Multiple sequence alignment - TraesCS3A01G355000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G355000 chr3A 100.000 3392 0 0 1 3392 602852817 602856208 0.000000e+00 6264.0
1 TraesCS3A01G355000 chr3A 77.778 153 28 6 1657 1806 602860727 602860876 4.660000e-14 89.8
2 TraesCS3A01G355000 chr3B 89.874 1432 71 29 1165 2559 610534712 610536106 0.000000e+00 1773.0
3 TraesCS3A01G355000 chr3B 87.874 635 51 14 556 1175 610534007 610534630 0.000000e+00 723.0
4 TraesCS3A01G355000 chr3B 85.889 574 37 16 1 562 610533439 610533980 3.800000e-159 571.0
5 TraesCS3A01G355000 chr3D 89.514 1421 107 16 1165 2565 460441706 460443104 0.000000e+00 1760.0
6 TraesCS3A01G355000 chr3D 94.964 556 18 5 629 1180 460441142 460441691 0.000000e+00 863.0
7 TraesCS3A01G355000 chr3D 89.181 647 40 14 1 635 460439336 460439964 0.000000e+00 780.0
8 TraesCS3A01G355000 chr5B 94.542 513 26 2 2773 3285 87289226 87289736 0.000000e+00 791.0
9 TraesCS3A01G355000 chr7A 94.152 513 29 1 2773 3285 31889754 31889243 0.000000e+00 780.0
10 TraesCS3A01G355000 chr7A 93.436 518 31 3 2769 3285 181707960 181708475 0.000000e+00 765.0
11 TraesCS3A01G355000 chr5A 94.152 513 29 1 2773 3285 275092474 275091963 0.000000e+00 780.0
12 TraesCS3A01G355000 chr5A 92.816 515 34 3 2773 3285 632592677 632592164 0.000000e+00 743.0
13 TraesCS3A01G355000 chrUn 92.843 517 35 2 2770 3285 115038644 115039159 0.000000e+00 749.0
14 TraesCS3A01G355000 chr2B 94.106 492 28 1 2794 3285 256961043 256961533 0.000000e+00 747.0
15 TraesCS3A01G355000 chr2A 92.442 516 34 5 2772 3285 3514500 3515012 0.000000e+00 732.0
16 TraesCS3A01G355000 chr1D 90.476 567 37 10 2773 3327 416664990 416665551 0.000000e+00 732.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G355000 chr3A 602852817 602856208 3391 False 6264.000000 6264 100.000000 1 3392 1 chr3A.!!$F1 3391
1 TraesCS3A01G355000 chr3B 610533439 610536106 2667 False 1022.333333 1773 87.879000 1 2559 3 chr3B.!!$F1 2558
2 TraesCS3A01G355000 chr3D 460439336 460443104 3768 False 1134.333333 1760 91.219667 1 2565 3 chr3D.!!$F1 2564
3 TraesCS3A01G355000 chr5B 87289226 87289736 510 False 791.000000 791 94.542000 2773 3285 1 chr5B.!!$F1 512
4 TraesCS3A01G355000 chr7A 31889243 31889754 511 True 780.000000 780 94.152000 2773 3285 1 chr7A.!!$R1 512
5 TraesCS3A01G355000 chr7A 181707960 181708475 515 False 765.000000 765 93.436000 2769 3285 1 chr7A.!!$F1 516
6 TraesCS3A01G355000 chr5A 275091963 275092474 511 True 780.000000 780 94.152000 2773 3285 1 chr5A.!!$R1 512
7 TraesCS3A01G355000 chr5A 632592164 632592677 513 True 743.000000 743 92.816000 2773 3285 1 chr5A.!!$R2 512
8 TraesCS3A01G355000 chrUn 115038644 115039159 515 False 749.000000 749 92.843000 2770 3285 1 chrUn.!!$F1 515
9 TraesCS3A01G355000 chr2A 3514500 3515012 512 False 732.000000 732 92.442000 2772 3285 1 chr2A.!!$F1 513
10 TraesCS3A01G355000 chr1D 416664990 416665551 561 False 732.000000 732 90.476000 2773 3327 1 chr1D.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
554 588 0.250424 TGTCACCATCTGCACACAGG 60.250 55.0 0.0 0.0 44.59 4.00 F
1334 2693 0.172803 GTCTGCGGTATGGACGAACT 59.827 55.0 0.0 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1885 3275 0.515127 CGAACCTGCACGCAAATACA 59.485 50.0 0.0 0.0 0.0 2.29 R
2754 4158 0.033405 AGCTGGCGAGTAGAGGGTTA 60.033 55.0 0.0 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 1.979155 CTCCTCGAGTCCTGCACCA 60.979 63.158 12.31 0.00 0.00 4.17
166 170 3.292936 GCACCTGCTGCTGCTGTT 61.293 61.111 17.00 1.63 43.33 3.16
167 171 2.643272 CACCTGCTGCTGCTGTTG 59.357 61.111 17.00 11.05 40.48 3.33
168 172 3.292936 ACCTGCTGCTGCTGTTGC 61.293 61.111 17.00 4.76 40.48 4.17
169 173 2.984155 CCTGCTGCTGCTGTTGCT 60.984 61.111 17.00 0.00 40.48 3.91
170 174 2.255554 CTGCTGCTGCTGTTGCTG 59.744 61.111 17.00 4.65 40.48 4.41
176 180 4.266983 CTGCTGTTGCTGCTACGA 57.733 55.556 9.51 0.00 40.48 3.43
177 181 1.784062 CTGCTGTTGCTGCTACGAC 59.216 57.895 9.51 4.82 40.48 4.34
178 182 0.945743 CTGCTGTTGCTGCTACGACA 60.946 55.000 9.51 8.80 40.48 4.35
179 183 0.320683 TGCTGTTGCTGCTACGACAT 60.321 50.000 9.51 0.00 40.48 3.06
180 184 0.371645 GCTGTTGCTGCTACGACATC 59.628 55.000 9.51 0.00 33.48 3.06
181 185 2.001812 CTGTTGCTGCTACGACATCT 57.998 50.000 9.51 0.00 33.48 2.90
182 186 1.657594 CTGTTGCTGCTACGACATCTG 59.342 52.381 9.51 0.00 33.48 2.90
183 187 1.000843 TGTTGCTGCTACGACATCTGT 59.999 47.619 9.51 0.00 0.00 3.41
220 246 7.028962 TGAAATTTTAGAGCACGATCCAAATG 58.971 34.615 0.00 0.00 0.00 2.32
254 280 4.737054 ACAATAACGAACCACCGTACTAG 58.263 43.478 0.00 0.00 42.54 2.57
255 281 2.919666 TAACGAACCACCGTACTAGC 57.080 50.000 0.00 0.00 42.54 3.42
310 342 3.243234 ACGAACGATATCTGAAGCTCTGG 60.243 47.826 0.34 0.00 0.00 3.86
323 355 2.950781 AGCTCTGGATTCCATAGTCGA 58.049 47.619 16.85 5.85 31.46 4.20
392 425 3.243177 GGAATAAGATTGCGACGTGACTC 59.757 47.826 0.00 0.00 0.00 3.36
400 433 1.132453 TGCGACGTGACTCAGAATAGG 59.868 52.381 0.00 0.00 0.00 2.57
404 437 3.486043 CGACGTGACTCAGAATAGGTGAG 60.486 52.174 0.00 0.00 45.94 3.51
413 446 3.445450 TCAGAATAGGTGAGCTGACTGTC 59.555 47.826 2.58 0.00 32.85 3.51
427 460 3.176411 TGACTGTCCCACTGATTCTGAT 58.824 45.455 5.17 0.00 0.00 2.90
441 474 0.867329 TCTGATCGAATGCACTCGCG 60.867 55.000 13.61 0.00 42.97 5.87
442 475 2.243810 GATCGAATGCACTCGCGC 59.756 61.111 13.61 3.10 42.97 6.86
478 511 1.169661 TTGTTTTCCATGCTCGCCGT 61.170 50.000 0.00 0.00 0.00 5.68
479 512 1.134694 GTTTTCCATGCTCGCCGTC 59.865 57.895 0.00 0.00 0.00 4.79
480 513 2.387445 TTTTCCATGCTCGCCGTCG 61.387 57.895 0.00 0.00 0.00 5.12
490 523 2.126228 CGCCGTCGCTGGAGTTTA 60.126 61.111 0.00 0.00 0.00 2.01
520 554 6.487103 GCAAGTTGTAGATTTAAATCTCCCG 58.513 40.000 29.45 15.19 44.30 5.14
554 588 0.250424 TGTCACCATCTGCACACAGG 60.250 55.000 0.00 0.00 44.59 4.00
570 637 2.023882 GGCTCGTACTACGCCGTC 59.976 66.667 0.00 0.00 42.21 4.79
583 650 2.349755 CCGTCCCATTCCGTTGGT 59.650 61.111 0.00 0.00 34.77 3.67
758 2014 2.618709 GCCATGGTATGTTAAGGAGCAC 59.381 50.000 14.67 0.00 0.00 4.40
867 2123 6.323996 TCAAGTATGAAGAGGTCGGTTCATAT 59.676 38.462 7.77 0.00 43.88 1.78
888 2144 2.357517 CCGCAGCACTCCGAAGTT 60.358 61.111 0.00 0.00 31.71 2.66
899 2155 3.060070 CACTCCGAAGTTTAAACACGGTC 60.060 47.826 33.79 20.37 44.77 4.79
946 2205 5.127693 TGCTAACTCTGAAGTCTGAACTC 57.872 43.478 0.00 0.00 33.48 3.01
1005 2264 1.915614 CTGTTCACCTGCGCATGGAC 61.916 60.000 26.07 20.68 0.00 4.02
1060 2320 1.002257 TGCCATGGTACCAGTGCAG 60.002 57.895 28.16 13.79 33.49 4.41
1062 2322 1.308069 GCCATGGTACCAGTGCAGTG 61.308 60.000 25.69 14.95 0.00 3.66
1063 2323 1.308069 CCATGGTACCAGTGCAGTGC 61.308 60.000 21.41 8.58 0.00 4.40
1064 2324 0.606130 CATGGTACCAGTGCAGTGCA 60.606 55.000 21.41 15.37 35.60 4.57
1132 2398 3.279434 ACAAGTGTTCTTCTTGGTGTCC 58.721 45.455 9.82 0.00 44.29 4.02
1333 2692 2.662150 GTCTGCGGTATGGACGAAC 58.338 57.895 0.00 0.00 0.00 3.95
1334 2693 0.172803 GTCTGCGGTATGGACGAACT 59.827 55.000 0.00 0.00 0.00 3.01
1336 2695 2.034305 GTCTGCGGTATGGACGAACTAT 59.966 50.000 0.00 0.00 0.00 2.12
1337 2696 3.251729 GTCTGCGGTATGGACGAACTATA 59.748 47.826 0.00 0.00 0.00 1.31
1338 2697 4.077108 TCTGCGGTATGGACGAACTATAT 58.923 43.478 0.00 0.00 0.00 0.86
1340 2699 5.122869 TCTGCGGTATGGACGAACTATATAC 59.877 44.000 0.00 0.00 0.00 1.47
1341 2700 4.761227 TGCGGTATGGACGAACTATATACA 59.239 41.667 0.00 0.00 0.00 2.29
1347 2710 2.352127 GGACGAACTATATACACCGGGC 60.352 54.545 6.32 0.00 0.00 6.13
1361 2724 0.248866 CCGGGCACACAAACTGAAAC 60.249 55.000 0.00 0.00 0.00 2.78
1365 2735 2.362077 GGGCACACAAACTGAAACTGAT 59.638 45.455 0.00 0.00 0.00 2.90
1375 2745 7.590322 CACAAACTGAAACTGATCTCTGAATTG 59.410 37.037 0.00 2.46 0.00 2.32
1485 2855 2.401078 TCCTCCACAGGAAGGAGCCA 62.401 60.000 3.72 0.00 46.84 4.75
1571 2941 4.271696 TCCACCTATAATGAATCCTGCG 57.728 45.455 0.00 0.00 0.00 5.18
1575 2945 5.338381 CCACCTATAATGAATCCTGCGGTAT 60.338 44.000 0.00 0.00 0.00 2.73
1576 2946 6.173339 CACCTATAATGAATCCTGCGGTATT 58.827 40.000 0.00 0.00 0.00 1.89
1601 2971 3.326889 CTCAATGCAACACGGGGCG 62.327 63.158 0.00 0.00 0.00 6.13
1602 2972 3.361158 CAATGCAACACGGGGCGA 61.361 61.111 0.00 0.00 0.00 5.54
1603 2973 3.055719 AATGCAACACGGGGCGAG 61.056 61.111 0.00 0.00 0.00 5.03
1645 3016 4.742167 TGTGCATGGTTGTTTGTTAATTCG 59.258 37.500 0.00 0.00 0.00 3.34
1646 3017 4.742659 GTGCATGGTTGTTTGTTAATTCGT 59.257 37.500 0.00 0.00 0.00 3.85
1647 3018 5.233263 GTGCATGGTTGTTTGTTAATTCGTT 59.767 36.000 0.00 0.00 0.00 3.85
1648 3019 6.418226 GTGCATGGTTGTTTGTTAATTCGTTA 59.582 34.615 0.00 0.00 0.00 3.18
1649 3020 7.115663 GTGCATGGTTGTTTGTTAATTCGTTAT 59.884 33.333 0.00 0.00 0.00 1.89
1650 3021 7.653713 TGCATGGTTGTTTGTTAATTCGTTATT 59.346 29.630 0.00 0.00 0.00 1.40
1651 3022 8.159709 GCATGGTTGTTTGTTAATTCGTTATTC 58.840 33.333 0.00 0.00 0.00 1.75
1730 3103 4.175337 ATGGTATGCGCGGTGGCT 62.175 61.111 8.83 0.00 36.88 4.75
1772 3145 0.459899 TCCCGGACATCATCGACAAG 59.540 55.000 0.73 0.00 0.00 3.16
1775 3148 1.405526 CCGGACATCATCGACAAGGTT 60.406 52.381 0.00 0.00 0.00 3.50
1793 3166 5.441718 AGGTTTGCAAAGATCCAGAGATA 57.558 39.130 13.26 0.00 30.90 1.98
1800 3173 8.408043 TTGCAAAGATCCAGAGATAAGAAAAA 57.592 30.769 0.00 0.00 30.90 1.94
1821 3194 6.786967 AAAAGGTACTCGGTCATATGTACT 57.213 37.500 1.90 0.00 38.49 2.73
1822 3195 6.388435 AAAGGTACTCGGTCATATGTACTC 57.612 41.667 1.90 0.00 38.49 2.59
1824 3197 5.443283 AGGTACTCGGTCATATGTACTCAA 58.557 41.667 1.90 0.00 36.48 3.02
1825 3198 5.298777 AGGTACTCGGTCATATGTACTCAAC 59.701 44.000 1.90 0.00 36.48 3.18
1827 3200 5.916661 ACTCGGTCATATGTACTCAACTT 57.083 39.130 1.90 0.00 0.00 2.66
1856 3232 4.056050 TGCTCTTAACGACTGGAAGAAAC 58.944 43.478 0.00 0.00 37.43 2.78
1873 3263 4.359706 AGAAACGGTGTTGCTGAATTTTC 58.640 39.130 0.00 0.00 0.00 2.29
1874 3264 2.793278 ACGGTGTTGCTGAATTTTCC 57.207 45.000 0.00 0.00 0.00 3.13
1875 3265 2.306847 ACGGTGTTGCTGAATTTTCCT 58.693 42.857 0.00 0.00 0.00 3.36
1876 3266 3.482436 ACGGTGTTGCTGAATTTTCCTA 58.518 40.909 0.00 0.00 0.00 2.94
1877 3267 3.252458 ACGGTGTTGCTGAATTTTCCTAC 59.748 43.478 0.00 0.00 0.00 3.18
1879 3269 3.252458 GGTGTTGCTGAATTTTCCTACGT 59.748 43.478 0.00 0.00 0.00 3.57
1880 3270 4.219033 GTGTTGCTGAATTTTCCTACGTG 58.781 43.478 0.00 0.00 0.00 4.49
1881 3271 3.880490 TGTTGCTGAATTTTCCTACGTGT 59.120 39.130 0.00 0.00 0.00 4.49
1882 3272 4.336993 TGTTGCTGAATTTTCCTACGTGTT 59.663 37.500 0.00 0.00 0.00 3.32
1883 3273 5.163602 TGTTGCTGAATTTTCCTACGTGTTT 60.164 36.000 0.00 0.00 0.00 2.83
1884 3274 4.854399 TGCTGAATTTTCCTACGTGTTTG 58.146 39.130 0.00 0.00 0.00 2.93
1885 3275 4.336993 TGCTGAATTTTCCTACGTGTTTGT 59.663 37.500 0.00 0.00 0.00 2.83
1950 3340 0.034670 AGCTCCCATTGAAGACCTGC 60.035 55.000 0.00 0.00 0.00 4.85
1990 3380 1.740718 GCCTGGACATCGAGAAGAACC 60.741 57.143 0.00 0.00 0.00 3.62
2025 3415 6.563037 ATCTCCCTTCCTAGTTAGAAAACC 57.437 41.667 0.00 0.00 36.15 3.27
2041 3431 5.489249 AGAAAACCGTCTAATTTCTCTCCC 58.511 41.667 0.00 0.00 38.65 4.30
2088 3478 3.897325 TGCGTGTAGTCTCAGTAACTTG 58.103 45.455 0.00 0.00 0.00 3.16
2092 3490 4.615452 CGTGTAGTCTCAGTAACTTGGGTC 60.615 50.000 0.00 0.00 0.00 4.46
2127 3525 4.989168 ACAGAGAAGCTACTAACGTTTTGG 59.011 41.667 5.91 0.00 0.00 3.28
2166 3564 2.186826 GTTCTTGGTGCTGCACGGT 61.187 57.895 24.86 0.00 34.83 4.83
2192 3590 1.469251 CGACATCGTGACGGATCCTTT 60.469 52.381 10.75 0.00 32.33 3.11
2361 3759 3.853671 CGAATTGTGCAGCTAATGTTTCC 59.146 43.478 0.00 0.00 0.00 3.13
2366 3764 3.000727 GTGCAGCTAATGTTTCCGTAGT 58.999 45.455 0.00 0.00 0.00 2.73
2398 3796 1.645997 GCAAGCGCCTAGAAGATGC 59.354 57.895 2.29 0.00 0.00 3.91
2492 3890 1.832167 GCTTGGGCAGGGTGTGAAA 60.832 57.895 0.00 0.00 38.54 2.69
2493 3891 1.809567 GCTTGGGCAGGGTGTGAAAG 61.810 60.000 0.00 0.00 38.54 2.62
2565 3969 7.493971 TGAAAACCAAGGTATTGAAAATGTGTG 59.506 33.333 0.00 0.00 38.83 3.82
2566 3970 6.478512 AACCAAGGTATTGAAAATGTGTGT 57.521 33.333 0.00 0.00 38.83 3.72
2567 3971 7.589958 AACCAAGGTATTGAAAATGTGTGTA 57.410 32.000 0.00 0.00 38.83 2.90
2568 3972 7.775053 ACCAAGGTATTGAAAATGTGTGTAT 57.225 32.000 0.00 0.00 38.83 2.29
2569 3973 7.601856 ACCAAGGTATTGAAAATGTGTGTATG 58.398 34.615 0.00 0.00 38.83 2.39
2570 3974 6.531240 CCAAGGTATTGAAAATGTGTGTATGC 59.469 38.462 0.00 0.00 38.83 3.14
2571 3975 5.879237 AGGTATTGAAAATGTGTGTATGCG 58.121 37.500 0.00 0.00 0.00 4.73
2572 3976 5.034152 GGTATTGAAAATGTGTGTATGCGG 58.966 41.667 0.00 0.00 0.00 5.69
2573 3977 4.782019 ATTGAAAATGTGTGTATGCGGT 57.218 36.364 0.00 0.00 0.00 5.68
2574 3978 4.576216 TTGAAAATGTGTGTATGCGGTT 57.424 36.364 0.00 0.00 0.00 4.44
2575 3979 3.894920 TGAAAATGTGTGTATGCGGTTG 58.105 40.909 0.00 0.00 0.00 3.77
2576 3980 2.346099 AAATGTGTGTATGCGGTTGC 57.654 45.000 0.00 0.00 43.20 4.17
2577 3981 0.525761 AATGTGTGTATGCGGTTGCC 59.474 50.000 0.00 0.00 41.78 4.52
2578 3982 0.607762 ATGTGTGTATGCGGTTGCCA 60.608 50.000 0.00 0.00 41.78 4.92
2579 3983 1.209127 GTGTGTATGCGGTTGCCAC 59.791 57.895 0.00 0.00 41.78 5.01
2580 3984 1.072332 TGTGTATGCGGTTGCCACT 59.928 52.632 0.00 0.00 41.78 4.00
2581 3985 0.536233 TGTGTATGCGGTTGCCACTT 60.536 50.000 0.00 0.00 41.78 3.16
2582 3986 0.168128 GTGTATGCGGTTGCCACTTC 59.832 55.000 0.00 0.00 41.78 3.01
2583 3987 0.036164 TGTATGCGGTTGCCACTTCT 59.964 50.000 0.00 0.00 41.78 2.85
2584 3988 1.276705 TGTATGCGGTTGCCACTTCTA 59.723 47.619 0.00 0.00 41.78 2.10
2585 3989 1.664151 GTATGCGGTTGCCACTTCTAC 59.336 52.381 0.00 0.00 41.78 2.59
2586 3990 0.324943 ATGCGGTTGCCACTTCTACT 59.675 50.000 0.00 0.00 41.78 2.57
2587 3991 0.602638 TGCGGTTGCCACTTCTACTG 60.603 55.000 0.00 0.00 41.78 2.74
2588 3992 1.298859 GCGGTTGCCACTTCTACTGG 61.299 60.000 0.00 0.00 33.98 4.00
2589 3993 0.034896 CGGTTGCCACTTCTACTGGT 59.965 55.000 0.00 0.00 0.00 4.00
2590 3994 1.274167 CGGTTGCCACTTCTACTGGTA 59.726 52.381 0.00 0.00 0.00 3.25
2591 3995 2.093658 CGGTTGCCACTTCTACTGGTAT 60.094 50.000 0.00 0.00 0.00 2.73
2592 3996 3.270877 GGTTGCCACTTCTACTGGTATG 58.729 50.000 0.00 0.00 0.00 2.39
2593 3997 2.678336 GTTGCCACTTCTACTGGTATGC 59.322 50.000 0.00 0.00 0.00 3.14
2594 3998 1.905894 TGCCACTTCTACTGGTATGCA 59.094 47.619 0.00 0.00 0.00 3.96
2595 3999 2.093500 TGCCACTTCTACTGGTATGCAG 60.093 50.000 0.00 0.00 0.00 4.41
2596 4000 2.555199 CCACTTCTACTGGTATGCAGC 58.445 52.381 0.00 0.00 0.00 5.25
2597 4001 2.169352 CCACTTCTACTGGTATGCAGCT 59.831 50.000 0.00 0.00 0.00 4.24
2598 4002 3.452474 CACTTCTACTGGTATGCAGCTC 58.548 50.000 0.00 0.00 0.00 4.09
2599 4003 3.131933 CACTTCTACTGGTATGCAGCTCT 59.868 47.826 0.00 0.00 0.00 4.09
2600 4004 3.131933 ACTTCTACTGGTATGCAGCTCTG 59.868 47.826 0.00 0.00 0.00 3.35
2601 4005 3.018423 TCTACTGGTATGCAGCTCTGA 57.982 47.619 0.29 0.00 0.00 3.27
2602 4006 2.690497 TCTACTGGTATGCAGCTCTGAC 59.310 50.000 0.29 0.00 0.00 3.51
2603 4007 0.539051 ACTGGTATGCAGCTCTGACC 59.461 55.000 0.29 0.55 0.00 4.02
2604 4008 0.179062 CTGGTATGCAGCTCTGACCC 60.179 60.000 0.29 0.00 0.00 4.46
2605 4009 0.618680 TGGTATGCAGCTCTGACCCT 60.619 55.000 0.29 0.00 0.00 4.34
2606 4010 1.342975 TGGTATGCAGCTCTGACCCTA 60.343 52.381 0.29 0.00 0.00 3.53
2607 4011 1.342819 GGTATGCAGCTCTGACCCTAG 59.657 57.143 0.29 0.00 0.00 3.02
2608 4012 2.035632 GTATGCAGCTCTGACCCTAGT 58.964 52.381 0.29 0.00 0.00 2.57
2609 4013 1.577736 ATGCAGCTCTGACCCTAGTT 58.422 50.000 0.29 0.00 0.00 2.24
2610 4014 0.610174 TGCAGCTCTGACCCTAGTTG 59.390 55.000 0.29 0.00 0.00 3.16
2611 4015 0.610687 GCAGCTCTGACCCTAGTTGT 59.389 55.000 0.29 0.00 0.00 3.32
2612 4016 1.674221 GCAGCTCTGACCCTAGTTGTG 60.674 57.143 0.29 0.00 0.00 3.33
2613 4017 1.620819 CAGCTCTGACCCTAGTTGTGT 59.379 52.381 0.00 0.00 0.00 3.72
2614 4018 2.826128 CAGCTCTGACCCTAGTTGTGTA 59.174 50.000 0.00 0.00 0.00 2.90
2615 4019 3.449018 CAGCTCTGACCCTAGTTGTGTAT 59.551 47.826 0.00 0.00 0.00 2.29
2616 4020 3.449018 AGCTCTGACCCTAGTTGTGTATG 59.551 47.826 0.00 0.00 0.00 2.39
2617 4021 3.430929 GCTCTGACCCTAGTTGTGTATGG 60.431 52.174 0.00 0.00 0.00 2.74
2618 4022 2.500098 TCTGACCCTAGTTGTGTATGGC 59.500 50.000 0.00 0.00 0.00 4.40
2619 4023 2.236146 CTGACCCTAGTTGTGTATGGCA 59.764 50.000 0.00 0.00 0.00 4.92
2620 4024 2.843730 TGACCCTAGTTGTGTATGGCAT 59.156 45.455 4.88 4.88 0.00 4.40
2621 4025 3.265737 TGACCCTAGTTGTGTATGGCATT 59.734 43.478 4.78 0.00 0.00 3.56
2622 4026 3.877508 GACCCTAGTTGTGTATGGCATTC 59.122 47.826 4.78 0.00 0.00 2.67
2623 4027 3.523564 ACCCTAGTTGTGTATGGCATTCT 59.476 43.478 4.78 0.00 0.00 2.40
2624 4028 4.130118 CCCTAGTTGTGTATGGCATTCTC 58.870 47.826 4.78 1.83 0.00 2.87
2625 4029 4.130118 CCTAGTTGTGTATGGCATTCTCC 58.870 47.826 4.78 0.00 0.00 3.71
2626 4030 3.719268 AGTTGTGTATGGCATTCTCCA 57.281 42.857 4.78 0.00 40.97 3.86
2627 4031 3.614092 AGTTGTGTATGGCATTCTCCAG 58.386 45.455 4.78 0.00 39.89 3.86
2628 4032 3.009473 AGTTGTGTATGGCATTCTCCAGT 59.991 43.478 4.78 0.00 39.89 4.00
2629 4033 2.989909 TGTGTATGGCATTCTCCAGTG 58.010 47.619 4.78 0.00 39.89 3.66
2630 4034 2.292267 GTGTATGGCATTCTCCAGTGG 58.708 52.381 4.78 1.40 39.89 4.00
2631 4035 1.312815 GTATGGCATTCTCCAGTGGC 58.687 55.000 4.78 0.00 39.89 5.01
2632 4036 3.169378 TGGCATTCTCCAGTGGCA 58.831 55.556 3.51 0.00 46.84 4.92
2633 4037 1.459812 TGGCATTCTCCAGTGGCAA 59.540 52.632 3.51 0.00 46.16 4.52
2634 4038 0.178967 TGGCATTCTCCAGTGGCAAA 60.179 50.000 3.51 1.00 46.16 3.68
2635 4039 0.968405 GGCATTCTCCAGTGGCAAAA 59.032 50.000 3.51 0.00 40.30 2.44
2636 4040 1.344114 GGCATTCTCCAGTGGCAAAAA 59.656 47.619 3.51 0.00 40.30 1.94
2637 4041 2.407090 GCATTCTCCAGTGGCAAAAAC 58.593 47.619 3.51 0.00 0.00 2.43
2638 4042 2.036346 GCATTCTCCAGTGGCAAAAACT 59.964 45.455 3.51 0.00 0.00 2.66
2639 4043 3.255642 GCATTCTCCAGTGGCAAAAACTA 59.744 43.478 3.51 0.00 0.00 2.24
2640 4044 4.082026 GCATTCTCCAGTGGCAAAAACTAT 60.082 41.667 3.51 0.00 0.00 2.12
2641 4045 5.125417 GCATTCTCCAGTGGCAAAAACTATA 59.875 40.000 3.51 0.00 0.00 1.31
2642 4046 6.350110 GCATTCTCCAGTGGCAAAAACTATAA 60.350 38.462 3.51 0.00 0.00 0.98
2643 4047 7.631377 GCATTCTCCAGTGGCAAAAACTATAAT 60.631 37.037 3.51 0.00 0.00 1.28
2644 4048 6.757897 TCTCCAGTGGCAAAAACTATAATG 57.242 37.500 3.51 0.00 0.00 1.90
2645 4049 6.245408 TCTCCAGTGGCAAAAACTATAATGT 58.755 36.000 3.51 0.00 0.00 2.71
2646 4050 6.150976 TCTCCAGTGGCAAAAACTATAATGTG 59.849 38.462 3.51 0.00 0.00 3.21
2647 4051 5.772672 TCCAGTGGCAAAAACTATAATGTGT 59.227 36.000 3.51 0.00 0.00 3.72
2648 4052 6.266558 TCCAGTGGCAAAAACTATAATGTGTT 59.733 34.615 3.51 0.00 0.00 3.32
2649 4053 6.586082 CCAGTGGCAAAAACTATAATGTGTTC 59.414 38.462 0.00 0.00 0.00 3.18
2650 4054 6.586082 CAGTGGCAAAAACTATAATGTGTTCC 59.414 38.462 0.00 0.00 0.00 3.62
2651 4055 6.266558 AGTGGCAAAAACTATAATGTGTTCCA 59.733 34.615 0.00 0.00 0.00 3.53
2652 4056 6.364976 GTGGCAAAAACTATAATGTGTTCCAC 59.635 38.462 0.00 0.00 34.56 4.02
2664 4068 3.963383 GTGTTCCACACGTTCAAGAAT 57.037 42.857 0.00 0.00 39.53 2.40
2665 4069 4.287238 GTGTTCCACACGTTCAAGAATT 57.713 40.909 0.00 0.00 39.53 2.17
2666 4070 4.279659 GTGTTCCACACGTTCAAGAATTC 58.720 43.478 0.00 0.00 39.53 2.17
2667 4071 3.942115 TGTTCCACACGTTCAAGAATTCA 59.058 39.130 8.44 0.00 0.00 2.57
2668 4072 4.578516 TGTTCCACACGTTCAAGAATTCAT 59.421 37.500 8.44 0.00 0.00 2.57
2669 4073 5.067153 TGTTCCACACGTTCAAGAATTCATT 59.933 36.000 8.44 0.00 0.00 2.57
2670 4074 5.356882 TCCACACGTTCAAGAATTCATTC 57.643 39.130 8.44 0.00 37.06 2.67
2671 4075 4.819088 TCCACACGTTCAAGAATTCATTCA 59.181 37.500 8.44 0.00 39.23 2.57
2672 4076 5.298026 TCCACACGTTCAAGAATTCATTCAA 59.702 36.000 8.44 0.00 39.23 2.69
2673 4077 6.016360 TCCACACGTTCAAGAATTCATTCAAT 60.016 34.615 8.44 0.00 39.23 2.57
2674 4078 6.642131 CCACACGTTCAAGAATTCATTCAATT 59.358 34.615 8.44 0.00 39.23 2.32
2675 4079 7.169645 CCACACGTTCAAGAATTCATTCAATTT 59.830 33.333 8.44 0.00 39.23 1.82
2676 4080 9.179552 CACACGTTCAAGAATTCATTCAATTTA 57.820 29.630 8.44 0.00 39.23 1.40
2677 4081 9.180678 ACACGTTCAAGAATTCATTCAATTTAC 57.819 29.630 8.44 0.00 39.23 2.01
2678 4082 8.638565 CACGTTCAAGAATTCATTCAATTTACC 58.361 33.333 8.44 0.00 39.23 2.85
2679 4083 8.356657 ACGTTCAAGAATTCATTCAATTTACCA 58.643 29.630 8.44 0.00 39.23 3.25
2680 4084 8.853345 CGTTCAAGAATTCATTCAATTTACCAG 58.147 33.333 8.44 0.00 39.23 4.00
2681 4085 9.696917 GTTCAAGAATTCATTCAATTTACCAGT 57.303 29.630 8.44 0.00 39.23 4.00
2683 4087 9.695526 TCAAGAATTCATTCAATTTACCAGTTG 57.304 29.630 8.44 0.00 39.23 3.16
2684 4088 9.695526 CAAGAATTCATTCAATTTACCAGTTGA 57.304 29.630 8.44 0.00 39.23 3.18
2685 4089 9.696917 AAGAATTCATTCAATTTACCAGTTGAC 57.303 29.630 8.44 0.00 39.23 3.18
2686 4090 9.082313 AGAATTCATTCAATTTACCAGTTGACT 57.918 29.630 8.44 0.00 39.23 3.41
2687 4091 9.696917 GAATTCATTCAATTTACCAGTTGACTT 57.303 29.630 0.00 0.00 34.60 3.01
2688 4092 9.480053 AATTCATTCAATTTACCAGTTGACTTG 57.520 29.630 0.00 0.00 34.34 3.16
2689 4093 7.581213 TCATTCAATTTACCAGTTGACTTGT 57.419 32.000 0.00 0.00 34.34 3.16
2690 4094 7.648142 TCATTCAATTTACCAGTTGACTTGTC 58.352 34.615 0.00 0.00 34.34 3.18
2691 4095 5.666969 TCAATTTACCAGTTGACTTGTCG 57.333 39.130 0.00 0.00 29.93 4.35
2692 4096 5.361427 TCAATTTACCAGTTGACTTGTCGA 58.639 37.500 0.00 0.00 29.93 4.20
2693 4097 5.995282 TCAATTTACCAGTTGACTTGTCGAT 59.005 36.000 0.00 0.00 29.93 3.59
2694 4098 6.485313 TCAATTTACCAGTTGACTTGTCGATT 59.515 34.615 0.00 0.00 29.93 3.34
2695 4099 7.658167 TCAATTTACCAGTTGACTTGTCGATTA 59.342 33.333 0.00 0.00 29.93 1.75
2696 4100 7.972832 ATTTACCAGTTGACTTGTCGATTAA 57.027 32.000 0.00 0.00 0.00 1.40
2697 4101 7.972832 TTTACCAGTTGACTTGTCGATTAAT 57.027 32.000 0.00 0.00 0.00 1.40
2698 4102 7.591006 TTACCAGTTGACTTGTCGATTAATC 57.409 36.000 5.30 5.30 0.00 1.75
2699 4103 4.935808 ACCAGTTGACTTGTCGATTAATCC 59.064 41.667 9.87 0.00 0.00 3.01
2700 4104 4.332819 CCAGTTGACTTGTCGATTAATCCC 59.667 45.833 9.87 1.75 0.00 3.85
2701 4105 5.178797 CAGTTGACTTGTCGATTAATCCCT 58.821 41.667 9.87 0.00 0.00 4.20
2702 4106 6.338146 CAGTTGACTTGTCGATTAATCCCTA 58.662 40.000 9.87 0.00 0.00 3.53
2703 4107 6.255887 CAGTTGACTTGTCGATTAATCCCTAC 59.744 42.308 9.87 6.59 0.00 3.18
2704 4108 6.154706 AGTTGACTTGTCGATTAATCCCTACT 59.845 38.462 9.87 1.62 0.00 2.57
2705 4109 6.145338 TGACTTGTCGATTAATCCCTACTC 57.855 41.667 9.87 1.86 0.00 2.59
2706 4110 5.892119 TGACTTGTCGATTAATCCCTACTCT 59.108 40.000 9.87 0.00 0.00 3.24
2707 4111 7.058525 TGACTTGTCGATTAATCCCTACTCTA 58.941 38.462 9.87 0.00 0.00 2.43
2708 4112 7.558807 TGACTTGTCGATTAATCCCTACTCTAA 59.441 37.037 9.87 0.00 0.00 2.10
2709 4113 7.942990 ACTTGTCGATTAATCCCTACTCTAAG 58.057 38.462 9.87 8.01 0.00 2.18
2710 4114 6.896021 TGTCGATTAATCCCTACTCTAAGG 57.104 41.667 9.87 0.00 36.30 2.69
2711 4115 6.371278 TGTCGATTAATCCCTACTCTAAGGT 58.629 40.000 9.87 0.00 34.56 3.50
2712 4116 6.489361 TGTCGATTAATCCCTACTCTAAGGTC 59.511 42.308 9.87 0.00 34.56 3.85
2713 4117 6.489361 GTCGATTAATCCCTACTCTAAGGTCA 59.511 42.308 9.87 0.00 34.56 4.02
2714 4118 7.177041 GTCGATTAATCCCTACTCTAAGGTCAT 59.823 40.741 9.87 0.00 34.56 3.06
2715 4119 7.728981 TCGATTAATCCCTACTCTAAGGTCATT 59.271 37.037 9.87 0.00 34.56 2.57
2716 4120 7.815068 CGATTAATCCCTACTCTAAGGTCATTG 59.185 40.741 9.87 0.00 34.56 2.82
2717 4121 8.798975 ATTAATCCCTACTCTAAGGTCATTGA 57.201 34.615 0.00 0.00 34.56 2.57
2718 4122 8.618240 TTAATCCCTACTCTAAGGTCATTGAA 57.382 34.615 0.00 0.00 34.56 2.69
2719 4123 7.698163 AATCCCTACTCTAAGGTCATTGAAT 57.302 36.000 0.00 0.00 34.56 2.57
2720 4124 8.798975 AATCCCTACTCTAAGGTCATTGAATA 57.201 34.615 0.00 0.00 34.56 1.75
2721 4125 7.841282 TCCCTACTCTAAGGTCATTGAATAG 57.159 40.000 0.00 0.00 34.56 1.73
2722 4126 6.267928 TCCCTACTCTAAGGTCATTGAATAGC 59.732 42.308 0.00 0.00 34.56 2.97
2723 4127 6.459923 CCTACTCTAAGGTCATTGAATAGCC 58.540 44.000 0.00 0.00 31.46 3.93
2724 4128 4.950050 ACTCTAAGGTCATTGAATAGCCG 58.050 43.478 0.00 0.00 0.00 5.52
2725 4129 3.728845 TCTAAGGTCATTGAATAGCCGC 58.271 45.455 0.00 0.00 0.00 6.53
2726 4130 2.717639 AAGGTCATTGAATAGCCGCT 57.282 45.000 0.00 0.00 0.00 5.52
2727 4131 3.838244 AAGGTCATTGAATAGCCGCTA 57.162 42.857 1.73 1.73 0.00 4.26
2728 4132 3.838244 AGGTCATTGAATAGCCGCTAA 57.162 42.857 3.73 0.00 0.00 3.09
2729 4133 4.150897 AGGTCATTGAATAGCCGCTAAA 57.849 40.909 3.73 0.00 0.00 1.85
2730 4134 4.718961 AGGTCATTGAATAGCCGCTAAAT 58.281 39.130 3.73 0.00 0.00 1.40
2731 4135 5.133221 AGGTCATTGAATAGCCGCTAAATT 58.867 37.500 3.73 0.00 0.00 1.82
2732 4136 5.009010 AGGTCATTGAATAGCCGCTAAATTG 59.991 40.000 3.73 1.41 0.00 2.32
2733 4137 5.008613 GGTCATTGAATAGCCGCTAAATTGA 59.991 40.000 3.73 3.54 0.00 2.57
2734 4138 6.294176 GGTCATTGAATAGCCGCTAAATTGAT 60.294 38.462 3.73 0.00 0.00 2.57
2735 4139 7.094805 GGTCATTGAATAGCCGCTAAATTGATA 60.095 37.037 3.73 0.00 0.00 2.15
2736 4140 8.289618 GTCATTGAATAGCCGCTAAATTGATAA 58.710 33.333 3.73 0.00 0.00 1.75
2737 4141 8.845227 TCATTGAATAGCCGCTAAATTGATAAA 58.155 29.630 3.73 0.00 0.00 1.40
2738 4142 9.630098 CATTGAATAGCCGCTAAATTGATAAAT 57.370 29.630 3.73 0.00 0.00 1.40
2739 4143 9.630098 ATTGAATAGCCGCTAAATTGATAAATG 57.370 29.630 3.73 0.00 0.00 2.32
2740 4144 7.592938 TGAATAGCCGCTAAATTGATAAATGG 58.407 34.615 3.73 0.00 0.00 3.16
2741 4145 4.243007 AGCCGCTAAATTGATAAATGGC 57.757 40.909 0.00 0.00 40.22 4.40
2742 4146 3.005791 AGCCGCTAAATTGATAAATGGCC 59.994 43.478 0.00 0.00 40.80 5.36
2743 4147 3.564511 CCGCTAAATTGATAAATGGCCG 58.435 45.455 0.00 0.00 0.00 6.13
2744 4148 3.252215 CCGCTAAATTGATAAATGGCCGA 59.748 43.478 0.00 0.00 0.00 5.54
2745 4149 4.082787 CCGCTAAATTGATAAATGGCCGAT 60.083 41.667 0.00 0.00 0.00 4.18
2746 4150 5.460646 CGCTAAATTGATAAATGGCCGATT 58.539 37.500 0.00 0.00 0.00 3.34
2747 4151 6.348950 CCGCTAAATTGATAAATGGCCGATTA 60.349 38.462 0.00 0.00 0.00 1.75
2748 4152 6.742718 CGCTAAATTGATAAATGGCCGATTAG 59.257 38.462 0.00 0.00 0.00 1.73
2749 4153 6.528072 GCTAAATTGATAAATGGCCGATTAGC 59.472 38.462 8.27 8.27 0.00 3.09
2750 4154 6.403866 AAATTGATAAATGGCCGATTAGCA 57.596 33.333 12.65 12.65 0.00 3.49
2751 4155 6.594788 AATTGATAAATGGCCGATTAGCAT 57.405 33.333 16.15 3.37 28.70 3.79
2752 4156 7.701539 AATTGATAAATGGCCGATTAGCATA 57.298 32.000 16.15 9.62 28.70 3.14
2753 4157 7.886629 ATTGATAAATGGCCGATTAGCATAT 57.113 32.000 16.15 10.99 28.70 1.78
2754 4158 7.701539 TTGATAAATGGCCGATTAGCATATT 57.298 32.000 16.15 0.00 28.70 1.28
2755 4159 8.800370 TTGATAAATGGCCGATTAGCATATTA 57.200 30.769 16.15 2.49 28.70 0.98
2756 4160 8.800370 TGATAAATGGCCGATTAGCATATTAA 57.200 30.769 12.65 0.00 0.00 1.40
2757 4161 8.673711 TGATAAATGGCCGATTAGCATATTAAC 58.326 33.333 12.65 0.00 0.00 2.01
2758 4162 5.897377 AATGGCCGATTAGCATATTAACC 57.103 39.130 0.00 0.00 0.00 2.85
2759 4163 3.681593 TGGCCGATTAGCATATTAACCC 58.318 45.455 0.00 0.00 0.00 4.11
2760 4164 3.329520 TGGCCGATTAGCATATTAACCCT 59.670 43.478 0.00 0.00 0.00 4.34
2761 4165 3.939592 GGCCGATTAGCATATTAACCCTC 59.060 47.826 0.00 0.00 0.00 4.30
2762 4166 4.323562 GGCCGATTAGCATATTAACCCTCT 60.324 45.833 0.00 0.00 0.00 3.69
2763 4167 5.105064 GGCCGATTAGCATATTAACCCTCTA 60.105 44.000 0.00 0.00 0.00 2.43
2764 4168 5.811100 GCCGATTAGCATATTAACCCTCTAC 59.189 44.000 0.00 0.00 0.00 2.59
2765 4169 6.351117 GCCGATTAGCATATTAACCCTCTACT 60.351 42.308 0.00 0.00 0.00 2.57
2766 4170 7.259161 CCGATTAGCATATTAACCCTCTACTC 58.741 42.308 0.00 0.00 0.00 2.59
2767 4171 6.967767 CGATTAGCATATTAACCCTCTACTCG 59.032 42.308 0.00 0.00 0.00 4.18
2768 4172 4.522722 AGCATATTAACCCTCTACTCGC 57.477 45.455 0.00 0.00 0.00 5.03
2960 4365 3.738982 CATGCCTCAATACGATTACCCA 58.261 45.455 0.00 0.00 0.00 4.51
2984 4389 6.959639 TTTCTTTTCTTGCACTTAGTCCAT 57.040 33.333 0.00 0.00 0.00 3.41
2998 4403 8.034804 GCACTTAGTCCATTTTCATTAATTGGT 58.965 33.333 3.60 0.00 38.09 3.67
3034 4439 7.721842 TGACTAGGTTTGTTGTTCCAATCAATA 59.278 33.333 0.00 0.00 0.00 1.90
3196 4602 5.795972 TCAGGTATCCAAAACGTATCACAA 58.204 37.500 0.00 0.00 0.00 3.33
3220 4626 9.667107 CAAAAGTATCCTAGGAGTATCAAACAA 57.333 33.333 18.34 0.00 36.25 2.83
3287 4704 1.244816 CGTATCAGGGCAGTATCCGA 58.755 55.000 0.00 0.00 0.00 4.55
3288 4705 1.819288 CGTATCAGGGCAGTATCCGAT 59.181 52.381 0.00 0.00 0.00 4.18
3315 4732 6.089150 GGATACGCGTACTTTCTGAAATATCC 59.911 42.308 23.19 16.37 0.00 2.59
3316 4733 3.795101 ACGCGTACTTTCTGAAATATCCG 59.205 43.478 11.67 5.50 0.00 4.18
3317 4734 3.361724 CGCGTACTTTCTGAAATATCCGC 60.362 47.826 18.31 18.31 0.00 5.54
3327 4744 0.580104 AAATATCCGCGCAACGTAGC 59.420 50.000 8.75 0.00 41.42 3.58
3328 4745 0.249322 AATATCCGCGCAACGTAGCT 60.249 50.000 8.75 0.00 41.42 3.32
3329 4746 0.663568 ATATCCGCGCAACGTAGCTC 60.664 55.000 8.75 0.00 41.42 4.09
3330 4747 2.976881 TATCCGCGCAACGTAGCTCG 62.977 60.000 8.75 0.00 41.92 5.03
3334 4751 3.545481 CGCAACGTAGCTCGCCAG 61.545 66.667 0.00 0.00 44.19 4.85
3343 4760 2.512515 GCTCGCCAGCCAACCTAG 60.513 66.667 0.00 0.00 40.14 3.02
3344 4761 2.512515 CTCGCCAGCCAACCTAGC 60.513 66.667 0.00 0.00 0.00 3.42
3345 4762 3.315142 CTCGCCAGCCAACCTAGCA 62.315 63.158 0.00 0.00 0.00 3.49
3346 4763 2.821366 CGCCAGCCAACCTAGCAG 60.821 66.667 0.00 0.00 0.00 4.24
3347 4764 3.136791 GCCAGCCAACCTAGCAGC 61.137 66.667 0.00 0.00 0.00 5.25
3348 4765 2.673523 CCAGCCAACCTAGCAGCT 59.326 61.111 0.00 0.00 35.52 4.24
3349 4766 1.907739 CCAGCCAACCTAGCAGCTA 59.092 57.895 1.13 1.13 33.33 3.32
3350 4767 0.462759 CCAGCCAACCTAGCAGCTAC 60.463 60.000 0.00 0.00 33.33 3.58
3351 4768 0.462759 CAGCCAACCTAGCAGCTACC 60.463 60.000 0.00 0.00 33.33 3.18
3352 4769 0.909610 AGCCAACCTAGCAGCTACCA 60.910 55.000 0.00 0.00 32.73 3.25
3353 4770 0.462759 GCCAACCTAGCAGCTACCAG 60.463 60.000 0.00 0.00 0.00 4.00
3354 4771 0.462759 CCAACCTAGCAGCTACCAGC 60.463 60.000 0.00 0.00 42.84 4.85
3370 4787 7.602517 GCTACCAGCTATCGATTTATTCAAT 57.397 36.000 1.71 0.00 38.45 2.57
3371 4788 8.703604 GCTACCAGCTATCGATTTATTCAATA 57.296 34.615 1.71 0.00 38.45 1.90
3372 4789 9.151471 GCTACCAGCTATCGATTTATTCAATAA 57.849 33.333 1.71 0.00 38.45 1.40
3375 4792 8.873830 ACCAGCTATCGATTTATTCAATAATCG 58.126 33.333 1.71 10.09 32.35 3.34
3376 4793 8.873830 CCAGCTATCGATTTATTCAATAATCGT 58.126 33.333 1.71 7.11 32.64 3.73
3379 4796 8.989767 GCTATCGATTTATTCAATAATCGTTGC 58.010 33.333 1.71 13.00 32.64 4.17
3382 4799 8.766493 TCGATTTATTCAATAATCGTTGCAAG 57.234 30.769 0.00 0.00 32.64 4.01
3383 4800 8.394877 TCGATTTATTCAATAATCGTTGCAAGT 58.605 29.630 0.00 0.00 32.64 3.16
3384 4801 8.463709 CGATTTATTCAATAATCGTTGCAAGTG 58.536 33.333 0.00 0.00 0.00 3.16
3385 4802 7.504922 TTTATTCAATAATCGTTGCAAGTGC 57.495 32.000 0.00 0.00 42.50 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 2.433838 CAGCTGGTGCAGGACTCG 60.434 66.667 5.57 0.00 42.74 4.18
162 166 1.657594 CAGATGTCGTAGCAGCAACAG 59.342 52.381 0.00 0.00 0.00 3.16
163 167 1.000843 ACAGATGTCGTAGCAGCAACA 59.999 47.619 0.00 0.00 0.00 3.33
164 168 1.656095 GACAGATGTCGTAGCAGCAAC 59.344 52.381 0.00 0.00 35.12 4.17
165 169 1.996292 GACAGATGTCGTAGCAGCAA 58.004 50.000 0.00 0.00 35.12 3.91
166 170 3.721625 GACAGATGTCGTAGCAGCA 57.278 52.632 0.00 0.00 35.12 4.41
175 179 3.256879 TCAGAGTGGTTCAGACAGATGTC 59.743 47.826 4.77 4.77 45.08 3.06
176 180 3.234353 TCAGAGTGGTTCAGACAGATGT 58.766 45.455 0.00 0.00 0.00 3.06
177 181 3.949842 TCAGAGTGGTTCAGACAGATG 57.050 47.619 0.00 0.00 0.00 2.90
178 182 4.963318 TTTCAGAGTGGTTCAGACAGAT 57.037 40.909 0.00 0.00 0.00 2.90
179 183 4.963318 ATTTCAGAGTGGTTCAGACAGA 57.037 40.909 0.00 0.00 0.00 3.41
180 184 6.382869 AAAATTTCAGAGTGGTTCAGACAG 57.617 37.500 0.00 0.00 0.00 3.51
181 185 7.279615 TCTAAAATTTCAGAGTGGTTCAGACA 58.720 34.615 0.00 0.00 0.00 3.41
182 186 7.572168 GCTCTAAAATTTCAGAGTGGTTCAGAC 60.572 40.741 17.84 0.00 40.40 3.51
183 187 6.428159 GCTCTAAAATTTCAGAGTGGTTCAGA 59.572 38.462 17.84 0.00 40.40 3.27
220 246 7.058693 GTGGTTCGTTATTGTTCGTGTAAATTC 59.941 37.037 0.00 0.00 0.00 2.17
281 313 6.199154 AGCTTCAGATATCGTTCGTGTTATTG 59.801 38.462 0.00 0.00 0.00 1.90
282 314 6.273825 AGCTTCAGATATCGTTCGTGTTATT 58.726 36.000 0.00 0.00 0.00 1.40
283 315 5.833082 AGCTTCAGATATCGTTCGTGTTAT 58.167 37.500 0.00 0.00 0.00 1.89
284 316 5.066117 AGAGCTTCAGATATCGTTCGTGTTA 59.934 40.000 0.00 0.00 0.00 2.41
334 367 3.327464 TCAGATCCACAGATTTGGTCACA 59.673 43.478 0.00 0.00 35.73 3.58
336 369 4.225717 TCATCAGATCCACAGATTTGGTCA 59.774 41.667 0.00 0.00 35.73 4.02
337 370 4.774124 TCATCAGATCCACAGATTTGGTC 58.226 43.478 0.00 0.00 35.73 4.02
392 425 3.430098 GGACAGTCAGCTCACCTATTCTG 60.430 52.174 2.17 0.00 0.00 3.02
400 433 0.320247 CAGTGGGACAGTCAGCTCAC 60.320 60.000 2.17 5.35 41.96 3.51
404 437 1.277557 AGAATCAGTGGGACAGTCAGC 59.722 52.381 2.17 0.00 41.96 4.26
413 446 2.547211 GCATTCGATCAGAATCAGTGGG 59.453 50.000 9.03 1.46 45.95 4.61
427 460 2.889154 ATCTGCGCGAGTGCATTCGA 62.889 55.000 32.41 13.57 45.26 3.71
441 474 2.020559 CGCGCGTGAGAAATCTGC 59.979 61.111 24.19 0.00 0.00 4.26
442 475 0.517132 CAACGCGCGTGAGAAATCTG 60.517 55.000 38.44 23.86 0.00 2.90
478 511 1.270274 TGCGTAACTAAACTCCAGCGA 59.730 47.619 0.00 0.00 0.00 4.93
479 512 1.705256 TGCGTAACTAAACTCCAGCG 58.295 50.000 0.00 0.00 0.00 5.18
480 513 3.064931 ACTTGCGTAACTAAACTCCAGC 58.935 45.455 0.00 0.00 0.00 4.85
481 514 4.510340 ACAACTTGCGTAACTAAACTCCAG 59.490 41.667 0.00 0.00 0.00 3.86
482 515 4.444536 ACAACTTGCGTAACTAAACTCCA 58.555 39.130 0.00 0.00 0.00 3.86
483 516 5.922544 TCTACAACTTGCGTAACTAAACTCC 59.077 40.000 0.00 0.00 0.00 3.85
490 523 9.216117 AGATTTAAATCTACAACTTGCGTAACT 57.784 29.630 25.81 0.00 43.66 2.24
520 554 5.957716 TGGTGACACCGATTCCTTCGAAC 62.958 52.174 19.67 0.00 43.21 3.95
554 588 2.023882 GGACGGCGTAGTACGAGC 59.976 66.667 26.29 9.17 46.05 5.03
570 637 0.678950 AAGCAAACCAACGGAATGGG 59.321 50.000 8.71 0.00 45.18 4.00
583 650 1.407258 CCCACAAGAAACCGAAGCAAA 59.593 47.619 0.00 0.00 0.00 3.68
705 1961 5.354234 TCAGAACTCCTTTTGAACAAGTGAC 59.646 40.000 0.00 0.00 0.00 3.67
719 1975 1.280421 GGCCATGTCTTCAGAACTCCT 59.720 52.381 0.00 0.00 0.00 3.69
758 2014 6.414732 TGGTATGAAATCACTGTTTCTAGGG 58.585 40.000 0.00 0.00 38.58 3.53
763 2019 7.592938 TCACAATGGTATGAAATCACTGTTTC 58.407 34.615 0.00 0.00 38.32 2.78
888 2144 7.863666 ACGATGAAAATTAAGACCGTGTTTAA 58.136 30.769 0.00 0.00 0.00 1.52
899 2155 3.474961 CGCGAGCAACGATGAAAATTAAG 59.525 43.478 0.00 0.00 45.77 1.85
946 2205 7.484975 AGTTCACGATAAACTCCTAGAGATTG 58.515 38.462 0.00 0.00 31.36 2.67
1005 2264 4.876081 GCTCTGAATTGCGCGGCG 62.876 66.667 19.62 19.62 0.00 6.46
1032 2291 3.202818 TGGTACCATGGCAGATGAAGATT 59.797 43.478 11.60 0.00 0.00 2.40
1060 2320 0.902516 AGAGAGAGTGGGGAGTGCAC 60.903 60.000 9.40 9.40 0.00 4.57
1062 2322 1.960689 GATAGAGAGAGTGGGGAGTGC 59.039 57.143 0.00 0.00 0.00 4.40
1063 2323 3.138283 AGAGATAGAGAGAGTGGGGAGTG 59.862 52.174 0.00 0.00 0.00 3.51
1064 2324 3.138283 CAGAGATAGAGAGAGTGGGGAGT 59.862 52.174 0.00 0.00 0.00 3.85
1065 2325 3.754965 CAGAGATAGAGAGAGTGGGGAG 58.245 54.545 0.00 0.00 0.00 4.30
1066 2326 2.158534 GCAGAGATAGAGAGAGTGGGGA 60.159 54.545 0.00 0.00 0.00 4.81
1067 2327 2.158475 AGCAGAGATAGAGAGAGTGGGG 60.158 54.545 0.00 0.00 0.00 4.96
1325 2684 2.886523 CCCGGTGTATATAGTTCGTCCA 59.113 50.000 0.00 0.00 0.00 4.02
1331 2690 2.767394 TGTGTGCCCGGTGTATATAGTT 59.233 45.455 0.00 0.00 0.00 2.24
1332 2691 2.390696 TGTGTGCCCGGTGTATATAGT 58.609 47.619 0.00 0.00 0.00 2.12
1333 2692 3.462483 TTGTGTGCCCGGTGTATATAG 57.538 47.619 0.00 0.00 0.00 1.31
1334 2693 3.198200 AGTTTGTGTGCCCGGTGTATATA 59.802 43.478 0.00 0.00 0.00 0.86
1336 2695 1.348366 AGTTTGTGTGCCCGGTGTATA 59.652 47.619 0.00 0.00 0.00 1.47
1337 2696 0.109723 AGTTTGTGTGCCCGGTGTAT 59.890 50.000 0.00 0.00 0.00 2.29
1338 2697 0.816018 CAGTTTGTGTGCCCGGTGTA 60.816 55.000 0.00 0.00 0.00 2.90
1340 2699 1.380403 TTCAGTTTGTGTGCCCGGTG 61.380 55.000 0.00 0.00 0.00 4.94
1341 2700 0.681564 TTTCAGTTTGTGTGCCCGGT 60.682 50.000 0.00 0.00 0.00 5.28
1347 2710 5.525012 TCAGAGATCAGTTTCAGTTTGTGTG 59.475 40.000 0.00 0.00 0.00 3.82
1361 2724 1.938577 CGCCACCAATTCAGAGATCAG 59.061 52.381 0.00 0.00 0.00 2.90
1365 2735 0.976641 AGACGCCACCAATTCAGAGA 59.023 50.000 0.00 0.00 0.00 3.10
1375 2745 0.521735 GAAATTGGTCAGACGCCACC 59.478 55.000 0.00 0.00 35.46 4.61
1571 2941 5.858581 GTGTTGCATTGAGAAGTCAAATACC 59.141 40.000 0.00 0.00 45.88 2.73
1575 2945 3.243035 CCGTGTTGCATTGAGAAGTCAAA 60.243 43.478 0.00 0.00 45.88 2.69
1576 2946 2.290367 CCGTGTTGCATTGAGAAGTCAA 59.710 45.455 0.00 0.00 46.81 3.18
1601 2971 3.730715 CACAAAAATCACCACGAAAGCTC 59.269 43.478 0.00 0.00 0.00 4.09
1602 2972 3.130340 ACACAAAAATCACCACGAAAGCT 59.870 39.130 0.00 0.00 0.00 3.74
1603 2973 3.242712 CACACAAAAATCACCACGAAAGC 59.757 43.478 0.00 0.00 0.00 3.51
1604 2974 3.242712 GCACACAAAAATCACCACGAAAG 59.757 43.478 0.00 0.00 0.00 2.62
1730 3103 1.420430 GTATGATCCTCCAACCGGGA 58.580 55.000 6.32 0.00 45.89 5.14
1772 3145 5.882557 TCTTATCTCTGGATCTTTGCAAACC 59.117 40.000 8.05 9.07 33.71 3.27
1775 3148 8.408043 TTTTTCTTATCTCTGGATCTTTGCAA 57.592 30.769 0.00 0.00 33.71 4.08
1800 3173 5.443283 TGAGTACATATGACCGAGTACCTT 58.557 41.667 10.38 0.00 38.01 3.50
1827 3200 7.442969 TCTTCCAGTCGTTAAGAGCATTAAAAA 59.557 33.333 0.00 0.00 0.00 1.94
1834 3210 4.056050 GTTTCTTCCAGTCGTTAAGAGCA 58.944 43.478 0.00 0.00 31.30 4.26
1856 3232 3.666902 CGTAGGAAAATTCAGCAACACCG 60.667 47.826 0.00 0.00 0.00 4.94
1873 3263 3.059461 ACGCAAATACACAAACACGTAGG 60.059 43.478 0.00 0.00 0.00 3.18
1874 3264 3.897778 CACGCAAATACACAAACACGTAG 59.102 43.478 0.00 0.00 0.00 3.51
1875 3265 3.845303 GCACGCAAATACACAAACACGTA 60.845 43.478 0.00 0.00 0.00 3.57
1876 3266 2.710760 CACGCAAATACACAAACACGT 58.289 42.857 0.00 0.00 0.00 4.49
1877 3267 1.446465 GCACGCAAATACACAAACACG 59.554 47.619 0.00 0.00 0.00 4.49
1879 3269 2.542618 CCTGCACGCAAATACACAAACA 60.543 45.455 0.00 0.00 0.00 2.83
1880 3270 2.050691 CCTGCACGCAAATACACAAAC 58.949 47.619 0.00 0.00 0.00 2.93
1881 3271 1.678627 ACCTGCACGCAAATACACAAA 59.321 42.857 0.00 0.00 0.00 2.83
1882 3272 1.313772 ACCTGCACGCAAATACACAA 58.686 45.000 0.00 0.00 0.00 3.33
1883 3273 1.265635 GAACCTGCACGCAAATACACA 59.734 47.619 0.00 0.00 0.00 3.72
1884 3274 1.724654 CGAACCTGCACGCAAATACAC 60.725 52.381 0.00 0.00 0.00 2.90
1885 3275 0.515127 CGAACCTGCACGCAAATACA 59.485 50.000 0.00 0.00 0.00 2.29
1908 3298 6.489022 GCTTTCCCCTGTAAATATACGGATTT 59.511 38.462 0.00 0.00 40.28 2.17
1990 3380 1.115467 AGGGAGATTACCTCGTGCAG 58.885 55.000 0.00 0.00 42.89 4.41
2025 3415 4.677584 CAGACTGGGAGAGAAATTAGACG 58.322 47.826 0.00 0.00 0.00 4.18
2041 3431 1.077930 CCATGAGGTGGGCAGACTG 60.078 63.158 0.00 0.00 44.79 3.51
2088 3478 1.909302 TCTGTCTTTCTCCATGGACCC 59.091 52.381 11.44 0.00 0.00 4.46
2092 3490 3.055240 AGCTTCTCTGTCTTTCTCCATGG 60.055 47.826 4.97 4.97 0.00 3.66
2361 3759 1.556564 CCGTGCCAGTATTCACTACG 58.443 55.000 0.00 0.00 35.16 3.51
2366 3764 1.305219 GCTTGCCGTGCCAGTATTCA 61.305 55.000 0.35 0.00 0.00 2.57
2486 3884 4.661222 TCTGGATTATGCAACCTTTCACA 58.339 39.130 0.00 0.00 0.00 3.58
2487 3885 5.126061 ACATCTGGATTATGCAACCTTTCAC 59.874 40.000 0.00 0.00 0.00 3.18
2492 3890 4.240881 ACACATCTGGATTATGCAACCT 57.759 40.909 0.00 0.00 0.00 3.50
2493 3891 4.989279 AACACATCTGGATTATGCAACC 57.011 40.909 0.00 0.00 0.00 3.77
2538 3942 7.494298 ACACATTTTCAATACCTTGGTTTTCAC 59.506 33.333 0.00 0.00 32.95 3.18
2551 3955 5.888691 ACCGCATACACACATTTTCAATA 57.111 34.783 0.00 0.00 0.00 1.90
2565 3969 1.664151 GTAGAAGTGGCAACCGCATAC 59.336 52.381 0.00 0.00 41.24 2.39
2566 3970 1.553248 AGTAGAAGTGGCAACCGCATA 59.447 47.619 0.00 0.00 41.24 3.14
2567 3971 0.324943 AGTAGAAGTGGCAACCGCAT 59.675 50.000 0.00 0.00 41.24 4.73
2568 3972 0.602638 CAGTAGAAGTGGCAACCGCA 60.603 55.000 0.00 0.00 41.24 5.69
2569 3973 1.298859 CCAGTAGAAGTGGCAACCGC 61.299 60.000 0.00 0.00 30.92 5.68
2570 3974 0.034896 ACCAGTAGAAGTGGCAACCG 59.965 55.000 0.56 0.00 42.53 4.44
2571 3975 3.270877 CATACCAGTAGAAGTGGCAACC 58.729 50.000 0.56 0.00 42.53 3.77
2572 3976 2.678336 GCATACCAGTAGAAGTGGCAAC 59.322 50.000 0.56 0.00 42.53 4.17
2573 3977 2.304470 TGCATACCAGTAGAAGTGGCAA 59.696 45.455 0.56 0.00 42.53 4.52
2574 3978 1.905894 TGCATACCAGTAGAAGTGGCA 59.094 47.619 0.56 0.00 42.53 4.92
2575 3979 2.555199 CTGCATACCAGTAGAAGTGGC 58.445 52.381 0.56 0.00 42.53 5.01
2576 3980 2.169352 AGCTGCATACCAGTAGAAGTGG 59.831 50.000 1.02 0.00 44.34 4.00
2577 3981 3.131933 AGAGCTGCATACCAGTAGAAGTG 59.868 47.826 1.02 0.00 43.71 3.16
2578 3982 3.131933 CAGAGCTGCATACCAGTAGAAGT 59.868 47.826 1.02 0.00 43.71 3.01
2579 3983 3.382865 TCAGAGCTGCATACCAGTAGAAG 59.617 47.826 1.02 0.00 43.71 2.85
2580 3984 3.131223 GTCAGAGCTGCATACCAGTAGAA 59.869 47.826 1.02 0.00 43.71 2.10
2581 3985 2.690497 GTCAGAGCTGCATACCAGTAGA 59.310 50.000 1.02 0.00 43.71 2.59
2582 3986 2.223923 GGTCAGAGCTGCATACCAGTAG 60.224 54.545 1.02 0.00 43.71 2.57
2583 3987 1.757118 GGTCAGAGCTGCATACCAGTA 59.243 52.381 1.02 0.00 43.71 2.74
2584 3988 0.539051 GGTCAGAGCTGCATACCAGT 59.461 55.000 1.02 0.00 43.71 4.00
2585 3989 0.179062 GGGTCAGAGCTGCATACCAG 60.179 60.000 1.02 0.00 44.67 4.00
2586 3990 0.618680 AGGGTCAGAGCTGCATACCA 60.619 55.000 1.02 0.00 29.45 3.25
2587 3991 1.342819 CTAGGGTCAGAGCTGCATACC 59.657 57.143 1.02 3.34 0.00 2.73
2588 3992 2.035632 ACTAGGGTCAGAGCTGCATAC 58.964 52.381 1.02 0.00 0.00 2.39
2589 3993 2.432146 CAACTAGGGTCAGAGCTGCATA 59.568 50.000 1.02 0.00 0.00 3.14
2590 3994 1.209019 CAACTAGGGTCAGAGCTGCAT 59.791 52.381 1.02 0.00 0.00 3.96
2591 3995 0.610174 CAACTAGGGTCAGAGCTGCA 59.390 55.000 1.02 0.00 0.00 4.41
2592 3996 0.610687 ACAACTAGGGTCAGAGCTGC 59.389 55.000 0.00 0.00 0.00 5.25
2593 3997 1.620819 ACACAACTAGGGTCAGAGCTG 59.379 52.381 0.00 0.00 0.00 4.24
2594 3998 2.016905 ACACAACTAGGGTCAGAGCT 57.983 50.000 0.00 0.00 0.00 4.09
2595 3999 3.430929 CCATACACAACTAGGGTCAGAGC 60.431 52.174 0.00 0.00 34.16 4.09
2596 4000 3.430929 GCCATACACAACTAGGGTCAGAG 60.431 52.174 0.00 0.00 34.16 3.35
2597 4001 2.500098 GCCATACACAACTAGGGTCAGA 59.500 50.000 0.00 0.00 34.16 3.27
2598 4002 2.236146 TGCCATACACAACTAGGGTCAG 59.764 50.000 0.00 0.00 34.16 3.51
2599 4003 2.261729 TGCCATACACAACTAGGGTCA 58.738 47.619 0.00 0.00 34.16 4.02
2600 4004 3.560636 ATGCCATACACAACTAGGGTC 57.439 47.619 0.00 0.00 34.16 4.46
2601 4005 3.523564 AGAATGCCATACACAACTAGGGT 59.476 43.478 0.00 0.00 37.77 4.34
2602 4006 4.130118 GAGAATGCCATACACAACTAGGG 58.870 47.826 0.00 0.00 0.00 3.53
2603 4007 4.130118 GGAGAATGCCATACACAACTAGG 58.870 47.826 0.00 0.00 0.00 3.02
2604 4008 4.769688 TGGAGAATGCCATACACAACTAG 58.230 43.478 0.00 0.00 31.66 2.57
2605 4009 4.225042 ACTGGAGAATGCCATACACAACTA 59.775 41.667 0.00 0.00 37.30 2.24
2606 4010 3.009473 ACTGGAGAATGCCATACACAACT 59.991 43.478 0.00 0.00 37.30 3.16
2607 4011 3.127548 CACTGGAGAATGCCATACACAAC 59.872 47.826 0.00 0.00 37.30 3.32
2608 4012 3.346315 CACTGGAGAATGCCATACACAA 58.654 45.455 0.00 0.00 37.30 3.33
2609 4013 2.356022 CCACTGGAGAATGCCATACACA 60.356 50.000 0.00 0.00 37.30 3.72
2610 4014 2.292267 CCACTGGAGAATGCCATACAC 58.708 52.381 0.00 0.00 37.30 2.90
2611 4015 1.408683 GCCACTGGAGAATGCCATACA 60.409 52.381 0.00 0.00 37.30 2.29
2612 4016 1.312815 GCCACTGGAGAATGCCATAC 58.687 55.000 0.00 0.00 37.30 2.39
2613 4017 0.918258 TGCCACTGGAGAATGCCATA 59.082 50.000 0.00 0.00 37.30 2.74
2614 4018 0.040058 TTGCCACTGGAGAATGCCAT 59.960 50.000 0.00 0.00 37.30 4.40
2615 4019 0.178967 TTTGCCACTGGAGAATGCCA 60.179 50.000 0.00 0.00 36.30 4.92
2616 4020 0.968405 TTTTGCCACTGGAGAATGCC 59.032 50.000 0.00 0.00 0.00 4.40
2617 4021 2.036346 AGTTTTTGCCACTGGAGAATGC 59.964 45.455 0.00 0.00 0.00 3.56
2618 4022 5.649782 ATAGTTTTTGCCACTGGAGAATG 57.350 39.130 0.00 0.00 0.00 2.67
2619 4023 7.397192 ACATTATAGTTTTTGCCACTGGAGAAT 59.603 33.333 0.00 0.00 0.00 2.40
2620 4024 6.719370 ACATTATAGTTTTTGCCACTGGAGAA 59.281 34.615 0.00 0.00 0.00 2.87
2621 4025 6.150976 CACATTATAGTTTTTGCCACTGGAGA 59.849 38.462 0.00 0.00 0.00 3.71
2622 4026 6.071952 ACACATTATAGTTTTTGCCACTGGAG 60.072 38.462 0.00 0.00 0.00 3.86
2623 4027 5.772672 ACACATTATAGTTTTTGCCACTGGA 59.227 36.000 0.00 0.00 0.00 3.86
2624 4028 6.024552 ACACATTATAGTTTTTGCCACTGG 57.975 37.500 0.00 0.00 0.00 4.00
2625 4029 6.586082 GGAACACATTATAGTTTTTGCCACTG 59.414 38.462 0.00 0.00 0.00 3.66
2626 4030 6.266558 TGGAACACATTATAGTTTTTGCCACT 59.733 34.615 0.00 0.00 0.00 4.00
2627 4031 6.451393 TGGAACACATTATAGTTTTTGCCAC 58.549 36.000 0.00 0.00 0.00 5.01
2628 4032 6.656632 TGGAACACATTATAGTTTTTGCCA 57.343 33.333 0.00 0.00 0.00 4.92
2645 4049 6.731876 GAATGAATTCTTGAACGTGTGGAACA 60.732 38.462 7.05 0.00 37.99 3.18
2646 4050 4.545823 TGAATTCTTGAACGTGTGGAAC 57.454 40.909 7.05 0.00 37.35 3.62
2647 4051 5.298026 TGAATGAATTCTTGAACGTGTGGAA 59.702 36.000 7.05 0.00 37.67 3.53
2648 4052 4.819088 TGAATGAATTCTTGAACGTGTGGA 59.181 37.500 7.05 0.00 37.67 4.02
2649 4053 5.107109 TGAATGAATTCTTGAACGTGTGG 57.893 39.130 7.05 0.00 37.67 4.17
2650 4054 7.627585 AATTGAATGAATTCTTGAACGTGTG 57.372 32.000 7.05 0.00 37.67 3.82
2651 4055 9.180678 GTAAATTGAATGAATTCTTGAACGTGT 57.819 29.630 7.05 0.00 37.67 4.49
2652 4056 8.638565 GGTAAATTGAATGAATTCTTGAACGTG 58.361 33.333 7.05 0.00 37.67 4.49
2653 4057 8.356657 TGGTAAATTGAATGAATTCTTGAACGT 58.643 29.630 7.05 0.00 37.67 3.99
2654 4058 8.741101 TGGTAAATTGAATGAATTCTTGAACG 57.259 30.769 7.05 0.00 37.67 3.95
2655 4059 9.696917 ACTGGTAAATTGAATGAATTCTTGAAC 57.303 29.630 7.05 0.00 37.67 3.18
2657 4061 9.695526 CAACTGGTAAATTGAATGAATTCTTGA 57.304 29.630 7.05 0.00 37.67 3.02
2658 4062 9.695526 TCAACTGGTAAATTGAATGAATTCTTG 57.304 29.630 7.05 0.00 37.67 3.02
2659 4063 9.696917 GTCAACTGGTAAATTGAATGAATTCTT 57.303 29.630 7.05 0.00 36.62 2.52
2660 4064 9.082313 AGTCAACTGGTAAATTGAATGAATTCT 57.918 29.630 7.05 0.00 36.62 2.40
2661 4065 9.696917 AAGTCAACTGGTAAATTGAATGAATTC 57.303 29.630 0.00 0.00 36.62 2.17
2662 4066 9.480053 CAAGTCAACTGGTAAATTGAATGAATT 57.520 29.630 0.00 0.00 36.62 2.17
2663 4067 8.641541 ACAAGTCAACTGGTAAATTGAATGAAT 58.358 29.630 0.00 0.00 36.62 2.57
2664 4068 8.006298 ACAAGTCAACTGGTAAATTGAATGAA 57.994 30.769 0.00 0.00 36.62 2.57
2665 4069 7.519809 CGACAAGTCAACTGGTAAATTGAATGA 60.520 37.037 0.72 0.00 36.62 2.57
2666 4070 6.578545 CGACAAGTCAACTGGTAAATTGAATG 59.421 38.462 0.72 0.00 36.62 2.67
2667 4071 6.485313 TCGACAAGTCAACTGGTAAATTGAAT 59.515 34.615 0.72 0.00 36.62 2.57
2668 4072 5.818336 TCGACAAGTCAACTGGTAAATTGAA 59.182 36.000 0.72 0.00 36.62 2.69
2669 4073 5.361427 TCGACAAGTCAACTGGTAAATTGA 58.639 37.500 0.72 0.00 28.24 2.57
2670 4074 5.666969 TCGACAAGTCAACTGGTAAATTG 57.333 39.130 0.72 0.00 28.24 2.32
2671 4075 6.877611 AATCGACAAGTCAACTGGTAAATT 57.122 33.333 0.72 0.00 28.24 1.82
2672 4076 7.972832 TTAATCGACAAGTCAACTGGTAAAT 57.027 32.000 0.72 0.00 28.24 1.40
2673 4077 7.118680 GGATTAATCGACAAGTCAACTGGTAAA 59.881 37.037 9.32 0.00 28.24 2.01
2674 4078 6.592607 GGATTAATCGACAAGTCAACTGGTAA 59.407 38.462 9.32 0.00 28.24 2.85
2675 4079 6.103997 GGATTAATCGACAAGTCAACTGGTA 58.896 40.000 9.32 0.00 28.24 3.25
2676 4080 4.935808 GGATTAATCGACAAGTCAACTGGT 59.064 41.667 9.32 0.00 31.49 4.00
2677 4081 4.332819 GGGATTAATCGACAAGTCAACTGG 59.667 45.833 9.32 0.00 0.00 4.00
2678 4082 5.178797 AGGGATTAATCGACAAGTCAACTG 58.821 41.667 9.32 0.00 0.00 3.16
2679 4083 5.422214 AGGGATTAATCGACAAGTCAACT 57.578 39.130 9.32 0.00 0.00 3.16
2680 4084 6.338937 AGTAGGGATTAATCGACAAGTCAAC 58.661 40.000 9.32 0.00 0.00 3.18
2681 4085 6.380274 AGAGTAGGGATTAATCGACAAGTCAA 59.620 38.462 9.32 0.00 31.78 3.18
2682 4086 5.892119 AGAGTAGGGATTAATCGACAAGTCA 59.108 40.000 9.32 0.00 31.78 3.41
2683 4087 6.394025 AGAGTAGGGATTAATCGACAAGTC 57.606 41.667 9.32 7.23 31.78 3.01
2684 4088 7.014422 CCTTAGAGTAGGGATTAATCGACAAGT 59.986 40.741 9.32 0.00 31.78 3.16
2685 4089 7.014422 ACCTTAGAGTAGGGATTAATCGACAAG 59.986 40.741 9.32 7.15 39.76 3.16
2686 4090 6.837568 ACCTTAGAGTAGGGATTAATCGACAA 59.162 38.462 9.32 0.00 39.76 3.18
2687 4091 6.371278 ACCTTAGAGTAGGGATTAATCGACA 58.629 40.000 9.32 0.00 39.76 4.35
2688 4092 6.489361 TGACCTTAGAGTAGGGATTAATCGAC 59.511 42.308 9.32 7.38 39.76 4.20
2689 4093 6.607970 TGACCTTAGAGTAGGGATTAATCGA 58.392 40.000 9.32 0.00 39.76 3.59
2690 4094 6.896021 TGACCTTAGAGTAGGGATTAATCG 57.104 41.667 9.32 0.00 39.76 3.34
2691 4095 8.871125 TCAATGACCTTAGAGTAGGGATTAATC 58.129 37.037 6.93 6.93 39.76 1.75
2692 4096 8.798975 TCAATGACCTTAGAGTAGGGATTAAT 57.201 34.615 0.00 0.00 39.76 1.40
2693 4097 8.618240 TTCAATGACCTTAGAGTAGGGATTAA 57.382 34.615 0.00 0.00 39.76 1.40
2694 4098 8.798975 ATTCAATGACCTTAGAGTAGGGATTA 57.201 34.615 0.00 0.00 39.76 1.75
2695 4099 7.698163 ATTCAATGACCTTAGAGTAGGGATT 57.302 36.000 0.00 0.00 39.76 3.01
2696 4100 7.038658 GCTATTCAATGACCTTAGAGTAGGGAT 60.039 40.741 0.00 0.00 39.76 3.85
2697 4101 6.267928 GCTATTCAATGACCTTAGAGTAGGGA 59.732 42.308 0.00 0.00 39.76 4.20
2698 4102 6.459923 GCTATTCAATGACCTTAGAGTAGGG 58.540 44.000 0.00 0.00 39.76 3.53
2699 4103 6.459923 GGCTATTCAATGACCTTAGAGTAGG 58.540 44.000 0.00 0.00 41.31 3.18
2700 4104 6.153067 CGGCTATTCAATGACCTTAGAGTAG 58.847 44.000 0.00 0.00 0.00 2.57
2701 4105 5.509163 GCGGCTATTCAATGACCTTAGAGTA 60.509 44.000 0.00 0.00 0.00 2.59
2702 4106 4.740934 GCGGCTATTCAATGACCTTAGAGT 60.741 45.833 0.00 0.00 0.00 3.24
2703 4107 3.743396 GCGGCTATTCAATGACCTTAGAG 59.257 47.826 0.00 0.00 0.00 2.43
2704 4108 3.388024 AGCGGCTATTCAATGACCTTAGA 59.612 43.478 0.00 0.00 0.00 2.10
2705 4109 3.733337 AGCGGCTATTCAATGACCTTAG 58.267 45.455 0.00 0.00 0.00 2.18
2706 4110 3.838244 AGCGGCTATTCAATGACCTTA 57.162 42.857 0.00 0.00 0.00 2.69
2707 4111 2.717639 AGCGGCTATTCAATGACCTT 57.282 45.000 0.00 0.00 0.00 3.50
2708 4112 3.838244 TTAGCGGCTATTCAATGACCT 57.162 42.857 11.04 0.00 0.00 3.85
2709 4113 5.008613 TCAATTTAGCGGCTATTCAATGACC 59.991 40.000 11.04 0.00 0.00 4.02
2710 4114 6.060028 TCAATTTAGCGGCTATTCAATGAC 57.940 37.500 11.04 0.00 0.00 3.06
2711 4115 6.882610 ATCAATTTAGCGGCTATTCAATGA 57.117 33.333 11.04 11.21 0.00 2.57
2712 4116 9.630098 ATTTATCAATTTAGCGGCTATTCAATG 57.370 29.630 11.04 6.52 0.00 2.82
2713 4117 9.630098 CATTTATCAATTTAGCGGCTATTCAAT 57.370 29.630 11.04 5.12 0.00 2.57
2714 4118 8.081633 CCATTTATCAATTTAGCGGCTATTCAA 58.918 33.333 11.04 2.72 0.00 2.69
2715 4119 7.592938 CCATTTATCAATTTAGCGGCTATTCA 58.407 34.615 11.04 0.00 0.00 2.57
2716 4120 6.528072 GCCATTTATCAATTTAGCGGCTATTC 59.472 38.462 11.04 0.00 34.17 1.75
2717 4121 6.389906 GCCATTTATCAATTTAGCGGCTATT 58.610 36.000 11.04 1.01 34.17 1.73
2718 4122 5.105756 GGCCATTTATCAATTTAGCGGCTAT 60.106 40.000 11.04 0.00 37.19 2.97
2719 4123 4.217550 GGCCATTTATCAATTTAGCGGCTA 59.782 41.667 5.42 5.42 37.19 3.93
2720 4124 3.005791 GGCCATTTATCAATTTAGCGGCT 59.994 43.478 7.98 7.98 37.19 5.52
2721 4125 3.317150 GGCCATTTATCAATTTAGCGGC 58.683 45.455 0.00 0.00 36.26 6.53
2722 4126 3.252215 TCGGCCATTTATCAATTTAGCGG 59.748 43.478 2.24 0.00 0.00 5.52
2723 4127 4.481930 TCGGCCATTTATCAATTTAGCG 57.518 40.909 2.24 0.00 0.00 4.26
2724 4128 6.528072 GCTAATCGGCCATTTATCAATTTAGC 59.472 38.462 2.24 2.47 30.04 3.09
2725 4129 7.592938 TGCTAATCGGCCATTTATCAATTTAG 58.407 34.615 2.24 0.00 0.00 1.85
2726 4130 7.517614 TGCTAATCGGCCATTTATCAATTTA 57.482 32.000 2.24 0.00 0.00 1.40
2727 4131 6.403866 TGCTAATCGGCCATTTATCAATTT 57.596 33.333 2.24 0.00 0.00 1.82
2728 4132 6.594788 ATGCTAATCGGCCATTTATCAATT 57.405 33.333 2.24 0.00 0.00 2.32
2729 4133 7.886629 ATATGCTAATCGGCCATTTATCAAT 57.113 32.000 2.24 0.00 0.00 2.57
2730 4134 7.701539 AATATGCTAATCGGCCATTTATCAA 57.298 32.000 2.24 0.00 0.00 2.57
2731 4135 8.673711 GTTAATATGCTAATCGGCCATTTATCA 58.326 33.333 2.24 2.03 0.00 2.15
2732 4136 8.129211 GGTTAATATGCTAATCGGCCATTTATC 58.871 37.037 2.24 0.00 0.00 1.75
2733 4137 7.068226 GGGTTAATATGCTAATCGGCCATTTAT 59.932 37.037 2.24 1.45 0.00 1.40
2734 4138 6.376018 GGGTTAATATGCTAATCGGCCATTTA 59.624 38.462 2.24 0.00 0.00 1.40
2735 4139 5.185056 GGGTTAATATGCTAATCGGCCATTT 59.815 40.000 2.24 0.00 0.00 2.32
2736 4140 4.705023 GGGTTAATATGCTAATCGGCCATT 59.295 41.667 2.24 4.55 0.00 3.16
2737 4141 4.018415 AGGGTTAATATGCTAATCGGCCAT 60.018 41.667 2.24 0.00 0.00 4.40
2738 4142 3.329520 AGGGTTAATATGCTAATCGGCCA 59.670 43.478 2.24 0.00 0.00 5.36
2739 4143 3.939592 GAGGGTTAATATGCTAATCGGCC 59.060 47.826 0.00 0.00 0.00 6.13
2740 4144 4.833390 AGAGGGTTAATATGCTAATCGGC 58.167 43.478 0.00 0.00 0.00 5.54
2741 4145 7.171630 AGTAGAGGGTTAATATGCTAATCGG 57.828 40.000 0.00 0.00 0.00 4.18
2742 4146 6.967767 CGAGTAGAGGGTTAATATGCTAATCG 59.032 42.308 0.00 0.00 39.10 3.34
2743 4147 6.752815 GCGAGTAGAGGGTTAATATGCTAATC 59.247 42.308 0.00 0.00 0.00 1.75
2744 4148 6.351117 GGCGAGTAGAGGGTTAATATGCTAAT 60.351 42.308 0.00 0.00 0.00 1.73
2745 4149 5.047519 GGCGAGTAGAGGGTTAATATGCTAA 60.048 44.000 0.00 0.00 0.00 3.09
2746 4150 4.461781 GGCGAGTAGAGGGTTAATATGCTA 59.538 45.833 0.00 0.00 0.00 3.49
2747 4151 3.258622 GGCGAGTAGAGGGTTAATATGCT 59.741 47.826 0.00 0.00 0.00 3.79
2748 4152 3.006537 TGGCGAGTAGAGGGTTAATATGC 59.993 47.826 0.00 0.00 0.00 3.14
2749 4153 4.810790 CTGGCGAGTAGAGGGTTAATATG 58.189 47.826 0.00 0.00 0.00 1.78
2750 4154 3.258622 GCTGGCGAGTAGAGGGTTAATAT 59.741 47.826 0.00 0.00 0.00 1.28
2751 4155 2.626743 GCTGGCGAGTAGAGGGTTAATA 59.373 50.000 0.00 0.00 0.00 0.98
2752 4156 1.413077 GCTGGCGAGTAGAGGGTTAAT 59.587 52.381 0.00 0.00 0.00 1.40
2753 4157 0.822164 GCTGGCGAGTAGAGGGTTAA 59.178 55.000 0.00 0.00 0.00 2.01
2754 4158 0.033405 AGCTGGCGAGTAGAGGGTTA 60.033 55.000 0.00 0.00 0.00 2.85
2755 4159 0.033405 TAGCTGGCGAGTAGAGGGTT 60.033 55.000 0.00 0.00 0.00 4.11
2756 4160 0.752376 GTAGCTGGCGAGTAGAGGGT 60.752 60.000 0.00 0.00 0.00 4.34
2757 4161 1.787057 CGTAGCTGGCGAGTAGAGGG 61.787 65.000 0.00 0.00 0.00 4.30
2758 4162 1.096386 ACGTAGCTGGCGAGTAGAGG 61.096 60.000 17.30 0.00 0.00 3.69
2759 4163 0.733729 AACGTAGCTGGCGAGTAGAG 59.266 55.000 17.30 0.00 0.00 2.43
2760 4164 0.450583 CAACGTAGCTGGCGAGTAGA 59.549 55.000 17.30 0.00 0.00 2.59
2761 4165 1.140407 GCAACGTAGCTGGCGAGTAG 61.140 60.000 17.30 6.68 0.00 2.57
2762 4166 1.153901 GCAACGTAGCTGGCGAGTA 60.154 57.895 17.30 0.00 0.00 2.59
2763 4167 2.432628 GCAACGTAGCTGGCGAGT 60.433 61.111 17.30 4.20 0.00 4.18
2764 4168 2.432456 TGCAACGTAGCTGGCGAG 60.432 61.111 17.30 10.87 34.99 5.03
2765 4169 2.736995 GTGCAACGTAGCTGGCGA 60.737 61.111 17.30 0.00 34.99 5.54
2915 4320 6.989169 TGCTTTGATCTAGAAGCTCCTTAATC 59.011 38.462 21.23 0.00 46.39 1.75
2960 4365 6.959639 TGGACTAAGTGCAAGAAAAGAAAT 57.040 33.333 0.00 0.00 29.43 2.17
2998 4403 7.506114 ACAACAAACCTAGTCAAATCTCACTA 58.494 34.615 0.00 0.00 0.00 2.74
3034 4439 3.321497 GTGAGCAAGAGAAAGTCGATGT 58.679 45.455 0.00 0.00 0.00 3.06
3075 4480 9.891828 GTTTATGTGAAAACATGTCTGTCAATA 57.108 29.630 0.00 2.58 38.85 1.90
3098 4503 2.340427 CCAACATGGGCGTGAGTTT 58.660 52.632 0.00 0.00 32.67 2.66
3287 4704 4.380841 TCAGAAAGTACGCGTATCCAAT 57.619 40.909 23.56 7.45 0.00 3.16
3288 4705 3.853831 TCAGAAAGTACGCGTATCCAA 57.146 42.857 23.56 0.00 0.00 3.53
3299 4716 3.787785 TGCGCGGATATTTCAGAAAGTA 58.212 40.909 8.83 0.00 0.00 2.24
3317 4734 3.545481 CTGGCGAGCTACGTTGCG 61.545 66.667 16.07 4.52 44.60 4.85
3327 4744 2.512515 GCTAGGTTGGCTGGCGAG 60.513 66.667 0.00 0.00 0.00 5.03
3328 4745 3.315142 CTGCTAGGTTGGCTGGCGA 62.315 63.158 0.00 0.00 0.00 5.54
3329 4746 2.821366 CTGCTAGGTTGGCTGGCG 60.821 66.667 0.00 0.00 0.00 5.69
3330 4747 2.257409 TAGCTGCTAGGTTGGCTGGC 62.257 60.000 5.02 0.00 36.40 4.85
3331 4748 0.462759 GTAGCTGCTAGGTTGGCTGG 60.463 60.000 10.13 0.00 36.40 4.85
3332 4749 0.462759 GGTAGCTGCTAGGTTGGCTG 60.463 60.000 10.13 0.00 36.40 4.85
3333 4750 0.909610 TGGTAGCTGCTAGGTTGGCT 60.910 55.000 10.13 0.00 38.62 4.75
3334 4751 0.462759 CTGGTAGCTGCTAGGTTGGC 60.463 60.000 10.13 0.00 0.00 4.52
3335 4752 0.462759 GCTGGTAGCTGCTAGGTTGG 60.463 60.000 16.55 0.74 38.45 3.77
3336 4753 3.071580 GCTGGTAGCTGCTAGGTTG 57.928 57.895 16.55 2.43 38.45 3.77
3346 4763 7.602517 ATTGAATAAATCGATAGCTGGTAGC 57.397 36.000 0.00 0.00 42.84 3.58
3349 4766 8.873830 CGATTATTGAATAAATCGATAGCTGGT 58.126 33.333 17.09 0.00 36.09 4.00
3350 4767 8.873830 ACGATTATTGAATAAATCGATAGCTGG 58.126 33.333 23.39 4.37 36.09 4.85
3353 4770 8.989767 GCAACGATTATTGAATAAATCGATAGC 58.010 33.333 23.39 19.91 36.09 2.97
3356 4773 9.385902 CTTGCAACGATTATTGAATAAATCGAT 57.614 29.630 23.39 15.43 36.14 3.59
3357 4774 8.394877 ACTTGCAACGATTATTGAATAAATCGA 58.605 29.630 23.39 0.00 33.79 3.59
3358 4775 8.463709 CACTTGCAACGATTATTGAATAAATCG 58.536 33.333 18.86 18.86 34.74 3.34
3359 4776 8.261908 GCACTTGCAACGATTATTGAATAAATC 58.738 33.333 1.27 0.69 41.59 2.17
3360 4777 8.118893 GCACTTGCAACGATTATTGAATAAAT 57.881 30.769 1.27 0.00 41.59 1.40
3361 4778 7.504922 GCACTTGCAACGATTATTGAATAAA 57.495 32.000 1.27 0.00 41.59 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.