Multiple sequence alignment - TraesCS3A01G358500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G358500 chr3A 100.000 3606 0 0 1 3606 606662551 606658946 0.000000e+00 6660.0
1 TraesCS3A01G358500 chr3D 88.512 1680 94 52 1748 3379 463527704 463526076 0.000000e+00 1941.0
2 TraesCS3A01G358500 chr3D 87.562 1608 108 34 29 1570 463529662 463528081 0.000000e+00 1777.0
3 TraesCS3A01G358500 chr3D 92.208 154 10 2 1586 1738 463527992 463527840 2.180000e-52 217.0
4 TraesCS3A01G358500 chr3D 98.095 105 1 1 3500 3604 463418650 463418547 7.950000e-42 182.0
5 TraesCS3A01G358500 chr3D 90.909 44 2 2 521 564 429084947 429084906 1.400000e-04 58.4
6 TraesCS3A01G358500 chr3D 96.875 32 1 0 521 552 370110066 370110035 2.000000e-03 54.7
7 TraesCS3A01G358500 chr3B 89.344 1417 79 29 1748 3135 616774144 616772771 0.000000e+00 1714.0
8 TraesCS3A01G358500 chr3B 89.527 592 33 3 659 1226 616775462 616774876 0.000000e+00 723.0
9 TraesCS3A01G358500 chr3B 91.354 347 25 4 1224 1570 616774831 616774490 1.520000e-128 470.0
10 TraesCS3A01G358500 chr3B 92.814 167 10 2 1586 1751 616774347 616774182 1.290000e-59 241.0
11 TraesCS3A01G358500 chr3B 93.197 147 9 1 3445 3591 616747823 616747678 7.840000e-52 215.0
12 TraesCS3A01G358500 chr5A 82.841 542 66 19 1723 2252 35280080 35279554 9.120000e-126 460.0
13 TraesCS3A01G358500 chr5A 95.935 123 5 0 990 1112 35281016 35280894 2.200000e-47 200.0
14 TraesCS3A01G358500 chr5A 94.737 38 1 1 521 558 326662874 326662910 1.400000e-04 58.4
15 TraesCS3A01G358500 chr5D 86.802 394 35 12 1862 2252 44783686 44783307 1.200000e-114 424.0
16 TraesCS3A01G358500 chr5D 85.714 203 24 3 990 1190 44785304 44785105 3.650000e-50 209.0
17 TraesCS3A01G358500 chr5B 93.773 273 11 6 1862 2132 297522293 297522561 4.340000e-109 405.0
18 TraesCS3A01G358500 chr5B 93.662 142 7 2 990 1130 44658095 44657955 1.010000e-50 211.0
19 TraesCS3A01G358500 chr6B 93.407 273 12 6 1862 2132 10961119 10960851 2.020000e-107 399.0
20 TraesCS3A01G358500 chr6B 93.407 273 12 6 1862 2132 455122153 455121885 2.020000e-107 399.0
21 TraesCS3A01G358500 chr4B 93.407 273 12 6 1862 2132 16429605 16429337 2.020000e-107 399.0
22 TraesCS3A01G358500 chr1B 93.407 273 12 6 1862 2132 183641364 183641632 2.020000e-107 399.0
23 TraesCS3A01G358500 chr1B 96.330 109 4 0 999 1107 512157163 512157271 2.860000e-41 180.0
24 TraesCS3A01G358500 chr1D 97.273 110 3 0 999 1108 382203565 382203674 1.710000e-43 187.0
25 TraesCS3A01G358500 chr1D 92.683 41 1 2 522 561 445196812 445196773 1.400000e-04 58.4
26 TraesCS3A01G358500 chr1A 95.455 110 5 0 999 1108 482277204 482277313 3.700000e-40 176.0
27 TraesCS3A01G358500 chr7A 92.727 110 8 0 999 1108 110964620 110964729 3.730000e-35 159.0
28 TraesCS3A01G358500 chr7B 100.000 30 0 0 520 549 149610296 149610325 5.030000e-04 56.5
29 TraesCS3A01G358500 chr2D 100.000 29 0 0 521 549 170617925 170617953 2.000000e-03 54.7
30 TraesCS3A01G358500 chrUn 90.476 42 1 2 522 560 101887469 101887428 7.000000e-03 52.8
31 TraesCS3A01G358500 chrUn 100.000 28 0 0 522 549 308089942 308089969 7.000000e-03 52.8
32 TraesCS3A01G358500 chr4D 96.774 31 1 0 522 552 500391380 500391350 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G358500 chr3A 606658946 606662551 3605 True 6660.000000 6660 100.000000 1 3606 1 chr3A.!!$R1 3605
1 TraesCS3A01G358500 chr3D 463526076 463529662 3586 True 1311.666667 1941 89.427333 29 3379 3 chr3D.!!$R4 3350
2 TraesCS3A01G358500 chr3B 616772771 616775462 2691 True 787.000000 1714 90.759750 659 3135 4 chr3B.!!$R2 2476
3 TraesCS3A01G358500 chr5A 35279554 35281016 1462 True 330.000000 460 89.388000 990 2252 2 chr5A.!!$R1 1262
4 TraesCS3A01G358500 chr5D 44783307 44785304 1997 True 316.500000 424 86.258000 990 2252 2 chr5D.!!$R1 1262

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 117 0.036952 CTCGCCAAGCCTCAAGAGAA 60.037 55.0 0.00 0.0 0.0 2.87 F
484 497 0.310543 GCGCACAACCTTCACAATGA 59.689 50.0 0.30 0.0 0.0 2.57 F
993 1057 0.457851 CGTCTCAGGTTAGCAGGAGG 59.542 60.0 3.94 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1112 1179 0.252284 CTAGGACAGTGGAGGTGGGT 60.252 60.000 0.00 0.00 0.00 4.51 R
1525 1768 1.748122 CCTGCAGGGCTAGCAACTG 60.748 63.158 26.14 25.76 42.17 3.16 R
2640 3841 1.309499 TGGAAATACGGGGCAAAGCG 61.309 55.000 0.00 0.00 0.00 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.618287 TGTCTTGCAAATATACATGCTACC 57.382 37.500 0.00 1.00 42.97 3.18
33 34 5.530915 TGTCTTGCAAATATACATGCTACCC 59.469 40.000 0.00 1.27 42.97 3.69
40 41 7.122501 TGCAAATATACATGCTACCCAATATGG 59.877 37.037 11.59 0.00 42.97 2.74
51 52 5.337652 GCTACCCAATATGGTCATAGAGGAC 60.338 48.000 10.95 0.00 39.91 3.85
57 58 2.350057 TGGTCATAGAGGACGAGAGG 57.650 55.000 0.00 0.00 38.70 3.69
64 65 1.917872 AGAGGACGAGAGGGATATGC 58.082 55.000 0.00 0.00 0.00 3.14
65 66 1.427368 AGAGGACGAGAGGGATATGCT 59.573 52.381 0.00 0.00 0.00 3.79
67 68 3.013921 GAGGACGAGAGGGATATGCTAG 58.986 54.545 0.00 0.00 0.00 3.42
95 105 1.523154 GGCATTGACAACCTCGCCAA 61.523 55.000 12.51 0.00 39.38 4.52
101 111 2.032528 CAACCTCGCCAAGCCTCA 59.967 61.111 0.00 0.00 0.00 3.86
102 112 1.600636 CAACCTCGCCAAGCCTCAA 60.601 57.895 0.00 0.00 0.00 3.02
104 114 1.768684 AACCTCGCCAAGCCTCAAGA 61.769 55.000 0.00 0.00 0.00 3.02
107 117 0.036952 CTCGCCAAGCCTCAAGAGAA 60.037 55.000 0.00 0.00 0.00 2.87
113 123 2.291741 CCAAGCCTCAAGAGAACACAAC 59.708 50.000 0.00 0.00 0.00 3.32
115 125 1.490490 AGCCTCAAGAGAACACAACCA 59.510 47.619 0.00 0.00 0.00 3.67
116 126 1.604278 GCCTCAAGAGAACACAACCAC 59.396 52.381 0.00 0.00 0.00 4.16
117 127 2.917933 CCTCAAGAGAACACAACCACA 58.082 47.619 0.00 0.00 0.00 4.17
118 128 3.480470 CCTCAAGAGAACACAACCACAT 58.520 45.455 0.00 0.00 0.00 3.21
125 136 2.362077 AGAACACAACCACATTCAAGCC 59.638 45.455 0.00 0.00 0.00 4.35
136 147 3.068590 CACATTCAAGCCTTTGTTGAGGT 59.931 43.478 0.00 0.00 39.11 3.85
137 148 3.068590 ACATTCAAGCCTTTGTTGAGGTG 59.931 43.478 0.00 0.00 39.11 4.00
141 152 1.897560 AGCCTTTGTTGAGGTGTAGC 58.102 50.000 0.00 0.00 39.11 3.58
142 153 1.142870 AGCCTTTGTTGAGGTGTAGCA 59.857 47.619 0.00 0.00 39.11 3.49
148 159 3.667497 TGTTGAGGTGTAGCAGAAGAG 57.333 47.619 0.00 0.00 0.00 2.85
174 185 1.562942 ACATGGCCTCACATCATCAGT 59.437 47.619 3.32 0.00 0.00 3.41
201 212 5.124645 AAGAAGGATCTCATTGAGCATCAC 58.875 41.667 19.05 12.56 39.32 3.06
203 214 7.131439 AAGAAGGATCTCATTGAGCATCACTG 61.131 42.308 19.05 0.00 45.96 3.66
213 224 2.185494 GCATCACTGGCAGCTAGGC 61.185 63.158 15.89 12.46 44.50 3.93
224 235 1.000731 GCAGCTAGGCAGGAGATAGTG 59.999 57.143 0.00 0.00 0.00 2.74
226 237 2.035704 CAGCTAGGCAGGAGATAGTGTG 59.964 54.545 0.00 0.00 0.00 3.82
236 247 6.341316 GCAGGAGATAGTGTGTCTAAATTGA 58.659 40.000 0.00 0.00 31.94 2.57
284 295 4.551388 GAACAATTGGTTTGGTCGCATTA 58.449 39.130 10.83 0.00 41.96 1.90
285 296 4.799564 ACAATTGGTTTGGTCGCATTAT 57.200 36.364 10.83 0.00 39.80 1.28
291 302 5.707242 TGGTTTGGTCGCATTATTTGTTA 57.293 34.783 0.00 0.00 0.00 2.41
406 417 7.657761 GGATAGAAAGAACGTATGACCAATGAT 59.342 37.037 0.00 0.00 0.00 2.45
410 421 7.707035 AGAAAGAACGTATGACCAATGATAGAC 59.293 37.037 0.00 0.00 0.00 2.59
412 423 5.298527 AGAACGTATGACCAATGATAGACGA 59.701 40.000 0.00 0.00 33.50 4.20
414 425 4.579340 ACGTATGACCAATGATAGACGAGT 59.421 41.667 0.00 0.00 33.50 4.18
418 429 3.381590 TGACCAATGATAGACGAGTCCTG 59.618 47.826 0.00 0.00 0.00 3.86
421 432 3.551863 CCAATGATAGACGAGTCCTGCTC 60.552 52.174 0.00 0.00 40.77 4.26
422 433 2.420058 TGATAGACGAGTCCTGCTCA 57.580 50.000 0.00 0.00 44.33 4.26
423 434 2.937519 TGATAGACGAGTCCTGCTCAT 58.062 47.619 0.00 0.00 44.33 2.90
425 436 4.068599 TGATAGACGAGTCCTGCTCATAG 58.931 47.826 0.00 0.00 44.33 2.23
445 458 7.458397 TCATAGGAAAAATACGAAGGCCATAT 58.542 34.615 5.01 0.00 0.00 1.78
452 465 9.394477 GAAAAATACGAAGGCCATATTTATGAC 57.606 33.333 5.01 0.31 35.75 3.06
474 487 1.535462 ACTCTGTATTTGCGCACAACC 59.465 47.619 11.12 0.00 34.87 3.77
484 497 0.310543 GCGCACAACCTTCACAATGA 59.689 50.000 0.30 0.00 0.00 2.57
486 499 2.607771 GCGCACAACCTTCACAATGATT 60.608 45.455 0.30 0.00 0.00 2.57
488 501 4.406069 CGCACAACCTTCACAATGATTAG 58.594 43.478 0.00 0.00 0.00 1.73
549 562 7.859325 ACTAAACCAGCGACAATTAATATGT 57.141 32.000 0.00 0.00 0.00 2.29
555 568 8.492673 ACCAGCGACAATTAATATGTATATGG 57.507 34.615 16.00 16.00 34.83 2.74
627 643 2.829120 ACAACTAGAGGCAGTCCTTCTC 59.171 50.000 0.00 0.00 44.46 2.87
631 647 4.164843 CTAGAGGCAGTCCTTCTCTAGT 57.835 50.000 14.85 0.00 45.77 2.57
632 648 3.012934 AGAGGCAGTCCTTCTCTAGTC 57.987 52.381 0.00 0.00 44.46 2.59
634 650 3.783642 AGAGGCAGTCCTTCTCTAGTCTA 59.216 47.826 0.00 0.00 44.46 2.59
635 651 4.134563 GAGGCAGTCCTTCTCTAGTCTAG 58.865 52.174 0.00 0.00 44.46 2.43
650 685 9.880157 TCTCTAGTCTAGTCTCTAGAAAAAGAC 57.120 37.037 6.77 12.79 41.01 3.01
656 691 9.752961 GTCTAGTCTCTAGAAAAAGACAAAAGT 57.247 33.333 11.25 0.00 43.52 2.66
689 728 2.031870 TGACTTCGGTCCGATCATGAT 58.968 47.619 16.23 8.25 43.85 2.45
882 922 2.289002 GCATCCATTCTCAAGGTAAGCG 59.711 50.000 0.00 0.00 0.00 4.68
883 923 2.024176 TCCATTCTCAAGGTAAGCGC 57.976 50.000 0.00 0.00 0.00 5.92
884 924 1.017387 CCATTCTCAAGGTAAGCGCC 58.983 55.000 2.29 0.00 0.00 6.53
885 925 0.652592 CATTCTCAAGGTAAGCGCCG 59.347 55.000 2.29 0.00 0.00 6.46
927 991 2.847234 ACCGCCCTTCACCTCACA 60.847 61.111 0.00 0.00 0.00 3.58
963 1027 6.007936 TGATTATTCCGGTTTGTTCTTGTG 57.992 37.500 0.00 0.00 0.00 3.33
968 1032 1.335872 CCGGTTTGTTCTTGTGCCATC 60.336 52.381 0.00 0.00 0.00 3.51
972 1036 1.163420 TTGTTCTTGTGCCATCGCGT 61.163 50.000 5.77 0.00 38.08 6.01
993 1057 0.457851 CGTCTCAGGTTAGCAGGAGG 59.542 60.000 3.94 0.00 0.00 4.30
1112 1179 2.763215 CAAGGGGGTAAGCAGCCA 59.237 61.111 0.00 0.00 44.67 4.75
1144 1212 0.535797 GTCCTAGTTTCTCCCCCACG 59.464 60.000 0.00 0.00 0.00 4.94
1199 1271 8.133627 GCAATTGATCTACCCATGCATATTATC 58.866 37.037 10.34 0.00 32.80 1.75
1207 1279 6.829229 ACCCATGCATATTATCATGACTTG 57.171 37.500 0.00 0.00 41.82 3.16
1235 1367 9.586435 GCTTGTTGTTTAGGCTTATTCAATAAT 57.414 29.630 0.00 0.00 0.00 1.28
1273 1460 4.578871 TGGTGAGATGTCGACATTCAATT 58.421 39.130 30.46 9.79 36.57 2.32
1364 1552 5.735285 AGGGGTAGTGTTCTAAGTGTTAC 57.265 43.478 0.00 0.00 0.00 2.50
1429 1617 5.241506 CAGGTTGTCTGGTTAAATGTGTGAT 59.758 40.000 0.00 0.00 39.76 3.06
1492 1695 8.993424 AGGACTAGGAAAATGTACATATTGAGT 58.007 33.333 9.21 8.08 0.00 3.41
1493 1696 9.614792 GGACTAGGAAAATGTACATATTGAGTT 57.385 33.333 9.21 0.00 0.00 3.01
1501 1704 4.191544 TGTACATATTGAGTTCAGCCTGC 58.808 43.478 0.00 0.00 0.00 4.85
1525 1768 3.621558 CCTGTAATTCTTGGAACTCCCC 58.378 50.000 0.00 0.00 34.29 4.81
1570 1829 6.208402 TCAAATGTGCCAGCTTAATCAAGTAA 59.792 34.615 0.00 0.00 34.00 2.24
1627 2593 1.568606 CTCATGTGTCGATCTGGCTG 58.431 55.000 0.00 0.00 0.00 4.85
1641 2607 4.955811 TCTGGCTGTTCTTTCTGACTTA 57.044 40.909 0.00 0.00 0.00 2.24
1642 2608 5.489792 TCTGGCTGTTCTTTCTGACTTAT 57.510 39.130 0.00 0.00 0.00 1.73
1643 2609 5.240891 TCTGGCTGTTCTTTCTGACTTATG 58.759 41.667 0.00 0.00 0.00 1.90
1673 2678 9.712359 CTGATACAGACATGTTGTATTTTCATG 57.288 33.333 22.95 13.51 40.75 3.07
1808 2946 9.945904 TTTAAACAAAACTTGTGGGAAACTAAT 57.054 25.926 0.00 0.00 44.59 1.73
1848 2989 6.701400 GCATTTGTATGGTTCTCTGTGTTTTT 59.299 34.615 0.00 0.00 32.15 1.94
2223 3370 8.740123 TTTTTGTTCTAGATGACTTGGTTACA 57.260 30.769 0.00 0.00 0.00 2.41
2224 3371 8.740123 TTTTGTTCTAGATGACTTGGTTACAA 57.260 30.769 0.00 0.00 34.87 2.41
2225 3372 8.740123 TTTGTTCTAGATGACTTGGTTACAAA 57.260 30.769 7.58 7.58 35.89 2.83
2226 3373 7.962964 TGTTCTAGATGACTTGGTTACAAAG 57.037 36.000 0.00 0.00 35.89 2.77
2227 3374 7.732025 TGTTCTAGATGACTTGGTTACAAAGA 58.268 34.615 6.48 0.00 35.89 2.52
2228 3375 8.375506 TGTTCTAGATGACTTGGTTACAAAGAT 58.624 33.333 6.48 0.00 35.89 2.40
2229 3376 8.874816 GTTCTAGATGACTTGGTTACAAAGATC 58.125 37.037 6.48 0.16 35.89 2.75
2230 3377 8.134202 TCTAGATGACTTGGTTACAAAGATCA 57.866 34.615 6.48 6.82 35.89 2.92
2231 3378 8.035394 TCTAGATGACTTGGTTACAAAGATCAC 58.965 37.037 6.48 2.87 35.89 3.06
2232 3379 6.773638 AGATGACTTGGTTACAAAGATCACT 58.226 36.000 6.48 4.66 35.89 3.41
2233 3380 7.907389 AGATGACTTGGTTACAAAGATCACTA 58.093 34.615 6.48 0.00 35.89 2.74
2234 3381 8.037758 AGATGACTTGGTTACAAAGATCACTAG 58.962 37.037 6.48 0.00 35.89 2.57
2235 3382 7.062749 TGACTTGGTTACAAAGATCACTAGT 57.937 36.000 6.48 0.00 35.89 2.57
2236 3383 6.929049 TGACTTGGTTACAAAGATCACTAGTG 59.071 38.462 17.17 17.17 35.89 2.74
2237 3384 5.701290 ACTTGGTTACAAAGATCACTAGTGC 59.299 40.000 18.45 5.18 35.89 4.40
2262 3437 7.359598 GCATAATTCGTCCTCTTACATCATGAC 60.360 40.741 0.00 0.00 0.00 3.06
2373 3572 4.147321 ACAGCATCAACTTGGAAGATGTT 58.853 39.130 0.00 0.00 40.86 2.71
2374 3573 4.482386 CAGCATCAACTTGGAAGATGTTG 58.518 43.478 0.00 0.00 41.95 3.33
2433 3633 7.758980 TGGTCATAATCATTGTTGTTTATGTGC 59.241 33.333 12.80 9.14 41.77 4.57
2525 3726 9.169592 TCCTGTAATTTCTTTTTCCCTATAACG 57.830 33.333 0.00 0.00 0.00 3.18
2587 3788 3.884774 TCTGGTGGTGGTGGTGCC 61.885 66.667 0.00 0.00 37.90 5.01
2705 3906 3.563808 TGGCAATTGGATACGAATGTAGC 59.436 43.478 7.72 0.00 42.51 3.58
2729 3930 5.237127 CACATTGCACTTCAAGTTCAGAGTA 59.763 40.000 0.00 0.00 38.22 2.59
2766 3967 9.941325 TTTTTGACACTATATTTGCAATTGGAT 57.059 25.926 7.72 0.00 0.00 3.41
2851 4055 4.213482 AGTGCGTGGTTTCTATTTGAGAAC 59.787 41.667 0.00 0.00 44.12 3.01
2881 4085 7.403312 TCACCTTTTCTTCACAGAAATCAAA 57.597 32.000 0.00 0.00 46.36 2.69
2908 4112 9.931210 CGTCTTTGTTTTCTTACTTTTGTATCT 57.069 29.630 0.00 0.00 34.49 1.98
2931 4135 2.634940 AGCTATCTGTATGGCGATGGTT 59.365 45.455 0.00 0.00 43.90 3.67
3012 4227 4.967084 TTAGGACCTTGAGCTGTTTGTA 57.033 40.909 0.00 0.00 0.00 2.41
3014 4229 2.152016 GGACCTTGAGCTGTTTGTACC 58.848 52.381 0.00 0.00 0.00 3.34
3051 4266 0.958822 GGGAGTGTGCGGTTTTCATT 59.041 50.000 0.00 0.00 0.00 2.57
3056 4271 3.472652 AGTGTGCGGTTTTCATTGTCTA 58.527 40.909 0.00 0.00 0.00 2.59
3135 4350 2.554032 CAAAATCACGGAACCTGAAGCT 59.446 45.455 0.00 0.00 0.00 3.74
3203 4444 2.347114 CACTCATGGTGGTCGGCA 59.653 61.111 6.46 0.00 41.90 5.69
3207 4448 2.829914 CATGGTGGTCGGCATGGG 60.830 66.667 0.00 0.00 0.00 4.00
3228 4469 0.249238 GCTATCTGGTCAGCACGGAG 60.249 60.000 0.00 0.00 37.73 4.63
3233 4474 0.036010 CTGGTCAGCACGGAGGAAAT 60.036 55.000 0.00 0.00 0.00 2.17
3235 4476 1.084370 GGTCAGCACGGAGGAAATCG 61.084 60.000 0.00 0.00 0.00 3.34
3289 4530 0.984109 GTTTGCAACGCATGGATTCG 59.016 50.000 0.00 0.00 38.76 3.34
3290 4531 0.732196 TTTGCAACGCATGGATTCGC 60.732 50.000 0.00 0.00 38.76 4.70
3292 4533 1.064621 GCAACGCATGGATTCGCAT 59.935 52.632 0.00 0.00 0.00 4.73
3293 4534 1.204228 GCAACGCATGGATTCGCATG 61.204 55.000 0.00 9.49 0.00 4.06
3294 4535 0.593008 CAACGCATGGATTCGCATGG 60.593 55.000 13.54 8.46 0.00 3.66
3295 4536 0.747644 AACGCATGGATTCGCATGGA 60.748 50.000 13.54 0.00 0.00 3.41
3296 4537 0.535780 ACGCATGGATTCGCATGGAT 60.536 50.000 13.54 0.00 0.00 3.41
3298 4539 1.400629 CGCATGGATTCGCATGGATTC 60.401 52.381 13.54 0.00 0.00 2.52
3299 4540 1.400629 GCATGGATTCGCATGGATTCG 60.401 52.381 13.54 0.00 0.00 3.34
3300 4541 1.875514 CATGGATTCGCATGGATTCGT 59.124 47.619 0.00 0.00 0.00 3.85
3302 4543 1.134551 TGGATTCGCATGGATTCGTCA 60.135 47.619 0.00 0.00 0.00 4.35
3304 4545 2.354510 GGATTCGCATGGATTCGTCAAA 59.645 45.455 0.00 0.00 0.00 2.69
3305 4546 3.546815 GGATTCGCATGGATTCGTCAAAG 60.547 47.826 0.00 0.00 0.00 2.77
3306 4547 2.378445 TCGCATGGATTCGTCAAAGA 57.622 45.000 0.00 0.00 0.00 2.52
3307 4548 1.999735 TCGCATGGATTCGTCAAAGAC 59.000 47.619 0.00 0.00 0.00 3.01
3325 4566 8.809478 GTCAAAGACGAAATTAATACTCTCTCC 58.191 37.037 0.00 0.00 0.00 3.71
3326 4567 7.701078 TCAAAGACGAAATTAATACTCTCTCCG 59.299 37.037 0.00 0.00 0.00 4.63
3327 4568 6.074544 AGACGAAATTAATACTCTCTCCGG 57.925 41.667 0.00 0.00 0.00 5.14
3328 4569 4.618965 ACGAAATTAATACTCTCTCCGGC 58.381 43.478 0.00 0.00 0.00 6.13
3329 4570 3.988517 CGAAATTAATACTCTCTCCGGCC 59.011 47.826 0.00 0.00 0.00 6.13
3330 4571 4.316645 GAAATTAATACTCTCTCCGGCCC 58.683 47.826 0.00 0.00 0.00 5.80
3331 4572 2.769602 TTAATACTCTCTCCGGCCCT 57.230 50.000 0.00 0.00 0.00 5.19
3332 4573 3.889859 TTAATACTCTCTCCGGCCCTA 57.110 47.619 0.00 0.00 0.00 3.53
3333 4574 2.296073 AATACTCTCTCCGGCCCTAG 57.704 55.000 0.00 0.00 0.00 3.02
3334 4575 1.150872 ATACTCTCTCCGGCCCTAGT 58.849 55.000 0.00 0.09 0.00 2.57
3335 4576 0.183014 TACTCTCTCCGGCCCTAGTG 59.817 60.000 0.00 0.00 0.00 2.74
3336 4577 1.076632 CTCTCTCCGGCCCTAGTGT 60.077 63.158 0.00 0.00 0.00 3.55
3337 4578 1.076923 TCTCTCCGGCCCTAGTGTC 60.077 63.158 0.00 0.00 0.00 3.67
3338 4579 1.379977 CTCTCCGGCCCTAGTGTCA 60.380 63.158 0.00 0.00 0.00 3.58
3339 4580 0.970937 CTCTCCGGCCCTAGTGTCAA 60.971 60.000 0.00 0.00 0.00 3.18
3340 4581 0.543410 TCTCCGGCCCTAGTGTCAAA 60.543 55.000 0.00 0.00 0.00 2.69
3341 4582 0.323629 CTCCGGCCCTAGTGTCAAAA 59.676 55.000 0.00 0.00 0.00 2.44
3342 4583 0.766131 TCCGGCCCTAGTGTCAAAAA 59.234 50.000 0.00 0.00 0.00 1.94
3367 4608 6.770286 ATGTCTTACATTATGGGATGGAGT 57.230 37.500 0.00 0.00 34.67 3.85
3368 4609 7.872061 ATGTCTTACATTATGGGATGGAGTA 57.128 36.000 0.00 0.00 34.67 2.59
3369 4610 7.303182 TGTCTTACATTATGGGATGGAGTAG 57.697 40.000 0.00 0.00 0.00 2.57
3370 4611 6.844388 TGTCTTACATTATGGGATGGAGTAGT 59.156 38.462 0.00 0.00 0.00 2.73
3371 4612 8.008332 TGTCTTACATTATGGGATGGAGTAGTA 58.992 37.037 0.00 0.00 0.00 1.82
3372 4613 8.524487 GTCTTACATTATGGGATGGAGTAGTAG 58.476 40.741 0.00 0.00 0.00 2.57
3373 4614 8.453681 TCTTACATTATGGGATGGAGTAGTAGA 58.546 37.037 0.00 0.00 0.00 2.59
3374 4615 9.261035 CTTACATTATGGGATGGAGTAGTAGAT 57.739 37.037 0.00 0.00 0.00 1.98
3375 4616 7.487822 ACATTATGGGATGGAGTAGTAGATG 57.512 40.000 0.00 0.00 0.00 2.90
3376 4617 6.070538 ACATTATGGGATGGAGTAGTAGATGC 60.071 42.308 0.00 0.00 0.00 3.91
3377 4618 2.239400 TGGGATGGAGTAGTAGATGCG 58.761 52.381 0.00 0.00 0.00 4.73
3378 4619 2.158519 TGGGATGGAGTAGTAGATGCGA 60.159 50.000 0.00 0.00 0.00 5.10
3379 4620 2.490115 GGGATGGAGTAGTAGATGCGAG 59.510 54.545 0.00 0.00 0.00 5.03
3380 4621 2.094957 GGATGGAGTAGTAGATGCGAGC 60.095 54.545 0.00 0.00 0.00 5.03
3381 4622 2.052782 TGGAGTAGTAGATGCGAGCA 57.947 50.000 0.00 0.00 0.00 4.26
3382 4623 2.587522 TGGAGTAGTAGATGCGAGCAT 58.412 47.619 10.66 10.66 39.69 3.79
3397 4638 1.964223 GAGCATCAATACTCCCTCCGA 59.036 52.381 0.00 0.00 33.17 4.55
3398 4639 1.689273 AGCATCAATACTCCCTCCGAC 59.311 52.381 0.00 0.00 0.00 4.79
3447 4688 0.945813 ACGGAGTAGTAGATGCGAGC 59.054 55.000 3.63 0.00 41.94 5.03
3448 4689 0.945099 CGGAGTAGTAGATGCGAGCA 59.055 55.000 0.00 0.00 31.24 4.26
3449 4690 1.537638 CGGAGTAGTAGATGCGAGCAT 59.462 52.381 10.66 10.66 39.69 3.79
3450 4691 4.905416 ACGGAGTAGTAGATGCGAGCATC 61.905 52.174 25.62 25.62 46.41 3.91
3463 4704 4.592192 GCATCGGCGCAGAGGCTA 62.592 66.667 33.87 4.02 43.66 3.93
3464 4705 2.341543 CATCGGCGCAGAGGCTAT 59.658 61.111 16.84 0.00 44.22 2.97
3465 4706 1.586541 CATCGGCGCAGAGGCTATA 59.413 57.895 16.84 0.00 44.22 1.31
3466 4707 0.457509 CATCGGCGCAGAGGCTATAG 60.458 60.000 16.84 0.00 44.22 1.31
3467 4708 2.219325 ATCGGCGCAGAGGCTATAGC 62.219 60.000 16.78 16.78 44.22 2.97
3468 4709 2.737180 GGCGCAGAGGCTATAGCA 59.263 61.111 25.53 0.00 44.36 3.49
3469 4710 1.294780 GGCGCAGAGGCTATAGCAT 59.705 57.895 25.53 19.80 44.36 3.79
3470 4711 1.018226 GGCGCAGAGGCTATAGCATG 61.018 60.000 25.53 19.94 44.36 4.06
3471 4712 0.320247 GCGCAGAGGCTATAGCATGT 60.320 55.000 25.53 15.26 44.36 3.21
3472 4713 1.875576 GCGCAGAGGCTATAGCATGTT 60.876 52.381 25.53 7.09 44.36 2.71
3473 4714 1.797046 CGCAGAGGCTATAGCATGTTG 59.203 52.381 25.53 18.65 44.36 3.33
3474 4715 2.804572 CGCAGAGGCTATAGCATGTTGT 60.805 50.000 25.53 4.56 44.36 3.32
3475 4716 2.547211 GCAGAGGCTATAGCATGTTGTG 59.453 50.000 25.53 16.00 44.36 3.33
3476 4717 3.742327 GCAGAGGCTATAGCATGTTGTGA 60.742 47.826 25.53 0.00 44.36 3.58
3477 4718 4.445453 CAGAGGCTATAGCATGTTGTGAA 58.555 43.478 25.53 0.00 44.36 3.18
3478 4719 4.272018 CAGAGGCTATAGCATGTTGTGAAC 59.728 45.833 25.53 4.80 44.36 3.18
3479 4720 3.198068 AGGCTATAGCATGTTGTGAACG 58.802 45.455 25.53 0.00 44.36 3.95
3480 4721 2.287915 GGCTATAGCATGTTGTGAACGG 59.712 50.000 25.53 0.00 44.36 4.44
3481 4722 2.286418 GCTATAGCATGTTGTGAACGGC 60.286 50.000 20.01 0.00 41.59 5.68
3482 4723 2.113860 ATAGCATGTTGTGAACGGCT 57.886 45.000 9.48 9.48 43.84 5.52
3483 4724 1.438651 TAGCATGTTGTGAACGGCTC 58.561 50.000 8.24 0.00 41.67 4.70
3484 4725 0.534877 AGCATGTTGTGAACGGCTCA 60.535 50.000 0.00 0.00 39.47 4.26
3491 4732 3.744559 TGAACGGCTCACTTTGGC 58.255 55.556 0.00 0.00 0.00 4.52
3492 4733 1.148273 TGAACGGCTCACTTTGGCT 59.852 52.632 0.00 0.00 0.00 4.75
3493 4734 0.465460 TGAACGGCTCACTTTGGCTT 60.465 50.000 0.00 0.00 0.00 4.35
3494 4735 0.238553 GAACGGCTCACTTTGGCTTC 59.761 55.000 0.00 0.00 0.00 3.86
3495 4736 0.465460 AACGGCTCACTTTGGCTTCA 60.465 50.000 0.00 0.00 0.00 3.02
3496 4737 0.886490 ACGGCTCACTTTGGCTTCAG 60.886 55.000 0.00 0.00 0.00 3.02
3497 4738 0.603707 CGGCTCACTTTGGCTTCAGA 60.604 55.000 0.00 0.00 0.00 3.27
3498 4739 1.831580 GGCTCACTTTGGCTTCAGAT 58.168 50.000 0.00 0.00 0.00 2.90
3499 4740 2.165998 GGCTCACTTTGGCTTCAGATT 58.834 47.619 0.00 0.00 0.00 2.40
3500 4741 2.560105 GGCTCACTTTGGCTTCAGATTT 59.440 45.455 0.00 0.00 0.00 2.17
3501 4742 3.758554 GGCTCACTTTGGCTTCAGATTTA 59.241 43.478 0.00 0.00 0.00 1.40
3502 4743 4.142513 GGCTCACTTTGGCTTCAGATTTAG 60.143 45.833 0.00 0.00 0.00 1.85
3503 4744 4.673841 GCTCACTTTGGCTTCAGATTTAGC 60.674 45.833 0.00 0.00 36.66 3.09
3504 4745 4.397420 TCACTTTGGCTTCAGATTTAGCA 58.603 39.130 0.00 0.00 39.15 3.49
3505 4746 4.216257 TCACTTTGGCTTCAGATTTAGCAC 59.784 41.667 0.00 0.00 39.15 4.40
3506 4747 4.217118 CACTTTGGCTTCAGATTTAGCACT 59.783 41.667 0.00 0.00 39.15 4.40
3507 4748 5.412594 CACTTTGGCTTCAGATTTAGCACTA 59.587 40.000 0.00 0.00 39.15 2.74
3508 4749 6.094603 CACTTTGGCTTCAGATTTAGCACTAT 59.905 38.462 0.00 0.00 39.15 2.12
3509 4750 6.094603 ACTTTGGCTTCAGATTTAGCACTATG 59.905 38.462 0.00 0.00 39.15 2.23
3510 4751 5.357742 TGGCTTCAGATTTAGCACTATGA 57.642 39.130 0.00 0.00 39.15 2.15
3511 4752 5.744171 TGGCTTCAGATTTAGCACTATGAA 58.256 37.500 0.00 0.00 39.15 2.57
3512 4753 5.819379 TGGCTTCAGATTTAGCACTATGAAG 59.181 40.000 11.72 11.72 44.02 3.02
3513 4754 6.051717 GGCTTCAGATTTAGCACTATGAAGA 58.948 40.000 17.10 0.00 43.95 2.87
3514 4755 6.709846 GGCTTCAGATTTAGCACTATGAAGAT 59.290 38.462 17.10 0.00 43.95 2.40
3515 4756 7.228308 GGCTTCAGATTTAGCACTATGAAGATT 59.772 37.037 17.10 0.00 43.95 2.40
3516 4757 8.281893 GCTTCAGATTTAGCACTATGAAGATTC 58.718 37.037 17.10 2.94 43.95 2.52
3517 4758 9.322773 CTTCAGATTTAGCACTATGAAGATTCA 57.677 33.333 10.99 0.00 43.95 2.57
3519 4760 9.842775 TCAGATTTAGCACTATGAAGATTCATT 57.157 29.630 12.96 0.00 45.13 2.57
3524 4765 5.899299 AGCACTATGAAGATTCATTTTGGC 58.101 37.500 12.96 11.51 45.13 4.52
3525 4766 5.045872 GCACTATGAAGATTCATTTTGGCC 58.954 41.667 12.96 0.00 45.13 5.36
3526 4767 5.163478 GCACTATGAAGATTCATTTTGGCCT 60.163 40.000 12.96 0.00 45.13 5.19
3527 4768 6.501781 CACTATGAAGATTCATTTTGGCCTC 58.498 40.000 12.96 0.00 45.13 4.70
3528 4769 4.644103 ATGAAGATTCATTTTGGCCTCG 57.356 40.909 3.32 0.00 45.13 4.63
3529 4770 2.754552 TGAAGATTCATTTTGGCCTCGG 59.245 45.455 3.32 0.00 31.01 4.63
3530 4771 2.806945 AGATTCATTTTGGCCTCGGA 57.193 45.000 3.32 0.00 0.00 4.55
3531 4772 3.303351 AGATTCATTTTGGCCTCGGAT 57.697 42.857 3.32 0.00 0.00 4.18
3532 4773 3.635591 AGATTCATTTTGGCCTCGGATT 58.364 40.909 3.32 0.00 0.00 3.01
3533 4774 3.382546 AGATTCATTTTGGCCTCGGATTG 59.617 43.478 3.32 0.00 0.00 2.67
3534 4775 0.817013 TCATTTTGGCCTCGGATTGC 59.183 50.000 3.32 0.00 0.00 3.56
3535 4776 0.531657 CATTTTGGCCTCGGATTGCA 59.468 50.000 3.32 0.00 0.00 4.08
3536 4777 1.067000 CATTTTGGCCTCGGATTGCAA 60.067 47.619 3.32 0.00 0.00 4.08
3537 4778 0.602562 TTTTGGCCTCGGATTGCAAG 59.397 50.000 3.32 0.00 0.00 4.01
3538 4779 0.251121 TTTGGCCTCGGATTGCAAGA 60.251 50.000 3.32 0.00 0.00 3.02
3539 4780 0.034186 TTGGCCTCGGATTGCAAGAT 60.034 50.000 3.32 0.00 0.00 2.40
3540 4781 0.034186 TGGCCTCGGATTGCAAGATT 60.034 50.000 3.32 0.00 0.00 2.40
3541 4782 0.383231 GGCCTCGGATTGCAAGATTG 59.617 55.000 4.94 0.00 0.00 2.67
3542 4783 1.098050 GCCTCGGATTGCAAGATTGT 58.902 50.000 4.94 0.00 0.00 2.71
3543 4784 1.474077 GCCTCGGATTGCAAGATTGTT 59.526 47.619 4.94 0.00 0.00 2.83
3544 4785 2.682856 GCCTCGGATTGCAAGATTGTTA 59.317 45.455 4.94 0.00 0.00 2.41
3545 4786 3.316308 GCCTCGGATTGCAAGATTGTTAT 59.684 43.478 4.94 0.00 0.00 1.89
3546 4787 4.202050 GCCTCGGATTGCAAGATTGTTATT 60.202 41.667 4.94 0.00 0.00 1.40
3547 4788 5.276270 CCTCGGATTGCAAGATTGTTATTG 58.724 41.667 4.94 0.00 0.00 1.90
3548 4789 5.066375 CCTCGGATTGCAAGATTGTTATTGA 59.934 40.000 4.94 0.00 0.00 2.57
3549 4790 6.238842 CCTCGGATTGCAAGATTGTTATTGAT 60.239 38.462 4.94 0.00 0.00 2.57
3550 4791 6.497437 TCGGATTGCAAGATTGTTATTGATG 58.503 36.000 4.94 0.00 0.00 3.07
3551 4792 6.318396 TCGGATTGCAAGATTGTTATTGATGA 59.682 34.615 4.94 0.00 0.00 2.92
3552 4793 6.415867 CGGATTGCAAGATTGTTATTGATGAC 59.584 38.462 4.94 0.00 0.00 3.06
3553 4794 7.259882 GGATTGCAAGATTGTTATTGATGACA 58.740 34.615 4.94 0.00 0.00 3.58
3554 4795 7.221452 GGATTGCAAGATTGTTATTGATGACAC 59.779 37.037 4.94 0.00 0.00 3.67
3555 4796 5.953183 TGCAAGATTGTTATTGATGACACC 58.047 37.500 0.00 0.00 0.00 4.16
3556 4797 5.030295 GCAAGATTGTTATTGATGACACCG 58.970 41.667 0.00 0.00 0.00 4.94
3557 4798 4.882671 AGATTGTTATTGATGACACCGC 57.117 40.909 0.00 0.00 0.00 5.68
3558 4799 4.260985 AGATTGTTATTGATGACACCGCA 58.739 39.130 0.00 0.00 0.00 5.69
3559 4800 4.699735 AGATTGTTATTGATGACACCGCAA 59.300 37.500 0.00 0.00 0.00 4.85
3560 4801 4.837896 TTGTTATTGATGACACCGCAAA 57.162 36.364 0.00 0.00 0.00 3.68
3561 4802 4.418013 TGTTATTGATGACACCGCAAAG 57.582 40.909 0.00 0.00 0.00 2.77
3563 4804 2.198827 ATTGATGACACCGCAAAGGA 57.801 45.000 0.00 0.00 45.00 3.36
3564 4805 1.974265 TTGATGACACCGCAAAGGAA 58.026 45.000 0.00 0.00 45.00 3.36
3565 4806 1.522668 TGATGACACCGCAAAGGAAG 58.477 50.000 0.00 0.00 45.00 3.46
3566 4807 0.804989 GATGACACCGCAAAGGAAGG 59.195 55.000 0.00 0.00 45.00 3.46
3567 4808 0.400213 ATGACACCGCAAAGGAAGGA 59.600 50.000 0.00 0.00 45.00 3.36
3568 4809 0.534203 TGACACCGCAAAGGAAGGAC 60.534 55.000 0.00 0.00 45.00 3.85
3569 4810 0.250338 GACACCGCAAAGGAAGGACT 60.250 55.000 0.00 0.00 45.00 3.85
3570 4811 0.535102 ACACCGCAAAGGAAGGACTG 60.535 55.000 0.00 0.00 45.00 3.51
3571 4812 1.073199 ACCGCAAAGGAAGGACTGG 59.927 57.895 0.00 0.00 45.00 4.00
3572 4813 1.675641 CCGCAAAGGAAGGACTGGG 60.676 63.158 0.00 0.00 45.00 4.45
3573 4814 1.374947 CGCAAAGGAAGGACTGGGA 59.625 57.895 0.00 0.00 0.00 4.37
3574 4815 0.674895 CGCAAAGGAAGGACTGGGAG 60.675 60.000 0.00 0.00 0.00 4.30
3575 4816 0.962855 GCAAAGGAAGGACTGGGAGC 60.963 60.000 0.00 0.00 0.00 4.70
3576 4817 0.695347 CAAAGGAAGGACTGGGAGCT 59.305 55.000 0.00 0.00 0.00 4.09
3577 4818 0.988063 AAAGGAAGGACTGGGAGCTC 59.012 55.000 4.71 4.71 0.00 4.09
3578 4819 0.178891 AAGGAAGGACTGGGAGCTCA 60.179 55.000 17.19 0.00 0.00 4.26
3579 4820 0.043940 AGGAAGGACTGGGAGCTCAT 59.956 55.000 17.19 0.00 0.00 2.90
3580 4821 0.179936 GGAAGGACTGGGAGCTCATG 59.820 60.000 17.19 7.17 0.00 3.07
3581 4822 0.463474 GAAGGACTGGGAGCTCATGC 60.463 60.000 17.19 2.99 40.05 4.06
3582 4823 1.203441 AAGGACTGGGAGCTCATGCA 61.203 55.000 17.19 0.00 42.74 3.96
3583 4824 0.987081 AGGACTGGGAGCTCATGCAT 60.987 55.000 17.19 0.00 42.74 3.96
3584 4825 0.534652 GGACTGGGAGCTCATGCATC 60.535 60.000 17.19 5.91 42.74 3.91
3585 4826 0.469070 GACTGGGAGCTCATGCATCT 59.531 55.000 17.19 0.00 42.74 2.90
3586 4827 1.690893 GACTGGGAGCTCATGCATCTA 59.309 52.381 17.19 0.00 42.74 1.98
3587 4828 2.302445 GACTGGGAGCTCATGCATCTAT 59.698 50.000 17.19 0.00 42.74 1.98
3588 4829 2.302445 ACTGGGAGCTCATGCATCTATC 59.698 50.000 17.19 0.00 42.74 2.08
3589 4830 2.302157 CTGGGAGCTCATGCATCTATCA 59.698 50.000 17.19 0.00 42.74 2.15
3590 4831 2.038164 TGGGAGCTCATGCATCTATCAC 59.962 50.000 17.19 0.00 42.74 3.06
3591 4832 2.614987 GGGAGCTCATGCATCTATCACC 60.615 54.545 17.19 0.00 42.74 4.02
3592 4833 2.038164 GGAGCTCATGCATCTATCACCA 59.962 50.000 17.19 0.00 42.74 4.17
3593 4834 3.495629 GGAGCTCATGCATCTATCACCAA 60.496 47.826 17.19 0.00 42.74 3.67
3594 4835 3.741249 AGCTCATGCATCTATCACCAAG 58.259 45.455 0.00 0.00 42.74 3.61
3595 4836 2.812591 GCTCATGCATCTATCACCAAGG 59.187 50.000 0.00 0.00 39.41 3.61
3596 4837 3.495629 GCTCATGCATCTATCACCAAGGA 60.496 47.826 0.00 0.00 39.41 3.36
3597 4838 4.316645 CTCATGCATCTATCACCAAGGAG 58.683 47.826 0.00 0.00 0.00 3.69
3598 4839 3.969312 TCATGCATCTATCACCAAGGAGA 59.031 43.478 0.00 0.00 0.00 3.71
3599 4840 4.596212 TCATGCATCTATCACCAAGGAGAT 59.404 41.667 0.00 4.49 0.00 2.75
3600 4841 4.613925 TGCATCTATCACCAAGGAGATC 57.386 45.455 2.20 0.00 0.00 2.75
3601 4842 3.006217 TGCATCTATCACCAAGGAGATCG 59.994 47.826 2.20 0.00 0.00 3.69
3602 4843 3.006323 GCATCTATCACCAAGGAGATCGT 59.994 47.826 2.20 0.00 0.00 3.73
3603 4844 4.218635 GCATCTATCACCAAGGAGATCGTA 59.781 45.833 2.20 0.00 0.00 3.43
3604 4845 5.279006 GCATCTATCACCAAGGAGATCGTAA 60.279 44.000 2.20 0.00 0.00 3.18
3605 4846 6.385843 CATCTATCACCAAGGAGATCGTAAG 58.614 44.000 2.20 0.00 0.00 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.080099 GGTAGCATGTATATTTGCAAGACATG 58.920 38.462 25.80 25.80 46.53 3.21
8 9 6.207417 GGGTAGCATGTATATTTGCAAGACAT 59.793 38.462 0.00 5.94 41.35 3.06
9 10 5.530915 GGGTAGCATGTATATTTGCAAGACA 59.469 40.000 0.00 3.71 41.35 3.41
10 11 5.530915 TGGGTAGCATGTATATTTGCAAGAC 59.469 40.000 0.00 0.00 41.35 3.01
11 12 5.689835 TGGGTAGCATGTATATTTGCAAGA 58.310 37.500 0.00 0.00 41.35 3.02
12 13 6.389830 TTGGGTAGCATGTATATTTGCAAG 57.610 37.500 0.00 0.00 41.35 4.01
13 14 6.975196 ATTGGGTAGCATGTATATTTGCAA 57.025 33.333 0.00 0.00 41.35 4.08
14 15 7.122501 CCATATTGGGTAGCATGTATATTTGCA 59.877 37.037 11.15 0.00 36.15 4.08
15 16 7.122650 ACCATATTGGGTAGCATGTATATTTGC 59.877 37.037 0.00 2.51 43.37 3.68
16 17 8.579850 ACCATATTGGGTAGCATGTATATTTG 57.420 34.615 0.00 0.00 43.37 2.32
17 18 8.390143 TGACCATATTGGGTAGCATGTATATTT 58.610 33.333 0.00 0.00 43.37 1.40
18 19 7.927788 TGACCATATTGGGTAGCATGTATATT 58.072 34.615 0.00 0.00 43.37 1.28
19 20 7.509236 TGACCATATTGGGTAGCATGTATAT 57.491 36.000 0.00 0.00 43.37 0.86
20 21 6.943899 TGACCATATTGGGTAGCATGTATA 57.056 37.500 0.00 0.00 43.37 1.47
21 22 5.841267 TGACCATATTGGGTAGCATGTAT 57.159 39.130 0.00 0.00 43.37 2.29
22 23 5.841267 ATGACCATATTGGGTAGCATGTA 57.159 39.130 0.00 0.00 43.37 2.29
23 24 4.729552 ATGACCATATTGGGTAGCATGT 57.270 40.909 0.00 0.00 43.37 3.21
24 25 6.053632 TCTATGACCATATTGGGTAGCATG 57.946 41.667 0.00 0.00 43.37 4.06
25 26 5.190528 CCTCTATGACCATATTGGGTAGCAT 59.809 44.000 0.00 0.00 43.37 3.79
26 27 4.532126 CCTCTATGACCATATTGGGTAGCA 59.468 45.833 0.00 0.00 43.37 3.49
27 28 4.777896 TCCTCTATGACCATATTGGGTAGC 59.222 45.833 0.00 0.00 43.37 3.58
28 29 5.105716 CGTCCTCTATGACCATATTGGGTAG 60.106 48.000 0.00 0.00 43.37 3.18
29 30 4.770531 CGTCCTCTATGACCATATTGGGTA 59.229 45.833 0.00 0.00 43.37 3.69
30 31 3.578716 CGTCCTCTATGACCATATTGGGT 59.421 47.826 0.00 0.00 43.37 4.51
31 32 3.832490 TCGTCCTCTATGACCATATTGGG 59.168 47.826 0.00 0.00 43.37 4.12
32 33 4.767409 TCTCGTCCTCTATGACCATATTGG 59.233 45.833 0.00 0.00 45.02 3.16
33 34 5.105957 CCTCTCGTCCTCTATGACCATATTG 60.106 48.000 0.00 0.00 31.35 1.90
40 41 2.642154 TCCCTCTCGTCCTCTATGAC 57.358 55.000 0.00 0.00 0.00 3.06
51 52 0.820871 GGCCTAGCATATCCCTCTCG 59.179 60.000 0.00 0.00 0.00 4.04
57 58 1.771255 CCCATAGGGCCTAGCATATCC 59.229 57.143 19.74 0.00 35.35 2.59
72 73 2.016604 GCGAGGTTGTCAATGCCCATA 61.017 52.381 0.00 0.00 0.00 2.74
77 78 0.109597 CTTGGCGAGGTTGTCAATGC 60.110 55.000 0.00 0.00 32.18 3.56
95 105 1.490490 TGGTTGTGTTCTCTTGAGGCT 59.510 47.619 0.00 0.00 0.00 4.58
101 111 4.202050 GCTTGAATGTGGTTGTGTTCTCTT 60.202 41.667 0.00 0.00 0.00 2.85
102 112 3.316308 GCTTGAATGTGGTTGTGTTCTCT 59.684 43.478 0.00 0.00 0.00 3.10
104 114 2.362077 GGCTTGAATGTGGTTGTGTTCT 59.638 45.455 0.00 0.00 0.00 3.01
107 117 2.071778 AGGCTTGAATGTGGTTGTGT 57.928 45.000 0.00 0.00 0.00 3.72
113 123 3.553508 CCTCAACAAAGGCTTGAATGTGG 60.554 47.826 0.00 6.80 36.33 4.17
115 125 3.068590 CACCTCAACAAAGGCTTGAATGT 59.931 43.478 0.00 0.00 40.34 2.71
116 126 3.068590 ACACCTCAACAAAGGCTTGAATG 59.931 43.478 0.00 0.00 40.34 2.67
117 127 3.299503 ACACCTCAACAAAGGCTTGAAT 58.700 40.909 0.00 0.00 40.34 2.57
118 128 2.733956 ACACCTCAACAAAGGCTTGAA 58.266 42.857 0.00 0.00 40.34 2.69
125 136 4.380531 TCTTCTGCTACACCTCAACAAAG 58.619 43.478 0.00 0.00 0.00 2.77
136 147 4.322273 CCATGTCTTCACTCTTCTGCTACA 60.322 45.833 0.00 0.00 0.00 2.74
137 148 4.180057 CCATGTCTTCACTCTTCTGCTAC 58.820 47.826 0.00 0.00 0.00 3.58
141 152 2.027377 AGGCCATGTCTTCACTCTTCTG 60.027 50.000 5.01 0.00 0.00 3.02
142 153 2.235898 GAGGCCATGTCTTCACTCTTCT 59.764 50.000 5.01 0.00 0.00 2.85
148 159 2.012673 GATGTGAGGCCATGTCTTCAC 58.987 52.381 11.65 11.65 41.64 3.18
174 185 4.081476 TGCTCAATGAGATCCTTCTTTCGA 60.081 41.667 15.38 0.00 30.30 3.71
201 212 1.409251 ATCTCCTGCCTAGCTGCCAG 61.409 60.000 0.00 0.00 0.00 4.85
203 214 0.607620 CTATCTCCTGCCTAGCTGCC 59.392 60.000 0.00 0.00 0.00 4.85
213 224 8.954950 AATCAATTTAGACACACTATCTCCTG 57.045 34.615 0.00 0.00 0.00 3.86
276 287 7.985634 ATCCAAATGTAACAAATAATGCGAC 57.014 32.000 0.00 0.00 0.00 5.19
382 393 9.698309 CTATCATTGGTCATACGTTCTTTCTAT 57.302 33.333 0.00 0.00 0.00 1.98
412 423 5.128827 TCGTATTTTTCCTATGAGCAGGACT 59.871 40.000 0.00 0.00 44.56 3.85
414 425 5.607939 TCGTATTTTTCCTATGAGCAGGA 57.392 39.130 0.00 0.00 43.17 3.86
418 429 4.023963 GGCCTTCGTATTTTTCCTATGAGC 60.024 45.833 0.00 0.00 0.00 4.26
421 432 7.687941 ATATGGCCTTCGTATTTTTCCTATG 57.312 36.000 3.32 0.00 0.00 2.23
422 433 8.706322 AAATATGGCCTTCGTATTTTTCCTAT 57.294 30.769 3.32 0.00 42.01 2.57
423 434 9.802039 ATAAATATGGCCTTCGTATTTTTCCTA 57.198 29.630 3.32 0.00 42.01 2.94
425 436 8.573035 TCATAAATATGGCCTTCGTATTTTTCC 58.427 33.333 3.32 0.00 42.01 3.13
429 442 6.932400 TCGTCATAAATATGGCCTTCGTATTT 59.068 34.615 3.32 11.77 44.90 1.40
434 447 4.307432 AGTCGTCATAAATATGGCCTTCG 58.693 43.478 3.32 0.00 34.93 3.79
445 458 4.032445 GCGCAAATACAGAGTCGTCATAAA 59.968 41.667 0.30 0.00 0.00 1.40
452 465 1.067693 TGTGCGCAAATACAGAGTCG 58.932 50.000 14.00 0.00 0.00 4.18
516 529 3.556775 GTCGCTGGTTTAGTACAACAACA 59.443 43.478 0.00 0.00 0.00 3.33
517 530 3.556775 TGTCGCTGGTTTAGTACAACAAC 59.443 43.478 0.00 0.00 0.00 3.32
531 544 8.716646 TCCATATACATATTAATTGTCGCTGG 57.283 34.615 0.00 6.29 0.00 4.85
604 620 3.007398 AGAAGGACTGCCTCTAGTTGTTG 59.993 47.826 0.00 0.00 46.28 3.33
607 623 3.096092 AGAGAAGGACTGCCTCTAGTTG 58.904 50.000 0.00 0.00 46.28 3.16
615 631 3.881089 GACTAGACTAGAGAAGGACTGCC 59.119 52.174 16.55 0.00 0.00 4.85
616 632 4.777463 AGACTAGACTAGAGAAGGACTGC 58.223 47.826 16.55 0.00 0.00 4.40
630 646 9.752961 ACTTTTGTCTTTTTCTAGAGACTAGAC 57.247 33.333 13.72 13.72 42.13 2.59
631 647 9.751542 CACTTTTGTCTTTTTCTAGAGACTAGA 57.248 33.333 10.26 4.64 42.13 2.43
632 648 8.983724 CCACTTTTGTCTTTTTCTAGAGACTAG 58.016 37.037 10.26 0.00 42.13 2.57
634 650 7.496263 GTCCACTTTTGTCTTTTTCTAGAGACT 59.504 37.037 10.26 0.00 42.13 3.24
635 651 7.496263 AGTCCACTTTTGTCTTTTTCTAGAGAC 59.504 37.037 3.49 3.49 42.01 3.36
656 691 5.884255 GACCGAAGTCACTGGATAAGTCCA 61.884 50.000 0.00 0.00 46.27 4.02
689 728 1.131638 GGTAGCTGGGTGATGATGGA 58.868 55.000 0.00 0.00 0.00 3.41
731 770 4.722700 ACACATGGGCCTGGCGAC 62.723 66.667 13.40 8.85 0.00 5.19
812 851 3.181474 CGTCCCAGAAGAAACCCTAGATC 60.181 52.174 0.00 0.00 0.00 2.75
883 923 4.452733 GGTTCGTGGAGGAGGCGG 62.453 72.222 0.00 0.00 0.00 6.13
884 924 3.358076 GAGGTTCGTGGAGGAGGCG 62.358 68.421 0.00 0.00 0.00 5.52
885 925 2.579738 GAGGTTCGTGGAGGAGGC 59.420 66.667 0.00 0.00 0.00 4.70
927 991 3.279434 GAATAATCAAACAGGAGCCCGT 58.721 45.455 0.00 0.00 0.00 5.28
963 1027 4.492160 TGAGACGGACGCGATGGC 62.492 66.667 15.93 3.41 0.00 4.40
968 1032 1.226323 CTAACCTGAGACGGACGCG 60.226 63.158 3.53 3.53 0.00 6.01
972 1036 0.039180 TCCTGCTAACCTGAGACGGA 59.961 55.000 0.00 0.00 0.00 4.69
1112 1179 0.252284 CTAGGACAGTGGAGGTGGGT 60.252 60.000 0.00 0.00 0.00 4.51
1144 1212 3.319122 AGACCACATGGCAGAAAAAGAAC 59.681 43.478 0.00 0.00 39.32 3.01
1199 1271 4.977963 CCTAAACAACAAGCACAAGTCATG 59.022 41.667 0.00 0.00 0.00 3.07
1207 1279 5.768317 TGAATAAGCCTAAACAACAAGCAC 58.232 37.500 0.00 0.00 0.00 4.40
1235 1367 3.820467 CTCACCAGCCTGAACACAATTTA 59.180 43.478 0.00 0.00 0.00 1.40
1273 1460 3.119209 TCAAACAAGCACAAATCACTGCA 60.119 39.130 0.00 0.00 35.73 4.41
1364 1552 5.663795 ATCAAACTATGCTACAATGCTCG 57.336 39.130 0.00 0.00 0.00 5.03
1429 1617 6.405731 GCTTTCATGTAATTGCAAGATACCCA 60.406 38.462 17.69 5.64 0.00 4.51
1473 1666 7.067494 AGGCTGAACTCAATATGTACATTTTCC 59.933 37.037 14.77 7.25 0.00 3.13
1501 1704 3.691609 GGAGTTCCAAGAATTACAGGCAG 59.308 47.826 0.00 0.00 35.64 4.85
1525 1768 1.748122 CCTGCAGGGCTAGCAACTG 60.748 63.158 26.14 25.76 42.17 3.16
1641 2607 9.890629 AATACAACATGTCTGTATCAGTAACAT 57.109 29.630 22.60 10.41 38.70 2.71
1642 2608 9.719355 AAATACAACATGTCTGTATCAGTAACA 57.281 29.630 22.60 5.92 38.70 2.41
1785 2917 8.532819 TGTATTAGTTTCCCACAAGTTTTGTTT 58.467 29.630 0.00 0.00 43.23 2.83
1853 2994 9.772973 ACAAACTGAATAGACATGTACAAGTTA 57.227 29.630 5.05 1.18 0.00 2.24
1854 2995 8.677148 ACAAACTGAATAGACATGTACAAGTT 57.323 30.769 5.05 1.80 0.00 2.66
1855 2996 9.944376 ATACAAACTGAATAGACATGTACAAGT 57.056 29.630 2.85 2.85 0.00 3.16
1897 3040 7.820872 CCTTTCTGCAAAAATTGTCCAAGATAT 59.179 33.333 0.00 0.00 0.00 1.63
1898 3041 7.153985 CCTTTCTGCAAAAATTGTCCAAGATA 58.846 34.615 0.00 0.00 0.00 1.98
2202 3349 7.732025 TCTTTGTAACCAAGTCATCTAGAACA 58.268 34.615 0.00 0.00 0.00 3.18
2203 3350 8.779354 ATCTTTGTAACCAAGTCATCTAGAAC 57.221 34.615 0.00 0.00 0.00 3.01
2205 3352 8.035394 GTGATCTTTGTAACCAAGTCATCTAGA 58.965 37.037 0.00 0.00 0.00 2.43
2206 3353 8.037758 AGTGATCTTTGTAACCAAGTCATCTAG 58.962 37.037 0.00 0.00 0.00 2.43
2207 3354 7.907389 AGTGATCTTTGTAACCAAGTCATCTA 58.093 34.615 0.00 0.00 0.00 1.98
2208 3355 6.773638 AGTGATCTTTGTAACCAAGTCATCT 58.226 36.000 0.00 0.00 0.00 2.90
2209 3356 7.819900 ACTAGTGATCTTTGTAACCAAGTCATC 59.180 37.037 0.00 0.00 0.00 2.92
2210 3357 7.604164 CACTAGTGATCTTTGTAACCAAGTCAT 59.396 37.037 18.45 0.00 0.00 3.06
2211 3358 6.929049 CACTAGTGATCTTTGTAACCAAGTCA 59.071 38.462 18.45 0.00 0.00 3.41
2212 3359 6.128526 GCACTAGTGATCTTTGTAACCAAGTC 60.129 42.308 27.08 0.00 0.00 3.01
2213 3360 5.701290 GCACTAGTGATCTTTGTAACCAAGT 59.299 40.000 27.08 0.00 0.00 3.16
2214 3361 5.700832 TGCACTAGTGATCTTTGTAACCAAG 59.299 40.000 27.08 0.00 0.00 3.61
2215 3362 5.616270 TGCACTAGTGATCTTTGTAACCAA 58.384 37.500 27.08 0.00 0.00 3.67
2216 3363 5.222079 TGCACTAGTGATCTTTGTAACCA 57.778 39.130 27.08 7.15 0.00 3.67
2217 3364 7.843490 TTATGCACTAGTGATCTTTGTAACC 57.157 36.000 27.08 4.51 0.00 2.85
2218 3365 9.922305 GAATTATGCACTAGTGATCTTTGTAAC 57.078 33.333 27.08 5.03 0.00 2.50
2219 3366 8.817100 CGAATTATGCACTAGTGATCTTTGTAA 58.183 33.333 27.08 12.52 0.00 2.41
2220 3367 7.979537 ACGAATTATGCACTAGTGATCTTTGTA 59.020 33.333 27.08 4.89 0.00 2.41
2221 3368 6.818644 ACGAATTATGCACTAGTGATCTTTGT 59.181 34.615 27.08 16.12 0.00 2.83
2222 3369 7.239166 ACGAATTATGCACTAGTGATCTTTG 57.761 36.000 27.08 15.57 0.00 2.77
2223 3370 6.480320 GGACGAATTATGCACTAGTGATCTTT 59.520 38.462 27.08 11.87 0.00 2.52
2224 3371 5.986135 GGACGAATTATGCACTAGTGATCTT 59.014 40.000 27.08 11.03 0.00 2.40
2225 3372 5.303078 AGGACGAATTATGCACTAGTGATCT 59.697 40.000 27.08 11.70 0.00 2.75
2226 3373 5.533482 AGGACGAATTATGCACTAGTGATC 58.467 41.667 27.08 10.22 0.00 2.92
2227 3374 5.303078 AGAGGACGAATTATGCACTAGTGAT 59.697 40.000 27.08 17.63 0.00 3.06
2228 3375 4.645136 AGAGGACGAATTATGCACTAGTGA 59.355 41.667 27.08 11.86 0.00 3.41
2229 3376 4.938080 AGAGGACGAATTATGCACTAGTG 58.062 43.478 18.93 18.93 0.00 2.74
2230 3377 5.599999 AAGAGGACGAATTATGCACTAGT 57.400 39.130 0.00 0.00 0.00 2.57
2231 3378 6.504398 TGTAAGAGGACGAATTATGCACTAG 58.496 40.000 0.00 0.00 0.00 2.57
2232 3379 6.459670 TGTAAGAGGACGAATTATGCACTA 57.540 37.500 0.00 0.00 0.00 2.74
2233 3380 5.339008 TGTAAGAGGACGAATTATGCACT 57.661 39.130 0.00 0.00 0.00 4.40
2234 3381 5.753438 TGATGTAAGAGGACGAATTATGCAC 59.247 40.000 0.00 0.00 0.00 4.57
2235 3382 5.912892 TGATGTAAGAGGACGAATTATGCA 58.087 37.500 0.00 0.00 0.00 3.96
2236 3383 6.646653 TCATGATGTAAGAGGACGAATTATGC 59.353 38.462 0.00 0.00 0.00 3.14
2237 3384 7.869937 AGTCATGATGTAAGAGGACGAATTATG 59.130 37.037 0.00 0.00 0.00 1.90
2262 3437 6.045318 ACTAGTGATCAACGGAATTCATCAG 58.955 40.000 7.93 0.00 0.00 2.90
2272 3447 5.856126 TTTAAGCAACTAGTGATCAACGG 57.144 39.130 0.00 0.00 0.00 4.44
2273 3448 6.831769 ACATTTAAGCAACTAGTGATCAACG 58.168 36.000 0.00 0.00 0.00 4.10
2373 3572 2.635427 TGTCTACAGCACCATAACACCA 59.365 45.455 0.00 0.00 0.00 4.17
2374 3573 3.328382 TGTCTACAGCACCATAACACC 57.672 47.619 0.00 0.00 0.00 4.16
2433 3633 9.906111 GTCAAGCAAAAGAAACAATTAAAGAAG 57.094 29.630 0.00 0.00 0.00 2.85
2540 3741 2.538437 CAGGAGAGAACAATGAGCTCG 58.462 52.381 9.64 0.00 33.98 5.03
2587 3788 5.470845 AAATCTATTTCTTCTTGTCCGCG 57.529 39.130 0.00 0.00 0.00 6.46
2640 3841 1.309499 TGGAAATACGGGGCAAAGCG 61.309 55.000 0.00 0.00 0.00 4.68
2694 3895 3.595173 AGTGCAATGTGCTACATTCGTA 58.405 40.909 10.38 5.44 44.91 3.43
2705 3906 4.036027 ACTCTGAACTTGAAGTGCAATGTG 59.964 41.667 7.52 0.81 32.29 3.21
2766 3967 6.093909 CAGAATGCAATGTACTACCATGTCAA 59.906 38.462 0.00 0.00 0.00 3.18
2851 4055 5.551233 TCTGTGAAGAAAAGGTGATAGGTG 58.449 41.667 0.00 0.00 0.00 4.00
2881 4085 9.712359 GATACAAAAGTAAGAAAACAAAGACGT 57.288 29.630 0.00 0.00 0.00 4.34
2908 4112 2.232208 CCATCGCCATACAGATAGCTCA 59.768 50.000 0.00 0.00 0.00 4.26
2931 4135 6.214615 TCAATAAGGTCTGGGAAGAACATACA 59.785 38.462 0.00 0.00 0.00 2.29
3051 4266 5.680619 CATTACTAAATGGGCTGGTAGACA 58.319 41.667 0.00 0.00 39.10 3.41
3085 4300 3.782244 GCTGCGCACACTTCTCCG 61.782 66.667 5.66 0.00 0.00 4.63
3100 4315 2.557924 TGATTTTGTTTCCAGCGATGCT 59.442 40.909 0.00 0.00 40.77 3.79
3168 4409 4.082733 TGAGTGTAAACTCCTCGTCTGATG 60.083 45.833 10.66 0.00 35.97 3.07
3172 4413 3.193691 CCATGAGTGTAAACTCCTCGTCT 59.806 47.826 10.66 0.00 35.97 4.18
3203 4444 1.055040 GCTGACCAGATAGCTCCCAT 58.945 55.000 0.47 0.00 36.99 4.00
3207 4448 0.249238 CCGTGCTGACCAGATAGCTC 60.249 60.000 0.47 0.00 40.52 4.09
3279 4520 1.400629 CGAATCCATGCGAATCCATGC 60.401 52.381 6.29 0.00 40.92 4.06
3299 4540 8.809478 GGAGAGAGTATTAATTTCGTCTTTGAC 58.191 37.037 0.00 0.00 0.00 3.18
3300 4541 7.701078 CGGAGAGAGTATTAATTTCGTCTTTGA 59.299 37.037 0.00 0.00 0.00 2.69
3302 4543 6.979238 CCGGAGAGAGTATTAATTTCGTCTTT 59.021 38.462 0.00 0.00 0.00 2.52
3304 4545 5.507650 GCCGGAGAGAGTATTAATTTCGTCT 60.508 44.000 5.05 0.00 0.00 4.18
3305 4546 4.680567 GCCGGAGAGAGTATTAATTTCGTC 59.319 45.833 5.05 0.00 0.00 4.20
3306 4547 4.501058 GGCCGGAGAGAGTATTAATTTCGT 60.501 45.833 5.05 0.00 0.00 3.85
3307 4548 3.988517 GGCCGGAGAGAGTATTAATTTCG 59.011 47.826 5.05 0.00 0.00 3.46
3309 4550 3.974642 AGGGCCGGAGAGAGTATTAATTT 59.025 43.478 5.05 0.00 0.00 1.82
3310 4551 3.588569 AGGGCCGGAGAGAGTATTAATT 58.411 45.455 5.05 0.00 0.00 1.40
3311 4552 3.261818 AGGGCCGGAGAGAGTATTAAT 57.738 47.619 5.05 0.00 0.00 1.40
3312 4553 2.769602 AGGGCCGGAGAGAGTATTAA 57.230 50.000 5.05 0.00 0.00 1.40
3313 4554 2.715336 ACTAGGGCCGGAGAGAGTATTA 59.285 50.000 5.05 0.00 0.00 0.98
3314 4555 1.499870 ACTAGGGCCGGAGAGAGTATT 59.500 52.381 5.05 0.00 0.00 1.89
3315 4556 1.150872 ACTAGGGCCGGAGAGAGTAT 58.849 55.000 5.05 0.00 0.00 2.12
3316 4557 0.183014 CACTAGGGCCGGAGAGAGTA 59.817 60.000 5.05 0.00 0.00 2.59
3317 4558 1.076632 CACTAGGGCCGGAGAGAGT 60.077 63.158 5.05 0.00 0.00 3.24
3318 4559 1.076632 ACACTAGGGCCGGAGAGAG 60.077 63.158 5.05 0.00 0.00 3.20
3319 4560 1.076923 GACACTAGGGCCGGAGAGA 60.077 63.158 5.05 0.00 0.00 3.10
3320 4561 0.970937 TTGACACTAGGGCCGGAGAG 60.971 60.000 5.05 9.46 0.00 3.20
3321 4562 0.543410 TTTGACACTAGGGCCGGAGA 60.543 55.000 5.05 0.00 0.00 3.71
3322 4563 0.323629 TTTTGACACTAGGGCCGGAG 59.676 55.000 5.05 1.82 0.00 4.63
3323 4564 0.766131 TTTTTGACACTAGGGCCGGA 59.234 50.000 5.05 0.00 0.00 5.14
3324 4565 3.332706 TTTTTGACACTAGGGCCGG 57.667 52.632 0.00 0.00 0.00 6.13
3340 4581 8.837099 TCCATCCCATAATGTAAGACATTTTT 57.163 30.769 9.92 0.00 45.80 1.94
3341 4582 8.061304 ACTCCATCCCATAATGTAAGACATTTT 58.939 33.333 9.92 0.33 45.80 1.82
3342 4583 7.586349 ACTCCATCCCATAATGTAAGACATTT 58.414 34.615 9.92 0.00 45.80 2.32
3344 4585 6.770286 ACTCCATCCCATAATGTAAGACAT 57.230 37.500 0.00 0.00 41.31 3.06
3345 4586 6.844388 ACTACTCCATCCCATAATGTAAGACA 59.156 38.462 0.00 0.00 0.00 3.41
3346 4587 7.304497 ACTACTCCATCCCATAATGTAAGAC 57.696 40.000 0.00 0.00 0.00 3.01
3347 4588 8.453681 TCTACTACTCCATCCCATAATGTAAGA 58.546 37.037 0.00 0.00 0.00 2.10
3348 4589 8.651589 TCTACTACTCCATCCCATAATGTAAG 57.348 38.462 0.00 0.00 0.00 2.34
3349 4590 9.035890 CATCTACTACTCCATCCCATAATGTAA 57.964 37.037 0.00 0.00 0.00 2.41
3350 4591 7.124298 GCATCTACTACTCCATCCCATAATGTA 59.876 40.741 0.00 0.00 0.00 2.29
3351 4592 6.070538 GCATCTACTACTCCATCCCATAATGT 60.071 42.308 0.00 0.00 0.00 2.71
3352 4593 6.344500 GCATCTACTACTCCATCCCATAATG 58.656 44.000 0.00 0.00 0.00 1.90
3353 4594 5.127845 CGCATCTACTACTCCATCCCATAAT 59.872 44.000 0.00 0.00 0.00 1.28
3354 4595 4.462834 CGCATCTACTACTCCATCCCATAA 59.537 45.833 0.00 0.00 0.00 1.90
3355 4596 4.017126 CGCATCTACTACTCCATCCCATA 58.983 47.826 0.00 0.00 0.00 2.74
3356 4597 2.828520 CGCATCTACTACTCCATCCCAT 59.171 50.000 0.00 0.00 0.00 4.00
3357 4598 2.158519 TCGCATCTACTACTCCATCCCA 60.159 50.000 0.00 0.00 0.00 4.37
3358 4599 2.490115 CTCGCATCTACTACTCCATCCC 59.510 54.545 0.00 0.00 0.00 3.85
3359 4600 2.094957 GCTCGCATCTACTACTCCATCC 60.095 54.545 0.00 0.00 0.00 3.51
3360 4601 2.554462 TGCTCGCATCTACTACTCCATC 59.446 50.000 0.00 0.00 0.00 3.51
3361 4602 2.587522 TGCTCGCATCTACTACTCCAT 58.412 47.619 0.00 0.00 0.00 3.41
3362 4603 2.052782 TGCTCGCATCTACTACTCCA 57.947 50.000 0.00 0.00 0.00 3.86
3363 4604 3.210358 GATGCTCGCATCTACTACTCC 57.790 52.381 21.28 0.00 46.67 3.85
3373 4614 2.175878 GGGAGTATTGATGCTCGCAT 57.824 50.000 17.07 3.70 46.47 4.73
3374 4615 3.686622 GGGAGTATTGATGCTCGCA 57.313 52.632 17.07 0.00 46.47 5.10
3376 4617 1.336332 CGGAGGGAGTATTGATGCTCG 60.336 57.143 3.53 0.00 39.96 5.03
3377 4618 1.964223 TCGGAGGGAGTATTGATGCTC 59.036 52.381 1.01 1.01 38.58 4.26
3378 4619 1.689273 GTCGGAGGGAGTATTGATGCT 59.311 52.381 0.00 0.00 0.00 3.79
3379 4620 1.270358 GGTCGGAGGGAGTATTGATGC 60.270 57.143 0.00 0.00 0.00 3.91
3380 4621 1.344763 GGGTCGGAGGGAGTATTGATG 59.655 57.143 0.00 0.00 0.00 3.07
3381 4622 1.220750 AGGGTCGGAGGGAGTATTGAT 59.779 52.381 0.00 0.00 0.00 2.57
3382 4623 0.635009 AGGGTCGGAGGGAGTATTGA 59.365 55.000 0.00 0.00 0.00 2.57
3383 4624 2.240279 CTAGGGTCGGAGGGAGTATTG 58.760 57.143 0.00 0.00 0.00 1.90
3384 4625 1.858246 ACTAGGGTCGGAGGGAGTATT 59.142 52.381 0.00 0.00 0.00 1.89
3417 4658 6.692849 TCTACTACTCCGTCCCATATAAGA 57.307 41.667 0.00 0.00 0.00 2.10
3418 4659 6.183360 GCATCTACTACTCCGTCCCATATAAG 60.183 46.154 0.00 0.00 0.00 1.73
3419 4660 5.651139 GCATCTACTACTCCGTCCCATATAA 59.349 44.000 0.00 0.00 0.00 0.98
3420 4661 5.191426 GCATCTACTACTCCGTCCCATATA 58.809 45.833 0.00 0.00 0.00 0.86
3421 4662 4.017808 GCATCTACTACTCCGTCCCATAT 58.982 47.826 0.00 0.00 0.00 1.78
3426 4667 1.532007 CTCGCATCTACTACTCCGTCC 59.468 57.143 0.00 0.00 0.00 4.79
3446 4687 2.492449 TATAGCCTCTGCGCCGATGC 62.492 60.000 18.68 18.68 44.33 3.91
3447 4688 0.457509 CTATAGCCTCTGCGCCGATG 60.458 60.000 4.18 1.59 44.33 3.84
3448 4689 1.886585 CTATAGCCTCTGCGCCGAT 59.113 57.895 4.18 0.00 44.33 4.18
3449 4690 2.920645 GCTATAGCCTCTGCGCCGA 61.921 63.158 14.13 2.10 44.33 5.54
3450 4691 2.431601 GCTATAGCCTCTGCGCCG 60.432 66.667 14.13 0.00 44.33 6.46
3451 4692 1.018226 CATGCTATAGCCTCTGCGCC 61.018 60.000 21.84 0.00 44.33 6.53
3452 4693 0.320247 ACATGCTATAGCCTCTGCGC 60.320 55.000 21.84 0.00 44.33 6.09
3453 4694 1.797046 CAACATGCTATAGCCTCTGCG 59.203 52.381 21.84 8.08 44.33 5.18
3454 4695 2.547211 CACAACATGCTATAGCCTCTGC 59.453 50.000 21.84 0.00 41.18 4.26
3455 4696 4.063998 TCACAACATGCTATAGCCTCTG 57.936 45.455 21.84 17.40 41.18 3.35
3456 4697 4.446371 GTTCACAACATGCTATAGCCTCT 58.554 43.478 21.84 4.08 41.18 3.69
3457 4698 3.246226 CGTTCACAACATGCTATAGCCTC 59.754 47.826 21.84 0.00 41.18 4.70
3458 4699 3.198068 CGTTCACAACATGCTATAGCCT 58.802 45.455 21.84 9.61 41.18 4.58
3459 4700 2.287915 CCGTTCACAACATGCTATAGCC 59.712 50.000 21.84 4.84 41.18 3.93
3460 4701 2.286418 GCCGTTCACAACATGCTATAGC 60.286 50.000 18.18 18.18 42.50 2.97
3461 4702 3.198068 AGCCGTTCACAACATGCTATAG 58.802 45.455 0.00 0.00 37.37 1.31
3462 4703 3.194861 GAGCCGTTCACAACATGCTATA 58.805 45.455 0.00 0.00 38.70 1.31
3463 4704 2.009774 GAGCCGTTCACAACATGCTAT 58.990 47.619 0.00 0.00 38.70 2.97
3464 4705 1.270571 TGAGCCGTTCACAACATGCTA 60.271 47.619 0.00 0.00 38.70 3.49
3465 4706 0.534877 TGAGCCGTTCACAACATGCT 60.535 50.000 0.00 1.25 40.52 3.79
3466 4707 1.948508 TGAGCCGTTCACAACATGC 59.051 52.632 0.00 0.00 0.00 4.06
3474 4715 0.465460 AAGCCAAAGTGAGCCGTTCA 60.465 50.000 0.00 0.00 0.00 3.18
3475 4716 0.238553 GAAGCCAAAGTGAGCCGTTC 59.761 55.000 0.00 0.00 0.00 3.95
3476 4717 0.465460 TGAAGCCAAAGTGAGCCGTT 60.465 50.000 0.00 0.00 0.00 4.44
3477 4718 0.886490 CTGAAGCCAAAGTGAGCCGT 60.886 55.000 0.00 0.00 0.00 5.68
3478 4719 0.603707 TCTGAAGCCAAAGTGAGCCG 60.604 55.000 0.00 0.00 0.00 5.52
3479 4720 1.831580 ATCTGAAGCCAAAGTGAGCC 58.168 50.000 0.00 0.00 0.00 4.70
3480 4721 3.930634 AAATCTGAAGCCAAAGTGAGC 57.069 42.857 0.00 0.00 0.00 4.26
3481 4722 4.456911 TGCTAAATCTGAAGCCAAAGTGAG 59.543 41.667 0.00 0.00 37.97 3.51
3482 4723 4.216257 GTGCTAAATCTGAAGCCAAAGTGA 59.784 41.667 0.00 0.00 37.97 3.41
3483 4724 4.217118 AGTGCTAAATCTGAAGCCAAAGTG 59.783 41.667 0.00 0.00 37.97 3.16
3484 4725 4.401925 AGTGCTAAATCTGAAGCCAAAGT 58.598 39.130 0.00 0.00 37.97 2.66
3485 4726 6.317140 TCATAGTGCTAAATCTGAAGCCAAAG 59.683 38.462 0.00 0.00 37.97 2.77
3486 4727 6.179756 TCATAGTGCTAAATCTGAAGCCAAA 58.820 36.000 0.00 0.00 37.97 3.28
3487 4728 5.744171 TCATAGTGCTAAATCTGAAGCCAA 58.256 37.500 0.00 0.00 37.97 4.52
3488 4729 5.357742 TCATAGTGCTAAATCTGAAGCCA 57.642 39.130 0.00 0.00 37.97 4.75
3489 4730 6.051717 TCTTCATAGTGCTAAATCTGAAGCC 58.948 40.000 12.13 0.00 39.44 4.35
3490 4731 7.727331 ATCTTCATAGTGCTAAATCTGAAGC 57.273 36.000 12.13 0.00 39.44 3.86
3491 4732 9.322773 TGAATCTTCATAGTGCTAAATCTGAAG 57.677 33.333 11.28 11.28 40.42 3.02
3492 4733 9.842775 ATGAATCTTCATAGTGCTAAATCTGAA 57.157 29.630 3.62 0.00 45.54 3.02
3493 4734 9.842775 AATGAATCTTCATAGTGCTAAATCTGA 57.157 29.630 5.88 0.00 46.60 3.27
3498 4739 7.975616 GCCAAAATGAATCTTCATAGTGCTAAA 59.024 33.333 5.88 0.00 46.60 1.85
3499 4740 7.416664 GGCCAAAATGAATCTTCATAGTGCTAA 60.417 37.037 0.00 0.00 46.60 3.09
3500 4741 6.039717 GGCCAAAATGAATCTTCATAGTGCTA 59.960 38.462 0.00 0.00 46.60 3.49
3501 4742 5.163478 GGCCAAAATGAATCTTCATAGTGCT 60.163 40.000 0.00 0.00 46.60 4.40
3502 4743 5.045872 GGCCAAAATGAATCTTCATAGTGC 58.954 41.667 0.00 6.88 46.60 4.40
3503 4744 6.461110 AGGCCAAAATGAATCTTCATAGTG 57.539 37.500 5.01 7.15 46.60 2.74
3504 4745 5.297776 CGAGGCCAAAATGAATCTTCATAGT 59.702 40.000 5.01 0.00 46.60 2.12
3505 4746 5.278169 CCGAGGCCAAAATGAATCTTCATAG 60.278 44.000 5.01 0.75 46.60 2.23
3506 4747 4.580167 CCGAGGCCAAAATGAATCTTCATA 59.420 41.667 5.01 0.00 46.60 2.15
3508 4749 2.754552 CCGAGGCCAAAATGAATCTTCA 59.245 45.455 5.01 0.00 42.14 3.02
3509 4750 3.016736 TCCGAGGCCAAAATGAATCTTC 58.983 45.455 5.01 0.00 0.00 2.87
3510 4751 3.085952 TCCGAGGCCAAAATGAATCTT 57.914 42.857 5.01 0.00 0.00 2.40
3511 4752 2.806945 TCCGAGGCCAAAATGAATCT 57.193 45.000 5.01 0.00 0.00 2.40
3512 4753 3.709987 CAATCCGAGGCCAAAATGAATC 58.290 45.455 5.01 0.00 0.00 2.52
3513 4754 2.159057 GCAATCCGAGGCCAAAATGAAT 60.159 45.455 5.01 0.00 0.00 2.57
3514 4755 1.204467 GCAATCCGAGGCCAAAATGAA 59.796 47.619 5.01 0.00 0.00 2.57
3515 4756 0.817013 GCAATCCGAGGCCAAAATGA 59.183 50.000 5.01 0.00 0.00 2.57
3516 4757 0.531657 TGCAATCCGAGGCCAAAATG 59.468 50.000 5.01 0.00 0.00 2.32
3517 4758 1.205417 CTTGCAATCCGAGGCCAAAAT 59.795 47.619 5.01 0.00 0.00 1.82
3518 4759 0.602562 CTTGCAATCCGAGGCCAAAA 59.397 50.000 5.01 0.00 0.00 2.44
3519 4760 0.251121 TCTTGCAATCCGAGGCCAAA 60.251 50.000 5.01 0.00 0.00 3.28
3520 4761 0.034186 ATCTTGCAATCCGAGGCCAA 60.034 50.000 5.01 0.00 0.00 4.52
3521 4762 0.034186 AATCTTGCAATCCGAGGCCA 60.034 50.000 5.01 0.00 0.00 5.36
3522 4763 0.383231 CAATCTTGCAATCCGAGGCC 59.617 55.000 0.00 0.00 0.00 5.19
3523 4764 1.098050 ACAATCTTGCAATCCGAGGC 58.902 50.000 0.00 0.00 0.00 4.70
3524 4765 5.066375 TCAATAACAATCTTGCAATCCGAGG 59.934 40.000 0.00 0.00 0.00 4.63
3525 4766 6.122850 TCAATAACAATCTTGCAATCCGAG 57.877 37.500 0.00 0.00 0.00 4.63
3526 4767 6.318396 TCATCAATAACAATCTTGCAATCCGA 59.682 34.615 0.00 0.00 0.00 4.55
3527 4768 6.415867 GTCATCAATAACAATCTTGCAATCCG 59.584 38.462 0.00 0.00 0.00 4.18
3528 4769 7.221452 GTGTCATCAATAACAATCTTGCAATCC 59.779 37.037 0.00 0.00 0.00 3.01
3529 4770 7.221452 GGTGTCATCAATAACAATCTTGCAATC 59.779 37.037 0.00 0.00 0.00 2.67
3530 4771 7.037438 GGTGTCATCAATAACAATCTTGCAAT 58.963 34.615 0.00 0.00 0.00 3.56
3531 4772 6.389091 GGTGTCATCAATAACAATCTTGCAA 58.611 36.000 0.00 0.00 0.00 4.08
3532 4773 5.391843 CGGTGTCATCAATAACAATCTTGCA 60.392 40.000 0.00 0.00 0.00 4.08
3533 4774 5.030295 CGGTGTCATCAATAACAATCTTGC 58.970 41.667 0.00 0.00 0.00 4.01
3534 4775 5.030295 GCGGTGTCATCAATAACAATCTTG 58.970 41.667 0.00 0.00 0.00 3.02
3535 4776 4.699735 TGCGGTGTCATCAATAACAATCTT 59.300 37.500 0.00 0.00 0.00 2.40
3536 4777 4.260985 TGCGGTGTCATCAATAACAATCT 58.739 39.130 0.00 0.00 0.00 2.40
3537 4778 4.614555 TGCGGTGTCATCAATAACAATC 57.385 40.909 0.00 0.00 0.00 2.67
3538 4779 5.384063 TTTGCGGTGTCATCAATAACAAT 57.616 34.783 0.00 0.00 0.00 2.71
3539 4780 4.320861 CCTTTGCGGTGTCATCAATAACAA 60.321 41.667 0.00 0.00 0.00 2.83
3540 4781 3.190327 CCTTTGCGGTGTCATCAATAACA 59.810 43.478 0.00 0.00 0.00 2.41
3541 4782 3.438781 TCCTTTGCGGTGTCATCAATAAC 59.561 43.478 0.00 0.00 0.00 1.89
3542 4783 3.680490 TCCTTTGCGGTGTCATCAATAA 58.320 40.909 0.00 0.00 0.00 1.40
3543 4784 3.342377 TCCTTTGCGGTGTCATCAATA 57.658 42.857 0.00 0.00 0.00 1.90
3544 4785 2.198827 TCCTTTGCGGTGTCATCAAT 57.801 45.000 0.00 0.00 0.00 2.57
3545 4786 1.879380 CTTCCTTTGCGGTGTCATCAA 59.121 47.619 0.00 0.00 0.00 2.57
3546 4787 1.522668 CTTCCTTTGCGGTGTCATCA 58.477 50.000 0.00 0.00 0.00 3.07
3547 4788 0.804989 CCTTCCTTTGCGGTGTCATC 59.195 55.000 0.00 0.00 0.00 2.92
3548 4789 0.400213 TCCTTCCTTTGCGGTGTCAT 59.600 50.000 0.00 0.00 0.00 3.06
3549 4790 0.534203 GTCCTTCCTTTGCGGTGTCA 60.534 55.000 0.00 0.00 0.00 3.58
3550 4791 0.250338 AGTCCTTCCTTTGCGGTGTC 60.250 55.000 0.00 0.00 0.00 3.67
3551 4792 0.535102 CAGTCCTTCCTTTGCGGTGT 60.535 55.000 0.00 0.00 0.00 4.16
3552 4793 1.237285 CCAGTCCTTCCTTTGCGGTG 61.237 60.000 0.00 0.00 0.00 4.94
3553 4794 1.073199 CCAGTCCTTCCTTTGCGGT 59.927 57.895 0.00 0.00 0.00 5.68
3554 4795 1.675641 CCCAGTCCTTCCTTTGCGG 60.676 63.158 0.00 0.00 0.00 5.69
3555 4796 0.674895 CTCCCAGTCCTTCCTTTGCG 60.675 60.000 0.00 0.00 0.00 4.85
3556 4797 0.962855 GCTCCCAGTCCTTCCTTTGC 60.963 60.000 0.00 0.00 0.00 3.68
3557 4798 0.695347 AGCTCCCAGTCCTTCCTTTG 59.305 55.000 0.00 0.00 0.00 2.77
3558 4799 0.988063 GAGCTCCCAGTCCTTCCTTT 59.012 55.000 0.87 0.00 0.00 3.11
3559 4800 0.178891 TGAGCTCCCAGTCCTTCCTT 60.179 55.000 12.15 0.00 0.00 3.36
3560 4801 0.043940 ATGAGCTCCCAGTCCTTCCT 59.956 55.000 12.15 0.00 0.00 3.36
3561 4802 0.179936 CATGAGCTCCCAGTCCTTCC 59.820 60.000 12.15 0.00 0.00 3.46
3562 4803 0.463474 GCATGAGCTCCCAGTCCTTC 60.463 60.000 12.15 0.00 37.91 3.46
3563 4804 1.203441 TGCATGAGCTCCCAGTCCTT 61.203 55.000 12.15 0.00 42.74 3.36
3564 4805 0.987081 ATGCATGAGCTCCCAGTCCT 60.987 55.000 12.15 0.00 42.74 3.85
3565 4806 0.534652 GATGCATGAGCTCCCAGTCC 60.535 60.000 12.15 0.00 42.74 3.85
3566 4807 0.469070 AGATGCATGAGCTCCCAGTC 59.531 55.000 12.15 3.31 42.74 3.51
3567 4808 1.798626 TAGATGCATGAGCTCCCAGT 58.201 50.000 12.15 0.87 42.74 4.00
3568 4809 2.302157 TGATAGATGCATGAGCTCCCAG 59.698 50.000 12.15 1.79 42.74 4.45
3569 4810 2.038164 GTGATAGATGCATGAGCTCCCA 59.962 50.000 12.15 6.27 42.74 4.37
3570 4811 2.614987 GGTGATAGATGCATGAGCTCCC 60.615 54.545 12.15 0.00 42.74 4.30
3571 4812 2.038164 TGGTGATAGATGCATGAGCTCC 59.962 50.000 12.15 5.77 42.74 4.70
3572 4813 3.397849 TGGTGATAGATGCATGAGCTC 57.602 47.619 2.46 6.82 42.74 4.09
3573 4814 3.496337 CCTTGGTGATAGATGCATGAGCT 60.496 47.826 2.46 0.00 42.74 4.09
3574 4815 2.812591 CCTTGGTGATAGATGCATGAGC 59.187 50.000 2.46 0.00 42.57 4.26
3575 4816 4.040095 TCTCCTTGGTGATAGATGCATGAG 59.960 45.833 2.46 0.00 0.00 2.90
3576 4817 3.969312 TCTCCTTGGTGATAGATGCATGA 59.031 43.478 2.46 0.00 0.00 3.07
3577 4818 4.347360 TCTCCTTGGTGATAGATGCATG 57.653 45.455 2.46 0.00 0.00 4.06
3578 4819 4.322574 CGATCTCCTTGGTGATAGATGCAT 60.323 45.833 0.00 0.00 0.00 3.96
3579 4820 3.006217 CGATCTCCTTGGTGATAGATGCA 59.994 47.826 4.44 0.00 0.00 3.96
3580 4821 3.006323 ACGATCTCCTTGGTGATAGATGC 59.994 47.826 15.22 0.24 0.00 3.91
3581 4822 4.862902 ACGATCTCCTTGGTGATAGATG 57.137 45.455 15.22 5.52 0.00 2.90
3582 4823 6.582677 CTTACGATCTCCTTGGTGATAGAT 57.417 41.667 15.22 4.18 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.