Multiple sequence alignment - TraesCS3A01G356400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G356400 chr3A 100.000 2088 0 0 421 2508 603925258 603927345 0.000000e+00 3856.0
1 TraesCS3A01G356400 chr3A 100.000 1805 0 0 2787 4591 603927624 603929428 0.000000e+00 3334.0
2 TraesCS3A01G356400 chr3A 80.254 552 85 21 3333 3877 701361877 701362411 1.200000e-105 394.0
3 TraesCS3A01G356400 chr3A 100.000 158 0 0 1 158 603924838 603924995 4.490000e-75 292.0
4 TraesCS3A01G356400 chr3A 92.683 41 3 0 3052 3092 701361434 701361474 4.960000e-05 60.2
5 TraesCS3A01G356400 chr3D 91.351 1399 89 12 732 2127 461661631 461663000 0.000000e+00 1884.0
6 TraesCS3A01G356400 chr3D 93.237 902 44 9 3094 3992 461663976 461664863 0.000000e+00 1312.0
7 TraesCS3A01G356400 chr3D 90.385 364 23 9 2154 2508 461663099 461663459 6.950000e-128 468.0
8 TraesCS3A01G356400 chr3D 80.249 562 82 25 3333 3887 568036344 568036883 3.330000e-106 396.0
9 TraesCS3A01G356400 chr3D 91.235 251 19 3 2787 3036 461663507 461663755 5.690000e-89 339.0
10 TraesCS3A01G356400 chr3D 78.078 333 45 12 3231 3543 569804420 569804096 7.840000e-43 185.0
11 TraesCS3A01G356400 chr3D 92.593 54 4 0 3039 3092 461663847 461663900 1.370000e-10 78.7
12 TraesCS3A01G356400 chr3D 92.683 41 3 0 3052 3092 568035901 568035941 4.960000e-05 60.2
13 TraesCS3A01G356400 chr3B 90.422 1138 72 16 675 1792 612408351 612409471 0.000000e+00 1463.0
14 TraesCS3A01G356400 chr3B 89.900 703 34 14 3094 3770 612410801 612411492 0.000000e+00 870.0
15 TraesCS3A01G356400 chr3B 87.664 381 35 8 2130 2508 612409900 612410270 2.540000e-117 433.0
16 TraesCS3A01G356400 chr3B 91.339 254 20 2 2788 3039 612410319 612410572 3.400000e-91 346.0
17 TraesCS3A01G356400 chr3B 96.216 185 7 0 3768 3952 612411561 612411745 2.080000e-78 303.0
18 TraesCS3A01G356400 chr3B 78.769 325 33 18 1799 2096 612409513 612409828 7.840000e-43 185.0
19 TraesCS3A01G356400 chr1A 98.606 574 8 0 4018 4591 35147604 35148177 0.000000e+00 1016.0
20 TraesCS3A01G356400 chr2A 87.850 428 52 0 4018 4445 197514338 197513911 1.910000e-138 503.0
21 TraesCS3A01G356400 chr2A 91.391 151 13 0 4441 4591 197496292 197496142 1.670000e-49 207.0
22 TraesCS3A01G356400 chr1B 85.714 420 60 0 4172 4591 393528546 393528127 1.170000e-120 444.0
23 TraesCS3A01G356400 chr1B 90.698 43 4 0 8 50 394915163 394915205 1.780000e-04 58.4
24 TraesCS3A01G356400 chr1B 94.286 35 2 0 88 122 322932765 322932799 2.000000e-03 54.7
25 TraesCS3A01G356400 chrUn 79.832 476 76 15 3336 3806 41006455 41005995 3.420000e-86 329.0
26 TraesCS3A01G356400 chrUn 79.749 479 77 15 3333 3806 307830978 307831441 3.420000e-86 329.0
27 TraesCS3A01G356400 chrUn 83.673 245 29 10 3342 3581 40928672 40928434 2.150000e-53 220.0
28 TraesCS3A01G356400 chr5D 73.034 534 113 15 4047 4575 413616504 413617011 4.750000e-35 159.0
29 TraesCS3A01G356400 chr5D 81.215 181 30 2 4036 4216 413667766 413667942 4.790000e-30 143.0
30 TraesCS3A01G356400 chr5D 94.444 36 0 2 88 122 386103273 386103307 2.000000e-03 54.7
31 TraesCS3A01G356400 chr5B 80.925 173 33 0 4033 4205 498808134 498808306 2.230000e-28 137.0
32 TraesCS3A01G356400 chr4A 97.143 35 1 0 88 122 699563364 699563330 4.960000e-05 60.2
33 TraesCS3A01G356400 chr6A 92.308 39 3 0 88 126 2870380 2870418 6.420000e-04 56.5
34 TraesCS3A01G356400 chr7D 94.286 35 2 0 88 122 59112961 59112995 2.000000e-03 54.7
35 TraesCS3A01G356400 chr7D 94.286 35 2 0 88 122 139869094 139869128 2.000000e-03 54.7
36 TraesCS3A01G356400 chr7D 88.636 44 5 0 79 122 353912466 353912509 2.000000e-03 54.7
37 TraesCS3A01G356400 chr7D 94.286 35 2 0 88 122 626207256 626207222 2.000000e-03 54.7
38 TraesCS3A01G356400 chr6B 100.000 29 0 0 7 35 179371129 179371101 2.000000e-03 54.7
39 TraesCS3A01G356400 chr4D 94.286 35 2 0 88 122 339247662 339247696 2.000000e-03 54.7
40 TraesCS3A01G356400 chr2B 100.000 29 0 0 7 35 56530317 56530289 2.000000e-03 54.7
41 TraesCS3A01G356400 chr1D 100.000 29 0 0 7 35 22743930 22743902 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G356400 chr3A 603924838 603929428 4590 False 2494.00 3856 100.000000 1 4591 3 chr3A.!!$F1 4590
1 TraesCS3A01G356400 chr3A 701361434 701362411 977 False 227.10 394 86.468500 3052 3877 2 chr3A.!!$F2 825
2 TraesCS3A01G356400 chr3D 461661631 461664863 3232 False 816.34 1884 91.760200 732 3992 5 chr3D.!!$F1 3260
3 TraesCS3A01G356400 chr3D 568035901 568036883 982 False 228.10 396 86.466000 3052 3887 2 chr3D.!!$F2 835
4 TraesCS3A01G356400 chr3B 612408351 612411745 3394 False 600.00 1463 89.051667 675 3952 6 chr3B.!!$F1 3277
5 TraesCS3A01G356400 chr1A 35147604 35148177 573 False 1016.00 1016 98.606000 4018 4591 1 chr1A.!!$F1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
491 492 0.031721 ATCGGATCCGTACCTTTCGC 59.968 55.0 32.15 0.0 40.74 4.70 F
741 742 0.036199 CCGGTACCCAATGAAACGGA 60.036 55.0 6.25 0.0 42.19 4.69 F
1951 2006 0.524392 GATCTCACACTCGCGTCCAG 60.524 60.0 5.77 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1342 1345 0.033504 AGCGACTTCTCGAAAGCCAA 59.966 50.0 7.10 0.0 43.06 4.52 R
2065 2146 0.404040 TCTGCAGTAAAACCTGGGGG 59.596 55.0 14.67 0.0 38.88 5.40 R
3884 4431 0.245539 ATGTGCTGTTGCTGGATTGC 59.754 50.0 0.00 0.0 40.48 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.343758 GTGCCTCTCACGGAAGCA 59.656 61.111 0.00 0.00 38.87 3.91
24 25 1.301716 GTGCCTCTCACGGAAGCAA 60.302 57.895 0.00 0.00 42.24 3.91
25 26 0.884704 GTGCCTCTCACGGAAGCAAA 60.885 55.000 0.00 0.00 42.24 3.68
26 27 0.884704 TGCCTCTCACGGAAGCAAAC 60.885 55.000 0.00 0.00 38.32 2.93
27 28 1.578206 GCCTCTCACGGAAGCAAACC 61.578 60.000 0.00 0.00 32.03 3.27
28 29 0.955919 CCTCTCACGGAAGCAAACCC 60.956 60.000 0.00 0.00 0.00 4.11
33 34 4.038080 CGGAAGCAAACCCGTGCC 62.038 66.667 0.00 0.00 46.14 5.01
34 35 2.597510 GGAAGCAAACCCGTGCCT 60.598 61.111 0.00 0.00 46.14 4.75
35 36 2.200337 GGAAGCAAACCCGTGCCTT 61.200 57.895 0.00 0.00 46.14 4.35
36 37 1.285950 GAAGCAAACCCGTGCCTTC 59.714 57.895 0.00 0.00 46.14 3.46
37 38 1.452145 GAAGCAAACCCGTGCCTTCA 61.452 55.000 0.00 0.00 46.14 3.02
38 39 0.827507 AAGCAAACCCGTGCCTTCAT 60.828 50.000 0.00 0.00 46.14 2.57
39 40 1.080569 GCAAACCCGTGCCTTCATG 60.081 57.895 0.00 0.00 38.66 3.07
40 41 1.523154 GCAAACCCGTGCCTTCATGA 61.523 55.000 0.00 0.00 38.66 3.07
41 42 0.523072 CAAACCCGTGCCTTCATGAG 59.477 55.000 0.00 0.00 0.00 2.90
42 43 0.400213 AAACCCGTGCCTTCATGAGA 59.600 50.000 0.00 0.00 0.00 3.27
43 44 0.400213 AACCCGTGCCTTCATGAGAA 59.600 50.000 0.00 0.00 0.00 2.87
59 60 9.118300 CTTCATGAGAAGCAAATTTATACCTCT 57.882 33.333 0.00 0.00 44.25 3.69
60 61 8.668510 TCATGAGAAGCAAATTTATACCTCTC 57.331 34.615 0.00 0.00 0.00 3.20
61 62 8.267183 TCATGAGAAGCAAATTTATACCTCTCA 58.733 33.333 14.09 14.09 35.42 3.27
62 63 7.849804 TGAGAAGCAAATTTATACCTCTCAC 57.150 36.000 10.21 0.00 0.00 3.51
63 64 6.535150 TGAGAAGCAAATTTATACCTCTCACG 59.465 38.462 10.21 0.00 0.00 4.35
64 65 5.817816 AGAAGCAAATTTATACCTCTCACGG 59.182 40.000 0.00 0.00 0.00 4.94
65 66 5.353394 AGCAAATTTATACCTCTCACGGA 57.647 39.130 0.00 0.00 0.00 4.69
66 67 5.741011 AGCAAATTTATACCTCTCACGGAA 58.259 37.500 0.00 0.00 0.00 4.30
67 68 5.817816 AGCAAATTTATACCTCTCACGGAAG 59.182 40.000 0.00 0.00 0.00 3.46
68 69 5.504173 GCAAATTTATACCTCTCACGGAAGC 60.504 44.000 0.00 0.00 0.00 3.86
69 70 5.353394 AATTTATACCTCTCACGGAAGCA 57.647 39.130 0.00 0.00 0.00 3.91
70 71 4.811969 TTTATACCTCTCACGGAAGCAA 57.188 40.909 0.00 0.00 0.00 3.91
71 72 5.353394 TTTATACCTCTCACGGAAGCAAT 57.647 39.130 0.00 0.00 0.00 3.56
72 73 3.914426 ATACCTCTCACGGAAGCAATT 57.086 42.857 0.00 0.00 0.00 2.32
73 74 2.568623 ACCTCTCACGGAAGCAATTT 57.431 45.000 0.00 0.00 0.00 1.82
74 75 2.863809 ACCTCTCACGGAAGCAATTTT 58.136 42.857 0.00 0.00 0.00 1.82
75 76 3.222603 ACCTCTCACGGAAGCAATTTTT 58.777 40.909 0.00 0.00 0.00 1.94
95 96 1.593196 TTTCTCAAGAGGCACAACCG 58.407 50.000 0.00 0.00 46.52 4.44
96 97 0.468226 TTCTCAAGAGGCACAACCGT 59.532 50.000 0.00 0.00 46.52 4.83
97 98 0.249868 TCTCAAGAGGCACAACCGTG 60.250 55.000 0.00 0.00 46.52 4.94
105 106 4.268687 CACAACCGTGCCTCTCTC 57.731 61.111 0.00 0.00 36.06 3.20
106 107 1.734477 CACAACCGTGCCTCTCTCG 60.734 63.158 0.00 0.00 36.06 4.04
111 112 2.202676 CGTGCCTCTCTCGGAAGC 60.203 66.667 0.00 0.00 32.35 3.86
112 113 2.973899 GTGCCTCTCTCGGAAGCA 59.026 61.111 0.00 0.00 38.87 3.91
113 114 1.293498 GTGCCTCTCTCGGAAGCAA 59.707 57.895 0.00 0.00 42.24 3.91
114 115 0.320771 GTGCCTCTCTCGGAAGCAAA 60.321 55.000 0.00 0.00 42.24 3.68
115 116 0.615331 TGCCTCTCTCGGAAGCAAAT 59.385 50.000 0.00 0.00 38.32 2.32
116 117 1.294857 GCCTCTCTCGGAAGCAAATC 58.705 55.000 0.00 0.00 32.03 2.17
117 118 1.134551 GCCTCTCTCGGAAGCAAATCT 60.135 52.381 0.00 0.00 32.03 2.40
118 119 2.548875 CCTCTCTCGGAAGCAAATCTG 58.451 52.381 0.00 0.00 0.00 2.90
119 120 2.093764 CCTCTCTCGGAAGCAAATCTGT 60.094 50.000 0.00 0.00 0.00 3.41
120 121 2.928757 CTCTCTCGGAAGCAAATCTGTG 59.071 50.000 0.00 0.00 0.00 3.66
121 122 1.396301 CTCTCGGAAGCAAATCTGTGC 59.604 52.381 0.00 0.00 45.28 4.57
130 131 3.079960 GCAAATCTGTGCATCCATGAG 57.920 47.619 0.00 0.00 44.29 2.90
131 132 2.686405 GCAAATCTGTGCATCCATGAGA 59.314 45.455 0.00 0.00 44.29 3.27
132 133 3.129813 GCAAATCTGTGCATCCATGAGAA 59.870 43.478 0.00 0.00 44.29 2.87
133 134 4.733815 GCAAATCTGTGCATCCATGAGAAG 60.734 45.833 0.00 0.00 44.29 2.85
134 135 2.034104 TCTGTGCATCCATGAGAAGC 57.966 50.000 0.00 0.00 39.69 3.86
135 136 1.279846 TCTGTGCATCCATGAGAAGCA 59.720 47.619 9.18 9.18 46.47 3.91
140 141 3.628008 TGCATCCATGAGAAGCAAATCT 58.372 40.909 10.38 0.00 45.71 2.40
141 142 3.380320 TGCATCCATGAGAAGCAAATCTG 59.620 43.478 10.38 0.00 45.71 2.90
142 143 6.229214 TGCATCCATGAGAAGCAAATCTGC 62.229 45.833 10.38 4.32 45.71 4.26
153 154 0.583438 CAAATCTGCACCTATCGCCG 59.417 55.000 0.00 0.00 0.00 6.46
154 155 0.464036 AAATCTGCACCTATCGCCGA 59.536 50.000 0.00 0.00 0.00 5.54
155 156 0.464036 AATCTGCACCTATCGCCGAA 59.536 50.000 0.00 0.00 0.00 4.30
156 157 0.249489 ATCTGCACCTATCGCCGAAC 60.249 55.000 0.00 0.00 0.00 3.95
157 158 1.883084 CTGCACCTATCGCCGAACC 60.883 63.158 0.00 0.00 0.00 3.62
442 443 4.868268 TCTAGAGGCATAACTGTACCACT 58.132 43.478 0.00 0.00 0.00 4.00
443 444 4.888239 TCTAGAGGCATAACTGTACCACTC 59.112 45.833 0.00 0.00 0.00 3.51
444 445 3.441101 AGAGGCATAACTGTACCACTCA 58.559 45.455 0.00 0.00 0.00 3.41
445 446 3.195825 AGAGGCATAACTGTACCACTCAC 59.804 47.826 0.00 0.00 0.00 3.51
446 447 2.094182 AGGCATAACTGTACCACTCACG 60.094 50.000 0.00 0.00 0.00 4.35
447 448 2.268298 GCATAACTGTACCACTCACGG 58.732 52.381 0.00 0.00 0.00 4.94
448 449 2.094390 GCATAACTGTACCACTCACGGA 60.094 50.000 0.00 0.00 0.00 4.69
449 450 3.615592 GCATAACTGTACCACTCACGGAA 60.616 47.826 0.00 0.00 0.00 4.30
450 451 2.814280 AACTGTACCACTCACGGAAG 57.186 50.000 0.00 0.00 0.00 3.46
451 452 0.317479 ACTGTACCACTCACGGAAGC 59.683 55.000 0.00 0.00 0.00 3.86
452 453 0.317160 CTGTACCACTCACGGAAGCA 59.683 55.000 0.00 0.00 0.00 3.91
453 454 0.753867 TGTACCACTCACGGAAGCAA 59.246 50.000 0.00 0.00 0.00 3.91
454 455 1.139256 TGTACCACTCACGGAAGCAAA 59.861 47.619 0.00 0.00 0.00 3.68
455 456 2.224426 TGTACCACTCACGGAAGCAAAT 60.224 45.455 0.00 0.00 0.00 2.32
456 457 1.981256 ACCACTCACGGAAGCAAATT 58.019 45.000 0.00 0.00 0.00 1.82
457 458 2.306847 ACCACTCACGGAAGCAAATTT 58.693 42.857 0.00 0.00 0.00 1.82
458 459 2.034558 ACCACTCACGGAAGCAAATTTG 59.965 45.455 14.03 14.03 0.00 2.32
459 460 2.034558 CCACTCACGGAAGCAAATTTGT 59.965 45.455 19.03 0.26 0.00 2.83
460 461 3.044986 CACTCACGGAAGCAAATTTGTG 58.955 45.455 19.03 8.68 0.00 3.33
461 462 2.687935 ACTCACGGAAGCAAATTTGTGT 59.312 40.909 19.03 7.66 32.41 3.72
462 463 3.243068 ACTCACGGAAGCAAATTTGTGTC 60.243 43.478 19.03 15.23 32.41 3.67
463 464 2.948979 TCACGGAAGCAAATTTGTGTCT 59.051 40.909 19.03 5.59 32.41 3.41
464 465 3.003275 TCACGGAAGCAAATTTGTGTCTC 59.997 43.478 19.03 10.25 32.41 3.36
465 466 2.293399 ACGGAAGCAAATTTGTGTCTCC 59.707 45.455 19.03 16.46 0.00 3.71
466 467 2.293122 CGGAAGCAAATTTGTGTCTCCA 59.707 45.455 19.03 0.00 0.00 3.86
467 468 3.642705 GGAAGCAAATTTGTGTCTCCAC 58.357 45.455 19.03 0.45 42.19 4.02
477 478 2.743636 GTGTCTCCACAAGAATCGGA 57.256 50.000 0.00 0.00 41.44 4.55
478 479 3.252974 GTGTCTCCACAAGAATCGGAT 57.747 47.619 0.00 0.00 41.44 4.18
479 480 3.190874 GTGTCTCCACAAGAATCGGATC 58.809 50.000 0.00 0.00 41.44 3.36
480 481 2.168521 TGTCTCCACAAGAATCGGATCC 59.831 50.000 0.00 0.00 35.21 3.36
481 482 1.409064 TCTCCACAAGAATCGGATCCG 59.591 52.381 28.62 28.62 41.35 4.18
482 483 1.137086 CTCCACAAGAATCGGATCCGT 59.863 52.381 32.15 15.85 40.74 4.69
483 484 2.361119 CTCCACAAGAATCGGATCCGTA 59.639 50.000 32.15 19.73 40.74 4.02
484 485 2.100252 TCCACAAGAATCGGATCCGTAC 59.900 50.000 32.15 22.74 40.74 3.67
485 486 2.470821 CACAAGAATCGGATCCGTACC 58.529 52.381 32.15 20.94 40.74 3.34
486 487 2.100916 CACAAGAATCGGATCCGTACCT 59.899 50.000 32.15 22.63 40.74 3.08
487 488 2.764572 ACAAGAATCGGATCCGTACCTT 59.235 45.455 32.15 26.22 40.74 3.50
488 489 3.197116 ACAAGAATCGGATCCGTACCTTT 59.803 43.478 32.15 18.50 40.74 3.11
489 490 3.729862 AGAATCGGATCCGTACCTTTC 57.270 47.619 32.15 24.14 40.74 2.62
490 491 2.034305 AGAATCGGATCCGTACCTTTCG 59.966 50.000 32.15 4.95 40.74 3.46
491 492 0.031721 ATCGGATCCGTACCTTTCGC 59.968 55.000 32.15 0.00 40.74 4.70
492 493 1.590792 CGGATCCGTACCTTTCGCC 60.591 63.158 26.35 0.00 34.35 5.54
493 494 1.590792 GGATCCGTACCTTTCGCCG 60.591 63.158 0.00 0.00 0.00 6.46
494 495 1.434696 GATCCGTACCTTTCGCCGA 59.565 57.895 0.00 0.00 0.00 5.54
495 496 0.179129 GATCCGTACCTTTCGCCGAA 60.179 55.000 0.00 0.00 0.00 4.30
496 497 0.247185 ATCCGTACCTTTCGCCGAAA 59.753 50.000 12.25 12.25 0.00 3.46
497 498 0.667184 TCCGTACCTTTCGCCGAAAC 60.667 55.000 8.43 0.00 0.00 2.78
498 499 0.945265 CCGTACCTTTCGCCGAAACA 60.945 55.000 8.43 0.00 0.00 2.83
499 500 0.860533 CGTACCTTTCGCCGAAACAA 59.139 50.000 8.43 0.00 0.00 2.83
500 501 1.261089 CGTACCTTTCGCCGAAACAAA 59.739 47.619 8.43 0.00 0.00 2.83
501 502 2.286301 CGTACCTTTCGCCGAAACAAAA 60.286 45.455 8.43 0.00 0.00 2.44
502 503 2.943449 ACCTTTCGCCGAAACAAAAA 57.057 40.000 8.43 0.00 0.00 1.94
531 532 7.559590 ACATAGGAAAATATGTGTCTCTTGC 57.440 36.000 0.00 0.00 43.18 4.01
532 533 7.112122 ACATAGGAAAATATGTGTCTCTTGCA 58.888 34.615 0.00 0.00 43.18 4.08
533 534 7.611467 ACATAGGAAAATATGTGTCTCTTGCAA 59.389 33.333 0.00 0.00 43.18 4.08
534 535 6.899393 AGGAAAATATGTGTCTCTTGCAAA 57.101 33.333 0.00 0.00 0.00 3.68
535 536 7.288810 AGGAAAATATGTGTCTCTTGCAAAA 57.711 32.000 0.00 0.00 0.00 2.44
536 537 7.373493 AGGAAAATATGTGTCTCTTGCAAAAG 58.627 34.615 0.00 0.00 0.00 2.27
537 538 6.089954 GGAAAATATGTGTCTCTTGCAAAAGC 59.910 38.462 0.00 0.00 0.00 3.51
538 539 5.710513 AATATGTGTCTCTTGCAAAAGCA 57.289 34.783 0.00 0.00 0.00 3.91
539 540 5.710513 ATATGTGTCTCTTGCAAAAGCAA 57.289 34.783 0.00 2.69 0.00 3.91
540 541 3.865011 TGTGTCTCTTGCAAAAGCAAA 57.135 38.095 0.00 0.00 0.00 3.68
541 542 4.185467 TGTGTCTCTTGCAAAAGCAAAA 57.815 36.364 0.00 0.00 0.00 2.44
542 543 4.564041 TGTGTCTCTTGCAAAAGCAAAAA 58.436 34.783 0.00 0.00 0.00 1.94
581 582 8.702163 TTTTCTCCAAAAGCTAAGAAAAACTG 57.298 30.769 13.78 0.00 41.97 3.16
582 583 6.391227 TCTCCAAAAGCTAAGAAAAACTGG 57.609 37.500 0.00 0.00 0.00 4.00
583 584 5.301805 TCTCCAAAAGCTAAGAAAAACTGGG 59.698 40.000 0.00 0.00 0.00 4.45
584 585 4.058124 CCAAAAGCTAAGAAAAACTGGGC 58.942 43.478 0.00 0.00 0.00 5.36
585 586 4.442753 CCAAAAGCTAAGAAAAACTGGGCA 60.443 41.667 0.00 0.00 32.34 5.36
586 587 5.115480 CAAAAGCTAAGAAAAACTGGGCAA 58.885 37.500 0.00 0.00 32.34 4.52
587 588 5.351948 AAAGCTAAGAAAAACTGGGCAAA 57.648 34.783 0.00 0.00 32.34 3.68
588 589 5.351948 AAGCTAAGAAAAACTGGGCAAAA 57.648 34.783 0.00 0.00 32.34 2.44
589 590 5.351948 AGCTAAGAAAAACTGGGCAAAAA 57.648 34.783 0.00 0.00 32.34 1.94
590 591 5.928976 AGCTAAGAAAAACTGGGCAAAAAT 58.071 33.333 0.00 0.00 32.34 1.82
591 592 5.759763 AGCTAAGAAAAACTGGGCAAAAATG 59.240 36.000 0.00 0.00 32.34 2.32
592 593 5.757808 GCTAAGAAAAACTGGGCAAAAATGA 59.242 36.000 0.00 0.00 0.00 2.57
593 594 6.259829 GCTAAGAAAAACTGGGCAAAAATGAA 59.740 34.615 0.00 0.00 0.00 2.57
594 595 7.201688 GCTAAGAAAAACTGGGCAAAAATGAAA 60.202 33.333 0.00 0.00 0.00 2.69
595 596 7.459795 AAGAAAAACTGGGCAAAAATGAAAA 57.540 28.000 0.00 0.00 0.00 2.29
596 597 7.643569 AGAAAAACTGGGCAAAAATGAAAAT 57.356 28.000 0.00 0.00 0.00 1.82
597 598 7.706159 AGAAAAACTGGGCAAAAATGAAAATC 58.294 30.769 0.00 0.00 0.00 2.17
598 599 6.389830 AAAACTGGGCAAAAATGAAAATCC 57.610 33.333 0.00 0.00 0.00 3.01
599 600 3.663025 ACTGGGCAAAAATGAAAATCCG 58.337 40.909 0.00 0.00 0.00 4.18
600 601 3.323403 ACTGGGCAAAAATGAAAATCCGA 59.677 39.130 0.00 0.00 0.00 4.55
601 602 4.202305 ACTGGGCAAAAATGAAAATCCGAA 60.202 37.500 0.00 0.00 0.00 4.30
602 603 4.708177 TGGGCAAAAATGAAAATCCGAAA 58.292 34.783 0.00 0.00 0.00 3.46
603 604 5.126067 TGGGCAAAAATGAAAATCCGAAAA 58.874 33.333 0.00 0.00 0.00 2.29
604 605 5.590259 TGGGCAAAAATGAAAATCCGAAAAA 59.410 32.000 0.00 0.00 0.00 1.94
627 628 7.595311 AAACCATCTAAAATCCGAAAATTGC 57.405 32.000 0.00 0.00 0.00 3.56
628 629 6.530019 ACCATCTAAAATCCGAAAATTGCT 57.470 33.333 0.00 0.00 0.00 3.91
629 630 7.639113 ACCATCTAAAATCCGAAAATTGCTA 57.361 32.000 0.00 0.00 0.00 3.49
630 631 7.480810 ACCATCTAAAATCCGAAAATTGCTAC 58.519 34.615 0.00 0.00 0.00 3.58
631 632 7.122055 ACCATCTAAAATCCGAAAATTGCTACA 59.878 33.333 0.00 0.00 0.00 2.74
632 633 7.645340 CCATCTAAAATCCGAAAATTGCTACAG 59.355 37.037 0.00 0.00 0.00 2.74
633 634 7.915293 TCTAAAATCCGAAAATTGCTACAGA 57.085 32.000 0.00 0.00 0.00 3.41
634 635 8.330466 TCTAAAATCCGAAAATTGCTACAGAA 57.670 30.769 0.00 0.00 0.00 3.02
635 636 8.788806 TCTAAAATCCGAAAATTGCTACAGAAA 58.211 29.630 0.00 0.00 0.00 2.52
636 637 9.405587 CTAAAATCCGAAAATTGCTACAGAAAA 57.594 29.630 0.00 0.00 0.00 2.29
637 638 8.655651 AAAATCCGAAAATTGCTACAGAAAAA 57.344 26.923 0.00 0.00 0.00 1.94
664 665 2.918712 CGAAGGAGAGCCCAACATAT 57.081 50.000 0.00 0.00 37.41 1.78
665 666 2.487934 CGAAGGAGAGCCCAACATATG 58.512 52.381 0.00 0.00 37.41 1.78
673 674 3.333414 CCAACATATGGCGGCGAG 58.667 61.111 12.98 0.00 43.80 5.03
674 675 2.253758 CCAACATATGGCGGCGAGG 61.254 63.158 12.98 0.00 43.80 4.63
675 676 1.523711 CAACATATGGCGGCGAGGT 60.524 57.895 12.98 0.00 0.00 3.85
676 677 1.523711 AACATATGGCGGCGAGGTG 60.524 57.895 12.98 3.75 0.00 4.00
677 678 1.966901 AACATATGGCGGCGAGGTGA 61.967 55.000 12.98 0.00 0.00 4.02
678 679 1.956170 CATATGGCGGCGAGGTGAC 60.956 63.158 12.98 0.00 0.00 3.67
699 700 0.239347 CGCTCTCAGCCCACAAAAAG 59.761 55.000 0.00 0.00 38.18 2.27
739 740 0.675522 AGCCGGTACCCAATGAAACG 60.676 55.000 6.25 0.00 0.00 3.60
741 742 0.036199 CCGGTACCCAATGAAACGGA 60.036 55.000 6.25 0.00 42.19 4.69
783 784 0.679002 TAAGCAGCCTCGGTCGTAGT 60.679 55.000 0.00 0.00 0.00 2.73
904 906 4.779733 TCCTGGTCGCCCTCCCTC 62.780 72.222 0.00 0.00 0.00 4.30
1013 1016 2.224305 CCCTCGACATGGTAATCCCTTC 60.224 54.545 0.00 0.00 0.00 3.46
1214 1217 6.214412 AGGAGTGATTATTTCTCAGAGGTTGT 59.786 38.462 0.00 0.00 0.00 3.32
1435 1438 6.522054 TCTTGAAAGACGAGGAAAGTGTTAT 58.478 36.000 0.00 0.00 0.00 1.89
1463 1466 2.166459 ACTGTATATCTGTGCACTGCGT 59.834 45.455 19.41 11.82 0.00 5.24
1475 1478 1.396996 GCACTGCGTGGGTAAATGTAG 59.603 52.381 10.02 0.00 33.64 2.74
1507 1510 3.641434 ACATTCTCCTCATGGACCTTG 57.359 47.619 0.80 0.80 37.46 3.61
1508 1511 2.295885 CATTCTCCTCATGGACCTTGC 58.704 52.381 2.42 0.00 37.46 4.01
1526 1540 6.062095 ACCTTGCATAGTGTGTAGAAAAACT 58.938 36.000 0.00 0.00 0.00 2.66
1555 1569 2.846206 TCCTGGGAACACTGATTAGCAT 59.154 45.455 0.00 0.00 35.60 3.79
1592 1606 2.354003 CCAAATGGGCCTAGCTGTTTTG 60.354 50.000 4.53 3.77 0.00 2.44
1600 1614 2.859806 GCCTAGCTGTTTTGCACTGTTG 60.860 50.000 0.00 0.00 34.99 3.33
1601 1615 2.358898 CCTAGCTGTTTTGCACTGTTGT 59.641 45.455 0.00 0.00 34.99 3.32
1602 1616 2.566952 AGCTGTTTTGCACTGTTGTC 57.433 45.000 0.00 0.00 34.99 3.18
1652 1666 7.651304 CAGTACATTCATCAGGTGTATCTTCTC 59.349 40.741 0.00 0.00 31.71 2.87
1669 1683 1.769098 CTCGTTGGAGCATCATGCCG 61.769 60.000 5.84 2.07 46.52 5.69
1696 1710 5.957771 TTTGGCTCATCTATTGTAGTCCT 57.042 39.130 0.00 0.00 0.00 3.85
1752 1766 2.286833 CGGTTGTCATTTTGTCGTCTGT 59.713 45.455 0.00 0.00 0.00 3.41
1822 1877 6.936968 AAGGTAGAAAGGAGTCTGTTACAT 57.063 37.500 0.00 0.00 0.00 2.29
1913 1968 1.820906 CACCACCCTGCATCATCGG 60.821 63.158 0.00 0.00 0.00 4.18
1916 1971 1.221566 CACCCTGCATCATCGGTCA 59.778 57.895 0.00 0.00 0.00 4.02
1919 1974 0.947660 CCCTGCATCATCGGTCATCG 60.948 60.000 0.00 0.00 40.90 3.84
1951 2006 0.524392 GATCTCACACTCGCGTCCAG 60.524 60.000 5.77 0.00 0.00 3.86
1959 2014 1.244697 ACTCGCGTCCAGTGTCATCT 61.245 55.000 5.77 0.00 0.00 2.90
1968 2023 2.064628 AGTGTCATCTGCCACTGCT 58.935 52.632 0.00 0.00 40.30 4.24
1972 2027 1.202794 TGTCATCTGCCACTGCTGAAA 60.203 47.619 0.00 0.00 46.64 2.69
1977 2032 1.005097 TCTGCCACTGCTGAAATGGAT 59.995 47.619 0.00 0.00 41.76 3.41
1980 2035 1.133790 GCCACTGCTGAAATGGATCAC 59.866 52.381 0.00 0.00 35.33 3.06
1989 2044 4.811024 GCTGAAATGGATCACGTCTTATGA 59.189 41.667 0.00 0.00 0.00 2.15
1995 2050 8.455903 AAATGGATCACGTCTTATGAATGAAT 57.544 30.769 0.00 0.00 0.00 2.57
1998 2053 6.929049 TGGATCACGTCTTATGAATGAATACC 59.071 38.462 0.00 0.00 0.00 2.73
2000 2080 7.329717 GGATCACGTCTTATGAATGAATACCTC 59.670 40.741 0.00 0.00 0.00 3.85
2040 2120 7.359514 GCATTTTTCTTGTAATCTTGTCTTGCC 60.360 37.037 0.00 0.00 0.00 4.52
2046 2126 3.263170 TGTAATCTTGTCTTGCCAGGCTA 59.737 43.478 14.15 3.69 0.00 3.93
2048 2128 3.659183 ATCTTGTCTTGCCAGGCTAAT 57.341 42.857 14.15 0.00 0.00 1.73
2050 2130 3.084039 TCTTGTCTTGCCAGGCTAATTG 58.916 45.455 14.15 0.00 0.00 2.32
2065 2146 6.583806 CAGGCTAATTGTCATGTTTGAGTTTC 59.416 38.462 0.00 0.00 30.85 2.78
2068 2149 4.871933 ATTGTCATGTTTGAGTTTCCCC 57.128 40.909 0.00 0.00 30.85 4.81
2076 2157 2.769663 GTTTGAGTTTCCCCCAGGTTTT 59.230 45.455 0.00 0.00 0.00 2.43
2087 2168 2.154462 CCCAGGTTTTACTGCAGAGTG 58.846 52.381 23.35 6.24 37.16 3.51
2094 2175 4.065789 GTTTTACTGCAGAGTGTTAGGCT 58.934 43.478 23.35 0.00 33.21 4.58
2113 2194 9.760077 GTTAGGCTCTACTATAGCATTTAACAA 57.240 33.333 0.00 0.00 41.93 2.83
2127 2208 8.856490 AGCATTTAACAACAAGTTACTCTTTG 57.144 30.769 4.86 4.86 42.19 2.77
2128 2209 7.435192 AGCATTTAACAACAAGTTACTCTTTGC 59.565 33.333 6.00 0.00 42.19 3.68
2138 2298 8.671384 ACAAGTTACTCTTTGCTTGTATTGTA 57.329 30.769 6.95 0.00 46.39 2.41
2153 2313 7.655328 GCTTGTATTGTATCTAAGTGATGCTCT 59.345 37.037 0.00 0.00 38.39 4.09
2156 2316 5.604758 TTGTATCTAAGTGATGCTCTGCT 57.395 39.130 0.00 0.00 38.39 4.24
2158 2318 2.859526 TCTAAGTGATGCTCTGCTCG 57.140 50.000 0.00 0.00 0.00 5.03
2160 2320 2.098280 TCTAAGTGATGCTCTGCTCGAC 59.902 50.000 0.00 0.00 0.00 4.20
2161 2321 0.605083 AAGTGATGCTCTGCTCGACA 59.395 50.000 0.00 0.00 0.00 4.35
2162 2322 0.108898 AGTGATGCTCTGCTCGACAC 60.109 55.000 0.00 0.00 0.00 3.67
2163 2323 1.080995 GTGATGCTCTGCTCGACACC 61.081 60.000 0.00 0.00 0.00 4.16
2164 2324 1.216444 GATGCTCTGCTCGACACCA 59.784 57.895 0.00 0.00 0.00 4.17
2165 2325 0.179089 GATGCTCTGCTCGACACCAT 60.179 55.000 0.00 0.00 0.00 3.55
2204 2364 6.866770 GCCTTTTCTTGGGTAAACATTAGTTC 59.133 38.462 0.00 0.00 36.84 3.01
2207 2367 9.678941 CTTTTCTTGGGTAAACATTAGTTCTTC 57.321 33.333 0.00 0.00 36.84 2.87
2234 2395 7.823149 AATTTCAATTGCTCTTATGTTCTGC 57.177 32.000 0.00 0.00 0.00 4.26
2279 2445 8.964476 ACTACATCCTATCATGGTAGTTTTTG 57.036 34.615 12.04 6.29 0.00 2.44
2282 2448 8.964476 ACATCCTATCATGGTAGTTTTTGTAG 57.036 34.615 12.04 0.00 0.00 2.74
2285 2451 9.614792 ATCCTATCATGGTAGTTTTTGTAGTTC 57.385 33.333 12.04 0.00 0.00 3.01
2477 2645 1.666888 GGTTTTCTGATGCTGTTGGCG 60.667 52.381 0.00 0.00 45.43 5.69
2496 2664 2.693069 CGTTCTTCTCAGGTTCTGCAT 58.307 47.619 0.00 0.00 0.00 3.96
2840 3008 6.263168 CCAGAAACAATGTAGACAAAAGGACT 59.737 38.462 0.00 0.00 0.00 3.85
2930 3098 4.756642 TGCTTCCACATGCTATTATGCTAC 59.243 41.667 0.00 0.00 0.00 3.58
2931 3099 4.143030 GCTTCCACATGCTATTATGCTACG 60.143 45.833 0.00 0.00 0.00 3.51
2932 3100 3.325870 TCCACATGCTATTATGCTACGC 58.674 45.455 0.00 0.00 0.00 4.42
2933 3101 3.066380 CCACATGCTATTATGCTACGCA 58.934 45.455 0.00 0.00 44.86 5.24
2975 3145 5.339008 AAATAAATTCCGGCTCCTTTTCC 57.661 39.130 0.00 0.00 0.00 3.13
2988 3158 0.817634 CTTTTCCGTGGAGTGGTGCA 60.818 55.000 0.00 0.00 0.00 4.57
3006 3176 3.866910 GTGCATGCCATAACCATTTTCTG 59.133 43.478 16.68 0.00 0.00 3.02
3048 3320 7.333423 AGCAACGAATTCAATTAGTAGCACTTA 59.667 33.333 6.22 0.00 0.00 2.24
3102 3450 9.077885 AGAGTTGATAGCAAAGGTTAATTTGAA 57.922 29.630 0.00 0.00 41.71 2.69
3113 3461 8.859156 CAAAGGTTAATTTGAACGTTATGGATG 58.141 33.333 0.00 0.00 41.71 3.51
3142 3490 6.744112 ACTGTTCACTGTTTTCAAGAAACAA 58.256 32.000 5.91 0.00 39.36 2.83
3170 3518 3.374058 CCCGATTTCTATCACCACACAAC 59.626 47.826 0.00 0.00 0.00 3.32
3173 3521 5.382303 CGATTTCTATCACCACACAACAAC 58.618 41.667 0.00 0.00 0.00 3.32
3185 3629 4.420168 CACACAACAACCGTTCAGATTTT 58.580 39.130 0.00 0.00 31.13 1.82
3251 3697 6.977213 TGAGCAAAATAACCTCAAGTTAACC 58.023 36.000 0.88 0.00 44.04 2.85
3257 3703 3.982576 AACCTCAAGTTAACCTTTGCG 57.017 42.857 0.88 0.00 36.74 4.85
3279 3725 4.453478 CGCTTGTGCCATGATAATACAGAT 59.547 41.667 0.00 0.00 35.36 2.90
3282 3728 7.307930 CGCTTGTGCCATGATAATACAGATTTA 60.308 37.037 0.00 0.00 35.36 1.40
3283 3729 8.352201 GCTTGTGCCATGATAATACAGATTTAA 58.648 33.333 0.00 0.00 0.00 1.52
3286 3732 9.625747 TGTGCCATGATAATACAGATTTAAAGA 57.374 29.630 0.00 0.00 0.00 2.52
3287 3733 9.884465 GTGCCATGATAATACAGATTTAAAGAC 57.116 33.333 0.00 0.00 0.00 3.01
3288 3734 9.851686 TGCCATGATAATACAGATTTAAAGACT 57.148 29.630 0.00 0.00 0.00 3.24
3299 3745 7.283329 ACAGATTTAAAGACTTTCTGGTCTGT 58.717 34.615 20.77 20.77 44.67 3.41
3308 3754 5.540337 AGACTTTCTGGTCTGTCAGATTGTA 59.460 40.000 5.68 0.00 43.89 2.41
3340 3786 2.224042 TGAGTTGCGGACCTGCATATAG 60.224 50.000 11.00 0.00 45.78 1.31
3356 3816 7.485913 CCTGCATATAGTTGATTGTTCACAAAC 59.514 37.037 0.00 0.00 39.55 2.93
3381 3842 1.879380 TGCAGGATTGTTCTGGAAACG 59.121 47.619 0.00 0.00 33.16 3.60
3519 3980 5.280499 TCCAGATGACTTATTCTTCTCCCA 58.720 41.667 0.00 0.00 36.76 4.37
3715 4180 0.110238 TGACTTGAATCTTTGCGCGC 60.110 50.000 27.26 27.26 0.00 6.86
3884 4431 4.339247 CACCTCCCTTTTGGTGCATAATAG 59.661 45.833 0.00 0.00 45.68 1.73
3900 4447 2.133281 ATAGCAATCCAGCAACAGCA 57.867 45.000 0.00 0.00 36.85 4.41
3930 4477 3.837213 ACCAATTTCTTGTGATCTGCG 57.163 42.857 0.00 0.00 0.00 5.18
3992 4540 9.565090 CCATGATCATTTGAGTTTTCCTCTATA 57.435 33.333 5.16 0.00 41.11 1.31
3998 4546 9.784531 TCATTTGAGTTTTCCTCTATATCATCC 57.215 33.333 0.00 0.00 41.11 3.51
3999 4547 9.790344 CATTTGAGTTTTCCTCTATATCATCCT 57.210 33.333 0.00 0.00 41.11 3.24
4000 4548 9.790344 ATTTGAGTTTTCCTCTATATCATCCTG 57.210 33.333 0.00 0.00 41.11 3.86
4001 4549 7.921041 TGAGTTTTCCTCTATATCATCCTGT 57.079 36.000 0.00 0.00 41.11 4.00
4002 4550 7.730084 TGAGTTTTCCTCTATATCATCCTGTG 58.270 38.462 0.00 0.00 41.11 3.66
4003 4551 6.529220 AGTTTTCCTCTATATCATCCTGTGC 58.471 40.000 0.00 0.00 0.00 4.57
4004 4552 6.100279 AGTTTTCCTCTATATCATCCTGTGCA 59.900 38.462 0.00 0.00 0.00 4.57
4005 4553 5.474578 TTCCTCTATATCATCCTGTGCAC 57.525 43.478 10.75 10.75 0.00 4.57
4006 4554 3.834813 TCCTCTATATCATCCTGTGCACC 59.165 47.826 15.69 0.00 0.00 5.01
4007 4555 3.837146 CCTCTATATCATCCTGTGCACCT 59.163 47.826 15.69 0.00 0.00 4.00
4008 4556 4.285517 CCTCTATATCATCCTGTGCACCTT 59.714 45.833 15.69 0.00 0.00 3.50
4009 4557 5.474578 TCTATATCATCCTGTGCACCTTC 57.525 43.478 15.69 0.00 0.00 3.46
4010 4558 5.150715 TCTATATCATCCTGTGCACCTTCT 58.849 41.667 15.69 0.00 0.00 2.85
4011 4559 6.314917 TCTATATCATCCTGTGCACCTTCTA 58.685 40.000 15.69 0.00 0.00 2.10
4012 4560 3.550437 ATCATCCTGTGCACCTTCTAC 57.450 47.619 15.69 0.00 0.00 2.59
4013 4561 1.555075 TCATCCTGTGCACCTTCTACC 59.445 52.381 15.69 0.00 0.00 3.18
4014 4562 1.278985 CATCCTGTGCACCTTCTACCA 59.721 52.381 15.69 0.00 0.00 3.25
4015 4563 1.656587 TCCTGTGCACCTTCTACCAT 58.343 50.000 15.69 0.00 0.00 3.55
4016 4564 1.555075 TCCTGTGCACCTTCTACCATC 59.445 52.381 15.69 0.00 0.00 3.51
4064 4612 3.843240 CTTGTTCGCGCGGCTCTC 61.843 66.667 31.69 15.63 0.00 3.20
4139 4687 4.103365 TCAACAAATTGACAAACGCTGT 57.897 36.364 0.00 0.00 40.01 4.40
4217 4765 2.280797 GACCTTGTGTGCGCTCCA 60.281 61.111 9.73 1.92 0.00 3.86
4246 4794 0.761323 GGGGGTCTAGGCTTCTCCTC 60.761 65.000 0.00 0.00 43.20 3.71
4279 4827 5.636965 ACATGAATGTCTGTCTTCTTCTTCG 59.363 40.000 0.00 0.00 35.87 3.79
4521 5069 5.451798 CCAAACAACCAAACTACTCTTGCAT 60.452 40.000 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.659610 GCTTCCGTGAGAGGCACT 59.340 61.111 0.00 0.00 46.54 4.40
9 10 0.955919 GGGTTTGCTTCCGTGAGAGG 60.956 60.000 0.00 0.00 0.00 3.69
10 11 1.291877 CGGGTTTGCTTCCGTGAGAG 61.292 60.000 0.00 0.00 41.23 3.20
11 12 1.301401 CGGGTTTGCTTCCGTGAGA 60.301 57.895 0.00 0.00 41.23 3.27
12 13 3.253955 CGGGTTTGCTTCCGTGAG 58.746 61.111 0.00 0.00 41.23 3.51
17 18 2.142357 GAAGGCACGGGTTTGCTTCC 62.142 60.000 0.00 0.00 42.56 3.46
18 19 1.285950 GAAGGCACGGGTTTGCTTC 59.714 57.895 0.00 0.00 42.56 3.86
19 20 0.827507 ATGAAGGCACGGGTTTGCTT 60.828 50.000 0.00 0.00 42.56 3.91
20 21 1.228552 ATGAAGGCACGGGTTTGCT 60.229 52.632 0.00 0.00 42.56 3.91
21 22 1.080569 CATGAAGGCACGGGTTTGC 60.081 57.895 0.00 0.00 42.18 3.68
22 23 0.523072 CTCATGAAGGCACGGGTTTG 59.477 55.000 0.00 0.00 0.00 2.93
23 24 0.400213 TCTCATGAAGGCACGGGTTT 59.600 50.000 0.00 0.00 0.00 3.27
24 25 0.400213 TTCTCATGAAGGCACGGGTT 59.600 50.000 0.00 0.00 0.00 4.11
25 26 0.036010 CTTCTCATGAAGGCACGGGT 60.036 55.000 0.00 0.00 44.33 5.28
26 27 2.772739 CTTCTCATGAAGGCACGGG 58.227 57.895 0.00 0.00 44.33 5.28
34 35 9.113838 GAGAGGTATAAATTTGCTTCTCATGAA 57.886 33.333 17.80 0.00 35.19 2.57
35 36 8.267183 TGAGAGGTATAAATTTGCTTCTCATGA 58.733 33.333 19.76 0.00 38.54 3.07
36 37 8.341173 GTGAGAGGTATAAATTTGCTTCTCATG 58.659 37.037 23.16 0.00 42.86 3.07
37 38 7.225538 CGTGAGAGGTATAAATTTGCTTCTCAT 59.774 37.037 23.16 5.43 42.86 2.90
38 39 6.535150 CGTGAGAGGTATAAATTTGCTTCTCA 59.465 38.462 19.76 19.76 40.24 3.27
39 40 6.018669 CCGTGAGAGGTATAAATTTGCTTCTC 60.019 42.308 16.76 16.76 35.50 2.87
40 41 5.817816 CCGTGAGAGGTATAAATTTGCTTCT 59.182 40.000 0.00 2.65 0.00 2.85
41 42 5.815740 TCCGTGAGAGGTATAAATTTGCTTC 59.184 40.000 0.00 0.00 0.00 3.86
42 43 5.741011 TCCGTGAGAGGTATAAATTTGCTT 58.259 37.500 0.00 0.00 0.00 3.91
43 44 5.353394 TCCGTGAGAGGTATAAATTTGCT 57.647 39.130 0.00 0.00 0.00 3.91
44 45 5.504173 GCTTCCGTGAGAGGTATAAATTTGC 60.504 44.000 0.00 0.00 0.00 3.68
45 46 5.584649 TGCTTCCGTGAGAGGTATAAATTTG 59.415 40.000 0.00 0.00 0.00 2.32
46 47 5.741011 TGCTTCCGTGAGAGGTATAAATTT 58.259 37.500 0.00 0.00 0.00 1.82
47 48 5.353394 TGCTTCCGTGAGAGGTATAAATT 57.647 39.130 0.00 0.00 0.00 1.82
48 49 5.353394 TTGCTTCCGTGAGAGGTATAAAT 57.647 39.130 0.00 0.00 0.00 1.40
49 50 4.811969 TTGCTTCCGTGAGAGGTATAAA 57.188 40.909 0.00 0.00 0.00 1.40
50 51 5.353394 AATTGCTTCCGTGAGAGGTATAA 57.647 39.130 0.00 0.00 0.00 0.98
51 52 5.353394 AAATTGCTTCCGTGAGAGGTATA 57.647 39.130 0.00 0.00 0.00 1.47
52 53 3.914426 AATTGCTTCCGTGAGAGGTAT 57.086 42.857 0.00 0.00 0.00 2.73
53 54 3.695830 AAATTGCTTCCGTGAGAGGTA 57.304 42.857 0.00 0.00 0.00 3.08
54 55 2.568623 AAATTGCTTCCGTGAGAGGT 57.431 45.000 0.00 0.00 0.00 3.85
55 56 3.923017 AAAAATTGCTTCCGTGAGAGG 57.077 42.857 0.00 0.00 0.00 3.69
74 75 2.357637 CGGTTGTGCCTCTTGAGAAAAA 59.642 45.455 0.00 0.00 34.25 1.94
75 76 1.946768 CGGTTGTGCCTCTTGAGAAAA 59.053 47.619 0.00 0.00 34.25 2.29
76 77 1.134220 ACGGTTGTGCCTCTTGAGAAA 60.134 47.619 0.00 0.00 34.25 2.52
77 78 0.468226 ACGGTTGTGCCTCTTGAGAA 59.532 50.000 0.00 0.00 34.25 2.87
78 79 0.249868 CACGGTTGTGCCTCTTGAGA 60.250 55.000 0.00 0.00 39.67 3.27
79 80 2.238353 CACGGTTGTGCCTCTTGAG 58.762 57.895 0.00 0.00 39.67 3.02
80 81 4.454948 CACGGTTGTGCCTCTTGA 57.545 55.556 0.00 0.00 39.67 3.02
89 90 2.651361 CGAGAGAGGCACGGTTGT 59.349 61.111 0.00 0.00 0.00 3.32
90 91 2.125912 CCGAGAGAGGCACGGTTG 60.126 66.667 0.00 0.00 44.40 3.77
94 95 2.202676 GCTTCCGAGAGAGGCACG 60.203 66.667 0.00 0.00 46.54 5.34
98 99 2.093764 ACAGATTTGCTTCCGAGAGAGG 60.094 50.000 0.00 0.00 0.00 3.69
99 100 2.928757 CACAGATTTGCTTCCGAGAGAG 59.071 50.000 0.00 0.00 0.00 3.20
100 101 2.932622 GCACAGATTTGCTTCCGAGAGA 60.933 50.000 0.00 0.00 39.59 3.10
101 102 1.396301 GCACAGATTTGCTTCCGAGAG 59.604 52.381 0.00 0.00 39.59 3.20
102 103 1.270785 TGCACAGATTTGCTTCCGAGA 60.271 47.619 0.00 0.00 43.41 4.04
103 104 1.159285 TGCACAGATTTGCTTCCGAG 58.841 50.000 0.00 0.00 43.41 4.63
104 105 1.739466 GATGCACAGATTTGCTTCCGA 59.261 47.619 0.00 0.00 43.41 4.55
105 106 2.184385 GATGCACAGATTTGCTTCCG 57.816 50.000 0.00 0.00 43.41 4.30
107 108 3.129813 TCATGGATGCACAGATTTGCTTC 59.870 43.478 0.00 3.12 43.41 3.86
108 109 3.093814 TCATGGATGCACAGATTTGCTT 58.906 40.909 0.00 0.00 43.41 3.91
109 110 2.688446 CTCATGGATGCACAGATTTGCT 59.312 45.455 0.00 0.00 43.41 3.91
110 111 2.686405 TCTCATGGATGCACAGATTTGC 59.314 45.455 0.00 0.00 43.31 3.68
111 112 4.733815 GCTTCTCATGGATGCACAGATTTG 60.734 45.833 13.55 0.00 42.46 2.32
112 113 3.380637 GCTTCTCATGGATGCACAGATTT 59.619 43.478 13.55 0.00 42.46 2.17
113 114 2.950309 GCTTCTCATGGATGCACAGATT 59.050 45.455 13.55 0.00 42.46 2.40
114 115 2.092592 TGCTTCTCATGGATGCACAGAT 60.093 45.455 15.82 0.00 45.85 2.90
115 116 1.279846 TGCTTCTCATGGATGCACAGA 59.720 47.619 15.82 0.00 45.85 3.41
116 117 1.746470 TGCTTCTCATGGATGCACAG 58.254 50.000 15.82 0.00 45.85 3.66
117 118 3.961582 TGCTTCTCATGGATGCACA 57.038 47.368 15.82 0.00 45.85 4.57
120 121 3.795826 GCAGATTTGCTTCTCATGGATGC 60.796 47.826 0.00 12.27 46.95 3.91
121 122 3.966154 GCAGATTTGCTTCTCATGGATG 58.034 45.455 0.00 0.00 46.95 3.51
134 135 0.583438 CGGCGATAGGTGCAGATTTG 59.417 55.000 0.00 0.00 0.00 2.32
135 136 0.464036 TCGGCGATAGGTGCAGATTT 59.536 50.000 4.99 0.00 31.60 2.17
136 137 0.464036 TTCGGCGATAGGTGCAGATT 59.536 50.000 11.76 0.00 36.46 2.40
137 138 0.249489 GTTCGGCGATAGGTGCAGAT 60.249 55.000 11.76 0.00 36.46 2.90
138 139 1.141019 GTTCGGCGATAGGTGCAGA 59.859 57.895 11.76 0.00 34.75 4.26
139 140 1.883084 GGTTCGGCGATAGGTGCAG 60.883 63.158 11.76 0.00 0.00 4.41
140 141 2.185867 GGTTCGGCGATAGGTGCA 59.814 61.111 11.76 0.00 0.00 4.57
420 421 4.868268 AGTGGTACAGTTATGCCTCTAGA 58.132 43.478 0.00 0.00 40.27 2.43
421 422 4.645136 TGAGTGGTACAGTTATGCCTCTAG 59.355 45.833 0.00 0.00 45.14 2.43
422 423 4.401519 GTGAGTGGTACAGTTATGCCTCTA 59.598 45.833 0.00 0.00 45.14 2.43
423 424 3.195825 GTGAGTGGTACAGTTATGCCTCT 59.804 47.826 0.00 0.00 45.14 3.69
424 425 3.522553 GTGAGTGGTACAGTTATGCCTC 58.477 50.000 0.00 0.00 45.14 4.70
425 426 2.094182 CGTGAGTGGTACAGTTATGCCT 60.094 50.000 0.00 0.00 45.14 4.75
426 427 2.268298 CGTGAGTGGTACAGTTATGCC 58.732 52.381 0.00 0.00 45.14 4.40
427 428 2.094390 TCCGTGAGTGGTACAGTTATGC 60.094 50.000 0.00 0.00 45.14 3.14
428 429 3.861276 TCCGTGAGTGGTACAGTTATG 57.139 47.619 0.00 0.00 45.14 1.90
429 430 3.368116 GCTTCCGTGAGTGGTACAGTTAT 60.368 47.826 0.00 0.00 45.14 1.89
430 431 2.029649 GCTTCCGTGAGTGGTACAGTTA 60.030 50.000 0.00 0.00 45.14 2.24
431 432 1.270147 GCTTCCGTGAGTGGTACAGTT 60.270 52.381 0.00 0.00 45.14 3.16
433 434 0.317160 TGCTTCCGTGAGTGGTACAG 59.683 55.000 0.00 0.00 41.80 2.74
434 435 0.753867 TTGCTTCCGTGAGTGGTACA 59.246 50.000 0.00 0.00 0.00 2.90
435 436 1.873698 TTTGCTTCCGTGAGTGGTAC 58.126 50.000 0.00 0.00 0.00 3.34
436 437 2.851263 ATTTGCTTCCGTGAGTGGTA 57.149 45.000 0.00 0.00 0.00 3.25
437 438 1.981256 AATTTGCTTCCGTGAGTGGT 58.019 45.000 0.00 0.00 0.00 4.16
438 439 2.034558 ACAAATTTGCTTCCGTGAGTGG 59.965 45.455 18.12 0.00 0.00 4.00
439 440 3.044986 CACAAATTTGCTTCCGTGAGTG 58.955 45.455 18.12 1.20 0.00 3.51
440 441 2.687935 ACACAAATTTGCTTCCGTGAGT 59.312 40.909 18.12 1.01 0.00 3.41
441 442 3.003689 AGACACAAATTTGCTTCCGTGAG 59.996 43.478 18.12 0.45 0.00 3.51
442 443 2.948979 AGACACAAATTTGCTTCCGTGA 59.051 40.909 18.12 0.00 0.00 4.35
443 444 3.300009 GAGACACAAATTTGCTTCCGTG 58.700 45.455 18.12 9.98 0.00 4.94
444 445 2.293399 GGAGACACAAATTTGCTTCCGT 59.707 45.455 18.12 7.65 0.00 4.69
445 446 2.293122 TGGAGACACAAATTTGCTTCCG 59.707 45.455 18.12 4.61 33.40 4.30
459 460 2.168521 GGATCCGATTCTTGTGGAGACA 59.831 50.000 0.00 0.00 34.75 3.41
460 461 2.799917 CGGATCCGATTCTTGTGGAGAC 60.800 54.545 30.62 0.00 42.83 3.36
461 462 1.409064 CGGATCCGATTCTTGTGGAGA 59.591 52.381 30.62 0.00 42.83 3.71
462 463 1.137086 ACGGATCCGATTCTTGTGGAG 59.863 52.381 39.55 7.03 42.83 3.86
463 464 1.191535 ACGGATCCGATTCTTGTGGA 58.808 50.000 39.55 0.00 42.83 4.02
464 465 2.470821 GTACGGATCCGATTCTTGTGG 58.529 52.381 39.55 7.81 42.83 4.17
465 466 2.100916 AGGTACGGATCCGATTCTTGTG 59.899 50.000 39.55 8.61 42.83 3.33
466 467 2.385803 AGGTACGGATCCGATTCTTGT 58.614 47.619 39.55 18.32 42.83 3.16
467 468 3.454371 AAGGTACGGATCCGATTCTTG 57.546 47.619 39.55 10.20 42.83 3.02
468 469 3.490419 CGAAAGGTACGGATCCGATTCTT 60.490 47.826 39.55 29.94 42.83 2.52
469 470 2.034305 CGAAAGGTACGGATCCGATTCT 59.966 50.000 39.55 26.65 42.83 2.40
470 471 2.391879 CGAAAGGTACGGATCCGATTC 58.608 52.381 39.55 27.60 42.83 2.52
471 472 1.537562 GCGAAAGGTACGGATCCGATT 60.538 52.381 39.55 23.36 42.83 3.34
472 473 0.031721 GCGAAAGGTACGGATCCGAT 59.968 55.000 39.55 24.77 42.83 4.18
473 474 1.434696 GCGAAAGGTACGGATCCGA 59.565 57.895 39.55 20.53 42.83 4.55
474 475 1.590792 GGCGAAAGGTACGGATCCG 60.591 63.158 32.20 32.20 46.03 4.18
475 476 1.590792 CGGCGAAAGGTACGGATCC 60.591 63.158 0.00 0.00 0.00 3.36
476 477 0.179129 TTCGGCGAAAGGTACGGATC 60.179 55.000 21.53 0.00 0.00 3.36
477 478 0.247185 TTTCGGCGAAAGGTACGGAT 59.753 50.000 29.31 0.00 0.00 4.18
478 479 0.667184 GTTTCGGCGAAAGGTACGGA 60.667 55.000 32.93 8.84 31.87 4.69
479 480 0.945265 TGTTTCGGCGAAAGGTACGG 60.945 55.000 32.93 0.00 31.87 4.02
480 481 0.860533 TTGTTTCGGCGAAAGGTACG 59.139 50.000 32.93 0.00 31.87 3.67
481 482 3.337301 TTTTGTTTCGGCGAAAGGTAC 57.663 42.857 32.93 22.72 31.87 3.34
483 484 2.943449 TTTTTGTTTCGGCGAAAGGT 57.057 40.000 32.93 0.00 31.87 3.50
507 508 7.112122 TGCAAGAGACACATATTTTCCTATGT 58.888 34.615 0.00 0.00 41.82 2.29
508 509 7.558161 TGCAAGAGACACATATTTTCCTATG 57.442 36.000 0.00 0.00 35.61 2.23
509 510 8.579850 TTTGCAAGAGACACATATTTTCCTAT 57.420 30.769 0.00 0.00 0.00 2.57
510 511 7.994425 TTTGCAAGAGACACATATTTTCCTA 57.006 32.000 0.00 0.00 0.00 2.94
511 512 6.899393 TTTGCAAGAGACACATATTTTCCT 57.101 33.333 0.00 0.00 0.00 3.36
512 513 6.089954 GCTTTTGCAAGAGACACATATTTTCC 59.910 38.462 20.43 0.00 46.58 3.13
513 514 7.042320 GCTTTTGCAAGAGACACATATTTTC 57.958 36.000 20.43 0.00 46.58 2.29
555 556 9.150348 CAGTTTTTCTTAGCTTTTGGAGAAAAA 57.850 29.630 19.22 19.22 46.99 1.94
556 557 7.763985 CCAGTTTTTCTTAGCTTTTGGAGAAAA 59.236 33.333 13.11 13.11 42.86 2.29
557 558 7.264947 CCAGTTTTTCTTAGCTTTTGGAGAAA 58.735 34.615 0.00 0.00 36.61 2.52
558 559 6.183360 CCCAGTTTTTCTTAGCTTTTGGAGAA 60.183 38.462 0.00 0.00 0.00 2.87
559 560 5.301805 CCCAGTTTTTCTTAGCTTTTGGAGA 59.698 40.000 0.00 0.00 0.00 3.71
560 561 5.532557 CCCAGTTTTTCTTAGCTTTTGGAG 58.467 41.667 0.00 0.00 0.00 3.86
561 562 4.202212 GCCCAGTTTTTCTTAGCTTTTGGA 60.202 41.667 0.00 0.00 0.00 3.53
562 563 4.058124 GCCCAGTTTTTCTTAGCTTTTGG 58.942 43.478 0.00 0.00 0.00 3.28
563 564 4.692228 TGCCCAGTTTTTCTTAGCTTTTG 58.308 39.130 0.00 0.00 0.00 2.44
564 565 5.351948 TTGCCCAGTTTTTCTTAGCTTTT 57.648 34.783 0.00 0.00 0.00 2.27
565 566 5.351948 TTTGCCCAGTTTTTCTTAGCTTT 57.648 34.783 0.00 0.00 0.00 3.51
566 567 5.351948 TTTTGCCCAGTTTTTCTTAGCTT 57.648 34.783 0.00 0.00 0.00 3.74
567 568 5.351948 TTTTTGCCCAGTTTTTCTTAGCT 57.648 34.783 0.00 0.00 0.00 3.32
568 569 5.757808 TCATTTTTGCCCAGTTTTTCTTAGC 59.242 36.000 0.00 0.00 0.00 3.09
569 570 7.784633 TTCATTTTTGCCCAGTTTTTCTTAG 57.215 32.000 0.00 0.00 0.00 2.18
570 571 8.567285 TTTTCATTTTTGCCCAGTTTTTCTTA 57.433 26.923 0.00 0.00 0.00 2.10
571 572 7.459795 TTTTCATTTTTGCCCAGTTTTTCTT 57.540 28.000 0.00 0.00 0.00 2.52
572 573 7.201812 GGATTTTCATTTTTGCCCAGTTTTTCT 60.202 33.333 0.00 0.00 0.00 2.52
573 574 6.917477 GGATTTTCATTTTTGCCCAGTTTTTC 59.083 34.615 0.00 0.00 0.00 2.29
574 575 6.459435 CGGATTTTCATTTTTGCCCAGTTTTT 60.459 34.615 0.00 0.00 0.00 1.94
575 576 5.008514 CGGATTTTCATTTTTGCCCAGTTTT 59.991 36.000 0.00 0.00 0.00 2.43
576 577 4.514816 CGGATTTTCATTTTTGCCCAGTTT 59.485 37.500 0.00 0.00 0.00 2.66
577 578 4.064388 CGGATTTTCATTTTTGCCCAGTT 58.936 39.130 0.00 0.00 0.00 3.16
578 579 3.323403 TCGGATTTTCATTTTTGCCCAGT 59.677 39.130 0.00 0.00 0.00 4.00
579 580 3.924144 TCGGATTTTCATTTTTGCCCAG 58.076 40.909 0.00 0.00 0.00 4.45
580 581 4.342862 TTCGGATTTTCATTTTTGCCCA 57.657 36.364 0.00 0.00 0.00 5.36
581 582 5.681337 TTTTCGGATTTTCATTTTTGCCC 57.319 34.783 0.00 0.00 0.00 5.36
601 602 8.503196 GCAATTTTCGGATTTTAGATGGTTTTT 58.497 29.630 0.00 0.00 0.00 1.94
602 603 7.877612 AGCAATTTTCGGATTTTAGATGGTTTT 59.122 29.630 0.00 0.00 0.00 2.43
603 604 7.386059 AGCAATTTTCGGATTTTAGATGGTTT 58.614 30.769 0.00 0.00 0.00 3.27
604 605 6.935167 AGCAATTTTCGGATTTTAGATGGTT 58.065 32.000 0.00 0.00 0.00 3.67
605 606 6.530019 AGCAATTTTCGGATTTTAGATGGT 57.470 33.333 0.00 0.00 0.00 3.55
606 607 7.479980 TGTAGCAATTTTCGGATTTTAGATGG 58.520 34.615 0.00 0.00 0.00 3.51
607 608 8.397906 TCTGTAGCAATTTTCGGATTTTAGATG 58.602 33.333 0.00 0.00 0.00 2.90
608 609 8.506168 TCTGTAGCAATTTTCGGATTTTAGAT 57.494 30.769 0.00 0.00 0.00 1.98
609 610 7.915293 TCTGTAGCAATTTTCGGATTTTAGA 57.085 32.000 0.00 0.00 0.00 2.10
610 611 8.964420 TTTCTGTAGCAATTTTCGGATTTTAG 57.036 30.769 0.00 0.00 0.00 1.85
611 612 9.751542 TTTTTCTGTAGCAATTTTCGGATTTTA 57.248 25.926 0.00 0.00 0.00 1.52
612 613 8.655651 TTTTTCTGTAGCAATTTTCGGATTTT 57.344 26.923 0.00 0.00 0.00 1.82
637 638 1.341089 GGGCTCTCCTTCGGGATTTTT 60.341 52.381 0.00 0.00 44.11 1.94
638 639 0.256177 GGGCTCTCCTTCGGGATTTT 59.744 55.000 0.00 0.00 44.11 1.82
639 640 0.914417 TGGGCTCTCCTTCGGGATTT 60.914 55.000 0.00 0.00 44.11 2.17
640 641 0.914417 TTGGGCTCTCCTTCGGGATT 60.914 55.000 0.00 0.00 44.11 3.01
641 642 1.306997 TTGGGCTCTCCTTCGGGAT 60.307 57.895 0.00 0.00 44.11 3.85
642 643 2.121832 TTGGGCTCTCCTTCGGGA 59.878 61.111 0.00 0.00 42.74 5.14
643 644 1.915078 ATGTTGGGCTCTCCTTCGGG 61.915 60.000 0.00 0.00 36.20 5.14
644 645 0.830648 TATGTTGGGCTCTCCTTCGG 59.169 55.000 0.00 0.00 36.20 4.30
645 646 2.487934 CATATGTTGGGCTCTCCTTCG 58.512 52.381 0.00 0.00 36.20 3.79
646 647 2.856222 CCATATGTTGGGCTCTCCTTC 58.144 52.381 1.24 0.00 42.33 3.46
647 648 1.133668 GCCATATGTTGGGCTCTCCTT 60.134 52.381 1.24 0.00 46.55 3.36
648 649 0.475906 GCCATATGTTGGGCTCTCCT 59.524 55.000 1.24 0.00 46.55 3.69
649 650 3.027419 GCCATATGTTGGGCTCTCC 57.973 57.895 1.24 0.00 46.55 3.71
654 655 3.964875 CGCCGCCATATGTTGGGC 61.965 66.667 15.32 15.32 46.55 5.36
655 656 2.203139 TCGCCGCCATATGTTGGG 60.203 61.111 11.29 6.19 46.55 4.12
657 658 1.523711 ACCTCGCCGCCATATGTTG 60.524 57.895 1.24 0.00 0.00 3.33
658 659 1.523711 CACCTCGCCGCCATATGTT 60.524 57.895 1.24 0.00 0.00 2.71
659 660 2.108976 CACCTCGCCGCCATATGT 59.891 61.111 1.24 0.00 0.00 2.29
660 661 1.956170 GTCACCTCGCCGCCATATG 60.956 63.158 0.00 0.00 0.00 1.78
661 662 2.421739 GTCACCTCGCCGCCATAT 59.578 61.111 0.00 0.00 0.00 1.78
662 663 4.201679 CGTCACCTCGCCGCCATA 62.202 66.667 0.00 0.00 0.00 2.74
670 671 4.103103 TGAGAGCGCGTCACCTCG 62.103 66.667 8.43 0.00 33.39 4.63
671 672 2.202544 CTGAGAGCGCGTCACCTC 60.203 66.667 8.43 5.57 0.00 3.85
672 673 4.427661 GCTGAGAGCGCGTCACCT 62.428 66.667 8.43 0.00 0.00 4.00
681 682 1.609208 TCTTTTTGTGGGCTGAGAGC 58.391 50.000 0.00 0.00 41.46 4.09
739 740 0.395724 CTACCCTGGGCAATGGTTCC 60.396 60.000 14.08 0.00 33.55 3.62
741 742 1.000359 GCTACCCTGGGCAATGGTT 60.000 57.895 14.08 0.00 33.55 3.67
848 850 1.351683 ACGAGGACAGAGTGGAGTAGT 59.648 52.381 0.00 0.00 0.00 2.73
1031 1034 3.799755 GCGCGGTCGGATTTTGCT 61.800 61.111 8.83 0.00 35.95 3.91
1162 1165 2.159476 GCGAAATTCGGGGAGTAAAACC 60.159 50.000 17.49 0.00 40.84 3.27
1165 1168 1.279846 AGGCGAAATTCGGGGAGTAAA 59.720 47.619 17.49 0.00 40.84 2.01
1214 1217 2.732289 GGCAGAGACCAAAGCCAAA 58.268 52.632 0.00 0.00 46.26 3.28
1342 1345 0.033504 AGCGACTTCTCGAAAGCCAA 59.966 50.000 7.10 0.00 43.06 4.52
1441 1444 2.537214 CGCAGTGCACAGATATACAGTG 59.463 50.000 21.04 5.30 38.70 3.66
1442 1445 2.166459 ACGCAGTGCACAGATATACAGT 59.834 45.455 21.04 2.77 42.51 3.55
1443 1446 2.814269 ACGCAGTGCACAGATATACAG 58.186 47.619 21.04 2.14 42.51 2.74
1444 1447 2.959507 ACGCAGTGCACAGATATACA 57.040 45.000 21.04 0.00 42.51 2.29
1463 1466 6.909550 AAACTTGCATTCTACATTTACCCA 57.090 33.333 0.00 0.00 0.00 4.51
1507 1510 4.215399 TGGCAGTTTTTCTACACACTATGC 59.785 41.667 0.00 0.00 0.00 3.14
1508 1511 5.940192 TGGCAGTTTTTCTACACACTATG 57.060 39.130 0.00 0.00 0.00 2.23
1526 1540 0.038166 GTGTTCCCAGGAAGATGGCA 59.962 55.000 0.00 0.00 39.17 4.92
1555 1569 0.836606 TTGGTTGGCAGACAGTGAGA 59.163 50.000 0.00 0.00 0.00 3.27
1592 1606 2.153913 CTGTAGCCGACAACAGTGC 58.846 57.895 0.00 0.00 37.70 4.40
1600 1614 1.270147 ACCTCACAAACTGTAGCCGAC 60.270 52.381 0.00 0.00 0.00 4.79
1601 1615 1.000506 GACCTCACAAACTGTAGCCGA 59.999 52.381 0.00 0.00 0.00 5.54
1602 1616 1.429463 GACCTCACAAACTGTAGCCG 58.571 55.000 0.00 0.00 0.00 5.52
1652 1666 1.647545 AACGGCATGATGCTCCAACG 61.648 55.000 17.84 13.80 44.28 4.10
1686 1700 3.005791 GCAAGGCAACAAAGGACTACAAT 59.994 43.478 0.00 0.00 41.41 2.71
1689 1703 2.030805 CAGCAAGGCAACAAAGGACTAC 60.031 50.000 0.00 0.00 41.41 2.73
1690 1704 2.229792 CAGCAAGGCAACAAAGGACTA 58.770 47.619 0.00 0.00 41.41 2.59
1696 1710 3.325293 TCAAAACAGCAAGGCAACAAA 57.675 38.095 0.00 0.00 41.41 2.83
1725 1739 4.753107 ACGACAAAATGACAACCGATTAGT 59.247 37.500 0.00 0.00 0.00 2.24
1730 1744 2.542178 CAGACGACAAAATGACAACCGA 59.458 45.455 0.00 0.00 0.00 4.69
1792 1812 6.041296 ACAGACTCCTTTCTACCTTAACGAAA 59.959 38.462 0.00 0.00 0.00 3.46
1822 1877 4.457466 GGTGTTTTCTTCCCAGTTCTGTA 58.543 43.478 0.00 0.00 0.00 2.74
1830 1885 1.074889 GGCTAGGGTGTTTTCTTCCCA 59.925 52.381 0.00 0.00 43.31 4.37
1959 2014 1.272037 TGATCCATTTCAGCAGTGGCA 60.272 47.619 0.00 0.00 44.61 4.92
1968 2023 7.047271 TCATTCATAAGACGTGATCCATTTCA 58.953 34.615 0.00 0.00 0.00 2.69
1970 2025 7.864108 TTCATTCATAAGACGTGATCCATTT 57.136 32.000 0.00 0.00 0.00 2.32
1972 2027 7.604164 GGTATTCATTCATAAGACGTGATCCAT 59.396 37.037 0.00 0.00 0.00 3.41
1977 2032 7.348080 AGAGGTATTCATTCATAAGACGTGA 57.652 36.000 0.00 0.00 0.00 4.35
1980 2035 6.749139 TGGAGAGGTATTCATTCATAAGACG 58.251 40.000 0.00 0.00 0.00 4.18
1989 2044 8.416329 GCAAAAATACATGGAGAGGTATTCATT 58.584 33.333 0.00 0.00 37.94 2.57
1995 2050 7.716799 AAATGCAAAAATACATGGAGAGGTA 57.283 32.000 0.00 0.00 0.00 3.08
1998 2053 8.767478 AGAAAAATGCAAAAATACATGGAGAG 57.233 30.769 0.00 0.00 0.00 3.20
2000 2080 8.776470 ACAAGAAAAATGCAAAAATACATGGAG 58.224 29.630 0.00 0.00 0.00 3.86
2040 2120 5.633830 ACTCAAACATGACAATTAGCCTG 57.366 39.130 0.00 0.00 0.00 4.85
2046 2126 4.040339 GGGGGAAACTCAAACATGACAATT 59.960 41.667 0.00 0.00 0.00 2.32
2048 2128 2.962421 GGGGGAAACTCAAACATGACAA 59.038 45.455 0.00 0.00 0.00 3.18
2050 2130 2.558359 CTGGGGGAAACTCAAACATGAC 59.442 50.000 0.00 0.00 0.00 3.06
2065 2146 0.404040 TCTGCAGTAAAACCTGGGGG 59.596 55.000 14.67 0.00 38.88 5.40
2068 2149 2.851195 ACACTCTGCAGTAAAACCTGG 58.149 47.619 14.67 0.00 32.92 4.45
2076 2157 2.808919 AGAGCCTAACACTCTGCAGTA 58.191 47.619 14.67 0.00 42.88 2.74
2087 2168 9.760077 TTGTTAAATGCTATAGTAGAGCCTAAC 57.240 33.333 14.01 16.43 39.30 2.34
2127 2208 7.655328 AGAGCATCACTTAGATACAATACAAGC 59.345 37.037 0.00 0.00 37.82 4.01
2128 2209 8.976471 CAGAGCATCACTTAGATACAATACAAG 58.024 37.037 0.00 0.00 37.82 3.16
2132 2292 7.295322 AGCAGAGCATCACTTAGATACAATA 57.705 36.000 0.00 0.00 37.82 1.90
2138 2298 2.954989 TCGAGCAGAGCATCACTTAGAT 59.045 45.455 0.00 0.00 37.82 1.98
2153 2313 8.341903 CAATACATATAAAAATGGTGTCGAGCA 58.658 33.333 0.00 0.00 0.00 4.26
2156 2316 7.500892 AGGCAATACATATAAAAATGGTGTCGA 59.499 33.333 0.00 0.00 0.00 4.20
2158 2318 9.816354 AAAGGCAATACATATAAAAATGGTGTC 57.184 29.630 0.00 0.00 0.00 3.67
2165 2325 9.883142 CCCAAGAAAAGGCAATACATATAAAAA 57.117 29.630 0.00 0.00 0.00 1.94
2204 2364 9.559958 AACATAAGAGCAATTGAAATTACGAAG 57.440 29.630 10.34 0.00 0.00 3.79
2207 2367 9.003112 CAGAACATAAGAGCAATTGAAATTACG 57.997 33.333 10.34 0.00 0.00 3.18
2257 2418 8.548877 ACTACAAAAACTACCATGATAGGATGT 58.451 33.333 0.00 0.99 0.00 3.06
2258 2419 8.964476 ACTACAAAAACTACCATGATAGGATG 57.036 34.615 0.00 0.00 0.00 3.51
2259 2420 9.614792 GAACTACAAAAACTACCATGATAGGAT 57.385 33.333 0.00 0.00 0.00 3.24
2281 2447 9.368416 TGTAAATAGCTGGATGACTATAGAACT 57.632 33.333 6.78 0.00 0.00 3.01
2330 2498 5.418524 ACATTACCACATCAGCTGCAAAATA 59.581 36.000 9.47 0.00 0.00 1.40
2416 2584 4.354893 AATGAGCTCATTCTCCTCATCC 57.645 45.455 31.78 0.00 43.45 3.51
2477 2645 4.813697 GGATATGCAGAACCTGAGAAGAAC 59.186 45.833 0.00 0.00 32.44 3.01
2789 2957 9.823647 GAAGGAGAGAAAATACTCACATTGATA 57.176 33.333 0.00 0.00 39.14 2.15
2795 2963 5.780282 TCTGGAAGGAGAGAAAATACTCACA 59.220 40.000 0.00 0.00 39.14 3.58
2840 3008 4.654915 TGAGATCCAGATTTTCAAGTGCA 58.345 39.130 0.00 0.00 0.00 4.57
2930 3098 7.701809 TTATTTTTAAAGGAAACCAACTGCG 57.298 32.000 0.00 0.00 0.00 5.18
2975 3145 3.434319 GGCATGCACCACTCCACG 61.434 66.667 21.36 0.00 0.00 4.94
2981 3151 1.113788 ATGGTTATGGCATGCACCAC 58.886 50.000 26.79 13.36 44.17 4.16
3048 3320 9.658799 CATAGGTGATCCGAATTATGAAAGTAT 57.341 33.333 0.00 0.00 39.05 2.12
3057 3329 7.504574 TCAACTCTACATAGGTGATCCGAATTA 59.495 37.037 0.00 0.00 38.28 1.40
3102 3450 7.064609 CAGTGAACAGTAAATCATCCATAACGT 59.935 37.037 0.00 0.00 0.00 3.99
3113 3461 9.567848 TTTCTTGAAAACAGTGAACAGTAAATC 57.432 29.630 0.00 0.00 0.00 2.17
3170 3518 8.178964 TCCGATTTATAAAAATCTGAACGGTTG 58.821 33.333 1.21 0.00 45.92 3.77
3173 3521 7.916552 AGTCCGATTTATAAAAATCTGAACGG 58.083 34.615 1.21 0.00 45.92 4.44
3204 3648 5.738619 TGTCCTCAACAGCTAAGACATAA 57.261 39.130 0.00 0.00 32.81 1.90
3279 3725 6.884832 TCTGACAGACCAGAAAGTCTTTAAA 58.115 36.000 0.00 0.00 44.83 1.52
3282 3728 5.559148 ATCTGACAGACCAGAAAGTCTTT 57.441 39.130 7.47 0.00 44.83 2.52
3283 3729 5.163258 ACAATCTGACAGACCAGAAAGTCTT 60.163 40.000 7.47 0.00 44.83 3.01
3285 3731 4.636249 ACAATCTGACAGACCAGAAAGTC 58.364 43.478 7.47 0.00 45.22 3.01
3286 3732 4.696479 ACAATCTGACAGACCAGAAAGT 57.304 40.909 7.47 0.00 45.22 2.66
3287 3733 7.678947 AATTACAATCTGACAGACCAGAAAG 57.321 36.000 7.47 0.00 45.22 2.62
3288 3734 7.502226 ACAAATTACAATCTGACAGACCAGAAA 59.498 33.333 7.47 0.00 45.22 2.52
3289 3735 6.998074 ACAAATTACAATCTGACAGACCAGAA 59.002 34.615 7.47 0.90 45.22 3.02
3297 3743 8.849168 ACTCATCAAACAAATTACAATCTGACA 58.151 29.630 0.00 0.00 0.00 3.58
3299 3745 9.681692 CAACTCATCAAACAAATTACAATCTGA 57.318 29.630 0.00 0.00 0.00 3.27
3308 3754 4.298332 GTCCGCAACTCATCAAACAAATT 58.702 39.130 0.00 0.00 0.00 1.82
3340 3786 3.078594 AGGCGTTTGTGAACAATCAAC 57.921 42.857 0.00 0.00 37.30 3.18
3381 3842 3.070018 CTCGGCTATCACATTTCCATCC 58.930 50.000 0.00 0.00 0.00 3.51
3519 3980 3.384789 TGGCTTATCGTCTGCAAGTAGAT 59.615 43.478 0.00 0.00 35.88 1.98
3715 4180 1.474017 ACAACAGACGAACGAACTCG 58.526 50.000 0.14 0.00 44.50 4.18
3813 4359 7.604164 CACCATCACAAGTTTCTTATACAGACT 59.396 37.037 0.00 0.00 0.00 3.24
3884 4431 0.245539 ATGTGCTGTTGCTGGATTGC 59.754 50.000 0.00 0.00 40.48 3.56
3900 4447 5.711506 TCACAAGAAATTGGTAGCATCATGT 59.288 36.000 0.00 0.00 0.00 3.21
3965 4513 6.521151 GAGGAAAACTCAAATGATCATGGT 57.479 37.500 9.46 3.72 45.85 3.55
3992 4540 2.171448 GGTAGAAGGTGCACAGGATGAT 59.829 50.000 20.43 0.00 39.69 2.45
3993 4541 1.555075 GGTAGAAGGTGCACAGGATGA 59.445 52.381 20.43 0.00 39.69 2.92
3994 4542 1.278985 TGGTAGAAGGTGCACAGGATG 59.721 52.381 20.43 0.00 46.00 3.51
3995 4543 1.656587 TGGTAGAAGGTGCACAGGAT 58.343 50.000 20.43 4.09 0.00 3.24
3996 4544 1.555075 GATGGTAGAAGGTGCACAGGA 59.445 52.381 20.43 0.00 0.00 3.86
3997 4545 1.407437 GGATGGTAGAAGGTGCACAGG 60.407 57.143 20.43 0.00 0.00 4.00
3998 4546 1.556911 AGGATGGTAGAAGGTGCACAG 59.443 52.381 20.43 0.00 0.00 3.66
3999 4547 1.656587 AGGATGGTAGAAGGTGCACA 58.343 50.000 20.43 0.00 0.00 4.57
4000 4548 2.789409 AAGGATGGTAGAAGGTGCAC 57.211 50.000 8.80 8.80 0.00 4.57
4001 4549 3.420893 CAAAAGGATGGTAGAAGGTGCA 58.579 45.455 0.00 0.00 0.00 4.57
4002 4550 2.164422 GCAAAAGGATGGTAGAAGGTGC 59.836 50.000 0.00 0.00 0.00 5.01
4003 4551 3.690460 AGCAAAAGGATGGTAGAAGGTG 58.310 45.455 0.00 0.00 0.00 4.00
4004 4552 4.388577 AAGCAAAAGGATGGTAGAAGGT 57.611 40.909 0.00 0.00 0.00 3.50
4005 4553 4.158579 GGAAAGCAAAAGGATGGTAGAAGG 59.841 45.833 0.00 0.00 0.00 3.46
4006 4554 4.158579 GGGAAAGCAAAAGGATGGTAGAAG 59.841 45.833 0.00 0.00 0.00 2.85
4007 4555 4.086457 GGGAAAGCAAAAGGATGGTAGAA 58.914 43.478 0.00 0.00 0.00 2.10
4008 4556 3.333680 AGGGAAAGCAAAAGGATGGTAGA 59.666 43.478 0.00 0.00 0.00 2.59
4009 4557 3.701664 AGGGAAAGCAAAAGGATGGTAG 58.298 45.455 0.00 0.00 0.00 3.18
4010 4558 3.825908 AGGGAAAGCAAAAGGATGGTA 57.174 42.857 0.00 0.00 0.00 3.25
4011 4559 2.634453 CAAGGGAAAGCAAAAGGATGGT 59.366 45.455 0.00 0.00 0.00 3.55
4012 4560 2.613725 GCAAGGGAAAGCAAAAGGATGG 60.614 50.000 0.00 0.00 0.00 3.51
4013 4561 2.037511 TGCAAGGGAAAGCAAAAGGATG 59.962 45.455 0.00 0.00 37.90 3.51
4014 4562 2.301009 CTGCAAGGGAAAGCAAAAGGAT 59.699 45.455 0.00 0.00 40.73 3.24
4015 4563 1.688197 CTGCAAGGGAAAGCAAAAGGA 59.312 47.619 0.00 0.00 40.73 3.36
4016 4564 2.159327 CTGCAAGGGAAAGCAAAAGG 57.841 50.000 0.00 0.00 40.73 3.11
4064 4612 1.141053 GCATATATAGGAAGGGCCCGG 59.859 57.143 18.44 0.00 37.37 5.73
4139 4687 1.573108 CTGACCAGAAGAAGGCCCTA 58.427 55.000 0.00 0.00 0.00 3.53
4217 4765 0.822164 CTAGACCCCCGTTCACGAAT 59.178 55.000 0.00 0.00 43.02 3.34
4246 4794 3.058708 ACAGACATTCATGTGTTTGAGCG 60.059 43.478 12.27 0.00 41.95 5.03
4279 4827 2.618241 TCATGCAGTTTTGACAGGTGAC 59.382 45.455 0.00 0.00 0.00 3.67
4372 4920 1.817099 GACGCAGCTGAATCCCCAG 60.817 63.158 20.43 0.00 37.23 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.