33.333 0.08 0.00 0.00 3.41
5647 6612 3.859443 TGCATGTGCCATCCAAATAAAC 58.141 40.909 2.07 0.00 41.18 2.01
5654 6619 4.021544 GTGCCATCCAAATAAACCAGAACA 60.022 41.667 0.00 0.00 0.00 3.18
5761 6733 1.785041 TTCTTTGCGTGCAGTCTGGC 61.785 55.000 1.14 0.00 0.00 4.85
5896 6868 3.181469 GGCTAACAATACACCGATCCTCA 60.181 47.826 0.00 0.00 0.00 3.86
5897 6869 4.503296 GGCTAACAATACACCGATCCTCAT 60.503 45.833 0.00 0.00 0.00 2.90
5898 6870 4.686554 GCTAACAATACACCGATCCTCATC 59.313 45.833 0.00 0.00 0.00 2.92
5953 6927 1.573108 TCTCTAGGCCTTCTTGGTGG 58.427 55.000 12.58 0.00 38.35 4.61
6068 7042 8.239681 TGTTCACTTTATTCTAATGTGTCGAG 57.760 34.615 10.74 0.00 0.00 4.04
6069 7043 8.085909 TGTTCACTTTATTCTAATGTGTCGAGA 58.914 33.333 10.74 0.00 0.00 4.04
6070 7044 9.088512 GTTCACTTTATTCTAATGTGTCGAGAT 57.911 33.333 10.74 0.00 0.00 2.75
6088 7095 8.932791 TGTCGAGATTTTATTCTTTGGAGTAAC 58.067 33.333 0.00 0.00 0.00 2.50
6117 7124 5.427157 TGTGGGGTAGATTTGCATTAGTCTA 59.573 40.000 0.00 0.00 0.00 2.59
6285 7297 4.025896 GTCTGAGCAATCATCAATCGAGTG 60.026 45.833 6.51 6.51 0.00 3.51
6339 7351 7.945326 TTTTTAAATTTCTTTGCGCTTGTTG 57.055 28.000 9.73 0.00 0.00 3.33
6340 7352 6.893958 TTTAAATTTCTTTGCGCTTGTTGA 57.106 29.167 9.73 0.00 0.00 3.18
6341 7353 6.509317 TTAAATTTCTTTGCGCTTGTTGAG 57.491 33.333 9.73 0.00 0.00 3.02
6342 7354 3.715628 ATTTCTTTGCGCTTGTTGAGT 57.284 38.095 9.73 0.00 0.00 3.41
6343 7355 2.473530 TTCTTTGCGCTTGTTGAGTG 57.526 45.000 9.73 0.00 38.94 3.51
6344 7356 1.662517 TCTTTGCGCTTGTTGAGTGA 58.337 45.000 9.73 0.00 38.15 3.41
6345 7357 1.599071 TCTTTGCGCTTGTTGAGTGAG 59.401 47.619 9.73 0.00 38.15 3.51
6346 7358 0.662619 TTTGCGCTTGTTGAGTGAGG 59.337 50.000 9.73 0.00 38.15 3.86
6347 7359 0.463654 TTGCGCTTGTTGAGTGAGGT 60.464 50.000 9.73 0.00 38.15 3.85
6348 7360 1.159713 TGCGCTTGTTGAGTGAGGTG 61.160 55.000 9.73 0.00 38.15 4.00
6349 7361 1.571460 CGCTTGTTGAGTGAGGTGC 59.429 57.895 0.00 0.00 38.15 5.01
6350 7362 0.882042 CGCTTGTTGAGTGAGGTGCT 60.882 55.000 0.00 0.00 38.15 4.40
6351 7363 0.871057 GCTTGTTGAGTGAGGTGCTC 59.129 55.000 0.00 0.00 0.00 4.26
6352 7364 1.542108 GCTTGTTGAGTGAGGTGCTCT 60.542 52.381 0.00 0.00 34.30 4.09
6353 7365 2.843701 CTTGTTGAGTGAGGTGCTCTT 58.156 47.619 0.00 0.00 34.30 2.85
6354 7366 3.803715 GCTTGTTGAGTGAGGTGCTCTTA 60.804 47.826 0.00 0.00 34.30 2.10
6355 7367 4.573900 CTTGTTGAGTGAGGTGCTCTTAT 58.426 43.478 0.00 0.00 34.30 1.73
6356 7368 4.623932 TGTTGAGTGAGGTGCTCTTATT 57.376 40.909 0.00 0.00 34.30 1.40
6357 7369 4.973168 TGTTGAGTGAGGTGCTCTTATTT 58.027 39.130 0.00 0.00 34.30 1.40
6358 7370 5.376625 TGTTGAGTGAGGTGCTCTTATTTT 58.623 37.500 0.00 0.00 34.30 1.82
6359 7371 6.530120 TGTTGAGTGAGGTGCTCTTATTTTA 58.470 36.000 0.00 0.00 34.30 1.52
6403 7457 2.159462 GGCAGTGATGTAAAGCAGCTTC 60.159 50.000 8.48 0.00 34.02 3.86
6505 7560 2.225467 ACTCTGTGAAAAGAAGCTGGC 58.775 47.619 0.00 0.00 0.00 4.85
6570 7625 0.179156 CAGTTAGGCTGCCAATTGCG 60.179 55.000 22.65 0.28 45.60 4.85
6592 7647 3.751518 AGTAAATCAAGGGCTCAACGTT 58.248 40.909 0.00 0.00 0.00 3.99
6620 7675 1.752683 TCTGGAAGACGAGACCTAGC 58.247 55.000 0.00 0.00 38.67 3.42
6621 7676 0.378962 CTGGAAGACGAGACCTAGCG 59.621 60.000 0.00 0.00 34.07 4.26
6645 7700 2.543777 AAAGTTCAGTCGCCTTGCTA 57.456 45.000 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.614829 ATAACGTCAAATCCCCTCCG 57.385 50.000 0.00 0.00 0.00 4.63
41 42 2.644992 CGAAAAGGGTGTGCTGGC 59.355 61.111 0.00 0.00 0.00 4.85
43 44 1.283793 CTGCGAAAAGGGTGTGCTG 59.716 57.895 0.00 0.00 0.00 4.41
73 74 1.095600 GATCGCTTTCCCTTGGTTCC 58.904 55.000 0.00 0.00 0.00 3.62
94 95 4.489810 CATAAGATTTAGCGCTCTCGGAT 58.510 43.478 16.34 1.36 35.95 4.18
106 107 6.757173 TTCCGGATCCTTCCATAAGATTTA 57.243 37.500 4.15 0.00 42.74 1.40
138 139 2.099098 GCAAGGGCAATAATAACACGCT 59.901 45.455 0.00 0.00 40.72 5.07
147 148 2.974623 CCAGTGGCAAGGGCAATAA 58.025 52.632 0.00 0.00 43.71 1.40
148 149 4.762016 CCAGTGGCAAGGGCAATA 57.238 55.556 0.00 0.00 43.71 1.90
167 168 1.344438 CCCAATCGGATCCTTCGATCA 59.656 52.381 10.75 0.00 45.89 2.92
171 172 0.753262 AGACCCAATCGGATCCTTCG 59.247 55.000 10.75 0.00 34.64 3.79
173 174 3.047695 ACTAGACCCAATCGGATCCTT 57.952 47.619 10.75 0.00 34.64 3.36
174 175 2.777459 ACTAGACCCAATCGGATCCT 57.223 50.000 10.75 0.00 34.64 3.24
175 176 3.498334 AGTACTAGACCCAATCGGATCC 58.502 50.000 0.00 0.00 34.64 3.36
176 177 5.315348 ACTAGTACTAGACCCAATCGGATC 58.685 45.833 31.93 0.00 36.97 3.36
177 178 5.321934 ACTAGTACTAGACCCAATCGGAT 57.678 43.478 31.93 6.21 36.97 4.18
178 179 4.785346 ACTAGTACTAGACCCAATCGGA 57.215 45.455 31.93 0.00 36.97 4.55
179 180 5.469421 CAGTACTAGTACTAGACCCAATCGG 59.531 48.000 31.93 13.13 43.98 4.18
180 181 6.054295 ACAGTACTAGTACTAGACCCAATCG 58.946 44.000 31.93 18.08 43.98 3.34
181 182 8.210265 ACTACAGTACTAGTACTAGACCCAATC 58.790 40.741 31.93 14.78 43.98 2.67
182 183 8.100135 ACTACAGTACTAGTACTAGACCCAAT 57.900 38.462 31.93 13.94 43.98 3.16
183 184 7.502060 ACTACAGTACTAGTACTAGACCCAA 57.498 40.000 31.93 13.79 43.98 4.12
184 185 8.012957 GTACTACAGTACTAGTACTAGACCCA 57.987 42.308 31.93 14.39 43.98 4.51
215 216 9.268268 CCGGAAATATGCTGAAAATAAGTAGTA 57.732 33.333 0.00 0.00 0.00 1.82
216 217 7.990886 TCCGGAAATATGCTGAAAATAAGTAGT 59.009 33.333 0.00 0.00 0.00 2.73
217 218 8.378172 TCCGGAAATATGCTGAAAATAAGTAG 57.622 34.615 0.00 0.00 0.00 2.57
218 219 8.918202 ATCCGGAAATATGCTGAAAATAAGTA 57.082 30.769 9.01 0.00 0.00 2.24
219 220 7.823745 ATCCGGAAATATGCTGAAAATAAGT 57.176 32.000 9.01 0.00 0.00 2.24
220 221 7.965107 GCTATCCGGAAATATGCTGAAAATAAG 59.035 37.037 9.01 0.00 0.00 1.73
221 222 7.446931 TGCTATCCGGAAATATGCTGAAAATAA 59.553 33.333 9.01 0.00 0.00 1.40
222 223 6.939730 TGCTATCCGGAAATATGCTGAAAATA 59.060 34.615 9.01 0.00 0.00 1.40
223 224 5.769662 TGCTATCCGGAAATATGCTGAAAAT 59.230 36.000 9.01 0.00 0.00 1.82
224 225 5.129634 TGCTATCCGGAAATATGCTGAAAA 58.870 37.500 9.01 0.00 0.00 2.29
225 226 4.713553 TGCTATCCGGAAATATGCTGAAA 58.286 39.130 9.01 0.00 0.00 2.69
226 227 4.202357 ACTGCTATCCGGAAATATGCTGAA 60.202 41.667 9.01 0.00 0.00 3.02
227 228 3.324846 ACTGCTATCCGGAAATATGCTGA 59.675 43.478 9.01 0.00 0.00 4.26
228 229 3.668447 ACTGCTATCCGGAAATATGCTG 58.332 45.455 9.01 14.25 0.00 4.41
229 230 4.357918 AACTGCTATCCGGAAATATGCT 57.642 40.909 9.01 0.00 0.00 3.79
230 231 5.389516 CGTTAACTGCTATCCGGAAATATGC 60.390 44.000 9.01 9.35 0.00 3.14
231 232 5.694910 ACGTTAACTGCTATCCGGAAATATG 59.305 40.000 9.01 1.49 0.00 1.78
232 233 5.850614 ACGTTAACTGCTATCCGGAAATAT 58.149 37.500 9.01 0.00 0.00 1.28
233 234 5.266733 ACGTTAACTGCTATCCGGAAATA 57.733 39.130 9.01 0.00 0.00 1.40
247 248 2.735857 GTGCCCGCGACGTTAACT 60.736 61.111 8.23 0.00 0.00 2.24
323 324 3.119743 CGTAGGTATTGGACTTGTGACGA 60.120 47.826 0.00 0.00 0.00 4.20
324 325 3.176708 CGTAGGTATTGGACTTGTGACG 58.823 50.000 0.00 0.00 0.00 4.35
325 326 2.928116 GCGTAGGTATTGGACTTGTGAC 59.072 50.000 0.00 0.00 0.00 3.67
326 327 2.829720 AGCGTAGGTATTGGACTTGTGA 59.170 45.455 0.00 0.00 35.08 3.58
342 349 0.682292 TGGTTGGTGACATGAGCGTA 59.318 50.000 0.00 0.00 42.32 4.42
344 351 1.868997 GTGGTTGGTGACATGAGCG 59.131 57.895 0.00 0.00 42.32 5.03
345 352 1.577328 CCGTGGTTGGTGACATGAGC 61.577 60.000 0.00 0.00 42.32 4.26
347 354 1.599518 GCCGTGGTTGGTGACATGA 60.600 57.895 0.00 0.00 42.32 3.07
349 356 1.896660 GTGCCGTGGTTGGTGACAT 60.897 57.895 0.00 0.00 42.32 3.06
350 357 2.515057 GTGCCGTGGTTGGTGACA 60.515 61.111 0.00 0.00 39.83 3.58
398 413 4.789075 CGCCTACGACCGTGGTGG 62.789 72.222 5.20 0.00 43.93 4.61
400 415 3.437795 CTCGCCTACGACCGTGGT 61.438 66.667 5.20 0.00 45.12 4.16
401 416 4.849329 GCTCGCCTACGACCGTGG 62.849 72.222 5.20 1.87 45.12 4.94
403 418 3.338126 CTTGCTCGCCTACGACCGT 62.338 63.158 0.00 0.00 45.12 4.83
415 434 0.801251 ATCTTGCACTTCGCTTGCTC 59.199 50.000 0.00 0.00 43.06 4.26
422 441 0.517132 CGTTGCGATCTTGCACTTCG 60.517 55.000 7.55 7.55 46.25 3.79
423 442 0.512952 ACGTTGCGATCTTGCACTTC 59.487 50.000 0.00 0.00 46.25 3.01
427 446 2.159240 AGAGATACGTTGCGATCTTGCA 60.159 45.455 0.00 0.00 44.61 4.08
428 447 2.464865 AGAGATACGTTGCGATCTTGC 58.535 47.619 0.00 0.00 32.47 4.01
429 448 3.046390 GGAGAGATACGTTGCGATCTTG 58.954 50.000 0.00 0.00 32.47 3.02
497 516 4.363990 CGGTGGACTGCTCTGCGT 62.364 66.667 0.00 0.00 0.00 5.24
502 521 4.436998 CGGACCGGTGGACTGCTC 62.437 72.222 14.63 0.00 0.00 4.26
514 533 1.295746 GAGGTTTGGACTCCGGACC 59.704 63.158 0.00 0.93 33.21 4.46
519 538 1.276705 GGTCTCTGAGGTTTGGACTCC 59.723 57.143 4.59 0.00 34.06 3.85
520 539 2.252714 AGGTCTCTGAGGTTTGGACTC 58.747 52.381 4.59 0.00 35.55 3.36
522 541 2.289756 GGAAGGTCTCTGAGGTTTGGAC 60.290 54.545 4.59 0.00 0.00 4.02
523 542 1.978580 GGAAGGTCTCTGAGGTTTGGA 59.021 52.381 4.59 0.00 0.00 3.53
549 572 3.629058 CAGTACGGGATAGAATGACGTG 58.371 50.000 0.00 0.00 38.34 4.49
643 685 3.771160 CCGTCCGTGGGAAGGGAG 61.771 72.222 8.55 0.00 45.43 4.30
672 720 1.416401 TCAAGAGAGGTTTTGGACGCT 59.584 47.619 0.00 0.00 0.00 5.07
673 721 1.878953 TCAAGAGAGGTTTTGGACGC 58.121 50.000 0.00 0.00 0.00 5.19
674 722 4.083271 GGAATTCAAGAGAGGTTTTGGACG 60.083 45.833 7.93 0.00 0.00 4.79
675 723 4.827284 TGGAATTCAAGAGAGGTTTTGGAC 59.173 41.667 7.93 0.00 0.00 4.02
735 795 3.003763 GCGGTGGACCTCCTTCCT 61.004 66.667 10.81 0.00 36.51 3.36
736 796 4.097361 GGCGGTGGACCTCCTTCC 62.097 72.222 10.81 7.80 37.89 3.46
737 797 4.097361 GGGCGGTGGACCTCCTTC 62.097 72.222 10.81 2.63 40.70 3.46
738 798 4.974438 TGGGCGGTGGACCTCCTT 62.974 66.667 10.81 0.00 44.25 3.36
784 844 0.845102 GTTCAAAGAGGGGGAGGGGA 60.845 60.000 0.00 0.00 0.00 4.81
785 845 1.140134 TGTTCAAAGAGGGGGAGGGG 61.140 60.000 0.00 0.00 0.00 4.79
786 846 0.329596 CTGTTCAAAGAGGGGGAGGG 59.670 60.000 0.00 0.00 0.00 4.30
787 847 1.003696 GACTGTTCAAAGAGGGGGAGG 59.996 57.143 0.00 0.00 0.00 4.30
831 1272 2.368011 GGAGAGGGGGAACGGAAGG 61.368 68.421 0.00 0.00 0.00 3.46
931 1373 3.847602 CCAGGAGAGCTCTGCCGG 61.848 72.222 29.33 25.41 34.60 6.13
933 1375 4.173924 GGCCAGGAGAGCTCTGCC 62.174 72.222 29.33 25.82 34.60 4.85
934 1376 4.173924 GGGCCAGGAGAGCTCTGC 62.174 72.222 26.38 26.38 34.24 4.26
935 1377 3.478274 GGGGCCAGGAGAGCTCTG 61.478 72.222 23.91 7.83 0.00 3.35
991 1454 4.527157 GTGCTGCATCGAAGCCGC 62.527 66.667 20.03 20.03 43.80 6.53
992 1455 3.869272 GGTGCTGCATCGAAGCCG 61.869 66.667 10.54 4.80 40.06 5.52
1224 1690 4.477975 GCGACGTAGAGCAGCGGT 62.478 66.667 0.00 0.00 35.25 5.68
1242 1708 1.226686 CCATGTAGAGCAGCATCGCC 61.227 60.000 0.00 0.00 0.00 5.54
1314 1780 2.978824 GGGCTGTGGTAGAGCGAA 59.021 61.111 0.00 0.00 37.32 4.70
1430 1938 1.526887 ACACTTCGATCGCAAACACAG 59.473 47.619 11.09 0.05 0.00 3.66
1433 1941 3.805422 AGTAAACACTTCGATCGCAAACA 59.195 39.130 11.09 0.00 0.00 2.83
1444 1952 2.928116 CCCCGAATCGAGTAAACACTTC 59.072 50.000 3.36 0.00 0.00 3.01
1461 1969 4.452733 GAACTCGCTCCACCCCCG 62.453 72.222 0.00 0.00 0.00 5.73
1510 2018 1.545582 CACAATGATCCAACCACCCAC 59.454 52.381 0.00 0.00 0.00 4.61
1579 2087 1.571919 GAGTATACGGCCACAAGCAG 58.428 55.000 2.24 0.00 46.50 4.24
1654 2179 7.919690 TGTATTGTAGTAATTCTGCAGCAATC 58.080 34.615 9.47 5.65 39.69 2.67
1680 2205 4.079253 ACCCTCACATACATTTCCACAAC 58.921 43.478 0.00 0.00 0.00 3.32
1735 2260 8.137437 CCAACAAATCTGAAGTATGTTTCAACT 58.863 33.333 0.00 0.00 36.69 3.16
1756 2287 9.589461 TTGATTAAAAATACTAGGAACCCAACA 57.411 29.630 0.00 0.00 0.00 3.33
1758 2289 9.816787 AGTTGATTAAAAATACTAGGAACCCAA 57.183 29.630 0.00 0.00 0.00 4.12
1763 2294 9.681062 CTCCCAGTTGATTAAAAATACTAGGAA 57.319 33.333 0.00 0.00 28.65 3.36
1764 2295 9.053472 TCTCCCAGTTGATTAAAAATACTAGGA 57.947 33.333 0.00 0.00 0.00 2.94
1777 2308 4.647564 ATGTGTCTTCTCCCAGTTGATT 57.352 40.909 0.00 0.00 0.00 2.57
1778 2309 5.664908 AGATATGTGTCTTCTCCCAGTTGAT 59.335 40.000 0.00 0.00 0.00 2.57
1794 2325 9.722184 ATTATCTGATTCTGACCAAGATATGTG 57.278 33.333 0.00 0.00 33.93 3.21
1797 2328 9.228949 GCAATTATCTGATTCTGACCAAGATAT 57.771 33.333 0.00 0.00 33.93 1.63
1870 2401 8.898761 TGATACCGCAATATTTACAACATTTCT 58.101 29.630 0.00 0.00 0.00 2.52
1904 2435 9.982651 TTTCCATAATTCCGTTCAATTAACAAA 57.017 25.926 0.00 0.00 38.03 2.83
1932 2463 3.298619 TGGATGGATAGTTTGCATTGGG 58.701 45.455 0.00 0.00 36.38 4.12
1939 2470 4.095483 GCAGACTGTTGGATGGATAGTTTG 59.905 45.833 3.99 0.00 0.00 2.93
1994 2525 8.720562 TGTACACACATTCATAAGATTCAACTG 58.279 33.333 0.00 0.00 0.00 3.16
2025 2556 2.437281 CCAGATGCTCCTAACCATGTCT 59.563 50.000 0.00 0.00 0.00 3.41
2026 2557 2.171448 ACCAGATGCTCCTAACCATGTC 59.829 50.000 0.00 0.00 0.00 3.06
2074 2606 8.585471 AAATTAACCTGTCAATCTGTCATCAT 57.415 30.769 0.00 0.00 0.00 2.45
2086 2618 9.295825 ACACTTGAATCATAAATTAACCTGTCA 57.704 29.630 0.00 0.00 0.00 3.58
2149 2681 6.706716 AGCTACTACTGAAAAACAAGTCCTTC 59.293 38.462 0.00 0.00 0.00 3.46
2209 2741 9.388346 GTATCTCAAAGACACTATAGAACGATG 57.612 37.037 6.78 0.00 0.00 3.84
2210 2742 8.283992 CGTATCTCAAAGACACTATAGAACGAT 58.716 37.037 6.78 0.00 0.00 3.73
2287 2821 8.691727 CAATATGAGAATACTAGTAACACGTGC 58.308 37.037 17.22 0.00 0.00 5.34
2345 2886 2.944129 ACACCACCTTTGTAAGCATGT 58.056 42.857 0.00 0.00 0.00 3.21
2474 3016 9.358872 GAAAAGTTTCTTTGAACTTGATCAAGT 57.641 29.630 31.06 31.06 46.23 3.16
2498 3040 8.539770 TTGTAAATGTGCAGAAAAACAAAGAA 57.460 26.923 5.99 0.00 0.00 2.52
2530 3072 4.184629 GTGCCTACGACAAATCAGAGAAT 58.815 43.478 0.00 0.00 0.00 2.40
2631 3434 3.078891 TGCATACACTGTGGCCAAATA 57.921 42.857 7.24 0.00 0.00 1.40
2696 3499 6.815142 ACTTCCTTCAATATGAAATGCTTTGC 59.185 34.615 0.00 0.00 35.73 3.68
2744 3547 2.817844 GGGCAAACCTACCAAAGTACAG 59.182 50.000 0.00 0.00 35.85 2.74
2834 3637 3.817084 TCACAAAGAGCAACTGATGGAAG 59.183 43.478 0.00 0.00 0.00 3.46
2880 3683 7.190871 ACACTTTGTACATTGGAAACTTTACG 58.809 34.615 0.00 0.00 0.00 3.18
2890 3693 4.290155 GTGAGCAACACTTTGTACATTGG 58.710 43.478 0.00 0.00 45.13 3.16
3031 3834 9.878667 AATCAACATCATGCATATCAAAAAGAA 57.121 25.926 0.00 0.00 0.00 2.52
3048 3851 9.903682 CCATCATTAAGGATTACAATCAACATC 57.096 33.333 0.00 0.00 37.15 3.06
3074 3877 2.095372 GCGTATGAAAACCCAGTAGCAC 59.905 50.000 0.00 0.00 0.00 4.40
3123 3926 3.181497 CCCTAACCAAAAGACATGATGCG 60.181 47.826 0.00 0.00 0.00 4.73
3127 3930 4.825085 GTCAACCCTAACCAAAAGACATGA 59.175 41.667 0.00 0.00 0.00 3.07
3179 3982 5.004726 GTGCAACTGTCATTGTTCAGAAAAC 59.995 40.000 14.67 0.00 35.84 2.43
3283 4086 4.792068 AGCTCTCTAGTGTGAATCTAGCT 58.208 43.478 0.00 0.00 36.00 3.32
3342 4145 1.138247 GCATGGCACTACAGCAAGC 59.862 57.895 0.00 0.00 35.83 4.01
3404 4207 9.449719 AGTTCCCTAAACATAAATGACTAAGTG 57.550 33.333 0.00 0.00 40.56 3.16
3446 4287 9.478768 GCTTATATTTAGAAACAGAGGGAGTAC 57.521 37.037 0.00 0.00 0.00 2.73
3447 4288 8.648693 GGCTTATATTTAGAAACAGAGGGAGTA 58.351 37.037 0.00 0.00 0.00 2.59
3448 4289 7.348537 AGGCTTATATTTAGAAACAGAGGGAGT 59.651 37.037 0.00 0.00 0.00 3.85
3449 4290 7.740805 AGGCTTATATTTAGAAACAGAGGGAG 58.259 38.462 0.00 0.00 0.00 4.30
3450 4291 7.691993 AGGCTTATATTTAGAAACAGAGGGA 57.308 36.000 0.00 0.00 0.00 4.20
3451 4292 8.753497 AAAGGCTTATATTTAGAAACAGAGGG 57.247 34.615 0.00 0.00 0.00 4.30
3467 4308 8.548877 TGTACTGGAATCTCTAAAAAGGCTTAT 58.451 33.333 0.00 0.00 0.00 1.73
3468 4309 7.913789 TGTACTGGAATCTCTAAAAAGGCTTA 58.086 34.615 0.00 0.00 0.00 3.09
3469 4310 6.779860 TGTACTGGAATCTCTAAAAAGGCTT 58.220 36.000 0.00 0.00 0.00 4.35
3470 4311 6.213600 TCTGTACTGGAATCTCTAAAAAGGCT 59.786 38.462 0.00 0.00 0.00 4.58
3471 4312 6.314152 GTCTGTACTGGAATCTCTAAAAAGGC 59.686 42.308 0.00 0.00 0.00 4.35
3472 4313 7.616313 AGTCTGTACTGGAATCTCTAAAAAGG 58.384 38.462 0.00 0.00 33.57 3.11
3473 4314 9.575783 GTAGTCTGTACTGGAATCTCTAAAAAG 57.424 37.037 0.00 0.00 36.36 2.27
3474 4315 9.085645 TGTAGTCTGTACTGGAATCTCTAAAAA 57.914 33.333 0.00 0.00 36.36 1.94
3475 4316 8.645814 TGTAGTCTGTACTGGAATCTCTAAAA 57.354 34.615 0.00 0.00 36.36 1.52
3476 4317 8.824756 ATGTAGTCTGTACTGGAATCTCTAAA 57.175 34.615 0.00 0.00 36.36 1.85
3478 4319 9.508642 CATATGTAGTCTGTACTGGAATCTCTA 57.491 37.037 0.00 0.00 36.36 2.43
3479 4320 7.450014 CCATATGTAGTCTGTACTGGAATCTCT 59.550 40.741 1.24 0.00 36.36 3.10
3480 4321 7.448777 TCCATATGTAGTCTGTACTGGAATCTC 59.551 40.741 1.24 0.00 36.36 2.75
3481 4322 7.298374 TCCATATGTAGTCTGTACTGGAATCT 58.702 38.462 1.24 0.00 36.36 2.40
3482 4323 7.526142 TCCATATGTAGTCTGTACTGGAATC 57.474 40.000 1.24 0.00 36.36 2.52
3483 4324 7.510685 ACATCCATATGTAGTCTGTACTGGAAT 59.489 37.037 1.24 0.00 44.66 3.01
3484 4325 6.839134 ACATCCATATGTAGTCTGTACTGGAA 59.161 38.462 1.24 0.00 44.66 3.53
3485 4326 6.373759 ACATCCATATGTAGTCTGTACTGGA 58.626 40.000 1.24 0.00 44.66 3.86
3486 4327 6.656632 ACATCCATATGTAGTCTGTACTGG 57.343 41.667 1.24 0.00 44.66 4.00
3504 4345 9.435802 CGCTCTAAAATACGTCTATATACATCC 57.564 37.037 0.00 0.00 0.00 3.51
3505 4346 9.985318 ACGCTCTAAAATACGTCTATATACATC 57.015 33.333 0.00 0.00 32.37 3.06
3512 4353 8.781196 TGAATCTACGCTCTAAAATACGTCTAT 58.219 33.333 0.00 0.00 39.78 1.98
3513 4354 8.066595 GTGAATCTACGCTCTAAAATACGTCTA 58.933 37.037 0.00 0.00 39.78 2.59
3514 4355 6.911511 GTGAATCTACGCTCTAAAATACGTCT 59.088 38.462 0.00 0.00 39.78 4.18
3515 4356 6.911511 AGTGAATCTACGCTCTAAAATACGTC 59.088 38.462 0.00 0.00 39.78 4.34
3516 4357 6.793349 AGTGAATCTACGCTCTAAAATACGT 58.207 36.000 0.00 0.00 42.22 3.57
3517 4358 6.910972 TGAGTGAATCTACGCTCTAAAATACG 59.089 38.462 0.00 0.00 44.58 3.06
3518 4359 8.804688 ATGAGTGAATCTACGCTCTAAAATAC 57.195 34.615 0.00 0.00 44.58 1.89
3519 4360 9.817809 AAATGAGTGAATCTACGCTCTAAAATA 57.182 29.630 0.00 0.00 44.58 1.40
3520 4361 8.723942 AAATGAGTGAATCTACGCTCTAAAAT 57.276 30.769 0.00 0.00 44.58 1.82
3521 4362 8.443160 CAAAATGAGTGAATCTACGCTCTAAAA 58.557 33.333 0.00 0.00 44.58 1.52
3522 4363 7.413000 GCAAAATGAGTGAATCTACGCTCTAAA 60.413 37.037 0.00 0.00 44.58 1.85
3523 4364 6.036083 GCAAAATGAGTGAATCTACGCTCTAA 59.964 38.462 0.00 0.00 44.58 2.10
3524 4365 5.520288 GCAAAATGAGTGAATCTACGCTCTA 59.480 40.000 0.00 0.00 44.58 2.43
3525 4366 4.331168 GCAAAATGAGTGAATCTACGCTCT 59.669 41.667 0.00 0.00 44.58 4.09
3526 4367 4.331168 AGCAAAATGAGTGAATCTACGCTC 59.669 41.667 0.00 0.00 44.55 5.03
3527 4368 4.256920 AGCAAAATGAGTGAATCTACGCT 58.743 39.130 0.00 0.00 0.00 5.07
3528 4369 4.331168 AGAGCAAAATGAGTGAATCTACGC 59.669 41.667 0.00 0.00 0.00 4.42
3529 4370 5.349817 ACAGAGCAAAATGAGTGAATCTACG 59.650 40.000 0.00 0.00 0.00 3.51
3530 4371 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
3531 4372 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
3532 4373 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
3533 4374 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
3534 4375 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
3535 4376 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
3536 4377 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
3537 4378 6.036517 GGACTACATACAGAGCAAAATGAGTG 59.963 42.308 0.00 0.00 0.00 3.51
3538 4379 6.109359 GGACTACATACAGAGCAAAATGAGT 58.891 40.000 0.00 0.00 0.00 3.41
3539 4380 6.108687 TGGACTACATACAGAGCAAAATGAG 58.891 40.000 0.00 0.00 0.00 2.90
3540 4381 6.048732 TGGACTACATACAGAGCAAAATGA 57.951 37.500 0.00 0.00 0.00 2.57
3541 4382 6.932356 ATGGACTACATACAGAGCAAAATG 57.068 37.500 0.00 0.00 38.26 2.32
3542 4383 9.060347 CAATATGGACTACATACAGAGCAAAAT 57.940 33.333 0.00 0.00 44.41 1.82
3543 4384 7.498900 CCAATATGGACTACATACAGAGCAAAA 59.501 37.037 0.00 0.00 44.41 2.44
3544 4385 6.992123 CCAATATGGACTACATACAGAGCAAA 59.008 38.462 0.00 0.00 44.41 3.68
3545 4386 6.326323 TCCAATATGGACTACATACAGAGCAA 59.674 38.462 0.00 0.00 42.67 3.91
3546 4387 5.838521 TCCAATATGGACTACATACAGAGCA 59.161 40.000 0.00 0.00 42.67 4.26
3547 4388 6.346477 TCCAATATGGACTACATACAGAGC 57.654 41.667 0.00 0.00 42.67 4.09
3560 4401 6.103205 AGCCCTTTTAGAGATTCCAATATGGA 59.897 38.462 0.00 0.00 46.61 3.41
3561 4402 6.310149 AGCCCTTTTAGAGATTCCAATATGG 58.690 40.000 0.00 0.00 39.43 2.74
3562 4403 7.830099 AAGCCCTTTTAGAGATTCCAATATG 57.170 36.000 0.00 0.00 0.00 1.78
3566 4407 9.936329 AAATATAAGCCCTTTTAGAGATTCCAA 57.064 29.630 0.00 0.00 0.00 3.53
3574 4415 9.807921 CCATTCCTAAATATAAGCCCTTTTAGA 57.192 33.333 0.00 0.00 34.90 2.10
3575 4416 9.807921 TCCATTCCTAAATATAAGCCCTTTTAG 57.192 33.333 0.00 0.00 33.47 1.85
3576 4417 9.807921 CTCCATTCCTAAATATAAGCCCTTTTA 57.192 33.333 0.00 0.00 0.00 1.52
3577 4418 7.730332 CCTCCATTCCTAAATATAAGCCCTTTT 59.270 37.037 0.00 0.00 0.00 2.27
3578 4419 7.241628 CCTCCATTCCTAAATATAAGCCCTTT 58.758 38.462 0.00 0.00 0.00 3.11
3579 4420 6.240586 CCCTCCATTCCTAAATATAAGCCCTT 60.241 42.308 0.00 0.00 0.00 3.95
3580 4421 5.254032 CCCTCCATTCCTAAATATAAGCCCT 59.746 44.000 0.00 0.00 0.00 5.19
3581 4422 5.253096 TCCCTCCATTCCTAAATATAAGCCC 59.747 44.000 0.00 0.00 0.00 5.19
3582 4423 6.012421 ACTCCCTCCATTCCTAAATATAAGCC 60.012 42.308 0.00 0.00 0.00 4.35
3583 4424 7.021998 ACTCCCTCCATTCCTAAATATAAGC 57.978 40.000 0.00 0.00 0.00 3.09
3584 4425 9.101325 TGTACTCCCTCCATTCCTAAATATAAG 57.899 37.037 0.00 0.00 0.00 1.73
3585 4426 8.877195 GTGTACTCCCTCCATTCCTAAATATAA 58.123 37.037 0.00 0.00 0.00 0.98
3586 4427 7.177921 CGTGTACTCCCTCCATTCCTAAATATA 59.822 40.741 0.00 0.00 0.00 0.86
3587 4428 6.014499 CGTGTACTCCCTCCATTCCTAAATAT 60.014 42.308 0.00 0.00 0.00 1.28
3588 4429 5.303589 CGTGTACTCCCTCCATTCCTAAATA 59.696 44.000 0.00 0.00 0.00 1.40
3589 4430 4.101119 CGTGTACTCCCTCCATTCCTAAAT 59.899 45.833 0.00 0.00 0.00 1.40
3590 4431 3.449737 CGTGTACTCCCTCCATTCCTAAA 59.550 47.826 0.00 0.00 0.00 1.85
3591 4432 3.028850 CGTGTACTCCCTCCATTCCTAA 58.971 50.000 0.00 0.00 0.00 2.69
3592 4433 2.242965 TCGTGTACTCCCTCCATTCCTA 59.757 50.000 0.00 0.00 0.00 2.94
3593 4434 1.006758 TCGTGTACTCCCTCCATTCCT 59.993 52.381 0.00 0.00 0.00 3.36
3594 4435 1.481871 TCGTGTACTCCCTCCATTCC 58.518 55.000 0.00 0.00 0.00 3.01
3595 4436 3.305471 GCTATCGTGTACTCCCTCCATTC 60.305 52.174 0.00 0.00 0.00 2.67
3596 4437 2.628657 GCTATCGTGTACTCCCTCCATT 59.371 50.000 0.00 0.00 0.00 3.16
3597 4438 2.240279 GCTATCGTGTACTCCCTCCAT 58.760 52.381 0.00 0.00 0.00 3.41
3598 4439 1.064240 TGCTATCGTGTACTCCCTCCA 60.064 52.381 0.00 0.00 0.00 3.86
3599 4440 1.688772 TGCTATCGTGTACTCCCTCC 58.311 55.000 0.00 0.00 0.00 4.30
3600 4441 2.623889 ACATGCTATCGTGTACTCCCTC 59.376 50.000 0.00 0.00 40.45 4.30
3601 4442 2.667470 ACATGCTATCGTGTACTCCCT 58.333 47.619 0.00 0.00 40.45 4.20
3602 4443 3.454371 AACATGCTATCGTGTACTCCC 57.546 47.619 0.00 0.00 41.33 4.30
3603 4444 3.802685 GGAAACATGCTATCGTGTACTCC 59.197 47.826 0.00 4.91 41.33 3.85
3604 4445 3.802685 GGGAAACATGCTATCGTGTACTC 59.197 47.826 0.00 0.00 41.33 2.59
3605 4446 3.196901 TGGGAAACATGCTATCGTGTACT 59.803 43.478 0.00 0.00 41.33 2.73
3626 4467 3.612860 CGTCAGTCCCGAACTAGAAAATG 59.387 47.826 0.00 0.00 36.07 2.32
3627 4468 3.368116 CCGTCAGTCCCGAACTAGAAAAT 60.368 47.826 0.00 0.00 36.07 1.82
3631 4472 0.679002 CCCGTCAGTCCCGAACTAGA 60.679 60.000 0.00 0.00 36.07 2.43
3714 4555 2.236555 GGGTATGCCATACACCCCA 58.763 57.895 16.26 0.00 45.34 4.96
3791 4632 6.710295 TGAAGTTCTGCATAGCTAACAAAAGA 59.290 34.615 4.17 0.00 31.25 2.52
3846 4687 8.748412 CCCCTGAGATTTACATTTTATGAACAA 58.252 33.333 0.00 0.00 0.00 2.83
3902 4743 4.703897 TGAAGTTGACCTAAGAACCACAG 58.296 43.478 0.00 0.00 0.00 3.66
3906 4747 8.451748 GTTCATATTGAAGTTGACCTAAGAACC 58.548 37.037 0.00 0.00 37.00 3.62
4117 5010 7.286316 AGACCAAGCCCTTATCTTGAAATTATG 59.714 37.037 4.48 0.00 42.52 1.90
4133 5026 1.840635 ACTGAATAGGAGACCAAGCCC 59.159 52.381 0.00 0.00 0.00 5.19
4152 5045 6.643770 TCGGAAGAACAACATCTTTGTAGTAC 59.356 38.462 0.00 0.00 39.70 2.73
4182 5075 7.781056 TGGCTTTAACTCACTTTTCTTCAATT 58.219 30.769 0.00 0.00 0.00 2.32
4193 5086 5.869649 AACCAAATTGGCTTTAACTCACT 57.130 34.783 12.67 0.00 42.67 3.41
4366 5259 0.684479 TAGCCAGGCATCTCAGTCGT 60.684 55.000 15.80 0.00 0.00 4.34
4624 5560 1.949525 GAACGCAACCATATCCTGCAT 59.050 47.619 0.00 0.00 35.78 3.96
4710 5646 3.191791 GCCTAGTAAATTTTCCACGCCAA 59.808 43.478 0.00 0.00 0.00 4.52
4801 5737 6.755141 AGTAACACCAACATTACATACTAGCG 59.245 38.462 0.00 0.00 34.36 4.26
4881 5817 5.706833 TGCTGAAATCAGACAAGATTTGCTA 59.293 36.000 14.43 0.00 45.51 3.49
4891 5827 2.551032 CAACTGCTGCTGAAATCAGACA 59.449 45.455 14.43 10.16 46.59 3.41
4956 5892 6.687604 AGCATTAATCCAACCTAAACAACAC 58.312 36.000 0.00 0.00 0.00 3.32
5380 6316 3.366440 ACGTGGACTGTCAAAGAGTAC 57.634 47.619 10.38 0.00 0.00 2.73
5397 6333 4.099881 ACCACAATAACATACCCGATACGT 59.900 41.667 0.00 0.00 0.00 3.57
5436 6372 9.533253 AACTGAAAAAGATGGTGAAAAGTAATG 57.467 29.630 0.00 0.00 0.00 1.90
5447 6383 7.123355 TGATTCCAAAACTGAAAAAGATGGT 57.877 32.000 0.00 0.00 32.80 3.55
5502 6467 2.754012 TCCATCTGCATAAAAGGGGG 57.246 50.000 0.00 0.00 0.00 5.40
5535 6500 3.800261 GCGACCTCATATTAAGCAGCTGA 60.800 47.826 20.43 0.00 0.00 4.26
5580 6545 8.976986 ATACAGATTCATTTGCTCTTTTCAAC 57.023 30.769 0.00 0.00 0.00 3.18
5610 6575 0.895100 TGCAGTCAGGGCATGGAAAC 60.895 55.000 0.00 0.00 36.11 2.78
5617 6582 2.674033 GCACATGCAGTCAGGGCA 60.674 61.111 0.00 0.00 46.66 5.36
5647 6612 3.053693 TGGATGGATTTAGGGTGTTCTGG 60.054 47.826 0.00 0.00 0.00 3.86
5654 6619 1.912862 AGCCTGGATGGATTTAGGGT 58.087 50.000 0.00 0.00 38.35 4.34
5691 6656 2.479566 TCAGGATCAGTCAAACCAGC 57.520 50.000 0.00 0.00 0.00 4.85
5914 6886 4.299485 AGATGGTTAAGACCTAAGAGGGG 58.701 47.826 0.00 0.00 46.66 4.79
5915 6887 5.212745 AGAGATGGTTAAGACCTAAGAGGG 58.787 45.833 0.00 0.00 46.66 4.30
5953 6927 4.313282 GGAACACTACAAGTCTACAACCC 58.687 47.826 0.00 0.00 0.00 4.11
6062 7036 8.932791 GTTACTCCAAAGAATAAAATCTCGACA 58.067 33.333 0.00 0.00 0.00 4.35
6249 7261 4.319139 TGCTCAGACAATCTCTAGATGC 57.681 45.455 0.00 0.00 34.49 3.91
6285 7297 2.572290 ACCTCACTTGTTTACCTGTGC 58.428 47.619 0.00 0.00 0.00 4.57
6317 7329 6.533367 ACTCAACAAGCGCAAAGAAATTTAAA 59.467 30.769 11.47 0.00 0.00 1.52
6318 7330 6.019961 CACTCAACAAGCGCAAAGAAATTTAA 60.020 34.615 11.47 0.00 0.00 1.52
6319 7331 5.458452 CACTCAACAAGCGCAAAGAAATTTA 59.542 36.000 11.47 0.00 0.00 1.40
6320 7332 4.268405 CACTCAACAAGCGCAAAGAAATTT 59.732 37.500 11.47 0.00 0.00 1.82
6321 7333 3.798337 CACTCAACAAGCGCAAAGAAATT 59.202 39.130 11.47 0.00 0.00 1.82
6322 7334 3.066621 TCACTCAACAAGCGCAAAGAAAT 59.933 39.130 11.47 0.00 0.00 2.17
6323 7335 2.421775 TCACTCAACAAGCGCAAAGAAA 59.578 40.909 11.47 0.00 0.00 2.52
6324 7336 2.013400 TCACTCAACAAGCGCAAAGAA 58.987 42.857 11.47 0.00 0.00 2.52
6325 7337 1.599071 CTCACTCAACAAGCGCAAAGA 59.401 47.619 11.47 0.00 0.00 2.52
6326 7338 1.334419 CCTCACTCAACAAGCGCAAAG 60.334 52.381 11.47 0.19 0.00 2.77
6327 7339 0.662619 CCTCACTCAACAAGCGCAAA 59.337 50.000 11.47 0.00 0.00 3.68
6328 7340 0.463654 ACCTCACTCAACAAGCGCAA 60.464 50.000 11.47 0.00 0.00 4.85
6329 7341 1.146041 ACCTCACTCAACAAGCGCA 59.854 52.632 11.47 0.00 0.00 6.09
6330 7342 1.571460 CACCTCACTCAACAAGCGC 59.429 57.895 0.00 0.00 0.00 5.92
6331 7343 0.882042 AGCACCTCACTCAACAAGCG 60.882 55.000 0.00 0.00 0.00 4.68
6332 7344 0.871057 GAGCACCTCACTCAACAAGC 59.129 55.000 0.00 0.00 34.18 4.01
6333 7345 2.540265 AGAGCACCTCACTCAACAAG 57.460 50.000 0.00 0.00 36.58 3.16
6334 7346 4.623932 ATAAGAGCACCTCACTCAACAA 57.376 40.909 0.00 0.00 36.58 2.83
6335 7347 4.623932 AATAAGAGCACCTCACTCAACA 57.376 40.909 0.00 0.00 36.58 3.33
6336 7348 5.948992 AAAATAAGAGCACCTCACTCAAC 57.051 39.130 0.00 0.00 36.58 3.18
6337 7349 9.905713 ATAATAAAATAAGAGCACCTCACTCAA 57.094 29.630 0.00 0.00 36.58 3.02
6338 7350 9.905713 AATAATAAAATAAGAGCACCTCACTCA 57.094 29.630 0.00 0.00 36.58 3.41
6344 7356 8.730680 CGGCATAATAATAAAATAAGAGCACCT 58.269 33.333 0.00 0.00 0.00 4.00
6345 7357 8.726988 TCGGCATAATAATAAAATAAGAGCACC 58.273 33.333 0.00 0.00 0.00 5.01
6346 7358 9.760660 CTCGGCATAATAATAAAATAAGAGCAC 57.239 33.333 0.00 0.00 0.00 4.40
6347 7359 8.946085 CCTCGGCATAATAATAAAATAAGAGCA 58.054 33.333 0.00 0.00 0.00 4.26
6348 7360 9.162764 TCCTCGGCATAATAATAAAATAAGAGC 57.837 33.333 0.00 0.00 0.00 4.09
6350 7362 9.146984 CGTCCTCGGCATAATAATAAAATAAGA 57.853 33.333 0.00 0.00 0.00 2.10
6351 7363 8.932791 ACGTCCTCGGCATAATAATAAAATAAG 58.067 33.333 0.00 0.00 41.85 1.73
6352 7364 8.836268 ACGTCCTCGGCATAATAATAAAATAA 57.164 30.769 0.00 0.00 41.85 1.40
6353 7365 9.926158 TTACGTCCTCGGCATAATAATAAAATA 57.074 29.630 0.00 0.00 41.85 1.40
6354 7366 8.836268 TTACGTCCTCGGCATAATAATAAAAT 57.164 30.769 0.00 0.00 41.85 1.82
6355 7367 7.095523 GCTTACGTCCTCGGCATAATAATAAAA 60.096 37.037 0.00 0.00 41.85 1.52
6356 7368 6.366877 GCTTACGTCCTCGGCATAATAATAAA 59.633 38.462 0.00 0.00 41.85 1.40
6357 7369 5.865552 GCTTACGTCCTCGGCATAATAATAA 59.134 40.000 0.00 0.00 41.85 1.40
6358 7370 5.404946 GCTTACGTCCTCGGCATAATAATA 58.595 41.667 0.00 0.00 41.85 0.98
6359 7371 4.243270 GCTTACGTCCTCGGCATAATAAT 58.757 43.478 0.00 0.00 41.85 1.28
6369 7423 2.579787 CTGCCGCTTACGTCCTCG 60.580 66.667 0.00 0.00 43.34 4.63
6388 7442 4.210120 CGACTATGGAAGCTGCTTTACATC 59.790 45.833 26.13 17.13 0.00 3.06
6403 7457 2.125326 TGACCGGCCTCGACTATGG 61.125 63.158 0.00 0.00 39.00 2.74
6488 7543 0.239347 CCGCCAGCTTCTTTTCACAG 59.761 55.000 0.00 0.00 0.00 3.66
6505 7560 2.511145 GAAGAGCAGAGCAGCCCG 60.511 66.667 0.00 0.00 34.23 6.13
6570 7625 3.335579 ACGTTGAGCCCTTGATTTACTC 58.664 45.455 0.00 0.00 0.00 2.59
6592 7647 2.989253 TCTTCCAGACCGCGCAGA 60.989 61.111 8.75 0.00 0.00 4.26
6619 7674 1.938663 GCGACTGAACTTTTCTTCGC 58.061 50.000 15.11 15.11 46.47 4.70
6620 7675 2.135933 AGGCGACTGAACTTTTCTTCG 58.864 47.619 0.00 6.28 41.13 3.79
6621 7676 3.850010 GCAAGGCGACTGAACTTTTCTTC 60.850 47.826 0.00 0.00 42.68 2.87
6638 7693 5.957842 TTCATGTTACCAAAGTAGCAAGG 57.042 39.130 0.00 0.00 42.13 3.61
6645 7700 4.037923 CCTGCACTTTCATGTTACCAAAGT 59.962 41.667 4.17 4.17 40.28 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.