Multiple sequence alignment - TraesCS3A01G357000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G357000 chr3A 100.000 4379 0 0 1 4379 605002990 604998612 0.000000e+00 8087.0
1 TraesCS3A01G357000 chr3A 87.786 1048 78 18 3365 4379 313182882 313181852 0.000000e+00 1181.0
2 TraesCS3A01G357000 chr3A 92.857 252 12 2 1 246 145228950 145229201 1.160000e-95 361.0
3 TraesCS3A01G357000 chr3A 89.600 250 25 1 291 540 145249674 145249922 2.540000e-82 316.0
4 TraesCS3A01G357000 chr3A 88.983 118 13 0 644 761 605006622 605006739 3.530000e-31 147.0
5 TraesCS3A01G357000 chr3A 83.478 115 12 3 760 873 528712775 528712667 2.790000e-17 100.0
6 TraesCS3A01G357000 chr7D 89.561 1983 161 27 992 2953 58501030 58502987 0.000000e+00 2473.0
7 TraesCS3A01G357000 chr7D 86.410 493 45 7 3207 3677 78190606 78191098 1.810000e-143 520.0
8 TraesCS3A01G357000 chr7D 83.190 232 17 13 2978 3195 78190262 78190485 4.470000e-45 193.0
9 TraesCS3A01G357000 chr7D 82.000 200 16 9 760 958 17149255 17149075 7.590000e-33 152.0
10 TraesCS3A01G357000 chr7D 85.965 114 12 4 760 871 597416984 597416873 7.690000e-23 119.0
11 TraesCS3A01G357000 chr7A 88.537 1989 167 37 992 2953 62879259 62881213 0.000000e+00 2353.0
12 TraesCS3A01G357000 chr7A 92.681 1093 51 17 2958 4022 658724043 658725134 0.000000e+00 1548.0
13 TraesCS3A01G357000 chr7A 92.018 1090 50 21 2961 4022 576382255 576381175 0.000000e+00 1496.0
14 TraesCS3A01G357000 chr7A 91.262 721 34 4 2955 3647 728375023 728374304 0.000000e+00 955.0
15 TraesCS3A01G357000 chr7A 84.756 492 47 11 3207 3677 81633098 81633582 6.630000e-128 468.0
16 TraesCS3A01G357000 chr4A 89.301 1402 120 14 1566 2953 675132350 675133735 0.000000e+00 1731.0
17 TraesCS3A01G357000 chr4A 88.667 600 54 8 2045 2640 675270358 675270947 0.000000e+00 719.0
18 TraesCS3A01G357000 chr4A 88.333 600 56 8 2045 2640 675212793 675213382 0.000000e+00 708.0
19 TraesCS3A01G357000 chr4A 88.372 516 33 18 992 1500 675131822 675132317 2.920000e-166 595.0
20 TraesCS3A01G357000 chr4A 91.473 387 25 3 3207 3586 651218135 651218520 3.880000e-145 525.0
21 TraesCS3A01G357000 chr4A 94.872 312 16 0 2642 2953 675213710 675214021 5.090000e-134 488.0
22 TraesCS3A01G357000 chr4A 94.872 312 16 0 2642 2953 675271275 675271586 5.090000e-134 488.0
23 TraesCS3A01G357000 chr4A 91.720 157 9 1 3054 3206 651217899 651218055 9.540000e-52 215.0
24 TraesCS3A01G357000 chr4A 83.436 163 21 3 760 922 723880306 723880150 3.530000e-31 147.0
25 TraesCS3A01G357000 chr5B 91.071 1120 82 14 3207 4312 56020331 56021446 0.000000e+00 1498.0
26 TraesCS3A01G357000 chr5B 91.429 280 14 8 4022 4295 496304226 496303951 4.130000e-100 375.0
27 TraesCS3A01G357000 chr5B 89.103 156 12 2 3057 3208 167760348 167760194 5.780000e-44 189.0
28 TraesCS3A01G357000 chr4B 90.420 1096 63 16 2956 4027 228742253 228743330 0.000000e+00 1404.0
29 TraesCS3A01G357000 chr4B 91.667 156 9 2 3055 3206 344472216 344472371 3.430000e-51 213.0
30 TraesCS3A01G357000 chr4B 93.805 113 7 0 3096 3208 53486997 53486885 2.090000e-38 171.0
31 TraesCS3A01G357000 chr4B 100.000 30 0 0 921 950 653274610 653274581 6.120000e-04 56.5
32 TraesCS3A01G357000 chr6A 87.788 1040 79 23 3371 4376 354884868 354883843 0.000000e+00 1173.0
33 TraesCS3A01G357000 chr6A 94.400 500 23 4 3533 4031 349780836 349781331 0.000000e+00 763.0
34 TraesCS3A01G357000 chr6A 94.200 500 27 2 3533 4031 518953409 518953907 0.000000e+00 761.0
35 TraesCS3A01G357000 chr6A 92.487 386 23 1 3207 3586 254936745 254937130 8.280000e-152 547.0
36 TraesCS3A01G357000 chr6A 91.720 157 9 2 3054 3206 254936509 254936665 9.540000e-52 215.0
37 TraesCS3A01G357000 chr5D 85.958 1054 87 32 3365 4379 380294266 380293235 0.000000e+00 1070.0
38 TraesCS3A01G357000 chr2B 91.667 780 33 6 1 761 123203159 123203925 0.000000e+00 1051.0
39 TraesCS3A01G357000 chr2B 91.003 778 38 5 1 759 123301835 123302599 0.000000e+00 1020.0
40 TraesCS3A01G357000 chr2B 84.848 363 40 12 4022 4376 496453427 496453072 6.970000e-93 351.0
41 TraesCS3A01G357000 chr2B 91.500 200 15 2 557 756 801019497 801019694 1.550000e-69 274.0
42 TraesCS3A01G357000 chr2B 80.397 403 34 21 4013 4376 33030279 33029883 9.340000e-67 265.0
43 TraesCS3A01G357000 chr2B 88.983 118 13 0 644 761 123199586 123199469 3.530000e-31 147.0
44 TraesCS3A01G357000 chr2B 88.235 119 14 0 644 762 123289791 123289673 4.570000e-30 143.0
45 TraesCS3A01G357000 chr2B 90.244 82 8 0 459 540 801019431 801019512 1.670000e-19 108.0
46 TraesCS3A01G357000 chr5A 91.071 784 38 11 1 761 698129813 698129039 0.000000e+00 1031.0
47 TraesCS3A01G357000 chr5A 94.600 500 25 2 3533 4031 554348979 554349477 0.000000e+00 773.0
48 TraesCS3A01G357000 chr5A 85.955 178 20 2 760 937 533869992 533870164 7.480000e-43 185.0
49 TraesCS3A01G357000 chr5A 89.831 118 12 0 644 761 698134110 698134227 7.590000e-33 152.0
50 TraesCS3A01G357000 chr6D 89.735 565 28 6 1 540 452316000 452316559 0.000000e+00 695.0
51 TraesCS3A01G357000 chr6D 88.688 221 21 3 760 979 212500950 212501167 2.600000e-67 267.0
52 TraesCS3A01G357000 chr3B 88.736 364 28 7 4027 4379 15861858 15861497 2.420000e-117 433.0
53 TraesCS3A01G357000 chr3B 87.085 271 25 9 4097 4360 557795947 557796214 9.210000e-77 298.0
54 TraesCS3A01G357000 chr3B 85.276 163 18 3 760 922 729777475 729777319 3.500000e-36 163.0
55 TraesCS3A01G357000 chr3B 79.149 235 24 14 760 993 817651485 817651275 5.910000e-29 139.0
56 TraesCS3A01G357000 chr6B 83.204 387 32 14 4022 4379 115213909 115213527 1.520000e-84 324.0
57 TraesCS3A01G357000 chr1B 85.284 299 24 9 4072 4360 78423096 78422808 1.540000e-74 291.0
58 TraesCS3A01G357000 chr7B 88.384 198 18 2 760 957 732775504 732775312 2.630000e-57 233.0
59 TraesCS3A01G357000 chr7B 84.956 226 16 9 2978 3191 25587834 25588053 3.430000e-51 213.0
60 TraesCS3A01G357000 chr2D 96.471 85 3 0 3124 3208 348066526 348066610 1.640000e-29 141.0
61 TraesCS3A01G357000 chr2D 100.000 30 0 0 921 950 302908401 302908430 6.120000e-04 56.5
62 TraesCS3A01G357000 chrUn 86.957 115 9 4 760 873 38756946 38756837 1.650000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G357000 chr3A 604998612 605002990 4378 True 8087.0 8087 100.0000 1 4379 1 chr3A.!!$R3 4378
1 TraesCS3A01G357000 chr3A 313181852 313182882 1030 True 1181.0 1181 87.7860 3365 4379 1 chr3A.!!$R1 1014
2 TraesCS3A01G357000 chr7D 58501030 58502987 1957 False 2473.0 2473 89.5610 992 2953 1 chr7D.!!$F1 1961
3 TraesCS3A01G357000 chr7D 78190262 78191098 836 False 356.5 520 84.8000 2978 3677 2 chr7D.!!$F2 699
4 TraesCS3A01G357000 chr7A 62879259 62881213 1954 False 2353.0 2353 88.5370 992 2953 1 chr7A.!!$F1 1961
5 TraesCS3A01G357000 chr7A 658724043 658725134 1091 False 1548.0 1548 92.6810 2958 4022 1 chr7A.!!$F3 1064
6 TraesCS3A01G357000 chr7A 576381175 576382255 1080 True 1496.0 1496 92.0180 2961 4022 1 chr7A.!!$R1 1061
7 TraesCS3A01G357000 chr7A 728374304 728375023 719 True 955.0 955 91.2620 2955 3647 1 chr7A.!!$R2 692
8 TraesCS3A01G357000 chr4A 675131822 675133735 1913 False 1163.0 1731 88.8365 992 2953 2 chr4A.!!$F2 1961
9 TraesCS3A01G357000 chr4A 675270358 675271586 1228 False 603.5 719 91.7695 2045 2953 2 chr4A.!!$F4 908
10 TraesCS3A01G357000 chr4A 675212793 675214021 1228 False 598.0 708 91.6025 2045 2953 2 chr4A.!!$F3 908
11 TraesCS3A01G357000 chr4A 651217899 651218520 621 False 370.0 525 91.5965 3054 3586 2 chr4A.!!$F1 532
12 TraesCS3A01G357000 chr5B 56020331 56021446 1115 False 1498.0 1498 91.0710 3207 4312 1 chr5B.!!$F1 1105
13 TraesCS3A01G357000 chr4B 228742253 228743330 1077 False 1404.0 1404 90.4200 2956 4027 1 chr4B.!!$F1 1071
14 TraesCS3A01G357000 chr6A 354883843 354884868 1025 True 1173.0 1173 87.7880 3371 4376 1 chr6A.!!$R1 1005
15 TraesCS3A01G357000 chr6A 254936509 254937130 621 False 381.0 547 92.1035 3054 3586 2 chr6A.!!$F3 532
16 TraesCS3A01G357000 chr5D 380293235 380294266 1031 True 1070.0 1070 85.9580 3365 4379 1 chr5D.!!$R1 1014
17 TraesCS3A01G357000 chr2B 123203159 123203925 766 False 1051.0 1051 91.6670 1 761 1 chr2B.!!$F1 760
18 TraesCS3A01G357000 chr2B 123301835 123302599 764 False 1020.0 1020 91.0030 1 759 1 chr2B.!!$F2 758
19 TraesCS3A01G357000 chr5A 698129039 698129813 774 True 1031.0 1031 91.0710 1 761 1 chr5A.!!$R1 760
20 TraesCS3A01G357000 chr6D 452316000 452316559 559 False 695.0 695 89.7350 1 540 1 chr6D.!!$F2 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
775 803 0.037734 CTTCCCACCAACTACCCCAC 59.962 60.0 0.00 0.0 0.00 4.61 F
880 908 0.041833 CCACCTCCTCTCTTCTCCCA 59.958 60.0 0.00 0.0 0.00 4.37 F
886 914 0.105778 CCTCTCTTCTCCCAATCCGC 59.894 60.0 0.00 0.0 0.00 5.54 F
985 1013 0.328548 CCCTACCCCTCCCTCCATTT 60.329 60.0 0.00 0.0 0.00 2.32 F
1081 1110 0.391927 ATTTCCGTTCGATTCCGGCA 60.392 50.0 12.35 0.0 43.87 5.69 F
2640 2692 0.537143 ACCAGTGAAAATGCCGCTGA 60.537 50.0 0.00 0.0 42.89 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2620 2672 0.314935 CAGCGGCATTTTCACTGGTT 59.685 50.000 1.45 0.0 0.00 3.67 R
2635 2687 1.045350 TCTGAATCTCCCCCTCAGCG 61.045 60.000 0.00 0.0 37.17 5.18 R
2640 2692 3.116199 TCATACCATCTGAATCTCCCCCT 60.116 47.826 0.00 0.0 0.00 4.79 R
2943 3322 0.318699 GGGCGGTCAAAAGCTTGAAC 60.319 55.000 0.00 0.0 44.54 3.18 R
3024 3403 0.606604 GGAAGCGAGACACCACCTTA 59.393 55.000 0.00 0.0 0.00 2.69 R
4320 4936 0.107848 AACCCGCGCTACTGCTATTT 60.108 50.000 5.56 0.0 36.97 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
297 323 2.292267 ACCCTAATGCTGCGAAATCAG 58.708 47.619 0.00 0.00 37.15 2.90
442 468 0.944311 GAAGCAGAGTCGAACGCCAA 60.944 55.000 0.00 0.00 0.00 4.52
443 469 0.531974 AAGCAGAGTCGAACGCCAAA 60.532 50.000 0.00 0.00 0.00 3.28
462 488 2.373335 AGGACACTAGCGATGGAGAT 57.627 50.000 0.00 0.00 0.00 2.75
571 599 0.905357 CTGTTCTCTCCCCCACGATT 59.095 55.000 0.00 0.00 0.00 3.34
579 607 1.113517 TCCCCCACGATTCCGATCTC 61.114 60.000 0.00 0.00 39.50 2.75
580 608 1.115930 CCCCCACGATTCCGATCTCT 61.116 60.000 0.00 0.00 39.50 3.10
622 650 2.918802 TCCCCTTGCCACGTACGT 60.919 61.111 16.72 16.72 0.00 3.57
653 681 5.956563 TGTTTGGGTTTCCTTGTAAGGTTTA 59.043 36.000 10.28 0.00 46.54 2.01
726 754 2.234414 TGCGGGTCCGATTTAACTAACT 59.766 45.455 14.15 0.00 42.83 2.24
761 789 6.665992 AAGGTTTAAATTGGACTTCTTCCC 57.334 37.500 0.00 0.00 45.17 3.97
762 790 5.711698 AGGTTTAAATTGGACTTCTTCCCA 58.288 37.500 0.00 0.00 45.17 4.37
763 791 5.538813 AGGTTTAAATTGGACTTCTTCCCAC 59.461 40.000 0.00 0.00 45.17 4.61
764 792 5.279306 GGTTTAAATTGGACTTCTTCCCACC 60.279 44.000 0.00 0.00 45.17 4.61
765 793 3.611025 AAATTGGACTTCTTCCCACCA 57.389 42.857 0.00 0.00 45.17 4.17
766 794 3.611025 AATTGGACTTCTTCCCACCAA 57.389 42.857 0.00 0.00 45.17 3.67
767 795 2.358322 TTGGACTTCTTCCCACCAAC 57.642 50.000 0.00 0.00 45.17 3.77
768 796 1.518367 TGGACTTCTTCCCACCAACT 58.482 50.000 0.00 0.00 45.17 3.16
769 797 2.696775 TGGACTTCTTCCCACCAACTA 58.303 47.619 0.00 0.00 45.17 2.24
770 798 2.370849 TGGACTTCTTCCCACCAACTAC 59.629 50.000 0.00 0.00 45.17 2.73
771 799 2.290134 GGACTTCTTCCCACCAACTACC 60.290 54.545 0.00 0.00 38.70 3.18
772 800 1.703513 ACTTCTTCCCACCAACTACCC 59.296 52.381 0.00 0.00 0.00 3.69
773 801 1.004394 CTTCTTCCCACCAACTACCCC 59.996 57.143 0.00 0.00 0.00 4.95
774 802 0.104356 TCTTCCCACCAACTACCCCA 60.104 55.000 0.00 0.00 0.00 4.96
775 803 0.037734 CTTCCCACCAACTACCCCAC 59.962 60.000 0.00 0.00 0.00 4.61
776 804 0.402272 TTCCCACCAACTACCCCACT 60.402 55.000 0.00 0.00 0.00 4.00
777 805 0.838987 TCCCACCAACTACCCCACTC 60.839 60.000 0.00 0.00 0.00 3.51
778 806 1.683441 CCACCAACTACCCCACTCC 59.317 63.158 0.00 0.00 0.00 3.85
779 807 1.131303 CCACCAACTACCCCACTCCA 61.131 60.000 0.00 0.00 0.00 3.86
780 808 0.991920 CACCAACTACCCCACTCCAT 59.008 55.000 0.00 0.00 0.00 3.41
781 809 1.065418 CACCAACTACCCCACTCCATC 60.065 57.143 0.00 0.00 0.00 3.51
782 810 1.285280 CCAACTACCCCACTCCATCA 58.715 55.000 0.00 0.00 0.00 3.07
783 811 1.846439 CCAACTACCCCACTCCATCAT 59.154 52.381 0.00 0.00 0.00 2.45
784 812 2.158755 CCAACTACCCCACTCCATCATC 60.159 54.545 0.00 0.00 0.00 2.92
785 813 1.807814 ACTACCCCACTCCATCATCC 58.192 55.000 0.00 0.00 0.00 3.51
786 814 1.009552 ACTACCCCACTCCATCATCCA 59.990 52.381 0.00 0.00 0.00 3.41
787 815 1.417890 CTACCCCACTCCATCATCCAC 59.582 57.143 0.00 0.00 0.00 4.02
788 816 1.281925 ACCCCACTCCATCATCCACC 61.282 60.000 0.00 0.00 0.00 4.61
789 817 1.533711 CCCACTCCATCATCCACCC 59.466 63.158 0.00 0.00 0.00 4.61
790 818 1.146930 CCACTCCATCATCCACCCG 59.853 63.158 0.00 0.00 0.00 5.28
791 819 1.524621 CACTCCATCATCCACCCGC 60.525 63.158 0.00 0.00 0.00 6.13
792 820 2.111878 CTCCATCATCCACCCGCC 59.888 66.667 0.00 0.00 0.00 6.13
793 821 3.482232 CTCCATCATCCACCCGCCC 62.482 68.421 0.00 0.00 0.00 6.13
794 822 4.586235 CCATCATCCACCCGCCCC 62.586 72.222 0.00 0.00 0.00 5.80
795 823 4.586235 CATCATCCACCCGCCCCC 62.586 72.222 0.00 0.00 0.00 5.40
802 830 3.676605 CACCCGCCCCCGTTTTTC 61.677 66.667 0.00 0.00 0.00 2.29
803 831 3.893399 ACCCGCCCCCGTTTTTCT 61.893 61.111 0.00 0.00 0.00 2.52
804 832 2.352039 CCCGCCCCCGTTTTTCTA 59.648 61.111 0.00 0.00 0.00 2.10
805 833 1.303480 CCCGCCCCCGTTTTTCTAA 60.303 57.895 0.00 0.00 0.00 2.10
806 834 0.894642 CCCGCCCCCGTTTTTCTAAA 60.895 55.000 0.00 0.00 0.00 1.85
807 835 0.960286 CCGCCCCCGTTTTTCTAAAA 59.040 50.000 0.00 0.00 0.00 1.52
808 836 1.340568 CCGCCCCCGTTTTTCTAAAAA 59.659 47.619 0.00 0.00 35.67 1.94
829 857 4.568072 AAATAAAAATCCACCCAAGCCC 57.432 40.909 0.00 0.00 0.00 5.19
830 858 1.945580 TAAAAATCCACCCAAGCCCC 58.054 50.000 0.00 0.00 0.00 5.80
831 859 1.191489 AAAAATCCACCCAAGCCCCG 61.191 55.000 0.00 0.00 0.00 5.73
832 860 2.087857 AAAATCCACCCAAGCCCCGA 62.088 55.000 0.00 0.00 0.00 5.14
833 861 1.874299 AAATCCACCCAAGCCCCGAT 61.874 55.000 0.00 0.00 0.00 4.18
834 862 2.284515 AATCCACCCAAGCCCCGATC 62.285 60.000 0.00 0.00 0.00 3.69
835 863 4.506255 CCACCCAAGCCCCGATCC 62.506 72.222 0.00 0.00 0.00 3.36
836 864 3.727258 CACCCAAGCCCCGATCCA 61.727 66.667 0.00 0.00 0.00 3.41
837 865 3.411517 ACCCAAGCCCCGATCCAG 61.412 66.667 0.00 0.00 0.00 3.86
838 866 3.089874 CCCAAGCCCCGATCCAGA 61.090 66.667 0.00 0.00 0.00 3.86
839 867 2.455565 CCCAAGCCCCGATCCAGAT 61.456 63.158 0.00 0.00 0.00 2.90
840 868 1.072159 CCAAGCCCCGATCCAGATC 59.928 63.158 0.00 0.00 34.56 2.75
841 869 1.072159 CAAGCCCCGATCCAGATCC 59.928 63.158 2.11 0.00 34.40 3.36
842 870 2.150051 AAGCCCCGATCCAGATCCC 61.150 63.158 2.11 0.00 34.40 3.85
843 871 3.641454 GCCCCGATCCAGATCCCC 61.641 72.222 2.11 0.00 34.40 4.81
844 872 2.205462 CCCCGATCCAGATCCCCT 59.795 66.667 2.11 0.00 34.40 4.79
845 873 1.915769 CCCCGATCCAGATCCCCTC 60.916 68.421 2.11 0.00 34.40 4.30
846 874 1.915769 CCCGATCCAGATCCCCTCC 60.916 68.421 2.11 0.00 34.40 4.30
847 875 1.152247 CCGATCCAGATCCCCTCCA 60.152 63.158 2.11 0.00 34.40 3.86
848 876 1.476007 CCGATCCAGATCCCCTCCAC 61.476 65.000 2.11 0.00 34.40 4.02
849 877 1.476007 CGATCCAGATCCCCTCCACC 61.476 65.000 2.11 0.00 34.40 4.61
850 878 1.460305 ATCCAGATCCCCTCCACCG 60.460 63.158 0.00 0.00 0.00 4.94
851 879 3.866582 CCAGATCCCCTCCACCGC 61.867 72.222 0.00 0.00 0.00 5.68
852 880 3.083349 CAGATCCCCTCCACCGCA 61.083 66.667 0.00 0.00 0.00 5.69
853 881 2.285368 AGATCCCCTCCACCGCAA 60.285 61.111 0.00 0.00 0.00 4.85
854 882 2.124695 GATCCCCTCCACCGCAAC 60.125 66.667 0.00 0.00 0.00 4.17
855 883 3.699134 GATCCCCTCCACCGCAACC 62.699 68.421 0.00 0.00 0.00 3.77
856 884 4.974438 TCCCCTCCACCGCAACCT 62.974 66.667 0.00 0.00 0.00 3.50
857 885 4.410400 CCCCTCCACCGCAACCTC 62.410 72.222 0.00 0.00 0.00 3.85
858 886 4.410400 CCCTCCACCGCAACCTCC 62.410 72.222 0.00 0.00 0.00 4.30
859 887 3.322466 CCTCCACCGCAACCTCCT 61.322 66.667 0.00 0.00 0.00 3.69
860 888 2.750350 CTCCACCGCAACCTCCTT 59.250 61.111 0.00 0.00 0.00 3.36
861 889 1.376037 CTCCACCGCAACCTCCTTC 60.376 63.158 0.00 0.00 0.00 3.46
862 890 2.359975 CCACCGCAACCTCCTTCC 60.360 66.667 0.00 0.00 0.00 3.46
863 891 2.429930 CACCGCAACCTCCTTCCA 59.570 61.111 0.00 0.00 0.00 3.53
864 892 1.966451 CACCGCAACCTCCTTCCAC 60.966 63.158 0.00 0.00 0.00 4.02
865 893 2.359975 CCGCAACCTCCTTCCACC 60.360 66.667 0.00 0.00 0.00 4.61
866 894 2.750350 CGCAACCTCCTTCCACCT 59.250 61.111 0.00 0.00 0.00 4.00
867 895 1.376037 CGCAACCTCCTTCCACCTC 60.376 63.158 0.00 0.00 0.00 3.85
868 896 1.002011 GCAACCTCCTTCCACCTCC 60.002 63.158 0.00 0.00 0.00 4.30
869 897 1.492993 GCAACCTCCTTCCACCTCCT 61.493 60.000 0.00 0.00 0.00 3.69
870 898 0.615850 CAACCTCCTTCCACCTCCTC 59.384 60.000 0.00 0.00 0.00 3.71
871 899 0.494095 AACCTCCTTCCACCTCCTCT 59.506 55.000 0.00 0.00 0.00 3.69
872 900 0.041982 ACCTCCTTCCACCTCCTCTC 59.958 60.000 0.00 0.00 0.00 3.20
873 901 0.338120 CCTCCTTCCACCTCCTCTCT 59.662 60.000 0.00 0.00 0.00 3.10
874 902 1.273552 CCTCCTTCCACCTCCTCTCTT 60.274 57.143 0.00 0.00 0.00 2.85
875 903 2.107366 CTCCTTCCACCTCCTCTCTTC 58.893 57.143 0.00 0.00 0.00 2.87
876 904 1.719378 TCCTTCCACCTCCTCTCTTCT 59.281 52.381 0.00 0.00 0.00 2.85
877 905 2.107366 CCTTCCACCTCCTCTCTTCTC 58.893 57.143 0.00 0.00 0.00 2.87
878 906 2.107366 CTTCCACCTCCTCTCTTCTCC 58.893 57.143 0.00 0.00 0.00 3.71
879 907 0.336737 TCCACCTCCTCTCTTCTCCC 59.663 60.000 0.00 0.00 0.00 4.30
880 908 0.041833 CCACCTCCTCTCTTCTCCCA 59.958 60.000 0.00 0.00 0.00 4.37
881 909 1.553417 CCACCTCCTCTCTTCTCCCAA 60.553 57.143 0.00 0.00 0.00 4.12
882 910 2.476199 CACCTCCTCTCTTCTCCCAAT 58.524 52.381 0.00 0.00 0.00 3.16
883 911 2.433970 CACCTCCTCTCTTCTCCCAATC 59.566 54.545 0.00 0.00 0.00 2.67
884 912 2.046292 CCTCCTCTCTTCTCCCAATCC 58.954 57.143 0.00 0.00 0.00 3.01
885 913 1.686052 CTCCTCTCTTCTCCCAATCCG 59.314 57.143 0.00 0.00 0.00 4.18
886 914 0.105778 CCTCTCTTCTCCCAATCCGC 59.894 60.000 0.00 0.00 0.00 5.54
887 915 1.118838 CTCTCTTCTCCCAATCCGCT 58.881 55.000 0.00 0.00 0.00 5.52
888 916 0.826715 TCTCTTCTCCCAATCCGCTG 59.173 55.000 0.00 0.00 0.00 5.18
889 917 0.813210 CTCTTCTCCCAATCCGCTGC 60.813 60.000 0.00 0.00 0.00 5.25
890 918 1.078214 CTTCTCCCAATCCGCTGCA 60.078 57.895 0.00 0.00 0.00 4.41
891 919 1.078214 TTCTCCCAATCCGCTGCAG 60.078 57.895 10.11 10.11 0.00 4.41
892 920 3.207669 CTCCCAATCCGCTGCAGC 61.208 66.667 29.12 29.12 37.78 5.25
893 921 4.802051 TCCCAATCCGCTGCAGCC 62.802 66.667 32.07 15.05 37.91 4.85
929 957 4.733725 CCCTCCAACCCCCTCCGA 62.734 72.222 0.00 0.00 0.00 4.55
930 958 3.400054 CCTCCAACCCCCTCCGAC 61.400 72.222 0.00 0.00 0.00 4.79
931 959 3.400054 CTCCAACCCCCTCCGACC 61.400 72.222 0.00 0.00 0.00 4.79
976 1004 3.798511 GGTGCTGCCCTACCCCTC 61.799 72.222 0.00 0.00 0.00 4.30
977 1005 3.798511 GTGCTGCCCTACCCCTCC 61.799 72.222 0.00 0.00 0.00 4.30
979 1007 4.825679 GCTGCCCTACCCCTCCCT 62.826 72.222 0.00 0.00 0.00 4.20
980 1008 2.446802 CTGCCCTACCCCTCCCTC 60.447 72.222 0.00 0.00 0.00 4.30
981 1009 4.103928 TGCCCTACCCCTCCCTCC 62.104 72.222 0.00 0.00 0.00 4.30
982 1010 4.103928 GCCCTACCCCTCCCTCCA 62.104 72.222 0.00 0.00 0.00 3.86
983 1011 3.046882 CCCTACCCCTCCCTCCAT 58.953 66.667 0.00 0.00 0.00 3.41
984 1012 1.321943 CCCTACCCCTCCCTCCATT 59.678 63.158 0.00 0.00 0.00 3.16
985 1013 0.328548 CCCTACCCCTCCCTCCATTT 60.329 60.000 0.00 0.00 0.00 2.32
986 1014 1.141185 CCTACCCCTCCCTCCATTTC 58.859 60.000 0.00 0.00 0.00 2.17
987 1015 1.141185 CTACCCCTCCCTCCATTTCC 58.859 60.000 0.00 0.00 0.00 3.13
988 1016 0.728843 TACCCCTCCCTCCATTTCCT 59.271 55.000 0.00 0.00 0.00 3.36
989 1017 0.921256 ACCCCTCCCTCCATTTCCTG 60.921 60.000 0.00 0.00 0.00 3.86
990 1018 1.228510 CCCTCCCTCCATTTCCTGC 59.771 63.158 0.00 0.00 0.00 4.85
1037 1065 1.277273 GCCCTGAAGGTACGGTTACTT 59.723 52.381 0.00 0.00 38.26 2.24
1044 1072 5.184711 TGAAGGTACGGTTACTTGTTGTTT 58.815 37.500 2.35 0.00 0.00 2.83
1051 1079 2.367241 GGTTACTTGTTGTTTGGCCCAT 59.633 45.455 0.00 0.00 0.00 4.00
1065 1094 3.152662 CCCATAGGCATGCCCATTT 57.847 52.632 33.14 17.30 36.58 2.32
1081 1110 0.391927 ATTTCCGTTCGATTCCGGCA 60.392 50.000 12.35 0.00 43.87 5.69
1136 1165 1.379977 TGGCGTGTTTTGGGTCCAA 60.380 52.632 0.00 0.00 0.00 3.53
1154 1183 1.160329 AATTACCGCGGCTGCTCATC 61.160 55.000 28.58 0.00 39.65 2.92
1156 1185 2.906182 TTACCGCGGCTGCTCATCTG 62.906 60.000 28.58 0.00 39.65 2.90
1281 1310 1.004745 GAGGGGCATTCAGGTTGAGAA 59.995 52.381 0.00 0.00 0.00 2.87
1285 1314 2.357569 GGGCATTCAGGTTGAGAAGGAT 60.358 50.000 0.00 0.00 0.00 3.24
1286 1315 2.948315 GGCATTCAGGTTGAGAAGGATC 59.052 50.000 0.00 0.00 0.00 3.36
1312 1344 7.401246 TCCCATGCCTTTAAATTTTAGCATTT 58.599 30.769 10.15 0.00 38.82 2.32
1413 1445 8.584157 AGTGATTTTTATTTGTATCAGGTGCAA 58.416 29.630 0.00 0.00 0.00 4.08
1414 1446 9.369904 GTGATTTTTATTTGTATCAGGTGCAAT 57.630 29.630 0.00 0.00 32.30 3.56
1415 1447 9.585099 TGATTTTTATTTGTATCAGGTGCAATC 57.415 29.630 0.00 0.00 32.30 2.67
1416 1448 8.633075 ATTTTTATTTGTATCAGGTGCAATCG 57.367 30.769 0.00 0.00 32.30 3.34
1460 1494 8.635765 AATTCCTTTTGTTCTGTTATGCTAGA 57.364 30.769 0.00 0.00 0.00 2.43
1468 1502 8.942338 TTGTTCTGTTATGCTAGATAATTCGT 57.058 30.769 0.00 0.00 0.00 3.85
1496 1530 5.500645 AGTCCAACAGTTTTAGTTTCTGC 57.499 39.130 0.00 0.00 33.12 4.26
1524 1558 5.493809 CCTTTTAGGGGTTCACGATTTCTA 58.506 41.667 0.00 0.00 0.00 2.10
1532 1566 6.070424 AGGGGTTCACGATTTCTAGTTGATTA 60.070 38.462 0.00 0.00 0.00 1.75
1563 1597 6.214191 TGATCAGGCTAGTTAAGTTCTGAG 57.786 41.667 12.80 0.00 39.34 3.35
1564 1598 5.127845 TGATCAGGCTAGTTAAGTTCTGAGG 59.872 44.000 12.80 0.00 39.34 3.86
1572 1606 5.367945 AGTTAAGTTCTGAGGTGGAAACA 57.632 39.130 0.00 0.00 38.70 2.83
1603 1637 2.353704 GGTTCCTTGCCATTTGCTTACC 60.354 50.000 0.00 0.00 42.00 2.85
1629 1663 5.591877 AGATGGATGTTATTCTTTGGCAGAC 59.408 40.000 0.00 0.00 0.00 3.51
1637 1671 6.428465 TGTTATTCTTTGGCAGACGAAATACA 59.572 34.615 0.00 0.00 0.00 2.29
1699 1737 4.088634 AGGCAAGGAATGTGAATGCTAAA 58.911 39.130 0.00 0.00 37.20 1.85
1703 1741 5.517770 GCAAGGAATGTGAATGCTAAATCAC 59.482 40.000 0.00 0.00 44.84 3.06
1705 1743 4.336433 AGGAATGTGAATGCTAAATCACCG 59.664 41.667 3.71 0.00 44.16 4.94
1707 1745 3.066291 TGTGAATGCTAAATCACCGGT 57.934 42.857 0.00 0.00 44.16 5.28
1732 1771 3.694566 GGTAAACACAGAATAAGCCAGGG 59.305 47.826 0.00 0.00 0.00 4.45
1744 1783 7.121759 CAGAATAAGCCAGGGTATGAATTATGG 59.878 40.741 0.00 0.00 0.00 2.74
1753 1792 5.835280 AGGGTATGAATTATGGCCTGAAAAG 59.165 40.000 3.32 0.00 0.00 2.27
1770 1809 1.680338 AAGGCAGTTGTGGAGTTCAC 58.320 50.000 0.00 0.00 46.23 3.18
1790 1829 9.688091 AGTTCACTACTGAAGAGAGACATTATA 57.312 33.333 0.00 0.00 37.06 0.98
1860 1906 6.992715 GCCTAGAATTAGCTTCATGGAACTTA 59.007 38.462 0.00 0.00 36.24 2.24
1862 1908 9.213799 CCTAGAATTAGCTTCATGGAACTTATC 57.786 37.037 0.00 0.00 36.24 1.75
1863 1909 9.770097 CTAGAATTAGCTTCATGGAACTTATCA 57.230 33.333 0.00 0.00 36.24 2.15
1871 1917 6.096001 GCTTCATGGAACTTATCATTTGACCT 59.904 38.462 0.00 0.00 0.00 3.85
1912 1959 4.095483 GCCATTCAAATCTCAATGACGAGT 59.905 41.667 0.00 0.00 32.56 4.18
1913 1960 5.566623 CCATTCAAATCTCAATGACGAGTG 58.433 41.667 0.00 0.00 32.56 3.51
1914 1961 5.352293 CCATTCAAATCTCAATGACGAGTGA 59.648 40.000 0.00 0.00 32.56 3.41
1917 1964 6.859420 TCAAATCTCAATGACGAGTGAAAA 57.141 33.333 0.00 0.00 34.46 2.29
1948 1995 0.731855 GTGTCCTGCCTCGTCGTAAC 60.732 60.000 0.00 0.00 0.00 2.50
1974 2021 5.288472 GCGACCCAAGCTTTTGTATTTTATG 59.712 40.000 0.00 0.00 0.00 1.90
1975 2022 5.288472 CGACCCAAGCTTTTGTATTTTATGC 59.712 40.000 0.00 0.00 0.00 3.14
1976 2023 6.358974 ACCCAAGCTTTTGTATTTTATGCT 57.641 33.333 0.00 0.00 0.00 3.79
1981 2028 7.260603 CAAGCTTTTGTATTTTATGCTAGGCT 58.739 34.615 0.00 0.00 0.00 4.58
1983 2030 7.260603 AGCTTTTGTATTTTATGCTAGGCTTG 58.739 34.615 0.00 0.00 0.00 4.01
2003 2050 6.086871 GCTTGCTAGGAGTTTGTTTTATGTC 58.913 40.000 0.00 0.00 0.00 3.06
2014 2061 5.590530 TTGTTTTATGTCTGCAGGTTTGT 57.409 34.783 15.13 0.00 0.00 2.83
2015 2062 5.590530 TGTTTTATGTCTGCAGGTTTGTT 57.409 34.783 15.13 0.00 0.00 2.83
2016 2063 5.971763 TGTTTTATGTCTGCAGGTTTGTTT 58.028 33.333 15.13 0.00 0.00 2.83
2017 2064 6.402222 TGTTTTATGTCTGCAGGTTTGTTTT 58.598 32.000 15.13 0.00 0.00 2.43
2018 2065 7.548097 TGTTTTATGTCTGCAGGTTTGTTTTA 58.452 30.769 15.13 0.00 0.00 1.52
2066 2113 9.797556 TTAAGATGCAAGATCAAATGATTCAAG 57.202 29.630 0.00 0.00 34.37 3.02
2067 2114 7.406031 AGATGCAAGATCAAATGATTCAAGT 57.594 32.000 0.00 0.00 34.37 3.16
2070 2117 8.922058 ATGCAAGATCAAATGATTCAAGTTAC 57.078 30.769 0.00 0.00 34.37 2.50
2074 2121 8.843733 CAAGATCAAATGATTCAAGTTACGTTG 58.156 33.333 0.00 0.00 34.37 4.10
2080 2127 4.793071 TGATTCAAGTTACGTTGGCATTG 58.207 39.130 0.00 0.00 0.00 2.82
2085 2132 4.109050 CAAGTTACGTTGGCATTGTTTGT 58.891 39.130 0.00 0.00 0.00 2.83
2102 2149 6.809630 TGTTTGTTGCTAGCATGTATAACA 57.190 33.333 20.13 19.35 0.00 2.41
2105 2152 7.040755 TGTTTGTTGCTAGCATGTATAACAACT 60.041 33.333 23.34 0.98 37.64 3.16
2108 2155 7.526608 TGTTGCTAGCATGTATAACAACTTTC 58.473 34.615 20.13 0.00 37.42 2.62
2181 2229 3.000523 GCATTTTTGTGTGTGCAGTCAAG 59.999 43.478 0.00 0.00 37.52 3.02
2185 2233 0.734309 TGTGTGTGCAGTCAAGCTTG 59.266 50.000 20.81 20.81 34.99 4.01
2304 2355 9.878599 AATATCTTGCGTAAATTTCCTATTTCG 57.121 29.630 0.00 0.00 0.00 3.46
2344 2396 5.191722 TGCCCCAGAGAACTAACATTTATCT 59.808 40.000 0.00 0.00 0.00 1.98
2423 2475 1.305930 GCCCTTGAAGCCAAGTACCG 61.306 60.000 0.00 0.00 46.37 4.02
2454 2506 6.542005 TGTATGAACCATTGTATGCTAAGGTG 59.458 38.462 0.00 0.00 0.00 4.00
2455 2507 5.172687 TGAACCATTGTATGCTAAGGTGA 57.827 39.130 0.00 0.00 0.00 4.02
2466 2518 3.107601 TGCTAAGGTGAGCTTACTCCAT 58.892 45.455 8.70 0.00 42.74 3.41
2467 2519 3.519510 TGCTAAGGTGAGCTTACTCCATT 59.480 43.478 8.70 2.11 42.74 3.16
2550 2602 4.918037 GCAAATTGTTCCATTGTTTTGCA 58.082 34.783 11.94 0.00 44.97 4.08
2552 2604 5.399892 GCAAATTGTTCCATTGTTTTGCATG 59.600 36.000 11.94 0.00 44.97 4.06
2561 2613 4.211794 CCATTGTTTTGCATGGTTTCAGAC 59.788 41.667 0.00 0.00 0.00 3.51
2572 2624 5.562917 CATGGTTTCAGACGTATGACATTG 58.437 41.667 13.34 3.19 0.00 2.82
2573 2625 4.637276 TGGTTTCAGACGTATGACATTGT 58.363 39.130 13.34 0.00 0.00 2.71
2574 2626 5.785243 TGGTTTCAGACGTATGACATTGTA 58.215 37.500 13.34 0.00 0.00 2.41
2575 2627 5.636121 TGGTTTCAGACGTATGACATTGTAC 59.364 40.000 13.34 4.60 0.00 2.90
2576 2628 5.636121 GGTTTCAGACGTATGACATTGTACA 59.364 40.000 13.34 0.00 0.00 2.90
2577 2629 6.312918 GGTTTCAGACGTATGACATTGTACAT 59.687 38.462 13.34 0.00 0.00 2.29
2578 2630 7.148474 GGTTTCAGACGTATGACATTGTACATT 60.148 37.037 13.34 0.00 0.00 2.71
2619 2671 4.219033 GTTGATGGTGTTGCTAAAGAACG 58.781 43.478 0.00 0.00 0.00 3.95
2620 2672 3.734463 TGATGGTGTTGCTAAAGAACGA 58.266 40.909 0.00 0.00 0.00 3.85
2635 2687 2.293399 AGAACGAACCAGTGAAAATGCC 59.707 45.455 0.00 0.00 0.00 4.40
2640 2692 0.537143 ACCAGTGAAAATGCCGCTGA 60.537 50.000 0.00 0.00 42.89 4.26
2665 3044 5.066593 GGGGAGATTCAGATGGTATGAAAC 58.933 45.833 0.00 0.00 39.92 2.78
2688 3067 5.006386 CCAAAGATTGCACTTCCTCTTAGT 58.994 41.667 0.00 0.00 0.00 2.24
2714 3093 5.069318 TCACCATTCTGATGTGCTGTTAAA 58.931 37.500 0.00 0.00 0.00 1.52
2717 3096 5.536161 ACCATTCTGATGTGCTGTTAAACTT 59.464 36.000 0.00 0.00 0.00 2.66
2753 3132 3.359950 GAGTCCCAGATTTTTGGCTCAT 58.640 45.455 0.00 0.00 36.88 2.90
2772 3151 6.238429 GGCTCATTGCTTTGAAAACAAATGAA 60.238 34.615 0.00 0.00 42.39 2.57
2776 3155 7.548427 TCATTGCTTTGAAAACAAATGAAGTGA 59.452 29.630 0.00 0.00 0.00 3.41
2805 3184 5.163405 TGAGGAGGTAATTCATAGTGTGCTC 60.163 44.000 0.00 0.00 0.00 4.26
2811 3190 8.668510 AGGTAATTCATAGTGTGCTCTATTTG 57.331 34.615 0.00 0.00 0.00 2.32
2884 3263 6.656632 AATTCTAGATCCAAGAGCGTGATA 57.343 37.500 0.00 0.00 0.00 2.15
3024 3403 0.687354 AGTTGCACAACCTCTCCGAT 59.313 50.000 9.82 0.00 42.06 4.18
3045 3424 2.584391 GGTGGTGTCTCGCTTCCCT 61.584 63.158 0.00 0.00 0.00 4.20
3090 3500 1.966451 CGCCCTGTTTTCTCGGCTT 60.966 57.895 0.00 0.00 39.34 4.35
3265 3808 1.004044 AGCAACTGCAGCTCCAAGTAT 59.996 47.619 15.27 0.00 45.16 2.12
3369 3930 4.024893 ACTGCAAACATTGACGTAAGAGTG 60.025 41.667 0.00 0.00 43.62 3.51
3394 3956 1.810151 CGTGGGTGTTGTCCTTATTGG 59.190 52.381 0.00 0.00 37.10 3.16
3550 4117 7.062605 CGGGATTTATAATGCTGATCAAAATGC 59.937 37.037 8.81 8.81 0.00 3.56
3682 4255 8.885494 AACTGCACATTTAAATTTAAGCTTCA 57.115 26.923 0.00 0.00 0.00 3.02
3782 4359 9.778741 AGTCTGAGTTTCATTCAGTTATTTGTA 57.221 29.630 2.57 0.00 42.11 2.41
3853 4430 5.750650 CAGTGCATATTCGCATTGTATCAA 58.249 37.500 0.00 0.00 45.26 2.57
3868 4447 7.283127 GCATTGTATCAAAATCTTAGTCCCTGA 59.717 37.037 0.00 0.00 0.00 3.86
3869 4448 8.834465 CATTGTATCAAAATCTTAGTCCCTGAG 58.166 37.037 0.00 0.00 0.00 3.35
3899 4478 5.131594 TCATCTGAGATTATGCTTCCTCG 57.868 43.478 0.00 0.00 0.00 4.63
3946 4525 3.132289 CCTTGCTGATGCTCATTTCCATT 59.868 43.478 0.00 0.00 40.48 3.16
3973 4552 4.023365 GCAGGATAATGAGATGTTGAAGCC 60.023 45.833 0.00 0.00 0.00 4.35
4022 4601 2.988493 CAATTGCACCGTTCCATTGAAG 59.012 45.455 0.00 0.00 0.00 3.02
4027 4606 3.689161 TGCACCGTTCCATTGAAGATTAG 59.311 43.478 0.00 0.00 0.00 1.73
4028 4607 3.487544 GCACCGTTCCATTGAAGATTAGC 60.488 47.826 0.00 0.00 0.00 3.09
4072 4675 7.496346 TTTCTTACTATTGGAGTGAGGACAT 57.504 36.000 0.00 0.00 41.18 3.06
4124 4727 5.620738 ATGGCAACTGTGTGATAGTAGAT 57.379 39.130 0.00 0.00 37.61 1.98
4278 4894 6.867662 GGATACTAGTAGCGTTGGTACTAA 57.132 41.667 11.81 4.38 44.71 2.24
4306 4922 6.260936 AGGCGCTACTACTATTTCGTTAGTAA 59.739 38.462 7.64 0.00 34.97 2.24
4317 4933 2.217750 TCGTTAGTAATAGCGCGGGTA 58.782 47.619 8.83 0.00 0.00 3.69
4318 4934 2.032030 TCGTTAGTAATAGCGCGGGTAC 60.032 50.000 8.83 5.50 0.00 3.34
4319 4935 2.031682 CGTTAGTAATAGCGCGGGTACT 60.032 50.000 19.16 19.16 0.00 2.73
4320 4936 3.186409 CGTTAGTAATAGCGCGGGTACTA 59.814 47.826 17.60 17.60 0.00 1.82
4343 4959 1.422662 GCAGTAGCGCGGGTTTAAC 59.577 57.895 8.83 0.00 0.00 2.01
4344 4960 1.974249 GCAGTAGCGCGGGTTTAACC 61.974 60.000 8.83 5.40 37.60 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
297 323 6.323225 TCCTCCATTAGTAGTAAGTTACCTGC 59.677 42.308 9.46 0.82 0.00 4.85
299 325 7.068061 CCTCCTCCATTAGTAGTAAGTTACCT 58.932 42.308 9.46 3.53 0.00 3.08
300 326 7.065504 TCCTCCTCCATTAGTAGTAAGTTACC 58.934 42.308 9.46 0.00 0.00 2.85
305 331 5.954757 TCCTCCTCCTCCATTAGTAGTAAG 58.045 45.833 0.00 0.00 0.00 2.34
311 337 3.648739 GAACTCCTCCTCCTCCATTAGT 58.351 50.000 0.00 0.00 0.00 2.24
316 342 1.000486 CCGAACTCCTCCTCCTCCA 60.000 63.158 0.00 0.00 0.00 3.86
442 468 2.145397 TCTCCATCGCTAGTGTCCTT 57.855 50.000 2.66 0.00 0.00 3.36
443 469 1.959985 CATCTCCATCGCTAGTGTCCT 59.040 52.381 2.66 0.00 0.00 3.85
462 488 2.367202 GGCCCTCCAATCGACCTCA 61.367 63.158 0.00 0.00 0.00 3.86
540 566 5.395214 GGGGAGAGAACAGCAAAAAGAAAAA 60.395 40.000 0.00 0.00 0.00 1.94
543 569 3.222603 GGGGAGAGAACAGCAAAAAGAA 58.777 45.455 0.00 0.00 0.00 2.52
544 570 2.489073 GGGGGAGAGAACAGCAAAAAGA 60.489 50.000 0.00 0.00 0.00 2.52
545 571 1.889170 GGGGGAGAGAACAGCAAAAAG 59.111 52.381 0.00 0.00 0.00 2.27
726 754 8.542080 TCCAATTTAAACCTTAATCTCGTAGGA 58.458 33.333 0.00 0.00 33.21 2.94
761 789 0.991920 ATGGAGTGGGGTAGTTGGTG 59.008 55.000 0.00 0.00 0.00 4.17
762 790 1.286248 GATGGAGTGGGGTAGTTGGT 58.714 55.000 0.00 0.00 0.00 3.67
763 791 1.285280 TGATGGAGTGGGGTAGTTGG 58.715 55.000 0.00 0.00 0.00 3.77
764 792 2.158755 GGATGATGGAGTGGGGTAGTTG 60.159 54.545 0.00 0.00 0.00 3.16
765 793 2.127708 GGATGATGGAGTGGGGTAGTT 58.872 52.381 0.00 0.00 0.00 2.24
766 794 1.009552 TGGATGATGGAGTGGGGTAGT 59.990 52.381 0.00 0.00 0.00 2.73
767 795 1.417890 GTGGATGATGGAGTGGGGTAG 59.582 57.143 0.00 0.00 0.00 3.18
768 796 1.507140 GTGGATGATGGAGTGGGGTA 58.493 55.000 0.00 0.00 0.00 3.69
769 797 1.281925 GGTGGATGATGGAGTGGGGT 61.282 60.000 0.00 0.00 0.00 4.95
770 798 1.533711 GGTGGATGATGGAGTGGGG 59.466 63.158 0.00 0.00 0.00 4.96
771 799 1.533711 GGGTGGATGATGGAGTGGG 59.466 63.158 0.00 0.00 0.00 4.61
772 800 1.146930 CGGGTGGATGATGGAGTGG 59.853 63.158 0.00 0.00 0.00 4.00
773 801 1.524621 GCGGGTGGATGATGGAGTG 60.525 63.158 0.00 0.00 0.00 3.51
774 802 2.746375 GGCGGGTGGATGATGGAGT 61.746 63.158 0.00 0.00 0.00 3.85
775 803 2.111878 GGCGGGTGGATGATGGAG 59.888 66.667 0.00 0.00 0.00 3.86
776 804 3.488569 GGGCGGGTGGATGATGGA 61.489 66.667 0.00 0.00 0.00 3.41
777 805 4.586235 GGGGCGGGTGGATGATGG 62.586 72.222 0.00 0.00 0.00 3.51
778 806 4.586235 GGGGGCGGGTGGATGATG 62.586 72.222 0.00 0.00 0.00 3.07
785 813 2.751357 TAGAAAAACGGGGGCGGGTG 62.751 60.000 0.00 0.00 0.00 4.61
786 814 2.066700 TTAGAAAAACGGGGGCGGGT 62.067 55.000 0.00 0.00 0.00 5.28
787 815 0.894642 TTTAGAAAAACGGGGGCGGG 60.895 55.000 0.00 0.00 0.00 6.13
788 816 0.960286 TTTTAGAAAAACGGGGGCGG 59.040 50.000 0.00 0.00 0.00 6.13
789 817 2.797074 TTTTTAGAAAAACGGGGGCG 57.203 45.000 0.00 0.00 33.29 6.13
806 834 5.321102 GGGCTTGGGTGGATTTTTATTTTT 58.679 37.500 0.00 0.00 0.00 1.94
807 835 4.263727 GGGGCTTGGGTGGATTTTTATTTT 60.264 41.667 0.00 0.00 0.00 1.82
808 836 3.265737 GGGGCTTGGGTGGATTTTTATTT 59.734 43.478 0.00 0.00 0.00 1.40
809 837 2.843730 GGGGCTTGGGTGGATTTTTATT 59.156 45.455 0.00 0.00 0.00 1.40
810 838 2.477245 GGGGCTTGGGTGGATTTTTAT 58.523 47.619 0.00 0.00 0.00 1.40
811 839 1.893210 CGGGGCTTGGGTGGATTTTTA 60.893 52.381 0.00 0.00 0.00 1.52
812 840 1.191489 CGGGGCTTGGGTGGATTTTT 61.191 55.000 0.00 0.00 0.00 1.94
813 841 1.609210 CGGGGCTTGGGTGGATTTT 60.609 57.895 0.00 0.00 0.00 1.82
814 842 1.874299 ATCGGGGCTTGGGTGGATTT 61.874 55.000 0.00 0.00 0.00 2.17
815 843 2.284515 GATCGGGGCTTGGGTGGATT 62.285 60.000 0.00 0.00 0.00 3.01
816 844 2.696125 ATCGGGGCTTGGGTGGAT 60.696 61.111 0.00 0.00 0.00 3.41
817 845 3.407967 GATCGGGGCTTGGGTGGA 61.408 66.667 0.00 0.00 0.00 4.02
818 846 4.506255 GGATCGGGGCTTGGGTGG 62.506 72.222 0.00 0.00 0.00 4.61
819 847 3.704231 CTGGATCGGGGCTTGGGTG 62.704 68.421 0.00 0.00 0.00 4.61
820 848 3.411517 CTGGATCGGGGCTTGGGT 61.412 66.667 0.00 0.00 0.00 4.51
821 849 2.403132 GATCTGGATCGGGGCTTGGG 62.403 65.000 0.00 0.00 0.00 4.12
822 850 1.072159 GATCTGGATCGGGGCTTGG 59.928 63.158 0.00 0.00 0.00 3.61
823 851 1.072159 GGATCTGGATCGGGGCTTG 59.928 63.158 4.75 0.00 38.69 4.01
824 852 2.150051 GGGATCTGGATCGGGGCTT 61.150 63.158 4.75 0.00 38.69 4.35
825 853 2.527875 GGGATCTGGATCGGGGCT 60.528 66.667 4.75 0.00 38.69 5.19
826 854 3.641454 GGGGATCTGGATCGGGGC 61.641 72.222 4.75 0.00 38.69 5.80
827 855 1.915769 GAGGGGATCTGGATCGGGG 60.916 68.421 4.75 0.00 38.69 5.73
828 856 1.915769 GGAGGGGATCTGGATCGGG 60.916 68.421 4.75 0.00 38.69 5.14
829 857 1.152247 TGGAGGGGATCTGGATCGG 60.152 63.158 4.75 0.00 38.69 4.18
830 858 1.476007 GGTGGAGGGGATCTGGATCG 61.476 65.000 4.75 0.00 38.69 3.69
831 859 1.476007 CGGTGGAGGGGATCTGGATC 61.476 65.000 2.24 2.24 37.11 3.36
832 860 1.460305 CGGTGGAGGGGATCTGGAT 60.460 63.158 0.00 0.00 0.00 3.41
833 861 2.041922 CGGTGGAGGGGATCTGGA 60.042 66.667 0.00 0.00 0.00 3.86
834 862 3.866582 GCGGTGGAGGGGATCTGG 61.867 72.222 0.00 0.00 0.00 3.86
835 863 2.669133 TTGCGGTGGAGGGGATCTG 61.669 63.158 0.00 0.00 0.00 2.90
836 864 2.285368 TTGCGGTGGAGGGGATCT 60.285 61.111 0.00 0.00 0.00 2.75
837 865 2.124695 GTTGCGGTGGAGGGGATC 60.125 66.667 0.00 0.00 0.00 3.36
838 866 3.728373 GGTTGCGGTGGAGGGGAT 61.728 66.667 0.00 0.00 0.00 3.85
839 867 4.974438 AGGTTGCGGTGGAGGGGA 62.974 66.667 0.00 0.00 0.00 4.81
840 868 4.410400 GAGGTTGCGGTGGAGGGG 62.410 72.222 0.00 0.00 0.00 4.79
841 869 4.410400 GGAGGTTGCGGTGGAGGG 62.410 72.222 0.00 0.00 0.00 4.30
842 870 2.804828 GAAGGAGGTTGCGGTGGAGG 62.805 65.000 0.00 0.00 0.00 4.30
843 871 1.376037 GAAGGAGGTTGCGGTGGAG 60.376 63.158 0.00 0.00 0.00 3.86
844 872 2.747686 GAAGGAGGTTGCGGTGGA 59.252 61.111 0.00 0.00 0.00 4.02
845 873 2.359975 GGAAGGAGGTTGCGGTGG 60.360 66.667 0.00 0.00 0.00 4.61
846 874 1.966451 GTGGAAGGAGGTTGCGGTG 60.966 63.158 0.00 0.00 0.00 4.94
847 875 2.430367 GTGGAAGGAGGTTGCGGT 59.570 61.111 0.00 0.00 0.00 5.68
848 876 2.359975 GGTGGAAGGAGGTTGCGG 60.360 66.667 0.00 0.00 0.00 5.69
849 877 1.376037 GAGGTGGAAGGAGGTTGCG 60.376 63.158 0.00 0.00 0.00 4.85
850 878 1.002011 GGAGGTGGAAGGAGGTTGC 60.002 63.158 0.00 0.00 0.00 4.17
851 879 0.615850 GAGGAGGTGGAAGGAGGTTG 59.384 60.000 0.00 0.00 0.00 3.77
852 880 0.494095 AGAGGAGGTGGAAGGAGGTT 59.506 55.000 0.00 0.00 0.00 3.50
853 881 0.041982 GAGAGGAGGTGGAAGGAGGT 59.958 60.000 0.00 0.00 0.00 3.85
854 882 0.338120 AGAGAGGAGGTGGAAGGAGG 59.662 60.000 0.00 0.00 0.00 4.30
855 883 2.107366 GAAGAGAGGAGGTGGAAGGAG 58.893 57.143 0.00 0.00 0.00 3.69
856 884 1.719378 AGAAGAGAGGAGGTGGAAGGA 59.281 52.381 0.00 0.00 0.00 3.36
857 885 2.107366 GAGAAGAGAGGAGGTGGAAGG 58.893 57.143 0.00 0.00 0.00 3.46
858 886 2.107366 GGAGAAGAGAGGAGGTGGAAG 58.893 57.143 0.00 0.00 0.00 3.46
859 887 1.273324 GGGAGAAGAGAGGAGGTGGAA 60.273 57.143 0.00 0.00 0.00 3.53
860 888 0.336737 GGGAGAAGAGAGGAGGTGGA 59.663 60.000 0.00 0.00 0.00 4.02
861 889 0.041833 TGGGAGAAGAGAGGAGGTGG 59.958 60.000 0.00 0.00 0.00 4.61
862 890 1.944177 TTGGGAGAAGAGAGGAGGTG 58.056 55.000 0.00 0.00 0.00 4.00
863 891 2.628290 GGATTGGGAGAAGAGAGGAGGT 60.628 54.545 0.00 0.00 0.00 3.85
864 892 2.046292 GGATTGGGAGAAGAGAGGAGG 58.954 57.143 0.00 0.00 0.00 4.30
865 893 1.686052 CGGATTGGGAGAAGAGAGGAG 59.314 57.143 0.00 0.00 0.00 3.69
866 894 1.781786 CGGATTGGGAGAAGAGAGGA 58.218 55.000 0.00 0.00 0.00 3.71
867 895 0.105778 GCGGATTGGGAGAAGAGAGG 59.894 60.000 0.00 0.00 0.00 3.69
868 896 1.118838 AGCGGATTGGGAGAAGAGAG 58.881 55.000 0.00 0.00 0.00 3.20
869 897 0.826715 CAGCGGATTGGGAGAAGAGA 59.173 55.000 0.00 0.00 0.00 3.10
870 898 0.813210 GCAGCGGATTGGGAGAAGAG 60.813 60.000 0.00 0.00 0.00 2.85
871 899 1.221840 GCAGCGGATTGGGAGAAGA 59.778 57.895 0.00 0.00 0.00 2.87
872 900 1.078214 TGCAGCGGATTGGGAGAAG 60.078 57.895 0.00 0.00 0.00 2.85
873 901 1.078214 CTGCAGCGGATTGGGAGAA 60.078 57.895 0.00 0.00 0.00 2.87
874 902 2.586245 CTGCAGCGGATTGGGAGA 59.414 61.111 0.00 0.00 0.00 3.71
875 903 3.207669 GCTGCAGCGGATTGGGAG 61.208 66.667 25.23 0.00 0.00 4.30
876 904 4.802051 GGCTGCAGCGGATTGGGA 62.802 66.667 31.19 0.00 43.26 4.37
912 940 4.733725 TCGGAGGGGGTTGGAGGG 62.734 72.222 0.00 0.00 0.00 4.30
913 941 3.400054 GTCGGAGGGGGTTGGAGG 61.400 72.222 0.00 0.00 0.00 4.30
914 942 3.400054 GGTCGGAGGGGGTTGGAG 61.400 72.222 0.00 0.00 0.00 3.86
959 987 3.798511 GAGGGGTAGGGCAGCACC 61.799 72.222 0.00 0.00 37.93 5.01
960 988 3.798511 GGAGGGGTAGGGCAGCAC 61.799 72.222 0.00 0.00 0.00 4.40
962 990 4.825679 AGGGAGGGGTAGGGCAGC 62.826 72.222 0.00 0.00 0.00 5.25
963 991 2.446802 GAGGGAGGGGTAGGGCAG 60.447 72.222 0.00 0.00 0.00 4.85
964 992 4.103928 GGAGGGAGGGGTAGGGCA 62.104 72.222 0.00 0.00 0.00 5.36
965 993 2.934876 AATGGAGGGAGGGGTAGGGC 62.935 65.000 0.00 0.00 0.00 5.19
966 994 0.328548 AAATGGAGGGAGGGGTAGGG 60.329 60.000 0.00 0.00 0.00 3.53
967 995 1.141185 GAAATGGAGGGAGGGGTAGG 58.859 60.000 0.00 0.00 0.00 3.18
968 996 1.141185 GGAAATGGAGGGAGGGGTAG 58.859 60.000 0.00 0.00 0.00 3.18
969 997 0.728843 AGGAAATGGAGGGAGGGGTA 59.271 55.000 0.00 0.00 0.00 3.69
970 998 0.921256 CAGGAAATGGAGGGAGGGGT 60.921 60.000 0.00 0.00 0.00 4.95
971 999 1.925888 CAGGAAATGGAGGGAGGGG 59.074 63.158 0.00 0.00 0.00 4.79
972 1000 1.228510 GCAGGAAATGGAGGGAGGG 59.771 63.158 0.00 0.00 0.00 4.30
973 1001 1.228510 GGCAGGAAATGGAGGGAGG 59.771 63.158 0.00 0.00 0.00 4.30
974 1002 1.228510 GGGCAGGAAATGGAGGGAG 59.771 63.158 0.00 0.00 0.00 4.30
975 1003 2.679342 CGGGCAGGAAATGGAGGGA 61.679 63.158 0.00 0.00 0.00 4.20
976 1004 2.124151 CGGGCAGGAAATGGAGGG 60.124 66.667 0.00 0.00 0.00 4.30
977 1005 1.153086 CTCGGGCAGGAAATGGAGG 60.153 63.158 0.00 0.00 0.00 4.30
978 1006 4.547859 CTCGGGCAGGAAATGGAG 57.452 61.111 0.00 0.00 0.00 3.86
1051 1079 0.033601 AACGGAAATGGGCATGCCTA 60.034 50.000 34.70 30.78 36.10 3.93
1101 1130 2.034066 ACCAACCATCACAGCCCG 59.966 61.111 0.00 0.00 0.00 6.13
1136 1165 1.595382 GATGAGCAGCCGCGGTAAT 60.595 57.895 28.70 10.69 45.49 1.89
1154 1183 2.606725 GCAGTCAAATCAGATCGGACAG 59.393 50.000 13.92 8.84 0.00 3.51
1156 1185 2.606725 CTGCAGTCAAATCAGATCGGAC 59.393 50.000 5.25 6.37 0.00 4.79
1210 1239 3.029564 GAGCGACTCGAGCACGTCT 62.030 63.158 25.31 22.34 40.69 4.18
1281 1310 4.821532 ATTTAAAGGCATGGGAGATCCT 57.178 40.909 0.00 0.00 36.20 3.24
1285 1314 5.719085 TGCTAAAATTTAAAGGCATGGGAGA 59.281 36.000 0.00 0.00 0.00 3.71
1286 1315 5.976458 TGCTAAAATTTAAAGGCATGGGAG 58.024 37.500 0.00 0.00 0.00 4.30
1289 1318 8.392612 CAGAAATGCTAAAATTTAAAGGCATGG 58.607 33.333 15.58 7.20 39.78 3.66
1290 1319 7.906527 GCAGAAATGCTAAAATTTAAAGGCATG 59.093 33.333 15.58 9.39 39.78 4.06
1291 1320 7.825761 AGCAGAAATGCTAAAATTTAAAGGCAT 59.174 29.630 0.00 11.58 44.28 4.40
1292 1321 7.118101 CAGCAGAAATGCTAAAATTTAAAGGCA 59.882 33.333 1.86 8.81 44.30 4.75
1293 1322 7.458677 CAGCAGAAATGCTAAAATTTAAAGGC 58.541 34.615 1.86 0.00 44.30 4.35
1312 1344 0.890542 AGCAAACCAATCGCAGCAGA 60.891 50.000 0.00 0.00 0.00 4.26
1316 1348 1.904144 CATCAGCAAACCAATCGCAG 58.096 50.000 0.00 0.00 0.00 5.18
1396 1428 6.765512 TCAATCGATTGCACCTGATACAAATA 59.234 34.615 29.32 7.04 37.68 1.40
1405 1437 4.100707 ACAAATCAATCGATTGCACCTG 57.899 40.909 29.32 23.32 41.12 4.00
1414 1446 8.889717 GGAATTTAGTCCTTACAAATCAATCGA 58.110 33.333 0.00 0.00 34.56 3.59
1415 1447 8.893727 AGGAATTTAGTCCTTACAAATCAATCG 58.106 33.333 0.00 0.00 46.42 3.34
1512 1546 8.708742 CACAACTAATCAACTAGAAATCGTGAA 58.291 33.333 0.00 0.00 0.00 3.18
1524 1558 5.182001 GCCTGATCAACACAACTAATCAACT 59.818 40.000 0.00 0.00 0.00 3.16
1532 1566 4.357918 AACTAGCCTGATCAACACAACT 57.642 40.909 0.00 0.00 0.00 3.16
1563 1597 4.841443 ACCGAATAGTTTTGTTTCCACC 57.159 40.909 0.00 0.00 0.00 4.61
1564 1598 5.009310 AGGAACCGAATAGTTTTGTTTCCAC 59.991 40.000 5.43 0.00 39.26 4.02
1572 1606 3.492337 TGGCAAGGAACCGAATAGTTTT 58.508 40.909 0.00 0.00 0.00 2.43
1603 1637 6.095860 TCTGCCAAAGAATAACATCCATCTTG 59.904 38.462 0.00 0.00 32.72 3.02
1629 1663 9.831054 GACTAATCTACAAAACGATGTATTTCG 57.169 33.333 0.00 0.00 44.56 3.46
1654 1692 6.127338 CCTCACTCATCAACACATAAGTAGGA 60.127 42.308 0.00 0.00 0.00 2.94
1705 1743 4.330894 GGCTTATTCTGTGTTTACCGTACC 59.669 45.833 0.00 0.00 0.00 3.34
1707 1745 5.149973 TGGCTTATTCTGTGTTTACCGTA 57.850 39.130 0.00 0.00 0.00 4.02
1745 1784 1.610522 CTCCACAACTGCCTTTTCAGG 59.389 52.381 0.00 0.00 44.28 3.86
1770 1809 8.075574 CAGCAGTATAATGTCTCTCTTCAGTAG 58.924 40.741 1.67 0.00 0.00 2.57
1778 1817 4.327982 TGGCAGCAGTATAATGTCTCTC 57.672 45.455 1.67 0.00 0.00 3.20
1790 1829 3.303938 AGTAGATACTCATGGCAGCAGT 58.696 45.455 6.39 6.39 0.00 4.40
1824 1870 3.283259 AATTCTAGGCTGTAGGCAACC 57.717 47.619 8.22 0.00 44.01 3.77
1860 1906 6.005823 TCAGATGTTGTTCAGGTCAAATGAT 58.994 36.000 0.00 0.00 0.00 2.45
1862 1908 5.694231 TCAGATGTTGTTCAGGTCAAATG 57.306 39.130 0.00 0.00 0.00 2.32
1863 1909 6.906157 ATTCAGATGTTGTTCAGGTCAAAT 57.094 33.333 0.00 0.00 0.00 2.32
1871 1917 4.933505 TGGCAAATTCAGATGTTGTTCA 57.066 36.364 0.00 0.00 0.00 3.18
1933 1980 1.805945 GCTGTTACGACGAGGCAGG 60.806 63.158 0.00 0.00 0.00 4.85
1943 1990 0.949105 AAGCTTGGGTCGCTGTTACG 60.949 55.000 0.00 0.00 37.87 3.18
1948 1995 1.234821 TACAAAAGCTTGGGTCGCTG 58.765 50.000 0.00 0.00 37.87 5.18
1974 2021 2.284190 CAAACTCCTAGCAAGCCTAGC 58.716 52.381 0.00 0.00 41.87 3.42
1975 2022 3.618690 ACAAACTCCTAGCAAGCCTAG 57.381 47.619 0.00 0.00 42.68 3.02
1976 2023 4.367039 AAACAAACTCCTAGCAAGCCTA 57.633 40.909 0.00 0.00 0.00 3.93
1981 2028 6.293955 GCAGACATAAAACAAACTCCTAGCAA 60.294 38.462 0.00 0.00 0.00 3.91
1983 2030 5.181245 TGCAGACATAAAACAAACTCCTAGC 59.819 40.000 0.00 0.00 0.00 3.42
2037 2084 9.234384 GAATCATTTGATCTTGCATCTTAACAG 57.766 33.333 0.00 0.00 32.75 3.16
2038 2085 8.741841 TGAATCATTTGATCTTGCATCTTAACA 58.258 29.630 0.00 0.00 32.75 2.41
2050 2097 7.530010 CCAACGTAACTTGAATCATTTGATCT 58.470 34.615 0.00 0.00 32.75 2.75
2066 2113 3.302156 GCAACAAACAATGCCAACGTAAC 60.302 43.478 0.00 0.00 36.56 2.50
2067 2114 2.860735 GCAACAAACAATGCCAACGTAA 59.139 40.909 0.00 0.00 36.56 3.18
2070 2117 1.569708 AGCAACAAACAATGCCAACG 58.430 45.000 0.00 0.00 43.57 4.10
2074 2121 2.437200 TGCTAGCAACAAACAATGCC 57.563 45.000 16.84 0.00 43.57 4.40
2080 2127 7.305474 AGTTGTTATACATGCTAGCAACAAAC 58.695 34.615 24.54 20.87 40.59 2.93
2085 2132 6.370442 ACGAAAGTTGTTATACATGCTAGCAA 59.630 34.615 23.54 5.64 46.40 3.91
2114 2161 6.927294 ATATGTAGCTTGTCTAAAGTTGGC 57.073 37.500 0.00 0.00 0.00 4.52
2185 2233 3.782889 ACAGGACAAACTTGAAGCAAC 57.217 42.857 0.00 0.00 0.00 4.17
2264 2314 8.341892 ACGCAAGATATTGATCTACTCTGATA 57.658 34.615 3.77 0.00 41.87 2.15
2281 2332 7.316544 ACGAAATAGGAAATTTACGCAAGAT 57.683 32.000 0.00 0.00 43.62 2.40
2304 2355 3.509575 TGGGGCAACAAAGATCATACAAC 59.490 43.478 0.00 0.00 39.74 3.32
2314 2365 1.986882 AGTTCTCTGGGGCAACAAAG 58.013 50.000 0.00 0.00 39.74 2.77
2317 2369 1.771854 TGTTAGTTCTCTGGGGCAACA 59.228 47.619 0.00 0.00 39.74 3.33
2344 2396 7.666623 TCATGTTGACTCTGAAGTATTACACA 58.333 34.615 0.00 0.00 35.28 3.72
2361 2413 3.118665 TCGCCTCAATCTCATCATGTTGA 60.119 43.478 6.32 6.32 0.00 3.18
2423 2475 5.506317 GCATACAATGGTTCATACAGCTTCC 60.506 44.000 0.00 0.00 0.00 3.46
2454 2506 7.971455 ACGTTATAAACAAATGGAGTAAGCTC 58.029 34.615 0.00 0.00 40.93 4.09
2455 2507 7.916914 ACGTTATAAACAAATGGAGTAAGCT 57.083 32.000 0.00 0.00 0.00 3.74
2512 2564 6.767456 ACAATTTGCACATAAGGAAATGGAA 58.233 32.000 2.89 0.00 39.13 3.53
2550 2602 5.245531 ACAATGTCATACGTCTGAAACCAT 58.754 37.500 5.07 2.83 0.00 3.55
2552 2604 5.636121 TGTACAATGTCATACGTCTGAAACC 59.364 40.000 5.07 0.00 0.00 3.27
2561 2613 8.608317 TCCATTTACAATGTACAATGTCATACG 58.392 33.333 19.59 6.88 0.00 3.06
2572 2624 6.128007 CCTCCACAACTCCATTTACAATGTAC 60.128 42.308 0.00 0.00 0.00 2.90
2573 2625 5.943416 CCTCCACAACTCCATTTACAATGTA 59.057 40.000 0.00 0.00 0.00 2.29
2574 2626 4.766891 CCTCCACAACTCCATTTACAATGT 59.233 41.667 0.00 0.00 0.00 2.71
2575 2627 4.766891 ACCTCCACAACTCCATTTACAATG 59.233 41.667 0.00 0.00 0.00 2.82
2576 2628 4.998051 ACCTCCACAACTCCATTTACAAT 58.002 39.130 0.00 0.00 0.00 2.71
2577 2629 4.447138 ACCTCCACAACTCCATTTACAA 57.553 40.909 0.00 0.00 0.00 2.41
2578 2630 4.141287 CAACCTCCACAACTCCATTTACA 58.859 43.478 0.00 0.00 0.00 2.41
2619 2671 0.598065 AGCGGCATTTTCACTGGTTC 59.402 50.000 1.45 0.00 0.00 3.62
2620 2672 0.314935 CAGCGGCATTTTCACTGGTT 59.685 50.000 1.45 0.00 0.00 3.67
2635 2687 1.045350 TCTGAATCTCCCCCTCAGCG 61.045 60.000 0.00 0.00 37.17 5.18
2640 2692 3.116199 TCATACCATCTGAATCTCCCCCT 60.116 47.826 0.00 0.00 0.00 4.79
2665 3044 5.006386 ACTAAGAGGAAGTGCAATCTTTGG 58.994 41.667 0.00 0.00 34.08 3.28
2671 3050 5.181748 GTGATCACTAAGAGGAAGTGCAAT 58.818 41.667 18.83 0.00 43.30 3.56
2723 3102 6.180472 CAAAAATCTGGGACTCCTTTAGCTA 58.820 40.000 0.00 0.00 0.00 3.32
2772 3151 5.026121 TGAATTACCTCCTCAGTCATCACT 58.974 41.667 0.00 0.00 0.00 3.41
2776 3155 6.613271 ACACTATGAATTACCTCCTCAGTCAT 59.387 38.462 0.00 0.00 0.00 3.06
2805 3184 7.065923 GGGAGCTAAAAGAACACCTACAAATAG 59.934 40.741 0.00 0.00 0.00 1.73
2811 3190 4.554960 AGGGAGCTAAAAGAACACCTAC 57.445 45.455 0.00 0.00 0.00 3.18
2884 3263 8.650143 TCCTTTAGATATTTCAAAACAGGCTT 57.350 30.769 0.00 0.00 0.00 4.35
2943 3322 0.318699 GGGCGGTCAAAAGCTTGAAC 60.319 55.000 0.00 0.00 44.54 3.18
3024 3403 0.606604 GGAAGCGAGACACCACCTTA 59.393 55.000 0.00 0.00 0.00 2.69
3090 3500 2.232399 TCAAGCAAGCAAGCAATGAGA 58.768 42.857 3.19 0.00 36.85 3.27
3265 3808 4.469586 TCCAGACATGCATTTACTGACCTA 59.530 41.667 19.56 5.85 0.00 3.08
3369 3930 0.107268 AGGACAACACCCACGGTAAC 59.893 55.000 0.00 0.00 32.11 2.50
3394 3956 8.738645 ACTTCACTATGGATTGGATAAAGAAC 57.261 34.615 0.00 0.00 0.00 3.01
3457 4019 4.487714 AACACTGGACAGAACAGAAAGA 57.512 40.909 6.29 0.00 39.24 2.52
3590 4158 2.094545 GTCAATTGGCGCAGGATTTTCT 60.095 45.455 10.83 0.00 0.00 2.52
3631 4203 1.000955 ACGAGCACCTACCAACTGAAG 59.999 52.381 0.00 0.00 0.00 3.02
3853 4430 4.430441 ACAGGACTCAGGGACTAAGATTT 58.570 43.478 0.00 0.00 36.02 2.17
3868 4447 6.725369 AGCATAATCTCAGATGATACAGGACT 59.275 38.462 0.00 0.00 0.00 3.85
3869 4448 6.934056 AGCATAATCTCAGATGATACAGGAC 58.066 40.000 0.00 0.00 0.00 3.85
3946 4525 3.851458 ACATCTCATTATCCTGCAGCA 57.149 42.857 8.66 0.00 0.00 4.41
3973 4552 2.159128 AGTCTCATGGATTCACTCTGCG 60.159 50.000 0.00 0.00 0.00 5.18
4072 4675 7.896811 ACTATCACACAGTTTCTCATTCTACA 58.103 34.615 0.00 0.00 0.00 2.74
4124 4727 7.939039 GTGATGGAAATGTCCTTATTCCTGATA 59.061 37.037 2.89 0.00 45.22 2.15
4227 4837 3.933332 ACTAGTAGCGCTCAATTTGTTCC 59.067 43.478 16.34 0.00 0.00 3.62
4229 4839 7.611213 AAATACTAGTAGCGCTCAATTTGTT 57.389 32.000 16.34 0.00 0.00 2.83
4230 4840 7.438459 CCTAAATACTAGTAGCGCTCAATTTGT 59.562 37.037 16.34 9.52 0.00 2.83
4231 4841 7.652105 TCCTAAATACTAGTAGCGCTCAATTTG 59.348 37.037 16.34 3.11 0.00 2.32
4238 4853 8.721019 CTAGTATCCTAAATACTAGTAGCGCT 57.279 38.462 17.26 17.26 44.31 5.92
4275 4891 5.852229 CGAAATAGTAGTAGCGCCTCTTTAG 59.148 44.000 2.29 0.00 0.00 1.85
4278 4894 3.631227 ACGAAATAGTAGTAGCGCCTCTT 59.369 43.478 2.29 0.00 0.00 2.85
4306 4922 2.559668 TGCTATTTAGTACCCGCGCTAT 59.440 45.455 5.56 0.00 0.00 2.97
4317 4933 1.269621 CCCGCGCTACTGCTATTTAGT 60.270 52.381 5.56 0.00 36.97 2.24
4318 4934 1.269621 ACCCGCGCTACTGCTATTTAG 60.270 52.381 5.56 0.00 36.97 1.85
4319 4935 0.748450 ACCCGCGCTACTGCTATTTA 59.252 50.000 5.56 0.00 36.97 1.40
4320 4936 0.107848 AACCCGCGCTACTGCTATTT 60.108 50.000 5.56 0.00 36.97 1.40
4339 4955 7.645058 AATAGTTAGTAGTAGCGTGGGTTAA 57.355 36.000 0.00 0.00 0.00 2.01
4340 4956 7.041098 GCTAATAGTTAGTAGTAGCGTGGGTTA 60.041 40.741 10.17 0.00 43.41 2.85
4341 4957 6.238869 GCTAATAGTTAGTAGTAGCGTGGGTT 60.239 42.308 10.17 0.00 43.41 4.11
4343 4959 5.697826 GCTAATAGTTAGTAGTAGCGTGGG 58.302 45.833 10.17 0.00 43.41 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.