Multiple sequence alignment - TraesCS3A01G356700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G356700 chr3A 100.000 4347 0 0 1 4347 604346745 604342399 0.000000e+00 8028.0
1 TraesCS3A01G356700 chr3B 88.347 2214 124 56 716 2864 612809763 612807619 0.000000e+00 2536.0
2 TraesCS3A01G356700 chr3B 82.901 655 45 28 2948 3553 612807461 612806825 1.070000e-145 527.0
3 TraesCS3A01G356700 chr3B 82.918 562 51 32 3642 4175 612805281 612804737 8.520000e-127 464.0
4 TraesCS3A01G356700 chr3B 84.000 375 20 17 329 692 612810197 612809852 1.510000e-84 324.0
5 TraesCS3A01G356700 chr3B 93.377 151 6 3 141 291 612810348 612810202 2.040000e-53 220.0
6 TraesCS3A01G356700 chr3B 92.308 78 3 2 41 118 612810478 612810404 1.650000e-19 108.0
7 TraesCS3A01G356700 chr3B 100.000 28 0 0 3593 3620 612805301 612805274 8.000000e-03 52.8
8 TraesCS3A01G356700 chr3D 92.196 1307 59 15 1543 2845 461957146 461955879 0.000000e+00 1808.0
9 TraesCS3A01G356700 chr3D 90.827 665 36 19 42 695 461958697 461958047 0.000000e+00 867.0
10 TraesCS3A01G356700 chr3D 84.950 897 55 33 2948 3787 461955566 461954693 0.000000e+00 835.0
11 TraesCS3A01G356700 chr3D 87.583 749 46 14 716 1427 461957956 461957218 0.000000e+00 824.0
12 TraesCS3A01G356700 chr3D 85.714 63 5 3 4023 4082 461953615 461953554 3.630000e-06 63.9
13 TraesCS3A01G356700 chr6A 92.486 173 11 2 4175 4346 531510090 531509919 3.360000e-61 246.0
14 TraesCS3A01G356700 chr2A 91.860 172 13 1 4176 4346 696848529 696848358 5.620000e-59 239.0
15 TraesCS3A01G356700 chr2A 88.889 180 19 1 4168 4346 768684049 768684228 2.040000e-53 220.0
16 TraesCS3A01G356700 chr5D 90.751 173 15 1 4175 4346 170318937 170318765 3.380000e-56 230.0
17 TraesCS3A01G356700 chr4D 91.176 170 14 1 4177 4345 95530205 95530036 3.380000e-56 230.0
18 TraesCS3A01G356700 chr4D 87.302 189 23 1 4159 4346 383876473 383876661 9.470000e-52 215.0
19 TraesCS3A01G356700 chr7D 90.286 175 15 2 4174 4346 578505624 578505450 1.220000e-55 228.0
20 TraesCS3A01G356700 chr7D 88.083 193 20 3 4155 4346 31600650 31600460 4.370000e-55 226.0
21 TraesCS3A01G356700 chr7D 93.333 45 3 0 3931 3975 551657796 551657840 2.810000e-07 67.6
22 TraesCS3A01G356700 chr1D 90.698 172 15 1 4176 4346 425577877 425578048 1.220000e-55 228.0
23 TraesCS3A01G356700 chr2B 91.304 46 3 1 3931 3975 90647901 90647856 1.310000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G356700 chr3A 604342399 604346745 4346 True 8028.000000 8028 100.000000 1 4347 1 chr3A.!!$R1 4346
1 TraesCS3A01G356700 chr3B 612804737 612810478 5741 True 604.542857 2536 89.121571 41 4175 7 chr3B.!!$R1 4134
2 TraesCS3A01G356700 chr3D 461953554 461958697 5143 True 879.580000 1808 88.254000 42 4082 5 chr3D.!!$R1 4040

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.108138 AATTGTCCGCTTCTCTCCCG 60.108 55.0 0.00 0.00 0.00 5.14 F
1529 1737 0.311790 CTGCTGATTTGCGGTGTTGT 59.688 50.0 0.00 0.00 34.82 3.32 F
2564 2790 0.035247 CGAAAATTCCACCGGGGGTA 60.035 55.0 25.56 15.41 37.22 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1539 1747 0.104855 CCTGTAGCTCCTGCGCATTA 59.895 55.0 12.24 0.01 45.42 1.90 R
2810 3036 0.247460 CGGGCTCATGTCTCTGAACA 59.753 55.0 0.00 0.00 0.00 3.18 R
4223 7160 0.030235 CGTCACTTGTCACGACCTGA 59.970 55.0 0.00 0.00 38.32 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.534723 TGGCTCGGATTAGTATACTAATTGT 57.465 36.000 29.92 15.73 46.07 2.71
25 26 7.600065 TGGCTCGGATTAGTATACTAATTGTC 58.400 38.462 29.92 21.36 46.07 3.18
26 27 7.034397 GGCTCGGATTAGTATACTAATTGTCC 58.966 42.308 29.92 26.18 46.07 4.02
28 29 6.866179 CGGATTAGTATACTAATTGTCCGC 57.134 41.667 32.66 22.06 46.07 5.54
29 30 6.618811 CGGATTAGTATACTAATTGTCCGCT 58.381 40.000 32.66 17.06 46.07 5.52
30 31 7.088905 CGGATTAGTATACTAATTGTCCGCTT 58.911 38.462 32.66 16.52 46.07 4.68
31 32 7.272948 CGGATTAGTATACTAATTGTCCGCTTC 59.727 40.741 32.66 21.38 46.07 3.86
32 33 8.305317 GGATTAGTATACTAATTGTCCGCTTCT 58.695 37.037 29.92 11.64 46.07 2.85
33 34 9.344309 GATTAGTATACTAATTGTCCGCTTCTC 57.656 37.037 29.92 15.47 46.07 2.87
34 35 6.963083 AGTATACTAATTGTCCGCTTCTCT 57.037 37.500 2.75 0.00 0.00 3.10
35 36 6.972722 AGTATACTAATTGTCCGCTTCTCTC 58.027 40.000 2.75 0.00 0.00 3.20
36 37 3.528597 ACTAATTGTCCGCTTCTCTCC 57.471 47.619 0.00 0.00 0.00 3.71
37 38 2.168728 ACTAATTGTCCGCTTCTCTCCC 59.831 50.000 0.00 0.00 0.00 4.30
38 39 0.108138 AATTGTCCGCTTCTCTCCCG 60.108 55.000 0.00 0.00 0.00 5.14
39 40 1.258445 ATTGTCCGCTTCTCTCCCGT 61.258 55.000 0.00 0.00 0.00 5.28
55 56 1.553690 CCGTGGACAGGACAGGGATT 61.554 60.000 0.00 0.00 44.45 3.01
88 89 1.216122 GCACGCAAATGCTTCCAAAA 58.784 45.000 3.63 0.00 42.62 2.44
89 90 1.799994 GCACGCAAATGCTTCCAAAAT 59.200 42.857 3.63 0.00 42.62 1.82
118 128 6.840780 ACTACTAGCAATTTGCCAGAAAAT 57.159 33.333 21.20 3.82 46.52 1.82
119 129 6.624423 ACTACTAGCAATTTGCCAGAAAATG 58.376 36.000 21.20 9.57 46.52 2.32
127 137 6.619874 GCAATTTGCCAGAAAATGAGACAATG 60.620 38.462 10.34 0.00 37.42 2.82
130 140 5.125100 TGCCAGAAAATGAGACAATGAAC 57.875 39.130 0.00 0.00 0.00 3.18
131 141 4.022068 TGCCAGAAAATGAGACAATGAACC 60.022 41.667 0.00 0.00 0.00 3.62
132 142 4.619160 GCCAGAAAATGAGACAATGAACCC 60.619 45.833 0.00 0.00 0.00 4.11
133 143 4.523943 CCAGAAAATGAGACAATGAACCCA 59.476 41.667 0.00 0.00 0.00 4.51
170 213 2.668212 GGCAACGGCAGTGTAGCA 60.668 61.111 10.44 0.00 43.71 3.49
299 342 7.189512 GCTAATCCACTAATCAACACACAATC 58.810 38.462 0.00 0.00 0.00 2.67
311 354 3.959943 ACACACAATCCGCTTTGTTTAC 58.040 40.909 0.00 0.00 37.73 2.01
320 363 1.776174 CGCTTTGTTTACGACGTACGC 60.776 52.381 16.72 7.41 46.94 4.42
321 364 1.189884 GCTTTGTTTACGACGTACGCA 59.810 47.619 16.72 6.89 46.94 5.24
322 365 2.802979 CTTTGTTTACGACGTACGCAC 58.197 47.619 16.72 9.08 46.94 5.34
442 492 0.831307 GGGCCTCGATAGTCAAACCT 59.169 55.000 0.84 0.00 37.40 3.50
444 494 2.280628 GGCCTCGATAGTCAAACCTTG 58.719 52.381 0.00 0.00 37.40 3.61
485 537 4.712425 CGCCAAAGCAGCTGCCAC 62.712 66.667 34.39 17.98 43.38 5.01
544 597 6.512514 TTAACACCCACCTTAAGTCCTTAA 57.487 37.500 0.97 0.01 34.28 1.85
546 599 3.717913 ACACCCACCTTAAGTCCTTAACA 59.282 43.478 0.97 0.00 32.26 2.41
552 605 5.365619 CACCTTAAGTCCTTAACACACTGT 58.634 41.667 0.97 0.00 32.26 3.55
563 616 5.276868 CCTTAACACACTGTTCTCAAAGTCG 60.277 44.000 0.00 0.00 40.22 4.18
574 627 1.228124 CAAAGTCGCCTCCAACCCA 60.228 57.895 0.00 0.00 0.00 4.51
616 669 6.476378 AGTCAACAGTGCCACTAATTAATCT 58.524 36.000 0.00 0.00 0.00 2.40
618 671 6.371548 GTCAACAGTGCCACTAATTAATCTCA 59.628 38.462 0.00 0.00 0.00 3.27
621 674 6.476378 ACAGTGCCACTAATTAATCTCAAGT 58.524 36.000 0.00 0.00 0.00 3.16
622 675 7.620880 ACAGTGCCACTAATTAATCTCAAGTA 58.379 34.615 0.00 0.00 0.00 2.24
623 676 7.549488 ACAGTGCCACTAATTAATCTCAAGTAC 59.451 37.037 0.00 0.00 0.00 2.73
660 713 5.256474 ACAATCCTCCATACAAAGTGGAAG 58.744 41.667 0.00 0.00 44.69 3.46
664 717 3.826157 CCTCCATACAAAGTGGAAGCAAA 59.174 43.478 0.00 0.00 44.69 3.68
665 718 4.082571 CCTCCATACAAAGTGGAAGCAAAG 60.083 45.833 0.00 0.00 44.69 2.77
666 719 4.724399 TCCATACAAAGTGGAAGCAAAGA 58.276 39.130 0.00 0.00 42.56 2.52
710 844 0.668706 CCAACCTCACTCTCACTGCG 60.669 60.000 0.00 0.00 0.00 5.18
711 845 1.005630 AACCTCACTCTCACTGCGC 60.006 57.895 0.00 0.00 0.00 6.09
712 846 2.505777 CCTCACTCTCACTGCGCG 60.506 66.667 0.00 0.00 0.00 6.86
713 847 2.505777 CTCACTCTCACTGCGCGG 60.506 66.667 16.39 16.39 0.00 6.46
714 848 4.724602 TCACTCTCACTGCGCGGC 62.725 66.667 18.15 0.00 0.00 6.53
740 874 3.547249 CTGCTGCACCAAACCGCTG 62.547 63.158 0.00 0.00 0.00 5.18
742 876 3.289834 CTGCACCAAACCGCTGCT 61.290 61.111 0.00 0.00 0.00 4.24
860 1005 3.414700 CCCTTGTGTCGCACTCGC 61.415 66.667 10.54 0.00 35.11 5.03
861 1006 3.414700 CCTTGTGTCGCACTCGCC 61.415 66.667 10.54 0.00 35.11 5.54
862 1007 3.767230 CTTGTGTCGCACTCGCCG 61.767 66.667 10.54 0.00 35.11 6.46
914 1068 3.089784 CGTACGTACGTACCGCCT 58.910 61.111 38.76 14.12 45.80 5.52
915 1069 1.296867 CGTACGTACGTACCGCCTG 60.297 63.158 38.76 26.41 45.80 4.85
916 1070 1.583709 GTACGTACGTACCGCCTGC 60.584 63.158 36.94 18.04 43.60 4.85
917 1071 2.037702 TACGTACGTACCGCCTGCA 61.038 57.895 23.60 0.41 0.00 4.41
918 1072 2.252127 TACGTACGTACCGCCTGCAC 62.252 60.000 23.60 0.00 0.00 4.57
919 1073 2.570181 GTACGTACCGCCTGCACT 59.430 61.111 15.00 0.00 0.00 4.40
920 1074 1.515736 GTACGTACCGCCTGCACTC 60.516 63.158 15.00 0.00 0.00 3.51
921 1075 2.703798 TACGTACCGCCTGCACTCC 61.704 63.158 0.00 0.00 0.00 3.85
1038 1206 3.175710 GGTGGTGGTGGAGGTGGT 61.176 66.667 0.00 0.00 0.00 4.16
1044 1212 2.852075 GGTGGAGGTGGTGGTGGA 60.852 66.667 0.00 0.00 0.00 4.02
1331 1509 0.857935 GCACTGAGCGTATCATCTGC 59.142 55.000 6.74 6.74 37.28 4.26
1332 1510 1.537776 GCACTGAGCGTATCATCTGCT 60.538 52.381 11.82 0.00 42.73 4.24
1345 1531 3.941573 TCATCTGCTCATTGTTGCTGTA 58.058 40.909 6.13 0.00 0.00 2.74
1443 1643 2.293399 AGGTTTGCAGTTCGGCTTAAAG 59.707 45.455 0.00 0.00 34.04 1.85
1444 1644 2.051423 GTTTGCAGTTCGGCTTAAAGC 58.949 47.619 0.00 0.00 41.46 3.51
1447 1647 1.266718 TGCAGTTCGGCTTAAAGCTTG 59.733 47.619 0.00 0.00 41.99 4.01
1458 1658 5.641709 GGCTTAAAGCTTGGATTAGTTCAC 58.358 41.667 0.00 0.00 41.99 3.18
1483 1683 2.584143 GCGCAAGAATGGCATGGC 60.584 61.111 13.29 13.29 30.95 4.40
1510 1710 2.429351 CGCTCTGACGTGCGTTCTC 61.429 63.158 9.58 0.00 45.18 2.87
1529 1737 0.311790 CTGCTGATTTGCGGTGTTGT 59.688 50.000 0.00 0.00 34.82 3.32
1530 1738 0.743688 TGCTGATTTGCGGTGTTGTT 59.256 45.000 0.00 0.00 35.36 2.83
1531 1739 1.130955 GCTGATTTGCGGTGTTGTTG 58.869 50.000 0.00 0.00 0.00 3.33
1532 1740 1.535860 GCTGATTTGCGGTGTTGTTGT 60.536 47.619 0.00 0.00 0.00 3.32
1533 1741 2.287308 GCTGATTTGCGGTGTTGTTGTA 60.287 45.455 0.00 0.00 0.00 2.41
1534 1742 3.793801 GCTGATTTGCGGTGTTGTTGTAA 60.794 43.478 0.00 0.00 0.00 2.41
1535 1743 4.355437 CTGATTTGCGGTGTTGTTGTAAA 58.645 39.130 0.00 0.00 0.00 2.01
1539 1747 3.784701 TGCGGTGTTGTTGTAAATTGT 57.215 38.095 0.00 0.00 0.00 2.71
1541 1749 5.244785 TGCGGTGTTGTTGTAAATTGTAA 57.755 34.783 0.00 0.00 0.00 2.41
1556 1764 0.534873 TGTAATGCGCAGGAGCTACA 59.465 50.000 18.32 14.46 39.10 2.74
1735 1943 2.049433 GACACCACCACGTCCTCG 60.049 66.667 0.00 0.00 43.34 4.63
1750 1958 2.680352 TCGTCCTCAGGCTGGGAC 60.680 66.667 30.02 30.02 46.00 4.46
1755 1963 4.087892 CTCAGGCTGGGACCACGG 62.088 72.222 9.31 0.00 0.00 4.94
1756 1964 4.954118 TCAGGCTGGGACCACGGT 62.954 66.667 15.73 0.00 0.00 4.83
1986 2194 2.588314 GCTGGAGGCGCTGATCAG 60.588 66.667 18.84 18.84 0.00 2.90
2196 2413 2.813908 CGTGTACCGGCAGAAGGC 60.814 66.667 0.00 0.00 43.74 4.35
2317 2539 1.922545 GACAACGCCGACAGGTATAAC 59.077 52.381 0.00 0.00 40.50 1.89
2318 2540 1.283736 CAACGCCGACAGGTATAACC 58.716 55.000 0.00 0.00 40.50 2.85
2319 2541 0.179129 AACGCCGACAGGTATAACCG 60.179 55.000 0.00 0.00 44.90 4.44
2320 2542 1.315257 ACGCCGACAGGTATAACCGT 61.315 55.000 0.00 0.00 44.90 4.83
2321 2543 0.662619 CGCCGACAGGTATAACCGTA 59.337 55.000 0.00 0.00 44.90 4.02
2322 2544 1.267806 CGCCGACAGGTATAACCGTAT 59.732 52.381 0.00 0.00 44.90 3.06
2323 2545 2.483877 CGCCGACAGGTATAACCGTATA 59.516 50.000 0.00 0.00 44.90 1.47
2324 2546 3.058293 CGCCGACAGGTATAACCGTATAA 60.058 47.826 0.00 0.00 44.90 0.98
2336 2558 2.250031 ACCGTATAACACCACACTCCA 58.750 47.619 0.00 0.00 0.00 3.86
2352 2574 2.404789 CACGCCGACCATCAATGC 59.595 61.111 0.00 0.00 0.00 3.56
2393 2615 1.341852 ACCAAATTAAACCGGCACCAC 59.658 47.619 0.00 0.00 0.00 4.16
2394 2616 1.337354 CCAAATTAAACCGGCACCACC 60.337 52.381 0.00 0.00 0.00 4.61
2412 2634 1.849097 CCGCCACTATTCGGTTCTAC 58.151 55.000 0.00 0.00 40.72 2.59
2413 2635 1.474017 CGCCACTATTCGGTTCTACG 58.526 55.000 0.00 0.00 0.00 3.51
2414 2636 1.202222 CGCCACTATTCGGTTCTACGT 60.202 52.381 0.00 0.00 34.94 3.57
2415 2637 2.032054 CGCCACTATTCGGTTCTACGTA 59.968 50.000 0.00 0.00 34.94 3.57
2420 2642 6.195165 CCACTATTCGGTTCTACGTAGTTAC 58.805 44.000 21.53 18.80 37.78 2.50
2434 2656 6.976636 ACGTAGTTACTAGAGTTAGTGACC 57.023 41.667 0.00 0.00 43.68 4.02
2435 2657 5.578727 ACGTAGTTACTAGAGTTAGTGACCG 59.421 44.000 0.00 6.45 43.68 4.79
2445 2667 2.507110 TTAGTGACCGCCAGCAGCTC 62.507 60.000 0.00 0.00 40.39 4.09
2468 2694 2.672996 TCCAAGCTTTCTGGCCGC 60.673 61.111 0.00 0.00 0.00 6.53
2512 2738 1.133025 GGCACTGTTCCATTGATTCGG 59.867 52.381 0.00 0.00 0.00 4.30
2515 2741 0.740737 CTGTTCCATTGATTCGGCCC 59.259 55.000 0.00 0.00 0.00 5.80
2541 2767 1.209127 CGGCAGTTGGTTAAAGGCG 59.791 57.895 0.00 0.00 41.63 5.52
2564 2790 0.035247 CGAAAATTCCACCGGGGGTA 60.035 55.000 25.56 15.41 37.22 3.69
2565 2791 1.758936 GAAAATTCCACCGGGGGTAG 58.241 55.000 25.56 0.00 37.22 3.18
2566 2792 0.333652 AAAATTCCACCGGGGGTAGG 59.666 55.000 25.56 7.77 37.22 3.18
2567 2793 0.550638 AAATTCCACCGGGGGTAGGA 60.551 55.000 25.56 10.25 37.22 2.94
2568 2794 0.986550 AATTCCACCGGGGGTAGGAG 60.987 60.000 25.56 0.00 35.50 3.69
2569 2795 2.190904 ATTCCACCGGGGGTAGGAGT 62.191 60.000 25.56 6.98 35.50 3.85
2646 2872 2.016318 TGCTCACAAGTCACAAACAGG 58.984 47.619 0.00 0.00 0.00 4.00
2650 2876 1.330521 CACAAGTCACAAACAGGACGG 59.669 52.381 0.00 0.00 39.01 4.79
2651 2877 1.208535 ACAAGTCACAAACAGGACGGA 59.791 47.619 0.00 0.00 39.01 4.69
2652 2878 2.158813 ACAAGTCACAAACAGGACGGAT 60.159 45.455 0.00 0.00 39.01 4.18
2653 2879 2.457366 AGTCACAAACAGGACGGATC 57.543 50.000 0.00 0.00 39.01 3.36
2758 2984 1.981256 TCTTGGAAGTGTTCTTGCCC 58.019 50.000 0.00 0.00 40.51 5.36
2774 3000 2.951745 CCTGCGACACGAGCGATC 60.952 66.667 0.00 0.00 37.44 3.69
2838 3064 2.680352 ATGAGCCCGTGACTCCGT 60.680 61.111 0.00 0.00 32.98 4.69
2842 3068 2.505557 GCCCGTGACTCCGTTACG 60.506 66.667 0.00 0.00 43.41 3.18
2845 3071 1.136147 CCGTGACTCCGTTACGAGG 59.864 63.158 6.24 0.60 45.92 4.63
2852 3078 0.318784 CTCCGTTACGAGGGCATAGC 60.319 60.000 6.24 0.00 0.00 2.97
2854 3080 0.597637 CCGTTACGAGGGCATAGCAG 60.598 60.000 6.24 0.00 0.00 4.24
2855 3081 0.102481 CGTTACGAGGGCATAGCAGT 59.898 55.000 0.00 0.00 0.00 4.40
2856 3082 1.335810 CGTTACGAGGGCATAGCAGTA 59.664 52.381 0.00 0.00 0.00 2.74
2857 3083 2.604855 CGTTACGAGGGCATAGCAGTAG 60.605 54.545 0.00 0.00 0.00 2.57
2859 3085 0.106167 ACGAGGGCATAGCAGTAGGA 60.106 55.000 0.00 0.00 0.00 2.94
2860 3086 0.600557 CGAGGGCATAGCAGTAGGAG 59.399 60.000 0.00 0.00 0.00 3.69
2861 3087 1.710816 GAGGGCATAGCAGTAGGAGT 58.289 55.000 0.00 0.00 0.00 3.85
2862 3088 2.814469 CGAGGGCATAGCAGTAGGAGTA 60.814 54.545 0.00 0.00 0.00 2.59
2863 3089 2.559231 GAGGGCATAGCAGTAGGAGTAC 59.441 54.545 0.00 0.00 0.00 2.73
2864 3090 2.178106 AGGGCATAGCAGTAGGAGTACT 59.822 50.000 0.00 0.00 40.38 2.73
2908 3168 4.143389 CGAGTAAGACGTGAAACCATCAAC 60.143 45.833 0.00 0.00 40.50 3.18
2916 3176 5.938322 ACGTGAAACCATCAACACATTATC 58.062 37.500 0.00 0.00 40.50 1.75
2921 3181 6.718912 TGAAACCATCAACACATTATCAGGAA 59.281 34.615 0.00 0.00 34.30 3.36
2924 3184 4.641541 CCATCAACACATTATCAGGAAGCA 59.358 41.667 0.00 0.00 0.00 3.91
2926 3186 6.183360 CCATCAACACATTATCAGGAAGCAAT 60.183 38.462 0.00 0.00 0.00 3.56
2927 3187 6.198650 TCAACACATTATCAGGAAGCAATG 57.801 37.500 0.00 0.00 35.10 2.82
2928 3188 5.125900 TCAACACATTATCAGGAAGCAATGG 59.874 40.000 0.00 0.00 33.61 3.16
2929 3189 4.858850 ACACATTATCAGGAAGCAATGGA 58.141 39.130 0.00 0.00 33.61 3.41
2933 3193 6.208797 CACATTATCAGGAAGCAATGGATGAT 59.791 38.462 0.00 0.00 33.61 2.45
2934 3194 6.208797 ACATTATCAGGAAGCAATGGATGATG 59.791 38.462 0.00 0.00 37.73 3.07
2935 3195 3.657398 TCAGGAAGCAATGGATGATGT 57.343 42.857 0.00 0.00 0.00 3.06
2936 3196 3.972133 TCAGGAAGCAATGGATGATGTT 58.028 40.909 0.00 0.00 0.00 2.71
2938 3198 2.429610 AGGAAGCAATGGATGATGTTGC 59.570 45.455 1.35 1.35 46.37 4.17
2943 3203 2.869801 GCAATGGATGATGTTGCAATGG 59.130 45.455 0.59 0.00 45.57 3.16
2944 3204 3.431068 GCAATGGATGATGTTGCAATGGA 60.431 43.478 0.59 0.00 45.57 3.41
2945 3205 4.742440 GCAATGGATGATGTTGCAATGGAT 60.742 41.667 0.59 0.00 45.57 3.41
2946 3206 4.600692 ATGGATGATGTTGCAATGGATG 57.399 40.909 0.59 0.00 0.00 3.51
2964 3461 1.234615 TGCTGTTCAAGTAAGCGCCC 61.235 55.000 2.29 0.00 39.88 6.13
2983 3480 1.081892 CCTGTCAGGCATTGAACTCG 58.918 55.000 5.79 0.00 37.61 4.18
2989 3486 1.375523 GGCATTGAACTCGTCCGGT 60.376 57.895 0.00 0.00 0.00 5.28
2992 3489 1.939838 GCATTGAACTCGTCCGGTTCT 60.940 52.381 0.00 2.08 42.27 3.01
2993 3490 1.993370 CATTGAACTCGTCCGGTTCTC 59.007 52.381 0.00 0.00 42.27 2.87
2994 3491 1.034356 TTGAACTCGTCCGGTTCTCA 58.966 50.000 0.00 0.00 42.27 3.27
2995 3492 1.034356 TGAACTCGTCCGGTTCTCAA 58.966 50.000 0.00 0.00 42.27 3.02
2997 3494 0.319641 AACTCGTCCGGTTCTCAAGC 60.320 55.000 0.00 0.00 0.00 4.01
3052 3552 2.390599 ATGCGGCGCACTTGTACAG 61.391 57.895 38.84 0.00 43.04 2.74
3055 3555 2.094659 CGGCGCACTTGTACAGAGG 61.095 63.158 10.83 0.00 0.00 3.69
3105 3605 1.423056 GATTGTGCTGCACGAGAGC 59.577 57.895 25.36 14.36 37.14 4.09
3117 3618 1.300465 CGAGAGCCGTGATGATGGG 60.300 63.158 0.00 0.00 0.00 4.00
3118 3619 1.070445 GAGAGCCGTGATGATGGGG 59.930 63.158 0.00 0.00 0.00 4.96
3133 3634 1.305623 GGGGAGGGTACGAGAGACA 59.694 63.158 0.00 0.00 0.00 3.41
3135 3636 0.034283 GGGAGGGTACGAGAGACAGT 60.034 60.000 0.00 0.00 0.00 3.55
3142 3643 0.733150 TACGAGAGACAGTGATGCGG 59.267 55.000 0.00 0.00 0.00 5.69
3152 3653 2.866156 ACAGTGATGCGGAATGATAACG 59.134 45.455 0.00 0.00 0.00 3.18
3169 3673 6.765089 TGATAACGTACGACTTACTGTACTG 58.235 40.000 24.41 0.00 38.99 2.74
3171 3675 3.070018 ACGTACGACTTACTGTACTGCT 58.930 45.455 24.41 0.00 38.99 4.24
3172 3676 3.120408 ACGTACGACTTACTGTACTGCTG 60.120 47.826 24.41 0.00 38.99 4.41
3173 3677 2.349297 ACGACTTACTGTACTGCTGC 57.651 50.000 0.00 0.00 0.00 5.25
3174 3678 1.887198 ACGACTTACTGTACTGCTGCT 59.113 47.619 0.00 0.00 0.00 4.24
3181 3685 6.331061 ACTTACTGTACTGCTGCTGTATTAC 58.669 40.000 19.96 12.07 0.00 1.89
3218 3724 4.193893 TGGATGATGGCAGGGCGG 62.194 66.667 0.00 0.00 0.00 6.13
3219 3725 4.962836 GGATGATGGCAGGGCGGG 62.963 72.222 0.00 0.00 0.00 6.13
3359 3867 4.824166 CGTGAGGGCGTACGTCCG 62.824 72.222 31.50 16.92 46.16 4.79
3361 3869 3.434319 TGAGGGCGTACGTCCGTC 61.434 66.667 31.50 29.69 46.16 4.79
3372 3899 2.798262 GTCCGTCGTGGTTCGTCG 60.798 66.667 0.00 0.00 46.59 5.12
3380 3907 2.659244 TGGTTCGTCGTCGGCAAC 60.659 61.111 1.55 0.77 37.69 4.17
3449 3986 0.607489 CTTGTCTGGAGCTTGGGTGG 60.607 60.000 0.00 0.00 0.00 4.61
3486 4041 1.768275 TGGCTGGTATATCTGGGTGTG 59.232 52.381 0.00 0.00 0.00 3.82
3507 4062 6.632834 GTGTGACATGAAACAGTATTTGTGAC 59.367 38.462 0.00 0.00 40.74 3.67
3512 4067 5.073192 TGAAACAGTATTTGTGACGAACG 57.927 39.130 0.00 0.00 40.74 3.95
3548 4103 0.948141 GCTCTTTCGCTGTGCTCAGT 60.948 55.000 16.59 0.00 43.05 3.41
3558 4113 2.672478 GCTGTGCTCAGTGGTAGTAGTG 60.672 54.545 16.59 0.00 43.05 2.74
3620 5662 1.518133 GCACAGACAGCTAGCTCCG 60.518 63.158 16.15 7.47 0.00 4.63
3623 5665 2.363018 AGACAGCTAGCTCCGGCA 60.363 61.111 16.15 0.00 41.70 5.69
3624 5666 2.202810 GACAGCTAGCTCCGGCAC 60.203 66.667 16.15 0.00 41.70 5.01
3629 5671 2.185350 CTAGCTCCGGCACCTGTG 59.815 66.667 0.00 0.00 41.70 3.66
3630 5672 2.603473 TAGCTCCGGCACCTGTGT 60.603 61.111 0.00 0.00 41.70 3.72
3631 5673 2.842394 CTAGCTCCGGCACCTGTGTG 62.842 65.000 0.00 0.00 45.65 3.82
3639 5681 3.736483 CACCTGTGTGCACCACTC 58.264 61.111 15.69 3.00 44.81 3.51
3640 5682 1.153188 CACCTGTGTGCACCACTCA 60.153 57.895 15.69 7.58 44.81 3.41
3641 5683 1.153168 ACCTGTGTGCACCACTCAC 60.153 57.895 15.69 5.87 44.81 3.51
3642 5684 1.146930 CCTGTGTGCACCACTCACT 59.853 57.895 15.69 0.00 44.81 3.41
3643 5685 0.392706 CCTGTGTGCACCACTCACTA 59.607 55.000 15.69 0.00 44.81 2.74
3644 5686 1.606480 CCTGTGTGCACCACTCACTAG 60.606 57.143 15.69 5.78 44.81 2.57
3645 5687 0.249868 TGTGTGCACCACTCACTAGC 60.250 55.000 15.69 0.00 44.81 3.42
3646 5688 0.951040 GTGTGCACCACTCACTAGCC 60.951 60.000 15.69 0.00 41.11 3.93
3686 5728 1.601663 GCCTAGCTATGTCACGCAGAG 60.602 57.143 0.00 0.00 39.31 3.35
3699 5741 3.680786 CAGAGCGGTCCACGTCCA 61.681 66.667 11.73 0.00 46.52 4.02
3700 5742 3.681835 AGAGCGGTCCACGTCCAC 61.682 66.667 11.73 0.00 46.52 4.02
3706 5748 0.249322 CGGTCCACGTCCACCATATC 60.249 60.000 12.02 0.00 37.93 1.63
3721 5763 1.544825 ATATCCTCACCATCGGCCCG 61.545 60.000 0.00 0.00 0.00 6.13
3751 5794 1.115467 ATTGTTGGACCACGGCAAAA 58.885 45.000 0.00 0.00 0.00 2.44
3752 5795 1.115467 TTGTTGGACCACGGCAAAAT 58.885 45.000 0.00 0.00 0.00 1.82
3754 5797 0.038618 GTTGGACCACGGCAAAATCC 60.039 55.000 0.00 0.00 0.00 3.01
3755 5798 0.178975 TTGGACCACGGCAAAATCCT 60.179 50.000 0.00 0.00 0.00 3.24
3756 5799 0.178975 TGGACCACGGCAAAATCCTT 60.179 50.000 0.00 0.00 0.00 3.36
3757 5800 1.074084 TGGACCACGGCAAAATCCTTA 59.926 47.619 0.00 0.00 0.00 2.69
3787 5830 0.175760 ATAGTGCTGTAGCCGTGGTG 59.824 55.000 0.80 0.00 41.18 4.17
3799 6581 2.281208 GTGGTGGGCGCACTGTAA 60.281 61.111 29.99 13.14 0.00 2.41
3817 6619 1.198759 AAGTAGGCTGCCTTTCCGGA 61.199 55.000 28.55 0.00 34.61 5.14
3871 6674 4.470334 TCTGTTTTTCAGCCTGCTTTTT 57.530 36.364 0.00 0.00 43.32 1.94
3873 6676 3.186119 TGTTTTTCAGCCTGCTTTTTCG 58.814 40.909 0.00 0.00 0.00 3.46
3874 6677 3.186909 GTTTTTCAGCCTGCTTTTTCGT 58.813 40.909 0.00 0.00 0.00 3.85
3907 6715 9.589111 TTTTTGCTTTTTCGTTTCTATTTACCT 57.411 25.926 0.00 0.00 0.00 3.08
3983 6807 7.436673 TCAAATTCACAAACATTTCTAAACCCG 59.563 33.333 0.00 0.00 0.00 5.28
3986 6810 4.882427 TCACAAACATTTCTAAACCCGTGA 59.118 37.500 0.00 0.00 0.00 4.35
4014 6841 9.824534 AAAAATATGCCGCAAGAAAAATTAAAG 57.175 25.926 0.00 0.00 43.02 1.85
4016 6843 2.728839 TGCCGCAAGAAAAATTAAAGCG 59.271 40.909 0.00 0.00 42.93 4.68
4017 6844 2.983803 GCCGCAAGAAAAATTAAAGCGA 59.016 40.909 5.41 0.00 45.78 4.93
4052 6987 3.252400 CAACACAGCAGCAGAAACAAAA 58.748 40.909 0.00 0.00 0.00 2.44
4055 6990 2.861935 CACAGCAGCAGAAACAAAAAGG 59.138 45.455 0.00 0.00 0.00 3.11
4057 6992 2.101249 CAGCAGCAGAAACAAAAAGGGA 59.899 45.455 0.00 0.00 0.00 4.20
4059 6994 3.197549 AGCAGCAGAAACAAAAAGGGAAA 59.802 39.130 0.00 0.00 0.00 3.13
4060 6995 3.309682 GCAGCAGAAACAAAAAGGGAAAC 59.690 43.478 0.00 0.00 0.00 2.78
4064 7001 6.093909 CAGCAGAAACAAAAAGGGAAACAAAT 59.906 34.615 0.00 0.00 0.00 2.32
4102 7039 0.248990 AACAAGCAACACATGTGCGG 60.249 50.000 25.68 18.07 0.00 5.69
4103 7040 2.017783 CAAGCAACACATGTGCGGC 61.018 57.895 25.68 26.05 34.44 6.53
4104 7041 3.541093 AAGCAACACATGTGCGGCG 62.541 57.895 25.68 12.24 37.80 6.46
4105 7042 4.024143 GCAACACATGTGCGGCGA 62.024 61.111 25.68 0.00 0.00 5.54
4107 7044 2.280797 AACACATGTGCGGCGACT 60.281 55.556 25.68 0.98 0.00 4.18
4115 7052 4.849310 TGCGGCGACTAATGGGCC 62.849 66.667 12.98 0.00 43.42 5.80
4149 7086 2.489751 GCTGCGGGCGCTATTTTT 59.510 55.556 7.64 0.00 42.51 1.94
4159 7096 2.863740 GGCGCTATTTTTAATTGGCACC 59.136 45.455 7.64 0.00 0.00 5.01
4160 7097 3.516615 GCGCTATTTTTAATTGGCACCA 58.483 40.909 0.00 0.00 0.00 4.17
4172 7109 2.343387 GCACCAAAGGCGCCAAAT 59.657 55.556 31.54 11.91 0.00 2.32
4175 7112 0.458370 CACCAAAGGCGCCAAATAGC 60.458 55.000 31.54 0.00 0.00 2.97
4189 7126 6.060028 GCCAAATAGCGAAATCACTAATGA 57.940 37.500 0.00 0.00 39.83 2.57
4190 7127 6.494842 GCCAAATAGCGAAATCACTAATGAA 58.505 36.000 0.00 0.00 38.69 2.57
4191 7128 6.634436 GCCAAATAGCGAAATCACTAATGAAG 59.366 38.462 0.00 0.00 38.69 3.02
4192 7129 6.634436 CCAAATAGCGAAATCACTAATGAAGC 59.366 38.462 0.00 0.00 38.69 3.86
4193 7130 6.925610 AATAGCGAAATCACTAATGAAGCA 57.074 33.333 0.00 0.00 38.69 3.91
4194 7131 4.871993 AGCGAAATCACTAATGAAGCAG 57.128 40.909 0.00 0.00 38.69 4.24
4195 7132 4.256920 AGCGAAATCACTAATGAAGCAGT 58.743 39.130 0.00 0.00 38.69 4.40
4196 7133 5.419542 AGCGAAATCACTAATGAAGCAGTA 58.580 37.500 0.00 0.00 38.69 2.74
4197 7134 5.292101 AGCGAAATCACTAATGAAGCAGTAC 59.708 40.000 0.00 0.00 38.69 2.73
4198 7135 5.292101 GCGAAATCACTAATGAAGCAGTACT 59.708 40.000 0.00 0.00 38.69 2.73
4199 7136 6.508721 GCGAAATCACTAATGAAGCAGTACTC 60.509 42.308 0.00 0.00 38.69 2.59
4200 7137 6.291322 CGAAATCACTAATGAAGCAGTACTCG 60.291 42.308 0.00 0.00 38.69 4.18
4201 7138 5.584253 ATCACTAATGAAGCAGTACTCGT 57.416 39.130 0.00 0.00 38.69 4.18
4202 7139 5.386958 TCACTAATGAAGCAGTACTCGTT 57.613 39.130 0.00 0.00 0.00 3.85
4203 7140 5.161358 TCACTAATGAAGCAGTACTCGTTG 58.839 41.667 0.00 0.00 0.00 4.10
4204 7141 3.927142 ACTAATGAAGCAGTACTCGTTGC 59.073 43.478 0.00 0.00 40.57 4.17
4205 7142 2.455674 ATGAAGCAGTACTCGTTGCA 57.544 45.000 7.48 0.94 42.67 4.08
4206 7143 2.232756 TGAAGCAGTACTCGTTGCAA 57.767 45.000 7.48 0.00 42.67 4.08
4207 7144 2.556257 TGAAGCAGTACTCGTTGCAAA 58.444 42.857 0.00 0.00 42.67 3.68
4208 7145 2.543848 TGAAGCAGTACTCGTTGCAAAG 59.456 45.455 0.00 2.46 42.67 2.77
4209 7146 2.526304 AGCAGTACTCGTTGCAAAGA 57.474 45.000 14.45 14.45 42.67 2.52
4210 7147 2.833794 AGCAGTACTCGTTGCAAAGAA 58.166 42.857 15.91 0.00 42.67 2.52
4211 7148 2.544267 AGCAGTACTCGTTGCAAAGAAC 59.456 45.455 15.91 11.95 42.67 3.01
4212 7149 2.286833 GCAGTACTCGTTGCAAAGAACA 59.713 45.455 15.91 4.24 40.02 3.18
4213 7150 3.844943 GCAGTACTCGTTGCAAAGAACAC 60.845 47.826 15.91 14.96 40.02 3.32
4214 7151 3.555956 CAGTACTCGTTGCAAAGAACACT 59.444 43.478 15.91 16.69 0.00 3.55
4215 7152 3.802685 AGTACTCGTTGCAAAGAACACTC 59.197 43.478 15.91 5.78 0.00 3.51
4216 7153 1.940613 ACTCGTTGCAAAGAACACTCC 59.059 47.619 15.91 0.00 0.00 3.85
4217 7154 1.939934 CTCGTTGCAAAGAACACTCCA 59.060 47.619 15.91 0.00 0.00 3.86
4218 7155 1.668751 TCGTTGCAAAGAACACTCCAC 59.331 47.619 12.88 0.00 0.00 4.02
4219 7156 1.268539 CGTTGCAAAGAACACTCCACC 60.269 52.381 6.52 0.00 0.00 4.61
4220 7157 2.024414 GTTGCAAAGAACACTCCACCT 58.976 47.619 0.00 0.00 0.00 4.00
4221 7158 2.427095 GTTGCAAAGAACACTCCACCTT 59.573 45.455 0.00 0.00 0.00 3.50
4222 7159 2.733956 TGCAAAGAACACTCCACCTTT 58.266 42.857 0.00 0.00 0.00 3.11
4223 7160 3.096092 TGCAAAGAACACTCCACCTTTT 58.904 40.909 0.00 0.00 0.00 2.27
4224 7161 3.130340 TGCAAAGAACACTCCACCTTTTC 59.870 43.478 0.00 0.00 0.00 2.29
4225 7162 3.130340 GCAAAGAACACTCCACCTTTTCA 59.870 43.478 0.00 0.00 0.00 2.69
4226 7163 4.734695 GCAAAGAACACTCCACCTTTTCAG 60.735 45.833 0.00 0.00 0.00 3.02
4238 7175 2.561569 CCTTTTCAGGTCGTGACAAGT 58.438 47.619 16.30 0.00 40.17 3.16
4239 7176 2.287915 CCTTTTCAGGTCGTGACAAGTG 59.712 50.000 16.30 7.61 40.17 3.16
4240 7177 2.971660 TTTCAGGTCGTGACAAGTGA 57.028 45.000 2.00 0.00 33.71 3.41
4241 7178 2.218953 TTCAGGTCGTGACAAGTGAC 57.781 50.000 2.00 0.00 33.71 3.67
4242 7179 0.030235 TCAGGTCGTGACAAGTGACG 59.970 55.000 5.86 5.86 41.44 4.35
4243 7180 1.299926 AGGTCGTGACAAGTGACGC 60.300 57.895 7.33 3.23 39.95 5.19
4244 7181 1.590525 GGTCGTGACAAGTGACGCA 60.591 57.895 7.33 0.00 39.95 5.24
4245 7182 1.558383 GTCGTGACAAGTGACGCAC 59.442 57.895 7.33 3.75 39.95 5.34
4246 7183 1.139947 TCGTGACAAGTGACGCACA 59.860 52.632 7.33 0.00 39.95 4.57
4247 7184 0.249280 TCGTGACAAGTGACGCACAT 60.249 50.000 7.33 0.00 39.95 3.21
4248 7185 1.001158 TCGTGACAAGTGACGCACATA 60.001 47.619 7.33 0.00 39.95 2.29
4249 7186 1.124297 CGTGACAAGTGACGCACATAC 59.876 52.381 11.58 3.67 36.74 2.39
4250 7187 2.131972 GTGACAAGTGACGCACATACA 58.868 47.619 11.58 4.69 36.74 2.29
4251 7188 2.155732 GTGACAAGTGACGCACATACAG 59.844 50.000 11.58 1.16 36.74 2.74
4252 7189 1.126846 GACAAGTGACGCACATACAGC 59.873 52.381 11.58 0.00 36.74 4.40
4259 7196 4.520846 GCACATACAGCGCGCCAC 62.521 66.667 30.33 0.00 0.00 5.01
4260 7197 2.815211 CACATACAGCGCGCCACT 60.815 61.111 30.33 13.06 0.00 4.00
4261 7198 2.047274 ACATACAGCGCGCCACTT 60.047 55.556 30.33 12.22 0.00 3.16
4262 7199 2.390599 ACATACAGCGCGCCACTTG 61.391 57.895 30.33 22.08 0.00 3.16
4263 7200 2.047274 ATACAGCGCGCCACTTGT 60.047 55.556 30.33 26.70 0.00 3.16
4264 7201 2.100631 ATACAGCGCGCCACTTGTC 61.101 57.895 30.33 0.00 0.00 3.18
4265 7202 2.779951 ATACAGCGCGCCACTTGTCA 62.780 55.000 30.33 13.91 0.00 3.58
4266 7203 4.374702 CAGCGCGCCACTTGTCAC 62.375 66.667 30.33 0.00 0.00 3.67
4267 7204 4.908687 AGCGCGCCACTTGTCACA 62.909 61.111 30.33 0.00 0.00 3.58
4268 7205 3.947841 GCGCGCCACTTGTCACAA 61.948 61.111 23.24 0.00 0.00 3.33
4269 7206 2.249309 CGCGCCACTTGTCACAAG 59.751 61.111 16.42 16.42 0.00 3.16
4270 7207 2.050985 GCGCCACTTGTCACAAGC 60.051 61.111 17.93 3.72 0.00 4.01
4271 7208 2.546494 GCGCCACTTGTCACAAGCT 61.546 57.895 17.93 2.17 0.00 3.74
4272 7209 1.280746 CGCCACTTGTCACAAGCTG 59.719 57.895 17.93 13.91 0.00 4.24
4273 7210 1.656441 GCCACTTGTCACAAGCTGG 59.344 57.895 24.14 24.14 0.00 4.85
4274 7211 1.799258 GCCACTTGTCACAAGCTGGG 61.799 60.000 26.98 21.99 0.00 4.45
4275 7212 0.179020 CCACTTGTCACAAGCTGGGA 60.179 55.000 22.17 0.00 0.00 4.37
4276 7213 1.233019 CACTTGTCACAAGCTGGGAG 58.767 55.000 17.93 0.00 25.25 4.30
4277 7214 0.839946 ACTTGTCACAAGCTGGGAGT 59.160 50.000 17.93 0.00 25.25 3.85
4278 7215 1.212935 ACTTGTCACAAGCTGGGAGTT 59.787 47.619 17.93 0.00 25.25 3.01
4279 7216 2.301346 CTTGTCACAAGCTGGGAGTTT 58.699 47.619 4.15 0.00 25.25 2.66
4280 7217 2.435372 TGTCACAAGCTGGGAGTTTT 57.565 45.000 0.00 0.00 25.25 2.43
4281 7218 2.297701 TGTCACAAGCTGGGAGTTTTC 58.702 47.619 0.00 0.00 25.25 2.29
4282 7219 1.609072 GTCACAAGCTGGGAGTTTTCC 59.391 52.381 0.00 0.00 43.23 3.13
4283 7220 1.494721 TCACAAGCTGGGAGTTTTCCT 59.505 47.619 0.00 0.00 43.49 3.36
4284 7221 2.091885 TCACAAGCTGGGAGTTTTCCTT 60.092 45.455 0.00 0.00 43.49 3.36
4285 7222 2.695147 CACAAGCTGGGAGTTTTCCTTT 59.305 45.455 0.00 0.00 43.49 3.11
4286 7223 3.132824 CACAAGCTGGGAGTTTTCCTTTT 59.867 43.478 0.00 0.00 43.49 2.27
4287 7224 3.774766 ACAAGCTGGGAGTTTTCCTTTTT 59.225 39.130 0.00 0.00 43.49 1.94
4343 7280 8.397906 TCTTTTAAACCATGCATCTAAATCTCG 58.602 33.333 0.00 0.00 0.00 4.04
4344 7281 7.857734 TTTAAACCATGCATCTAAATCTCGA 57.142 32.000 0.00 0.00 0.00 4.04
4345 7282 7.857734 TTAAACCATGCATCTAAATCTCGAA 57.142 32.000 0.00 0.00 0.00 3.71
4346 7283 6.949352 AAACCATGCATCTAAATCTCGAAT 57.051 33.333 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.309621 GGACAATTAGTATACTAATCCGAGCCA 60.310 40.741 29.61 7.84 45.55 4.75
1 2 7.034397 GGACAATTAGTATACTAATCCGAGCC 58.966 42.308 29.61 23.87 45.55 4.70
6 7 8.305317 AGAAGCGGACAATTAGTATACTAATCC 58.695 37.037 29.61 26.01 45.55 3.01
7 8 9.344309 GAGAAGCGGACAATTAGTATACTAATC 57.656 37.037 29.61 21.13 45.55 1.75
9 10 8.461249 AGAGAAGCGGACAATTAGTATACTAA 57.539 34.615 24.01 24.01 42.04 2.24
10 11 7.174599 GGAGAGAAGCGGACAATTAGTATACTA 59.825 40.741 8.59 8.59 0.00 1.82
11 12 6.016108 GGAGAGAAGCGGACAATTAGTATACT 60.016 42.308 10.87 10.87 0.00 2.12
12 13 6.151004 GGAGAGAAGCGGACAATTAGTATAC 58.849 44.000 0.00 0.00 0.00 1.47
13 14 5.243283 GGGAGAGAAGCGGACAATTAGTATA 59.757 44.000 0.00 0.00 0.00 1.47
14 15 4.039366 GGGAGAGAAGCGGACAATTAGTAT 59.961 45.833 0.00 0.00 0.00 2.12
15 16 3.383825 GGGAGAGAAGCGGACAATTAGTA 59.616 47.826 0.00 0.00 0.00 1.82
16 17 2.168728 GGGAGAGAAGCGGACAATTAGT 59.831 50.000 0.00 0.00 0.00 2.24
17 18 2.799917 CGGGAGAGAAGCGGACAATTAG 60.800 54.545 0.00 0.00 0.00 1.73
18 19 1.136305 CGGGAGAGAAGCGGACAATTA 59.864 52.381 0.00 0.00 0.00 1.40
19 20 0.108138 CGGGAGAGAAGCGGACAATT 60.108 55.000 0.00 0.00 0.00 2.32
20 21 1.258445 ACGGGAGAGAAGCGGACAAT 61.258 55.000 0.00 0.00 0.00 2.71
21 22 1.906824 ACGGGAGAGAAGCGGACAA 60.907 57.895 0.00 0.00 0.00 3.18
22 23 2.282958 ACGGGAGAGAAGCGGACA 60.283 61.111 0.00 0.00 0.00 4.02
23 24 2.182030 CACGGGAGAGAAGCGGAC 59.818 66.667 0.00 0.00 0.00 4.79
24 25 3.068691 CCACGGGAGAGAAGCGGA 61.069 66.667 0.00 0.00 0.00 5.54
25 26 3.068691 TCCACGGGAGAGAAGCGG 61.069 66.667 0.00 0.00 0.00 5.52
26 27 2.182030 GTCCACGGGAGAGAAGCG 59.818 66.667 0.00 0.00 29.39 4.68
27 28 1.216710 CTGTCCACGGGAGAGAAGC 59.783 63.158 10.42 0.00 44.67 3.86
28 29 0.612174 TCCTGTCCACGGGAGAGAAG 60.612 60.000 15.70 3.81 44.67 2.85
29 30 1.463375 TCCTGTCCACGGGAGAGAA 59.537 57.895 15.70 0.00 44.67 2.87
30 31 3.177291 TCCTGTCCACGGGAGAGA 58.823 61.111 15.70 0.00 44.67 3.10
35 36 3.706373 CCCTGTCCTGTCCACGGG 61.706 72.222 0.00 0.00 43.86 5.28
36 37 1.553690 AATCCCTGTCCTGTCCACGG 61.554 60.000 0.00 0.00 0.00 4.94
37 38 0.391661 CAATCCCTGTCCTGTCCACG 60.392 60.000 0.00 0.00 0.00 4.94
38 39 0.678048 GCAATCCCTGTCCTGTCCAC 60.678 60.000 0.00 0.00 0.00 4.02
39 40 1.133181 TGCAATCCCTGTCCTGTCCA 61.133 55.000 0.00 0.00 0.00 4.02
113 123 7.967890 AAAATGGGTTCATTGTCTCATTTTC 57.032 32.000 19.15 0.00 42.29 2.29
118 128 6.374333 GCTAGTAAAATGGGTTCATTGTCTCA 59.626 38.462 0.00 0.00 42.29 3.27
119 129 6.374333 TGCTAGTAAAATGGGTTCATTGTCTC 59.626 38.462 0.00 0.00 42.29 3.36
127 137 6.942532 TGATGATGCTAGTAAAATGGGTTC 57.057 37.500 0.00 0.00 0.00 3.62
130 140 5.277974 CCGTTGATGATGCTAGTAAAATGGG 60.278 44.000 0.00 0.00 0.00 4.00
131 141 5.751680 CCGTTGATGATGCTAGTAAAATGG 58.248 41.667 0.00 0.00 0.00 3.16
132 142 5.207768 GCCGTTGATGATGCTAGTAAAATG 58.792 41.667 0.00 0.00 0.00 2.32
133 143 4.881273 TGCCGTTGATGATGCTAGTAAAAT 59.119 37.500 0.00 0.00 0.00 1.82
169 212 4.633126 GTGTACTATGATGGCATGGCTATG 59.367 45.833 21.08 5.55 36.54 2.23
170 213 4.323792 GGTGTACTATGATGGCATGGCTAT 60.324 45.833 21.08 11.93 36.54 2.97
281 324 3.436704 AGCGGATTGTGTGTTGATTAGTG 59.563 43.478 0.00 0.00 0.00 2.74
299 342 1.201587 CGTACGTCGTAAACAAAGCGG 60.202 52.381 6.68 0.00 34.52 5.52
442 492 1.777941 ACCGGTTGTTTTAAGCCCAA 58.222 45.000 0.00 0.00 0.00 4.12
444 494 2.475818 CAAACCGGTTGTTTTAAGCCC 58.524 47.619 23.08 0.00 44.80 5.19
485 537 1.667830 TTTCTGGAGCGTGGCGAAG 60.668 57.895 0.00 0.00 0.00 3.79
544 597 1.933853 GCGACTTTGAGAACAGTGTGT 59.066 47.619 0.00 0.00 0.00 3.72
546 599 1.139058 AGGCGACTTTGAGAACAGTGT 59.861 47.619 0.00 0.00 37.44 3.55
552 605 1.542547 GGTTGGAGGCGACTTTGAGAA 60.543 52.381 0.00 0.00 44.43 2.87
563 616 1.257750 GGGATTTGTGGGTTGGAGGC 61.258 60.000 0.00 0.00 0.00 4.70
574 627 3.245229 TGACTAATGCAGTGGGGATTTGT 60.245 43.478 1.76 0.00 43.52 2.83
616 669 3.322828 GTCCTGTTGGTGGTAGTACTTGA 59.677 47.826 0.00 0.00 34.23 3.02
618 671 3.311091 TGTCCTGTTGGTGGTAGTACTT 58.689 45.455 0.00 0.00 34.23 2.24
621 674 3.262405 GGATTGTCCTGTTGGTGGTAGTA 59.738 47.826 0.00 0.00 32.53 1.82
622 675 2.039879 GGATTGTCCTGTTGGTGGTAGT 59.960 50.000 0.00 0.00 32.53 2.73
623 676 2.711542 GGATTGTCCTGTTGGTGGTAG 58.288 52.381 0.00 0.00 32.53 3.18
660 713 1.301293 CCAGAGGAGGGGTCTTTGC 59.699 63.158 0.00 0.00 0.00 3.68
692 749 1.287730 GCGCAGTGAGAGTGAGGTTG 61.288 60.000 0.30 0.00 0.00 3.77
720 854 4.688419 CGGTTTGGTGCAGCAGCG 62.688 66.667 19.25 15.45 46.23 5.18
768 910 2.821366 GACCATCGGGCAGCTGTG 60.821 66.667 16.64 4.85 37.90 3.66
862 1007 1.353453 GCAGCTAGCGCTTAAAGGC 59.647 57.895 18.68 12.77 46.47 4.35
863 1008 1.766143 CGGCAGCTAGCGCTTAAAGG 61.766 60.000 18.68 3.01 46.47 3.11
920 1074 3.298036 CGCTATAACAAGCAGCAGCGG 62.298 57.143 12.04 0.00 45.91 5.52
922 1076 1.004504 GACGCTATAACAAGCAGCAGC 60.005 52.381 0.00 0.00 42.91 5.25
1032 1200 3.580319 GCCCTTCCACCACCACCT 61.580 66.667 0.00 0.00 0.00 4.00
1268 1436 4.758251 CCATGAGCGGACGGTGCA 62.758 66.667 0.00 0.01 33.85 4.57
1323 1501 3.353557 ACAGCAACAATGAGCAGATGAT 58.646 40.909 5.43 0.00 0.00 2.45
1324 1502 2.786777 ACAGCAACAATGAGCAGATGA 58.213 42.857 5.43 0.00 0.00 2.92
1325 1503 3.688185 AGTACAGCAACAATGAGCAGATG 59.312 43.478 0.00 0.00 0.00 2.90
1326 1504 3.688185 CAGTACAGCAACAATGAGCAGAT 59.312 43.478 0.00 0.00 0.00 2.90
1328 1506 2.810274 ACAGTACAGCAACAATGAGCAG 59.190 45.455 0.00 0.38 0.00 4.24
1330 1508 2.549754 ACACAGTACAGCAACAATGAGC 59.450 45.455 0.00 0.00 0.00 4.26
1331 1509 5.230182 TCTACACAGTACAGCAACAATGAG 58.770 41.667 0.00 0.00 0.00 2.90
1332 1510 5.208463 TCTACACAGTACAGCAACAATGA 57.792 39.130 0.00 0.00 0.00 2.57
1333 1511 5.409520 ACATCTACACAGTACAGCAACAATG 59.590 40.000 0.00 0.00 0.00 2.82
1345 1531 3.003793 CCGATCGATCACATCTACACAGT 59.996 47.826 24.40 0.00 0.00 3.55
1443 1643 0.733150 GCCGGTGAACTAATCCAAGC 59.267 55.000 1.90 0.00 0.00 4.01
1444 1644 1.006832 CGCCGGTGAACTAATCCAAG 58.993 55.000 10.20 0.00 0.00 3.61
1447 1647 1.217882 CATCGCCGGTGAACTAATCC 58.782 55.000 23.72 0.00 0.00 3.01
1499 1699 0.319900 AATCAGCAGAGAACGCACGT 60.320 50.000 0.00 0.00 0.00 4.49
1501 1701 1.727213 GCAAATCAGCAGAGAACGCAC 60.727 52.381 0.00 0.00 0.00 5.34
1505 1705 1.135859 CACCGCAAATCAGCAGAGAAC 60.136 52.381 0.00 0.00 0.00 3.01
1510 1710 0.311790 ACAACACCGCAAATCAGCAG 59.688 50.000 0.00 0.00 0.00 4.24
1529 1737 4.674101 GCTCCTGCGCATTACAATTTACAA 60.674 41.667 12.24 0.00 0.00 2.41
1530 1738 3.181501 GCTCCTGCGCATTACAATTTACA 60.182 43.478 12.24 0.00 0.00 2.41
1531 1739 3.065371 AGCTCCTGCGCATTACAATTTAC 59.935 43.478 12.24 0.00 45.42 2.01
1532 1740 3.278574 AGCTCCTGCGCATTACAATTTA 58.721 40.909 12.24 0.00 45.42 1.40
1533 1741 2.094675 AGCTCCTGCGCATTACAATTT 58.905 42.857 12.24 0.00 45.42 1.82
1534 1742 1.755179 AGCTCCTGCGCATTACAATT 58.245 45.000 12.24 0.00 45.42 2.32
1535 1743 2.213499 GTAGCTCCTGCGCATTACAAT 58.787 47.619 12.24 0.00 45.42 2.71
1539 1747 0.104855 CCTGTAGCTCCTGCGCATTA 59.895 55.000 12.24 0.01 45.42 1.90
1541 1749 1.617018 TTCCTGTAGCTCCTGCGCAT 61.617 55.000 12.24 0.00 45.42 4.73
1717 1925 2.049433 GAGGACGTGGTGGTGTCG 60.049 66.667 0.00 0.00 35.95 4.35
1750 1958 2.347490 CCCTTCCTGTGACCGTGG 59.653 66.667 0.00 0.00 0.00 4.94
1755 1963 2.432628 CGACGCCCTTCCTGTGAC 60.433 66.667 0.00 0.00 0.00 3.67
1756 1964 4.373116 GCGACGCCCTTCCTGTGA 62.373 66.667 9.14 0.00 0.00 3.58
1796 2004 1.308069 TACACCCTGTACTCGCCGAC 61.308 60.000 0.00 0.00 0.00 4.79
2182 2399 4.078516 ACCGCCTTCTGCCGGTAC 62.079 66.667 1.90 0.00 42.44 3.34
2196 2413 0.450983 GTACTCCTTGTCCTCGACCG 59.549 60.000 0.00 0.00 0.00 4.79
2293 2510 2.805353 CTGTCGGCGTTGTCGGAG 60.805 66.667 6.85 0.00 37.56 4.63
2297 2514 1.922545 GTTATACCTGTCGGCGTTGTC 59.077 52.381 6.85 0.00 0.00 3.18
2317 2539 2.613691 GTGGAGTGTGGTGTTATACGG 58.386 52.381 0.00 0.00 0.00 4.02
2318 2540 2.256174 CGTGGAGTGTGGTGTTATACG 58.744 52.381 0.00 0.00 0.00 3.06
2319 2541 1.997606 GCGTGGAGTGTGGTGTTATAC 59.002 52.381 0.00 0.00 0.00 1.47
2320 2542 1.066716 GGCGTGGAGTGTGGTGTTATA 60.067 52.381 0.00 0.00 0.00 0.98
2321 2543 0.321298 GGCGTGGAGTGTGGTGTTAT 60.321 55.000 0.00 0.00 0.00 1.89
2322 2544 1.070105 GGCGTGGAGTGTGGTGTTA 59.930 57.895 0.00 0.00 0.00 2.41
2323 2545 2.203153 GGCGTGGAGTGTGGTGTT 60.203 61.111 0.00 0.00 0.00 3.32
2324 2546 4.602259 CGGCGTGGAGTGTGGTGT 62.602 66.667 0.00 0.00 0.00 4.16
2336 2558 2.824041 GGCATTGATGGTCGGCGT 60.824 61.111 6.85 0.00 0.00 5.68
2352 2574 1.498865 GGTGCGTGCTTATCGGATGG 61.499 60.000 0.00 0.00 0.00 3.51
2394 2616 1.202222 ACGTAGAACCGAATAGTGGCG 60.202 52.381 0.00 0.00 0.00 5.69
2395 2617 2.573941 ACGTAGAACCGAATAGTGGC 57.426 50.000 0.00 0.00 0.00 5.01
2412 2634 5.501574 GCGGTCACTAACTCTAGTAACTACG 60.502 48.000 0.00 0.00 36.14 3.51
2413 2635 5.220758 GGCGGTCACTAACTCTAGTAACTAC 60.221 48.000 0.00 0.00 36.14 2.73
2414 2636 4.878397 GGCGGTCACTAACTCTAGTAACTA 59.122 45.833 0.00 0.00 36.14 2.24
2415 2637 3.693578 GGCGGTCACTAACTCTAGTAACT 59.306 47.826 0.00 0.00 36.14 2.24
2420 2642 1.202313 GCTGGCGGTCACTAACTCTAG 60.202 57.143 0.00 0.00 0.00 2.43
2435 2657 2.813042 GAGTGACGAGCTGCTGGC 60.813 66.667 7.01 2.02 42.19 4.85
2445 2667 1.151668 CCAGAAAGCTTGGAGTGACG 58.848 55.000 0.00 0.00 0.00 4.35
2450 2675 2.694760 GCGGCCAGAAAGCTTGGAG 61.695 63.158 7.13 1.37 0.00 3.86
2501 2727 3.595758 GGCGGGCCGAATCAATGG 61.596 66.667 33.44 0.00 0.00 3.16
2541 2767 1.154035 CCGGTGGAATTTTCGCAGC 60.154 57.895 0.00 0.00 0.00 5.25
2564 2790 2.233305 ACCACCGATCAAGTACTCCT 57.767 50.000 0.00 0.00 0.00 3.69
2565 2791 4.081807 ACTTAACCACCGATCAAGTACTCC 60.082 45.833 0.00 0.00 0.00 3.85
2566 2792 5.069501 ACTTAACCACCGATCAAGTACTC 57.930 43.478 0.00 0.00 0.00 2.59
2567 2793 5.011329 TGAACTTAACCACCGATCAAGTACT 59.989 40.000 0.00 0.00 0.00 2.73
2568 2794 5.232463 TGAACTTAACCACCGATCAAGTAC 58.768 41.667 0.00 0.00 0.00 2.73
2569 2795 5.471556 TGAACTTAACCACCGATCAAGTA 57.528 39.130 0.00 0.00 0.00 2.24
2626 2852 2.016318 CCTGTTTGTGACTTGTGAGCA 58.984 47.619 0.00 0.00 0.00 4.26
2627 2853 2.032178 GTCCTGTTTGTGACTTGTGAGC 59.968 50.000 0.00 0.00 0.00 4.26
2628 2854 2.285220 CGTCCTGTTTGTGACTTGTGAG 59.715 50.000 0.00 0.00 0.00 3.51
2629 2855 2.276201 CGTCCTGTTTGTGACTTGTGA 58.724 47.619 0.00 0.00 0.00 3.58
2630 2856 1.330521 CCGTCCTGTTTGTGACTTGTG 59.669 52.381 0.00 0.00 0.00 3.33
2631 2857 1.208535 TCCGTCCTGTTTGTGACTTGT 59.791 47.619 0.00 0.00 0.00 3.16
2756 2982 4.498520 ATCGCTCGTGTCGCAGGG 62.499 66.667 0.00 0.00 0.00 4.45
2758 2984 3.308008 CGATCGCTCGTGTCGCAG 61.308 66.667 0.26 0.00 40.07 5.18
2774 3000 5.681880 TCCAAAACGTAATTAAGTTCAGCG 58.318 37.500 15.67 3.00 0.00 5.18
2789 3015 9.239002 TGAACAAGTGTAAATAAATCCAAAACG 57.761 29.630 0.00 0.00 0.00 3.60
2802 3028 5.466728 GCTCATGTCTCTGAACAAGTGTAAA 59.533 40.000 0.00 0.00 31.81 2.01
2803 3029 4.991056 GCTCATGTCTCTGAACAAGTGTAA 59.009 41.667 0.00 0.00 31.81 2.41
2804 3030 4.560128 GCTCATGTCTCTGAACAAGTGTA 58.440 43.478 0.00 0.00 31.81 2.90
2805 3031 3.397482 GCTCATGTCTCTGAACAAGTGT 58.603 45.455 0.00 0.00 31.81 3.55
2806 3032 2.740981 GGCTCATGTCTCTGAACAAGTG 59.259 50.000 0.00 0.00 31.81 3.16
2807 3033 2.289945 GGGCTCATGTCTCTGAACAAGT 60.290 50.000 0.00 0.00 31.81 3.16
2808 3034 2.354259 GGGCTCATGTCTCTGAACAAG 58.646 52.381 0.00 0.00 31.81 3.16
2809 3035 1.338105 CGGGCTCATGTCTCTGAACAA 60.338 52.381 0.00 0.00 31.81 2.83
2810 3036 0.247460 CGGGCTCATGTCTCTGAACA 59.753 55.000 0.00 0.00 0.00 3.18
2838 3064 1.961394 CCTACTGCTATGCCCTCGTAA 59.039 52.381 0.00 0.00 0.00 3.18
2842 3068 1.710816 ACTCCTACTGCTATGCCCTC 58.289 55.000 0.00 0.00 0.00 4.30
2845 3071 2.297597 CCAGTACTCCTACTGCTATGCC 59.702 54.545 0.00 0.00 46.12 4.40
2855 3081 9.976776 CCTCAGATTATTATACCAGTACTCCTA 57.023 37.037 0.00 0.00 0.00 2.94
2856 3082 7.896496 CCCTCAGATTATTATACCAGTACTCCT 59.104 40.741 0.00 0.00 0.00 3.69
2857 3083 7.894364 TCCCTCAGATTATTATACCAGTACTCC 59.106 40.741 0.00 0.00 0.00 3.85
2859 3085 7.674772 GGTCCCTCAGATTATTATACCAGTACT 59.325 40.741 0.00 0.00 0.00 2.73
2860 3086 7.362747 CGGTCCCTCAGATTATTATACCAGTAC 60.363 44.444 0.00 0.00 0.00 2.73
2861 3087 6.662234 CGGTCCCTCAGATTATTATACCAGTA 59.338 42.308 0.00 0.00 0.00 2.74
2862 3088 5.480772 CGGTCCCTCAGATTATTATACCAGT 59.519 44.000 0.00 0.00 0.00 4.00
2863 3089 5.715279 TCGGTCCCTCAGATTATTATACCAG 59.285 44.000 0.00 0.00 0.00 4.00
2864 3090 5.647230 TCGGTCCCTCAGATTATTATACCA 58.353 41.667 0.00 0.00 0.00 3.25
2865 3091 5.715753 ACTCGGTCCCTCAGATTATTATACC 59.284 44.000 0.00 0.00 0.00 2.73
2866 3092 6.837471 ACTCGGTCCCTCAGATTATTATAC 57.163 41.667 0.00 0.00 0.00 1.47
2867 3093 8.388589 TCTTACTCGGTCCCTCAGATTATTATA 58.611 37.037 0.00 0.00 0.00 0.98
2868 3094 7.177041 GTCTTACTCGGTCCCTCAGATTATTAT 59.823 40.741 0.00 0.00 0.00 1.28
2908 3168 5.533528 TCATCCATTGCTTCCTGATAATGTG 59.466 40.000 0.00 0.00 0.00 3.21
2916 3176 3.737047 GCAACATCATCCATTGCTTCCTG 60.737 47.826 1.06 0.00 44.26 3.86
2924 3184 4.956085 CATCCATTGCAACATCATCCATT 58.044 39.130 0.00 0.00 0.00 3.16
2938 3198 4.418392 GCTTACTTGAACAGCATCCATTG 58.582 43.478 0.00 0.00 33.45 2.82
2939 3199 3.127548 CGCTTACTTGAACAGCATCCATT 59.872 43.478 0.00 0.00 32.71 3.16
2940 3200 2.679837 CGCTTACTTGAACAGCATCCAT 59.320 45.455 0.00 0.00 32.71 3.41
2941 3201 2.076100 CGCTTACTTGAACAGCATCCA 58.924 47.619 0.00 0.00 32.71 3.41
2942 3202 1.202076 GCGCTTACTTGAACAGCATCC 60.202 52.381 0.00 0.00 32.71 3.51
2943 3203 1.202076 GGCGCTTACTTGAACAGCATC 60.202 52.381 7.64 0.00 32.71 3.91
2944 3204 0.804989 GGCGCTTACTTGAACAGCAT 59.195 50.000 7.64 0.00 32.71 3.79
2945 3205 1.234615 GGGCGCTTACTTGAACAGCA 61.235 55.000 7.64 0.00 32.71 4.41
2946 3206 1.502190 GGGCGCTTACTTGAACAGC 59.498 57.895 7.64 0.00 0.00 4.40
2964 3461 1.081892 CGAGTTCAATGCCTGACAGG 58.918 55.000 17.83 17.83 38.80 4.00
2983 3480 2.434359 CCCGCTTGAGAACCGGAC 60.434 66.667 9.46 0.99 44.55 4.79
2989 3486 2.281484 GCCACACCCGCTTGAGAA 60.281 61.111 0.00 0.00 0.00 2.87
3043 3540 3.432378 AGATCGGTTCCTCTGTACAAGT 58.568 45.455 0.00 0.00 0.00 3.16
3052 3552 1.087501 GGCACAAAGATCGGTTCCTC 58.912 55.000 0.00 0.00 0.00 3.71
3105 3605 0.762842 TACCCTCCCCATCATCACGG 60.763 60.000 0.00 0.00 0.00 4.94
3117 3618 1.096416 CACTGTCTCTCGTACCCTCC 58.904 60.000 0.00 0.00 0.00 4.30
3118 3619 2.110901 TCACTGTCTCTCGTACCCTC 57.889 55.000 0.00 0.00 0.00 4.30
3133 3634 3.179443 ACGTTATCATTCCGCATCACT 57.821 42.857 0.00 0.00 0.00 3.41
3135 3636 3.047093 CGTACGTTATCATTCCGCATCA 58.953 45.455 7.22 0.00 0.00 3.07
3142 3643 8.119226 AGTACAGTAAGTCGTACGTTATCATTC 58.881 37.037 16.05 0.43 42.26 2.67
3152 3653 3.119919 AGCAGCAGTACAGTAAGTCGTAC 60.120 47.826 0.00 0.00 38.61 3.67
3169 3673 9.429359 ACATATTCAGAATAGTAATACAGCAGC 57.571 33.333 8.82 0.00 0.00 5.25
3174 3678 9.908152 CCGTCACATATTCAGAATAGTAATACA 57.092 33.333 8.82 0.00 0.00 2.29
3181 3685 5.842907 TCCACCGTCACATATTCAGAATAG 58.157 41.667 8.82 4.15 0.00 1.73
3198 3702 2.203252 CCCTGCCATCATCCACCG 60.203 66.667 0.00 0.00 0.00 4.94
3343 3849 3.673867 GACGGACGTACGCCCTCAC 62.674 68.421 22.56 5.99 37.37 3.51
3354 3862 2.798262 GACGAACCACGACGGACG 60.798 66.667 0.00 0.00 45.77 4.79
3359 3867 2.798262 CCGACGACGAACCACGAC 60.798 66.667 9.28 0.00 45.77 4.34
3363 3871 2.659244 GTTGCCGACGACGAACCA 60.659 61.111 9.28 0.05 42.66 3.67
3387 3914 6.743575 AACAACAACAGAGGATTATACAGC 57.256 37.500 0.00 0.00 0.00 4.40
3389 3916 6.432783 CCCAAACAACAACAGAGGATTATACA 59.567 38.462 0.00 0.00 0.00 2.29
3391 3918 6.432783 CACCCAAACAACAACAGAGGATTATA 59.567 38.462 0.00 0.00 0.00 0.98
3392 3919 5.243730 CACCCAAACAACAACAGAGGATTAT 59.756 40.000 0.00 0.00 0.00 1.28
3430 3967 0.607489 CCACCCAAGCTCCAGACAAG 60.607 60.000 0.00 0.00 0.00 3.16
3449 3986 2.100631 CAGCCGACCGAATCACACC 61.101 63.158 0.00 0.00 0.00 4.16
3486 4041 6.223138 TCGTCACAAATACTGTTTCATGTC 57.777 37.500 0.00 0.00 35.47 3.06
3507 4062 3.026630 AGCCATCATATGTACCGTTCG 57.973 47.619 1.90 0.00 0.00 3.95
3512 4067 4.013267 AGAGCAAGCCATCATATGTACC 57.987 45.455 1.90 0.00 0.00 3.34
3548 4103 2.195741 AGACAGACGCACTACTACCA 57.804 50.000 0.00 0.00 0.00 3.25
3549 4104 3.309410 GTCTAGACAGACGCACTACTACC 59.691 52.174 18.20 0.00 41.79 3.18
3550 4105 4.519191 GTCTAGACAGACGCACTACTAC 57.481 50.000 18.20 0.00 41.79 2.73
3629 5671 0.951040 GTGGCTAGTGAGTGGTGCAC 60.951 60.000 8.80 8.80 36.53 4.57
3630 5672 1.371183 GTGGCTAGTGAGTGGTGCA 59.629 57.895 0.00 0.00 0.00 4.57
3631 5673 0.671781 CTGTGGCTAGTGAGTGGTGC 60.672 60.000 0.00 0.00 0.00 5.01
3639 5681 4.872691 CCAAGATTTCTACTGTGGCTAGTG 59.127 45.833 5.44 0.00 32.19 2.74
3640 5682 4.624125 GCCAAGATTTCTACTGTGGCTAGT 60.624 45.833 11.90 0.99 46.42 2.57
3641 5683 3.873952 GCCAAGATTTCTACTGTGGCTAG 59.126 47.826 11.90 0.00 46.42 3.42
3642 5684 3.873910 GCCAAGATTTCTACTGTGGCTA 58.126 45.455 11.90 0.00 46.42 3.93
3643 5685 2.716217 GCCAAGATTTCTACTGTGGCT 58.284 47.619 11.90 0.00 46.42 4.75
3645 5687 3.012518 CCAGCCAAGATTTCTACTGTGG 58.987 50.000 0.00 0.00 0.00 4.17
3646 5688 2.421424 GCCAGCCAAGATTTCTACTGTG 59.579 50.000 0.00 0.00 0.00 3.66
3686 5728 2.306255 ATATGGTGGACGTGGACCGC 62.306 60.000 0.00 0.00 41.42 5.68
3695 5737 2.289072 CGATGGTGAGGATATGGTGGAC 60.289 54.545 0.00 0.00 0.00 4.02
3696 5738 1.970640 CGATGGTGAGGATATGGTGGA 59.029 52.381 0.00 0.00 0.00 4.02
3697 5739 1.002430 CCGATGGTGAGGATATGGTGG 59.998 57.143 0.00 0.00 0.00 4.61
3698 5740 1.609061 GCCGATGGTGAGGATATGGTG 60.609 57.143 0.00 0.00 0.00 4.17
3699 5741 0.687354 GCCGATGGTGAGGATATGGT 59.313 55.000 0.00 0.00 0.00 3.55
3700 5742 0.036010 GGCCGATGGTGAGGATATGG 60.036 60.000 0.00 0.00 0.00 2.74
3721 5763 3.244422 TGGTCCAACAATAGTCTGTGTCC 60.244 47.826 0.00 0.00 0.00 4.02
3723 5765 3.740115 GTGGTCCAACAATAGTCTGTGT 58.260 45.455 0.00 0.00 0.00 3.72
3751 5794 4.681781 GCACTATCAGGCGCATATAAGGAT 60.682 45.833 10.83 3.07 0.00 3.24
3752 5795 3.368427 GCACTATCAGGCGCATATAAGGA 60.368 47.826 10.83 0.00 0.00 3.36
3754 5797 3.615937 CAGCACTATCAGGCGCATATAAG 59.384 47.826 10.83 2.11 34.54 1.73
3755 5798 3.006859 ACAGCACTATCAGGCGCATATAA 59.993 43.478 10.83 0.00 34.54 0.98
3756 5799 2.562738 ACAGCACTATCAGGCGCATATA 59.437 45.455 10.83 2.41 34.54 0.86
3757 5800 1.345741 ACAGCACTATCAGGCGCATAT 59.654 47.619 10.83 1.10 34.54 1.78
3787 5830 1.814169 GCCTACTTACAGTGCGCCC 60.814 63.158 4.18 0.00 0.00 6.13
3799 6581 0.983378 ATCCGGAAAGGCAGCCTACT 60.983 55.000 16.56 4.76 40.77 2.57
3805 6607 3.198872 GTCTAGAAATCCGGAAAGGCAG 58.801 50.000 9.01 3.63 40.77 4.85
3880 6688 9.627657 GGTAAATAGAAACGAAAAAGCAAAAAC 57.372 29.630 0.00 0.00 0.00 2.43
3996 6820 2.983803 TCGCTTTAATTTTTCTTGCGGC 59.016 40.909 0.00 0.00 41.82 6.53
4052 6987 5.242838 TCATTCGCTTGTATTTGTTTCCCTT 59.757 36.000 0.00 0.00 0.00 3.95
4055 6990 7.401484 TTTTCATTCGCTTGTATTTGTTTCC 57.599 32.000 0.00 0.00 0.00 3.13
4086 7023 2.336088 GCCGCACATGTGTTGCTT 59.664 55.556 26.01 0.00 0.00 3.91
4088 7025 4.024143 TCGCCGCACATGTGTTGC 62.024 61.111 26.01 24.59 0.00 4.17
4093 7030 1.089481 CCATTAGTCGCCGCACATGT 61.089 55.000 0.00 0.00 0.00 3.21
4095 7032 1.523711 CCCATTAGTCGCCGCACAT 60.524 57.895 0.00 0.00 0.00 3.21
4115 7052 2.511600 CTAACCTCTTGGGCGGCG 60.512 66.667 0.51 0.51 39.10 6.46
4118 7055 2.109126 GCAGCTAACCTCTTGGGCG 61.109 63.158 0.00 0.00 39.10 6.13
4124 7061 4.148825 CGCCCGCAGCTAACCTCT 62.149 66.667 0.00 0.00 40.39 3.69
4172 7109 5.419542 ACTGCTTCATTAGTGATTTCGCTA 58.580 37.500 0.00 0.00 37.87 4.26
4175 7112 6.291322 CGAGTACTGCTTCATTAGTGATTTCG 60.291 42.308 0.00 0.00 33.56 3.46
4176 7113 6.531948 ACGAGTACTGCTTCATTAGTGATTTC 59.468 38.462 0.00 0.00 33.56 2.17
4177 7114 6.398918 ACGAGTACTGCTTCATTAGTGATTT 58.601 36.000 0.00 0.00 33.56 2.17
4178 7115 5.967088 ACGAGTACTGCTTCATTAGTGATT 58.033 37.500 0.00 0.00 33.56 2.57
4179 7116 5.584253 ACGAGTACTGCTTCATTAGTGAT 57.416 39.130 0.00 0.00 33.56 3.06
4180 7117 5.161358 CAACGAGTACTGCTTCATTAGTGA 58.839 41.667 0.00 0.00 0.00 3.41
4181 7118 4.201628 GCAACGAGTACTGCTTCATTAGTG 60.202 45.833 0.00 0.00 35.62 2.74
4182 7119 3.927142 GCAACGAGTACTGCTTCATTAGT 59.073 43.478 0.00 0.00 35.62 2.24
4183 7120 3.926527 TGCAACGAGTACTGCTTCATTAG 59.073 43.478 0.00 0.00 39.38 1.73
4184 7121 3.920446 TGCAACGAGTACTGCTTCATTA 58.080 40.909 0.00 0.00 39.38 1.90
4185 7122 2.766313 TGCAACGAGTACTGCTTCATT 58.234 42.857 0.00 0.00 39.38 2.57
4186 7123 2.455674 TGCAACGAGTACTGCTTCAT 57.544 45.000 0.00 0.00 39.38 2.57
4187 7124 2.232756 TTGCAACGAGTACTGCTTCA 57.767 45.000 0.00 0.00 39.38 3.02
4188 7125 2.800544 TCTTTGCAACGAGTACTGCTTC 59.199 45.455 0.00 0.00 39.38 3.86
4189 7126 2.833794 TCTTTGCAACGAGTACTGCTT 58.166 42.857 0.00 0.00 39.38 3.91
4190 7127 2.526304 TCTTTGCAACGAGTACTGCT 57.474 45.000 0.00 0.00 39.38 4.24
4191 7128 2.286833 TGTTCTTTGCAACGAGTACTGC 59.713 45.455 0.00 0.00 39.09 4.40
4192 7129 3.555956 AGTGTTCTTTGCAACGAGTACTG 59.444 43.478 17.47 0.00 0.00 2.74
4193 7130 3.793559 AGTGTTCTTTGCAACGAGTACT 58.206 40.909 14.37 14.37 0.00 2.73
4194 7131 3.059800 GGAGTGTTCTTTGCAACGAGTAC 60.060 47.826 0.00 6.11 0.00 2.73
4195 7132 3.128349 GGAGTGTTCTTTGCAACGAGTA 58.872 45.455 0.00 0.00 0.00 2.59
4196 7133 1.940613 GGAGTGTTCTTTGCAACGAGT 59.059 47.619 0.00 0.00 0.00 4.18
4197 7134 1.939934 TGGAGTGTTCTTTGCAACGAG 59.060 47.619 0.00 0.00 0.00 4.18
4198 7135 1.668751 GTGGAGTGTTCTTTGCAACGA 59.331 47.619 0.00 0.00 0.00 3.85
4199 7136 1.268539 GGTGGAGTGTTCTTTGCAACG 60.269 52.381 0.00 0.00 0.00 4.10
4200 7137 2.024414 AGGTGGAGTGTTCTTTGCAAC 58.976 47.619 0.00 0.00 0.00 4.17
4201 7138 2.435372 AGGTGGAGTGTTCTTTGCAA 57.565 45.000 0.00 0.00 0.00 4.08
4202 7139 2.435372 AAGGTGGAGTGTTCTTTGCA 57.565 45.000 0.00 0.00 0.00 4.08
4203 7140 3.130340 TGAAAAGGTGGAGTGTTCTTTGC 59.870 43.478 0.00 0.00 30.89 3.68
4204 7141 4.202050 CCTGAAAAGGTGGAGTGTTCTTTG 60.202 45.833 0.00 0.00 30.89 2.77
4205 7142 3.954258 CCTGAAAAGGTGGAGTGTTCTTT 59.046 43.478 0.00 0.00 0.00 2.52
4206 7143 3.053619 ACCTGAAAAGGTGGAGTGTTCTT 60.054 43.478 0.00 0.00 41.33 2.52
4207 7144 2.509964 ACCTGAAAAGGTGGAGTGTTCT 59.490 45.455 0.00 0.00 41.33 3.01
4208 7145 2.879026 GACCTGAAAAGGTGGAGTGTTC 59.121 50.000 1.25 0.00 43.24 3.18
4209 7146 2.745152 CGACCTGAAAAGGTGGAGTGTT 60.745 50.000 1.25 0.00 43.24 3.32
4210 7147 1.202651 CGACCTGAAAAGGTGGAGTGT 60.203 52.381 1.25 0.00 43.24 3.55
4211 7148 1.202651 ACGACCTGAAAAGGTGGAGTG 60.203 52.381 13.07 0.00 43.24 3.51
4212 7149 1.129058 ACGACCTGAAAAGGTGGAGT 58.871 50.000 13.07 3.32 43.24 3.85
4213 7150 1.070134 TCACGACCTGAAAAGGTGGAG 59.930 52.381 13.07 6.05 43.24 3.86
4214 7151 1.124780 TCACGACCTGAAAAGGTGGA 58.875 50.000 13.07 1.10 43.24 4.02
4215 7152 1.226746 GTCACGACCTGAAAAGGTGG 58.773 55.000 1.25 3.66 43.24 4.61
4216 7153 1.948104 TGTCACGACCTGAAAAGGTG 58.052 50.000 1.25 0.00 43.24 4.00
4217 7154 2.093128 ACTTGTCACGACCTGAAAAGGT 60.093 45.455 8.75 0.00 45.58 3.50
4218 7155 2.287915 CACTTGTCACGACCTGAAAAGG 59.712 50.000 8.75 0.00 45.58 3.11
4219 7156 3.001330 GTCACTTGTCACGACCTGAAAAG 59.999 47.826 3.52 3.52 46.42 2.27
4220 7157 2.933906 GTCACTTGTCACGACCTGAAAA 59.066 45.455 0.00 0.00 0.00 2.29
4221 7158 2.546778 GTCACTTGTCACGACCTGAAA 58.453 47.619 0.00 0.00 0.00 2.69
4222 7159 1.535226 CGTCACTTGTCACGACCTGAA 60.535 52.381 0.00 0.00 38.32 3.02
4223 7160 0.030235 CGTCACTTGTCACGACCTGA 59.970 55.000 0.00 0.00 38.32 3.86
4224 7161 1.548973 GCGTCACTTGTCACGACCTG 61.549 60.000 0.65 0.00 38.32 4.00
4225 7162 1.299926 GCGTCACTTGTCACGACCT 60.300 57.895 0.65 0.00 38.32 3.85
4226 7163 1.590525 TGCGTCACTTGTCACGACC 60.591 57.895 0.65 0.00 38.32 4.79
4227 7164 1.143373 TGTGCGTCACTTGTCACGAC 61.143 55.000 0.65 0.00 38.32 4.34
4228 7165 0.249280 ATGTGCGTCACTTGTCACGA 60.249 50.000 0.65 0.00 38.32 4.35
4229 7166 1.124297 GTATGTGCGTCACTTGTCACG 59.876 52.381 10.54 0.00 39.09 4.35
4230 7167 2.131972 TGTATGTGCGTCACTTGTCAC 58.868 47.619 10.54 0.00 35.11 3.67
4231 7168 2.403259 CTGTATGTGCGTCACTTGTCA 58.597 47.619 10.54 7.80 35.11 3.58
4232 7169 1.126846 GCTGTATGTGCGTCACTTGTC 59.873 52.381 10.54 4.68 35.11 3.18
4233 7170 1.148310 GCTGTATGTGCGTCACTTGT 58.852 50.000 10.54 1.70 35.11 3.16
4234 7171 3.955429 GCTGTATGTGCGTCACTTG 57.045 52.632 10.54 0.00 35.11 3.16
4243 7180 2.390599 AAGTGGCGCGCTGTATGTG 61.391 57.895 32.29 0.00 0.00 3.21
4244 7181 2.047274 AAGTGGCGCGCTGTATGT 60.047 55.556 32.29 8.91 0.00 2.29
4245 7182 2.296692 GACAAGTGGCGCGCTGTATG 62.297 60.000 32.29 24.94 0.00 2.39
4246 7183 2.047274 ACAAGTGGCGCGCTGTAT 60.047 55.556 32.29 12.65 0.00 2.29
4247 7184 2.736995 GACAAGTGGCGCGCTGTA 60.737 61.111 32.29 15.13 0.00 2.74
4248 7185 4.908687 TGACAAGTGGCGCGCTGT 62.909 61.111 32.29 26.57 0.00 4.40
4249 7186 4.374702 GTGACAAGTGGCGCGCTG 62.375 66.667 32.29 23.28 0.00 5.18
4250 7187 4.908687 TGTGACAAGTGGCGCGCT 62.909 61.111 32.29 10.06 36.03 5.92
4251 7188 3.862063 CTTGTGACAAGTGGCGCGC 62.862 63.158 25.94 25.94 36.03 6.86
4252 7189 2.249309 CTTGTGACAAGTGGCGCG 59.751 61.111 16.84 0.00 36.03 6.86
4253 7190 2.050985 GCTTGTGACAAGTGGCGC 60.051 61.111 24.51 8.82 0.00 6.53
4254 7191 1.280746 CAGCTTGTGACAAGTGGCG 59.719 57.895 24.51 8.70 0.00 5.69
4255 7192 1.656441 CCAGCTTGTGACAAGTGGC 59.344 57.895 24.51 12.88 0.00 5.01
4256 7193 0.179020 TCCCAGCTTGTGACAAGTGG 60.179 55.000 26.18 26.18 0.00 4.00
4257 7194 1.233019 CTCCCAGCTTGTGACAAGTG 58.767 55.000 24.51 19.63 0.00 3.16
4258 7195 0.839946 ACTCCCAGCTTGTGACAAGT 59.160 50.000 24.51 10.31 0.00 3.16
4259 7196 1.972872 AACTCCCAGCTTGTGACAAG 58.027 50.000 20.42 20.42 0.00 3.16
4260 7197 2.435372 AAACTCCCAGCTTGTGACAA 57.565 45.000 0.00 0.00 0.00 3.18
4261 7198 2.297701 GAAAACTCCCAGCTTGTGACA 58.702 47.619 0.00 0.00 0.00 3.58
4262 7199 1.609072 GGAAAACTCCCAGCTTGTGAC 59.391 52.381 0.00 0.00 0.00 3.67
4263 7200 1.494721 AGGAAAACTCCCAGCTTGTGA 59.505 47.619 0.00 0.00 0.00 3.58
4264 7201 1.986882 AGGAAAACTCCCAGCTTGTG 58.013 50.000 0.00 0.00 0.00 3.33
4265 7202 2.755952 AAGGAAAACTCCCAGCTTGT 57.244 45.000 0.00 0.00 0.00 3.16
4266 7203 4.406648 AAAAAGGAAAACTCCCAGCTTG 57.593 40.909 0.00 0.00 0.00 4.01
4317 7254 8.397906 CGAGATTTAGATGCATGGTTTAAAAGA 58.602 33.333 2.46 0.00 0.00 2.52
4318 7255 8.397906 TCGAGATTTAGATGCATGGTTTAAAAG 58.602 33.333 2.46 0.00 0.00 2.27
4319 7256 8.275015 TCGAGATTTAGATGCATGGTTTAAAA 57.725 30.769 2.46 0.00 0.00 1.52
4320 7257 7.857734 TCGAGATTTAGATGCATGGTTTAAA 57.142 32.000 2.46 4.47 0.00 1.52
4321 7258 7.857734 TTCGAGATTTAGATGCATGGTTTAA 57.142 32.000 2.46 0.00 0.00 1.52
4323 7260 6.949352 ATTCGAGATTTAGATGCATGGTTT 57.051 33.333 2.46 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.