Multiple sequence alignment - TraesCS3A01G354500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G354500 chr3A 100.000 4579 0 0 1 4579 602223590 602228168 0.000000e+00 8456
1 TraesCS3A01G354500 chr3D 94.220 3512 122 36 312 3811 460179003 460182445 0.000000e+00 5286
2 TraesCS3A01G354500 chr3D 88.040 301 22 5 3932 4228 460191032 460191322 1.220000e-90 344
3 TraesCS3A01G354500 chr3D 87.222 180 14 5 128 307 609102434 609102604 3.610000e-46 196
4 TraesCS3A01G354500 chr3D 85.227 176 20 3 133 308 140625246 140625415 4.710000e-40 176
5 TraesCS3A01G354500 chr3D 83.422 187 28 3 123 308 564808460 564808644 2.190000e-38 171
6 TraesCS3A01G354500 chr3D 86.364 154 17 2 120 273 535670024 535669875 1.020000e-36 165
7 TraesCS3A01G354500 chr3D 87.903 124 9 2 1 124 460178894 460179011 1.720000e-29 141
8 TraesCS3A01G354500 chr3B 94.307 3425 131 20 492 3899 609801091 609804468 0.000000e+00 5186
9 TraesCS3A01G354500 chr3B 88.690 504 34 13 4061 4557 609805008 609805495 1.100000e-165 593
10 TraesCS3A01G354500 chr3B 83.784 185 25 2 123 307 752304672 752304851 2.190000e-38 171
11 TraesCS3A01G354500 chr1B 78.343 1907 346 60 1403 3271 50204122 50205999 0.000000e+00 1171
12 TraesCS3A01G354500 chr1D 78.140 1903 351 60 1403 3271 32738173 32740044 0.000000e+00 1149
13 TraesCS3A01G354500 chr1A 77.440 1906 370 56 1403 3275 31254298 31252420 0.000000e+00 1083
14 TraesCS3A01G354500 chr1A 82.812 192 28 3 123 314 459303928 459303742 2.830000e-37 167
15 TraesCS3A01G354500 chr4B 77.118 1936 359 62 1394 3269 428845424 428847335 0.000000e+00 1044
16 TraesCS3A01G354500 chr4B 76.975 1911 365 67 1412 3275 428899330 428901212 0.000000e+00 1022
17 TraesCS3A01G354500 chr4D 77.191 1780 341 59 1538 3271 348698405 348700165 0.000000e+00 977
18 TraesCS3A01G354500 chr4D 79.079 956 176 20 2326 3269 348565262 348566205 1.800000e-178 636
19 TraesCS3A01G354500 chr2B 85.405 185 22 3 128 312 790399840 790399661 2.180000e-43 187
20 TraesCS3A01G354500 chrUn 82.584 178 25 5 133 306 22438575 22438750 7.930000e-33 152
21 TraesCS3A01G354500 chr2A 80.711 197 28 8 111 306 216837712 216837899 1.330000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G354500 chr3A 602223590 602228168 4578 False 8456.0 8456 100.0000 1 4579 1 chr3A.!!$F1 4578
1 TraesCS3A01G354500 chr3D 460178894 460182445 3551 False 2713.5 5286 91.0615 1 3811 2 chr3D.!!$F5 3810
2 TraesCS3A01G354500 chr3B 609801091 609805495 4404 False 2889.5 5186 91.4985 492 4557 2 chr3B.!!$F2 4065
3 TraesCS3A01G354500 chr1B 50204122 50205999 1877 False 1171.0 1171 78.3430 1403 3271 1 chr1B.!!$F1 1868
4 TraesCS3A01G354500 chr1D 32738173 32740044 1871 False 1149.0 1149 78.1400 1403 3271 1 chr1D.!!$F1 1868
5 TraesCS3A01G354500 chr1A 31252420 31254298 1878 True 1083.0 1083 77.4400 1403 3275 1 chr1A.!!$R1 1872
6 TraesCS3A01G354500 chr4B 428845424 428847335 1911 False 1044.0 1044 77.1180 1394 3269 1 chr4B.!!$F1 1875
7 TraesCS3A01G354500 chr4B 428899330 428901212 1882 False 1022.0 1022 76.9750 1412 3275 1 chr4B.!!$F2 1863
8 TraesCS3A01G354500 chr4D 348698405 348700165 1760 False 977.0 977 77.1910 1538 3271 1 chr4D.!!$F2 1733
9 TraesCS3A01G354500 chr4D 348565262 348566205 943 False 636.0 636 79.0790 2326 3269 1 chr4D.!!$F1 943

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.037734 TGTGGCTAGGTCTCAGTCGA 59.962 55.000 0.00 0.0 0.00 4.20 F
243 244 0.108992 GTGCACGGATCTCCACGTAA 60.109 55.000 0.00 0.0 42.04 3.18 F
244 245 0.172578 TGCACGGATCTCCACGTAAG 59.827 55.000 0.00 0.0 42.04 2.34 F
411 415 0.318120 CCCAGGTTGCATTGGTCAAC 59.682 55.000 10.44 0.0 42.13 3.18 F
895 922 0.322546 ATCGCCTCTTCAAACCCACC 60.323 55.000 0.00 0.0 0.00 4.61 F
2016 2047 1.381872 CATCCTCCTCTCCGGTGGT 60.382 63.158 0.00 0.0 45.01 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1218 1246 1.372838 CGCCACCCGCATTATTGTCA 61.373 55.000 0.00 0.0 37.30 3.58 R
1223 1251 2.111043 CCTCGCCACCCGCATTAT 59.889 61.111 0.00 0.0 37.30 1.28 R
2016 2047 2.338620 CCGCTGAAGACGGTGTGA 59.661 61.111 0.00 0.0 45.70 3.58 R
2241 2293 3.207669 GCGCTGATGGCCTCCTTG 61.208 66.667 3.32 0.0 37.74 3.61 R
2556 2632 0.838122 CCTGGAGGAACACTGGGAGT 60.838 60.000 0.00 0.0 37.39 3.85 R
3718 3813 0.248580 CAACACGGCGCATGCATTAT 60.249 50.000 19.57 0.0 45.35 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.453155 GGTAGTGCATCAACCCAGTG 58.547 55.000 0.00 0.00 0.00 3.66
40 41 3.054679 TGCATCAACCCAGTGCAAT 57.945 47.368 0.00 0.00 44.99 3.56
41 42 2.212812 TGCATCAACCCAGTGCAATA 57.787 45.000 0.00 0.00 44.99 1.90
42 43 2.523245 TGCATCAACCCAGTGCAATAA 58.477 42.857 0.00 0.00 44.99 1.40
55 56 4.152759 CAGTGCAATAAAGGCAACCAAATG 59.847 41.667 0.00 0.00 43.91 2.32
56 57 4.040217 AGTGCAATAAAGGCAACCAAATGA 59.960 37.500 0.00 0.00 43.91 2.57
65 66 5.294734 AGGCAACCAAATGACATTTTTCT 57.705 34.783 10.77 0.91 37.17 2.52
66 67 5.299949 AGGCAACCAAATGACATTTTTCTC 58.700 37.500 10.77 0.64 37.17 2.87
67 68 4.452114 GGCAACCAAATGACATTTTTCTCC 59.548 41.667 10.77 5.66 0.00 3.71
68 69 4.452114 GCAACCAAATGACATTTTTCTCCC 59.548 41.667 10.77 0.00 0.00 4.30
69 70 5.609423 CAACCAAATGACATTTTTCTCCCA 58.391 37.500 10.77 0.00 0.00 4.37
100 101 4.315803 TGAAAGTCATCCCTTCTCGAAAC 58.684 43.478 0.00 0.00 0.00 2.78
110 111 4.994852 TCCCTTCTCGAAACTTTACACATG 59.005 41.667 0.00 0.00 0.00 3.21
113 114 6.363473 CCTTCTCGAAACTTTACACATGAAC 58.637 40.000 0.00 0.00 0.00 3.18
115 116 7.307989 CCTTCTCGAAACTTTACACATGAACAT 60.308 37.037 0.00 0.00 0.00 2.71
116 117 8.596271 TTCTCGAAACTTTACACATGAACATA 57.404 30.769 0.00 0.00 0.00 2.29
117 118 8.596271 TCTCGAAACTTTACACATGAACATAA 57.404 30.769 0.00 0.00 0.00 1.90
118 119 8.492748 TCTCGAAACTTTACACATGAACATAAC 58.507 33.333 0.00 0.00 0.00 1.89
119 120 8.144155 TCGAAACTTTACACATGAACATAACA 57.856 30.769 0.00 0.00 0.00 2.41
120 121 8.065407 TCGAAACTTTACACATGAACATAACAC 58.935 33.333 0.00 0.00 0.00 3.32
121 122 7.853437 CGAAACTTTACACATGAACATAACACA 59.147 33.333 0.00 0.00 0.00 3.72
122 123 9.509855 GAAACTTTACACATGAACATAACACAA 57.490 29.630 0.00 0.00 0.00 3.33
123 124 9.862371 AAACTTTACACATGAACATAACACAAA 57.138 25.926 0.00 0.00 0.00 2.83
124 125 9.515020 AACTTTACACATGAACATAACACAAAG 57.485 29.630 0.00 0.00 0.00 2.77
125 126 8.134895 ACTTTACACATGAACATAACACAAAGG 58.865 33.333 0.00 0.00 0.00 3.11
126 127 7.809546 TTACACATGAACATAACACAAAGGA 57.190 32.000 0.00 0.00 0.00 3.36
127 128 6.899393 ACACATGAACATAACACAAAGGAT 57.101 33.333 0.00 0.00 0.00 3.24
128 129 6.680810 ACACATGAACATAACACAAAGGATG 58.319 36.000 0.00 0.00 0.00 3.51
129 130 6.265196 ACACATGAACATAACACAAAGGATGT 59.735 34.615 0.00 0.00 45.34 3.06
138 139 2.789409 ACAAAGGATGTGGCTAGGTC 57.211 50.000 0.00 0.00 41.93 3.85
139 140 2.269940 ACAAAGGATGTGGCTAGGTCT 58.730 47.619 0.00 0.00 41.93 3.85
140 141 2.237392 ACAAAGGATGTGGCTAGGTCTC 59.763 50.000 0.00 0.00 41.93 3.36
141 142 2.237143 CAAAGGATGTGGCTAGGTCTCA 59.763 50.000 0.00 0.00 0.00 3.27
142 143 1.786937 AGGATGTGGCTAGGTCTCAG 58.213 55.000 0.00 0.00 0.00 3.35
143 144 1.007721 AGGATGTGGCTAGGTCTCAGT 59.992 52.381 0.00 0.00 0.00 3.41
144 145 1.410882 GGATGTGGCTAGGTCTCAGTC 59.589 57.143 0.00 0.00 0.00 3.51
145 146 1.066303 GATGTGGCTAGGTCTCAGTCG 59.934 57.143 0.00 0.00 0.00 4.18
146 147 0.037734 TGTGGCTAGGTCTCAGTCGA 59.962 55.000 0.00 0.00 0.00 4.20
147 148 0.452585 GTGGCTAGGTCTCAGTCGAC 59.547 60.000 7.70 7.70 0.00 4.20
148 149 0.328592 TGGCTAGGTCTCAGTCGACT 59.671 55.000 13.58 13.58 34.38 4.18
149 150 0.736053 GGCTAGGTCTCAGTCGACTG 59.264 60.000 34.76 34.76 45.08 3.51
177 178 8.379457 ACTTAACCAAGTCTAAATCAAGTGAC 57.621 34.615 0.00 0.00 41.25 3.67
178 179 7.990886 ACTTAACCAAGTCTAAATCAAGTGACA 59.009 33.333 0.00 0.00 41.25 3.58
179 180 8.918202 TTAACCAAGTCTAAATCAAGTGACAT 57.082 30.769 0.00 0.00 32.41 3.06
181 182 8.918202 AACCAAGTCTAAATCAAGTGACATAA 57.082 30.769 0.00 0.00 32.41 1.90
182 183 8.324163 ACCAAGTCTAAATCAAGTGACATAAC 57.676 34.615 0.00 0.00 32.41 1.89
183 184 7.936847 ACCAAGTCTAAATCAAGTGACATAACA 59.063 33.333 0.00 0.00 32.41 2.41
184 185 8.950210 CCAAGTCTAAATCAAGTGACATAACAT 58.050 33.333 0.00 0.00 32.41 2.71
185 186 9.764870 CAAGTCTAAATCAAGTGACATAACATG 57.235 33.333 0.00 0.00 32.41 3.21
186 187 7.978982 AGTCTAAATCAAGTGACATAACATGC 58.021 34.615 0.00 0.00 32.41 4.06
187 188 7.607607 AGTCTAAATCAAGTGACATAACATGCA 59.392 33.333 0.00 0.00 32.41 3.96
188 189 8.236586 GTCTAAATCAAGTGACATAACATGCAA 58.763 33.333 0.00 0.00 0.00 4.08
189 190 8.453320 TCTAAATCAAGTGACATAACATGCAAG 58.547 33.333 0.00 0.00 0.00 4.01
190 191 6.822667 AATCAAGTGACATAACATGCAAGA 57.177 33.333 0.00 0.00 0.00 3.02
191 192 6.822667 ATCAAGTGACATAACATGCAAGAA 57.177 33.333 0.00 0.00 0.00 2.52
192 193 6.631971 TCAAGTGACATAACATGCAAGAAA 57.368 33.333 0.00 0.00 0.00 2.52
193 194 6.671190 TCAAGTGACATAACATGCAAGAAAG 58.329 36.000 0.00 0.00 0.00 2.62
194 195 6.486320 TCAAGTGACATAACATGCAAGAAAGA 59.514 34.615 0.00 0.00 0.00 2.52
195 196 6.882610 AGTGACATAACATGCAAGAAAGAA 57.117 33.333 0.00 0.00 0.00 2.52
196 197 7.275888 AGTGACATAACATGCAAGAAAGAAA 57.724 32.000 0.00 0.00 0.00 2.52
197 198 7.715657 AGTGACATAACATGCAAGAAAGAAAA 58.284 30.769 0.00 0.00 0.00 2.29
198 199 8.196771 AGTGACATAACATGCAAGAAAGAAAAA 58.803 29.630 0.00 0.00 0.00 1.94
230 231 8.873242 AAAAACTAAAAAGAAAAATGTGCACG 57.127 26.923 13.13 0.00 0.00 5.34
231 232 6.582437 AACTAAAAAGAAAAATGTGCACGG 57.418 33.333 13.13 0.00 0.00 4.94
232 233 5.897050 ACTAAAAAGAAAAATGTGCACGGA 58.103 33.333 13.13 0.00 0.00 4.69
233 234 6.512297 ACTAAAAAGAAAAATGTGCACGGAT 58.488 32.000 13.13 0.00 0.00 4.18
234 235 5.905480 AAAAAGAAAAATGTGCACGGATC 57.095 34.783 13.13 6.12 0.00 3.36
235 236 4.853924 AAAGAAAAATGTGCACGGATCT 57.146 36.364 13.13 8.34 0.00 2.75
236 237 4.425577 AAGAAAAATGTGCACGGATCTC 57.574 40.909 13.13 6.17 0.00 2.75
237 238 2.749621 AGAAAAATGTGCACGGATCTCC 59.250 45.455 13.13 0.00 0.00 3.71
238 239 2.198827 AAAATGTGCACGGATCTCCA 57.801 45.000 13.13 0.00 35.14 3.86
239 240 1.453155 AAATGTGCACGGATCTCCAC 58.547 50.000 13.13 0.00 35.14 4.02
240 241 0.740868 AATGTGCACGGATCTCCACG 60.741 55.000 13.13 0.00 35.14 4.94
241 242 1.888436 ATGTGCACGGATCTCCACGT 61.888 55.000 13.13 0.00 45.25 4.49
242 243 1.245376 TGTGCACGGATCTCCACGTA 61.245 55.000 13.13 0.00 42.04 3.57
243 244 0.108992 GTGCACGGATCTCCACGTAA 60.109 55.000 0.00 0.00 42.04 3.18
244 245 0.172578 TGCACGGATCTCCACGTAAG 59.827 55.000 0.00 0.00 42.04 2.34
245 246 0.454600 GCACGGATCTCCACGTAAGA 59.545 55.000 2.62 2.62 42.04 2.10
246 247 1.067212 GCACGGATCTCCACGTAAGAT 59.933 52.381 11.33 11.33 42.04 2.40
247 248 2.859032 GCACGGATCTCCACGTAAGATC 60.859 54.545 22.78 22.78 45.54 2.75
253 254 5.188327 GATCTCCACGTAAGATCACATGA 57.812 43.478 24.61 5.37 45.57 3.07
254 255 5.592054 GATCTCCACGTAAGATCACATGAA 58.408 41.667 24.61 0.00 45.57 2.57
255 256 5.598416 TCTCCACGTAAGATCACATGAAT 57.402 39.130 0.00 0.00 43.62 2.57
256 257 6.709018 TCTCCACGTAAGATCACATGAATA 57.291 37.500 0.00 0.00 43.62 1.75
257 258 7.290110 TCTCCACGTAAGATCACATGAATAT 57.710 36.000 0.00 0.00 43.62 1.28
258 259 8.404107 TCTCCACGTAAGATCACATGAATATA 57.596 34.615 0.00 0.00 43.62 0.86
259 260 8.515414 TCTCCACGTAAGATCACATGAATATAG 58.485 37.037 0.00 0.00 43.62 1.31
260 261 8.178313 TCCACGTAAGATCACATGAATATAGT 57.822 34.615 0.00 0.00 43.62 2.12
261 262 9.292195 TCCACGTAAGATCACATGAATATAGTA 57.708 33.333 0.00 0.00 43.62 1.82
264 265 9.989869 ACGTAAGATCACATGAATATAGTATCG 57.010 33.333 0.00 0.00 43.62 2.92
265 266 9.439537 CGTAAGATCACATGAATATAGTATCGG 57.560 37.037 0.00 0.00 43.02 4.18
266 267 9.239002 GTAAGATCACATGAATATAGTATCGGC 57.761 37.037 0.00 0.00 0.00 5.54
267 268 7.652524 AGATCACATGAATATAGTATCGGCT 57.347 36.000 0.00 0.00 0.00 5.52
268 269 7.487484 AGATCACATGAATATAGTATCGGCTG 58.513 38.462 0.00 0.00 0.00 4.85
269 270 6.834168 TCACATGAATATAGTATCGGCTGA 57.166 37.500 0.00 0.00 0.00 4.26
270 271 6.856895 TCACATGAATATAGTATCGGCTGAG 58.143 40.000 0.00 0.00 0.00 3.35
271 272 6.659242 TCACATGAATATAGTATCGGCTGAGA 59.341 38.462 0.00 0.00 0.00 3.27
272 273 6.749578 CACATGAATATAGTATCGGCTGAGAC 59.250 42.308 12.50 12.50 36.57 3.36
274 275 7.177568 ACATGAATATAGTATCGGCTGAGACTT 59.822 37.037 26.71 16.54 43.97 3.01
275 276 6.914259 TGAATATAGTATCGGCTGAGACTTG 58.086 40.000 26.71 0.00 43.97 3.16
276 277 5.906113 ATATAGTATCGGCTGAGACTTGG 57.094 43.478 26.71 0.00 43.97 3.61
277 278 1.853963 AGTATCGGCTGAGACTTGGT 58.146 50.000 17.11 0.00 43.97 3.67
278 279 2.180276 AGTATCGGCTGAGACTTGGTT 58.820 47.619 17.11 0.00 43.97 3.67
279 280 3.362706 AGTATCGGCTGAGACTTGGTTA 58.637 45.455 17.11 0.00 43.97 2.85
280 281 3.767673 AGTATCGGCTGAGACTTGGTTAA 59.232 43.478 17.11 0.00 43.97 2.01
281 282 3.695830 ATCGGCTGAGACTTGGTTAAA 57.304 42.857 0.00 0.00 0.00 1.52
282 283 3.695830 TCGGCTGAGACTTGGTTAAAT 57.304 42.857 0.00 0.00 0.00 1.40
283 284 3.596214 TCGGCTGAGACTTGGTTAAATC 58.404 45.455 0.00 0.00 0.00 2.17
284 285 3.260884 TCGGCTGAGACTTGGTTAAATCT 59.739 43.478 0.00 0.00 0.00 2.40
285 286 4.003648 CGGCTGAGACTTGGTTAAATCTT 58.996 43.478 0.00 0.00 0.00 2.40
286 287 5.046878 TCGGCTGAGACTTGGTTAAATCTTA 60.047 40.000 0.00 0.00 0.00 2.10
287 288 5.292101 CGGCTGAGACTTGGTTAAATCTTAG 59.708 44.000 0.00 0.00 0.00 2.18
288 289 6.174049 GGCTGAGACTTGGTTAAATCTTAGT 58.826 40.000 0.00 0.00 29.82 2.24
289 290 6.314152 GGCTGAGACTTGGTTAAATCTTAGTC 59.686 42.308 0.00 0.00 33.86 2.59
290 291 6.035112 GCTGAGACTTGGTTAAATCTTAGTCG 59.965 42.308 0.00 0.00 37.62 4.18
291 292 7.223260 TGAGACTTGGTTAAATCTTAGTCGA 57.777 36.000 0.00 0.00 37.62 4.20
292 293 7.088905 TGAGACTTGGTTAAATCTTAGTCGAC 58.911 38.462 7.70 7.70 37.62 4.20
293 294 7.039923 TGAGACTTGGTTAAATCTTAGTCGACT 60.040 37.037 23.66 23.66 37.62 4.18
294 295 8.345724 AGACTTGGTTAAATCTTAGTCGACTA 57.654 34.615 21.25 21.25 37.62 2.59
295 296 8.800332 AGACTTGGTTAAATCTTAGTCGACTAA 58.200 33.333 30.65 30.65 37.62 2.24
310 311 7.507672 AGTCGACTAAGATTTAACAATCACG 57.492 36.000 18.46 0.00 41.37 4.35
400 404 0.881118 GTACATGTGCACCCAGGTTG 59.119 55.000 15.69 5.05 30.99 3.77
411 415 0.318120 CCCAGGTTGCATTGGTCAAC 59.682 55.000 10.44 0.00 42.13 3.18
437 441 5.221342 TGCCATGTTTAGTAACCCACAAAAG 60.221 40.000 0.00 0.00 33.15 2.27
448 452 3.490348 ACCCACAAAAGATCCTGTCAAG 58.510 45.455 0.00 0.00 0.00 3.02
466 470 3.112075 ACGCATTGCACCGTCTCG 61.112 61.111 9.69 0.00 31.00 4.04
482 486 3.449632 GTCTCGCATTCTCTCCCTAAAC 58.550 50.000 0.00 0.00 0.00 2.01
494 498 7.324388 TCTCTCCCTAAACCTCAATTGTTTA 57.676 36.000 5.13 2.79 37.18 2.01
495 499 7.166167 TCTCTCCCTAAACCTCAATTGTTTAC 58.834 38.462 5.13 0.00 37.18 2.01
514 518 8.751302 TGTTTACCTTTCTTGTTCAAAAAGTC 57.249 30.769 13.40 0.00 0.00 3.01
528 532 7.810759 TGTTCAAAAAGTCTAGTTTGTTTGTCC 59.189 33.333 9.92 5.18 36.36 4.02
541 548 5.888982 TTGTTTGTCCTTCTAACTCTCCT 57.111 39.130 0.00 0.00 34.03 3.69
549 556 4.789159 TCCTTCTAACTCTCCTCTCCTGTA 59.211 45.833 0.00 0.00 0.00 2.74
551 558 5.768164 CCTTCTAACTCTCCTCTCCTGTATC 59.232 48.000 0.00 0.00 0.00 2.24
589 596 0.538746 CCACCCACCCAAACCTACAC 60.539 60.000 0.00 0.00 0.00 2.90
634 641 2.188947 TAACCCCACCCTCTCCCCT 61.189 63.158 0.00 0.00 0.00 4.79
635 642 1.768231 TAACCCCACCCTCTCCCCTT 61.768 60.000 0.00 0.00 0.00 3.95
637 644 2.456840 CCCACCCTCTCCCCTTCT 59.543 66.667 0.00 0.00 0.00 2.85
638 645 1.690985 CCCACCCTCTCCCCTTCTC 60.691 68.421 0.00 0.00 0.00 2.87
639 646 1.394151 CCACCCTCTCCCCTTCTCT 59.606 63.158 0.00 0.00 0.00 3.10
661 668 1.965930 GGAGACCATGCACGCAACA 60.966 57.895 0.00 0.00 0.00 3.33
700 707 2.366972 CACCCCGATTCCTCCCCT 60.367 66.667 0.00 0.00 0.00 4.79
701 708 2.040779 ACCCCGATTCCTCCCCTC 60.041 66.667 0.00 0.00 0.00 4.30
702 709 2.849646 CCCCGATTCCTCCCCTCC 60.850 72.222 0.00 0.00 0.00 4.30
703 710 2.849646 CCCGATTCCTCCCCTCCC 60.850 72.222 0.00 0.00 0.00 4.30
704 711 2.849646 CCGATTCCTCCCCTCCCC 60.850 72.222 0.00 0.00 0.00 4.81
705 712 2.849646 CGATTCCTCCCCTCCCCC 60.850 72.222 0.00 0.00 0.00 5.40
706 713 2.849646 GATTCCTCCCCTCCCCCG 60.850 72.222 0.00 0.00 0.00 5.73
756 781 1.686325 CCCCATCTCCTACACCACCG 61.686 65.000 0.00 0.00 0.00 4.94
816 841 2.178912 TTAAAACACGAGCTCCCAGG 57.821 50.000 8.47 0.00 0.00 4.45
817 842 0.323629 TAAAACACGAGCTCCCAGGG 59.676 55.000 8.47 0.00 0.00 4.45
818 843 1.415672 AAAACACGAGCTCCCAGGGA 61.416 55.000 8.35 8.35 0.00 4.20
819 844 2.113243 AAACACGAGCTCCCAGGGAC 62.113 60.000 3.01 1.65 0.00 4.46
820 845 2.681778 CACGAGCTCCCAGGGACT 60.682 66.667 3.01 7.22 43.88 3.85
895 922 0.322546 ATCGCCTCTTCAAACCCACC 60.323 55.000 0.00 0.00 0.00 4.61
931 958 2.303175 CTCCTACTTAAGCTCGCCTCT 58.697 52.381 1.29 0.00 0.00 3.69
990 1018 2.507102 CAGGAGTGCCGCGTAGTG 60.507 66.667 4.92 0.00 39.96 2.74
1223 1251 3.583276 CTGCGGGCGTAGGTGACAA 62.583 63.158 0.00 0.00 0.00 3.18
1233 1261 2.740580 CGTAGGTGACAATAATGCGGGT 60.741 50.000 0.00 0.00 0.00 5.28
2016 2047 1.381872 CATCCTCCTCTCCGGTGGT 60.382 63.158 0.00 0.00 45.01 4.16
2679 2755 2.750350 CCGCTGGTGGTCCTTTCT 59.250 61.111 0.00 0.00 34.23 2.52
2928 3004 0.620556 CCTACTGGCTGTGGTTCCAT 59.379 55.000 7.34 0.00 0.00 3.41
3323 3417 1.067142 TGATTTGAACCGTCCGAGGAG 60.067 52.381 0.00 0.00 34.73 3.69
3333 3427 0.818938 GTCCGAGGAGGGAAGAAGAC 59.181 60.000 0.00 0.00 41.52 3.01
3364 3458 5.439721 TGATTAAGCAGATGCCACACTATT 58.560 37.500 0.14 0.00 43.38 1.73
3365 3459 6.591001 TGATTAAGCAGATGCCACACTATTA 58.409 36.000 0.14 0.00 43.38 0.98
3391 3485 4.183865 TCTATCGGTCTCTGCAATTGTTG 58.816 43.478 7.40 0.47 0.00 3.33
3514 3609 2.151502 TCCACTGCCCTTTTTGTTCA 57.848 45.000 0.00 0.00 0.00 3.18
3519 3614 4.273235 CCACTGCCCTTTTTGTTCATTTTC 59.727 41.667 0.00 0.00 0.00 2.29
3523 3618 4.820716 TGCCCTTTTTGTTCATTTTCCATG 59.179 37.500 0.00 0.00 0.00 3.66
3524 3619 4.821260 GCCCTTTTTGTTCATTTTCCATGT 59.179 37.500 0.00 0.00 0.00 3.21
3525 3620 5.277925 GCCCTTTTTGTTCATTTTCCATGTG 60.278 40.000 0.00 0.00 0.00 3.21
3526 3621 5.821995 CCCTTTTTGTTCATTTTCCATGTGT 59.178 36.000 0.00 0.00 0.00 3.72
3527 3622 6.238429 CCCTTTTTGTTCATTTTCCATGTGTG 60.238 38.462 0.00 0.00 0.00 3.82
3529 3624 7.148272 CCTTTTTGTTCATTTTCCATGTGTGTT 60.148 33.333 0.00 0.00 0.00 3.32
3530 3625 6.659361 TTTGTTCATTTTCCATGTGTGTTG 57.341 33.333 0.00 0.00 0.00 3.33
3531 3626 5.336150 TGTTCATTTTCCATGTGTGTTGT 57.664 34.783 0.00 0.00 0.00 3.32
3533 3628 6.502652 TGTTCATTTTCCATGTGTGTTGTAG 58.497 36.000 0.00 0.00 0.00 2.74
3534 3629 5.119931 TCATTTTCCATGTGTGTTGTAGC 57.880 39.130 0.00 0.00 0.00 3.58
3535 3630 4.022416 TCATTTTCCATGTGTGTTGTAGCC 60.022 41.667 0.00 0.00 0.00 3.93
3544 3639 3.064931 GTGTGTTGTAGCCTTGTAGACC 58.935 50.000 0.00 0.00 0.00 3.85
3555 3650 4.072131 GCCTTGTAGACCTGTGAAATGAA 58.928 43.478 0.00 0.00 0.00 2.57
3559 3654 7.106239 CCTTGTAGACCTGTGAAATGAAGTAT 58.894 38.462 0.00 0.00 0.00 2.12
3561 3656 9.653287 CTTGTAGACCTGTGAAATGAAGTATTA 57.347 33.333 0.00 0.00 0.00 0.98
3599 3694 4.927425 CCAAAATGCTTGTCCAAATCTCAG 59.073 41.667 0.00 0.00 0.00 3.35
3614 3709 3.691049 TCTCAGGAAAAACAAACGCAG 57.309 42.857 0.00 0.00 0.00 5.18
3627 3722 0.239347 AACGCAGTCTGATGCAAAGC 59.761 50.000 3.32 0.00 45.00 3.51
3641 3736 4.128925 TGCAAAGCAACATGGTTTTGTA 57.871 36.364 9.15 2.81 44.59 2.41
3657 3752 3.737032 TTGTAGTGTTGTGGTCGATCA 57.263 42.857 0.00 0.00 0.00 2.92
3659 3754 2.626266 TGTAGTGTTGTGGTCGATCACT 59.374 45.455 27.93 17.16 41.32 3.41
3660 3755 2.910688 AGTGTTGTGGTCGATCACTT 57.089 45.000 27.93 7.34 36.17 3.16
3661 3756 4.278919 TGTAGTGTTGTGGTCGATCACTTA 59.721 41.667 27.93 14.29 39.54 2.24
3679 3774 2.825861 TATTATCCGTTTCTCCCGCC 57.174 50.000 0.00 0.00 0.00 6.13
3718 3813 3.358111 TGTGGTTTGGAACTTCACTCA 57.642 42.857 0.00 0.00 0.00 3.41
3769 3866 4.201910 TGCAGAAAAGAAGAACGTTCCTTG 60.202 41.667 24.22 11.10 0.00 3.61
3826 3923 3.878086 TCGAACAACAGAGCACAAATC 57.122 42.857 0.00 0.00 0.00 2.17
3846 3943 1.732259 CTGTGCCGTTCTCATGTTACC 59.268 52.381 0.00 0.00 0.00 2.85
3853 3951 4.315803 CCGTTCTCATGTTACCATATCCC 58.684 47.826 0.00 0.00 0.00 3.85
3866 3964 9.802039 TGTTACCATATCCCTTTATTATGTTCC 57.198 33.333 0.00 0.00 0.00 3.62
3884 3982 3.179443 TCCTAACCGAACATCAGATGC 57.821 47.619 10.59 0.00 0.00 3.91
3919 4055 3.146066 TGAAAATGTCACGGCTAGCTTT 58.854 40.909 15.72 4.29 0.00 3.51
3925 4061 1.394917 GTCACGGCTAGCTTTCATGTG 59.605 52.381 15.72 13.11 0.00 3.21
3926 4062 1.001974 TCACGGCTAGCTTTCATGTGT 59.998 47.619 15.72 0.00 0.00 3.72
3927 4063 1.806542 CACGGCTAGCTTTCATGTGTT 59.193 47.619 15.72 0.00 0.00 3.32
3928 4064 1.806542 ACGGCTAGCTTTCATGTGTTG 59.193 47.619 15.72 0.00 0.00 3.33
3929 4065 1.131126 CGGCTAGCTTTCATGTGTTGG 59.869 52.381 15.72 0.00 0.00 3.77
3957 4093 5.590818 ACAGAGACTGGGTTAGATAGGAAA 58.409 41.667 0.00 0.00 35.51 3.13
3970 4106 4.011517 GGAAACGTGCGGGAGGGA 62.012 66.667 0.00 0.00 0.00 4.20
3971 4107 2.267961 GAAACGTGCGGGAGGGAT 59.732 61.111 0.00 0.00 0.00 3.85
3972 4108 1.814169 GAAACGTGCGGGAGGGATC 60.814 63.158 0.00 0.00 0.00 3.36
3973 4109 3.659089 AAACGTGCGGGAGGGATCG 62.659 63.158 0.00 0.00 0.00 3.69
3986 4122 1.210478 AGGGATCGAGACATGGGTTTG 59.790 52.381 0.00 0.00 0.00 2.93
4004 4140 0.701731 TGGGTTGGGTGATGGTTAGG 59.298 55.000 0.00 0.00 0.00 2.69
4006 4142 1.340697 GGGTTGGGTGATGGTTAGGTC 60.341 57.143 0.00 0.00 0.00 3.85
4027 4163 6.101296 AGGTCTACTTATCATAACCAAAGGGG 59.899 42.308 0.00 0.00 44.81 4.79
4036 4172 4.500265 CCAAAGGGGTCACACCTG 57.500 61.111 0.00 0.00 38.63 4.00
4037 4173 1.903404 CCAAAGGGGTCACACCTGC 60.903 63.158 0.00 0.00 38.63 4.85
4038 4174 1.152777 CAAAGGGGTCACACCTGCA 60.153 57.895 0.00 0.00 38.63 4.41
4039 4175 0.540365 CAAAGGGGTCACACCTGCAT 60.540 55.000 0.00 0.00 38.63 3.96
4040 4176 0.251341 AAAGGGGTCACACCTGCATC 60.251 55.000 0.00 0.00 38.63 3.91
4041 4177 2.436646 GGGGTCACACCTGCATCG 60.437 66.667 0.00 0.00 38.64 3.84
4042 4178 2.436646 GGGTCACACCTGCATCGG 60.437 66.667 0.00 0.00 38.64 4.18
4059 4195 2.551912 GGCGGGCCGTAATGAATGG 61.552 63.158 28.82 0.00 37.31 3.16
4071 4565 1.742761 ATGAATGGCCACGAGACAAG 58.257 50.000 8.16 0.00 0.00 3.16
4098 4593 2.978824 GGCTTACGTGCTCTCCCA 59.021 61.111 0.00 0.00 0.00 4.37
4099 4594 1.448013 GGCTTACGTGCTCTCCCAC 60.448 63.158 0.00 0.00 0.00 4.61
4127 4622 0.318441 CCGATACTGCATCCATCCGT 59.682 55.000 0.00 0.00 0.00 4.69
4141 4641 3.260884 TCCATCCGTAAAAGTCTCTGCTT 59.739 43.478 0.00 0.00 0.00 3.91
4156 4656 1.146957 TGCTTTGCTTTGCTTGTGCG 61.147 50.000 0.00 0.00 43.34 5.34
4159 4659 0.871163 TTTGCTTTGCTTGTGCGAGC 60.871 50.000 4.53 4.53 45.23 5.03
4238 4738 0.324091 AGAAAGCAGCAAGGATGGGG 60.324 55.000 0.00 0.00 0.00 4.96
4253 4753 1.365999 GGGGTTTGGTTTCGCTTGG 59.634 57.895 0.00 0.00 0.00 3.61
4283 4783 4.380867 CCATTGTTGATTGGTAGCTCAACC 60.381 45.833 18.78 5.39 46.82 3.77
4326 4826 4.590850 ACAGCTTCCTTGAAACATTTCC 57.409 40.909 2.00 0.00 36.36 3.13
4330 4830 3.857010 GCTTCCTTGAAACATTTCCCGTG 60.857 47.826 2.00 0.00 36.36 4.94
4368 4868 1.285280 CCCCTCTGACAATGTACCCA 58.715 55.000 0.00 0.00 0.00 4.51
4403 4904 5.499004 AAAATGCTCAACACCTCCTACTA 57.501 39.130 0.00 0.00 0.00 1.82
4407 4908 3.447586 TGCTCAACACCTCCTACTATCAC 59.552 47.826 0.00 0.00 0.00 3.06
4409 4910 4.160626 GCTCAACACCTCCTACTATCACTT 59.839 45.833 0.00 0.00 0.00 3.16
4413 4914 6.895756 TCAACACCTCCTACTATCACTTGTAT 59.104 38.462 0.00 0.00 0.00 2.29
4414 4915 6.716934 ACACCTCCTACTATCACTTGTATG 57.283 41.667 0.00 0.00 0.00 2.39
4415 4916 6.195700 ACACCTCCTACTATCACTTGTATGT 58.804 40.000 0.00 0.00 0.00 2.29
4416 4917 7.351952 ACACCTCCTACTATCACTTGTATGTA 58.648 38.462 0.00 0.00 0.00 2.29
4417 4918 7.502895 ACACCTCCTACTATCACTTGTATGTAG 59.497 40.741 0.00 0.00 0.00 2.74
4418 4919 7.502895 CACCTCCTACTATCACTTGTATGTAGT 59.497 40.741 0.00 0.00 0.00 2.73
4419 4920 8.721479 ACCTCCTACTATCACTTGTATGTAGTA 58.279 37.037 0.00 0.00 0.00 1.82
4420 4921 9.570468 CCTCCTACTATCACTTGTATGTAGTAA 57.430 37.037 0.00 0.00 30.15 2.24
4431 4932 7.435488 CACTTGTATGTAGTAAGAGTATGTGCC 59.565 40.741 0.00 0.00 0.00 5.01
4435 4936 7.776500 TGTATGTAGTAAGAGTATGTGCCAGTA 59.224 37.037 0.00 0.00 0.00 2.74
4497 4998 0.034670 AGCCATTCCAGAGGAAGCAC 60.035 55.000 11.17 1.23 45.48 4.40
4501 5002 2.022195 CATTCCAGAGGAAGCACCATG 58.978 52.381 4.65 0.00 45.48 3.66
4521 5022 1.338337 GATGATCATGGTCGTCCGAGT 59.662 52.381 14.30 0.00 36.30 4.18
4527 5028 4.436998 GGTCGTCCGAGTGGCTGG 62.437 72.222 0.00 0.00 34.14 4.85
4532 5033 3.371063 TCCGAGTGGCTGGTCGTC 61.371 66.667 0.00 0.00 34.27 4.20
4533 5034 4.778415 CCGAGTGGCTGGTCGTCG 62.778 72.222 0.00 0.00 34.27 5.12
4557 5058 0.325671 AGAAGATTCCCGGCAGAGGA 60.326 55.000 0.00 0.00 0.00 3.71
4558 5059 0.179070 GAAGATTCCCGGCAGAGGAC 60.179 60.000 0.00 0.00 31.50 3.85
4559 5060 0.909610 AAGATTCCCGGCAGAGGACA 60.910 55.000 0.00 0.00 31.50 4.02
4560 5061 0.692419 AGATTCCCGGCAGAGGACAT 60.692 55.000 0.00 0.00 31.50 3.06
4561 5062 0.533755 GATTCCCGGCAGAGGACATG 60.534 60.000 0.00 0.00 31.50 3.21
4562 5063 2.615227 ATTCCCGGCAGAGGACATGC 62.615 60.000 0.00 0.00 43.09 4.06
4563 5064 3.790437 CCCGGCAGAGGACATGCT 61.790 66.667 0.00 0.00 43.35 3.79
4567 5068 3.003740 GGCAGAGGACATGCTGATC 57.996 57.895 2.61 0.00 43.35 2.92
4568 5069 0.469070 GGCAGAGGACATGCTGATCT 59.531 55.000 2.61 0.00 43.35 2.75
4569 5070 1.584175 GCAGAGGACATGCTGATCTG 58.416 55.000 11.46 11.46 40.59 2.90
4570 5071 1.134461 GCAGAGGACATGCTGATCTGT 60.134 52.381 15.21 0.00 40.59 3.41
4571 5072 2.823984 CAGAGGACATGCTGATCTGTC 58.176 52.381 4.62 4.62 40.82 3.51
4574 5075 3.748863 GACATGCTGATCTGTCCGT 57.251 52.632 0.00 0.00 36.59 4.69
4575 5076 1.565305 GACATGCTGATCTGTCCGTC 58.435 55.000 0.00 2.40 36.59 4.79
4576 5077 0.176680 ACATGCTGATCTGTCCGTCC 59.823 55.000 0.00 0.00 0.00 4.79
4577 5078 0.873312 CATGCTGATCTGTCCGTCCG 60.873 60.000 1.27 0.00 0.00 4.79
4578 5079 2.021068 ATGCTGATCTGTCCGTCCGG 62.021 60.000 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.672401 ATGCACTACCCGACGTTTGG 60.672 55.000 0.00 2.99 0.00 3.28
36 37 4.314121 TGTCATTTGGTTGCCTTTATTGC 58.686 39.130 0.00 0.00 0.00 3.56
40 41 7.278875 AGAAAAATGTCATTTGGTTGCCTTTA 58.721 30.769 11.54 0.00 31.77 1.85
41 42 6.121590 AGAAAAATGTCATTTGGTTGCCTTT 58.878 32.000 11.54 0.00 31.77 3.11
42 43 5.683681 AGAAAAATGTCATTTGGTTGCCTT 58.316 33.333 11.54 0.68 31.77 4.35
55 56 4.906618 TGGTACTCTGGGAGAAAAATGTC 58.093 43.478 1.31 0.00 33.32 3.06
56 57 4.993705 TGGTACTCTGGGAGAAAAATGT 57.006 40.909 1.31 0.00 33.32 2.71
65 66 3.516586 TGACTTTCATGGTACTCTGGGA 58.483 45.455 0.00 0.00 0.00 4.37
66 67 3.981071 TGACTTTCATGGTACTCTGGG 57.019 47.619 0.00 0.00 0.00 4.45
67 68 4.446371 GGATGACTTTCATGGTACTCTGG 58.554 47.826 0.00 0.00 37.20 3.86
68 69 4.163078 AGGGATGACTTTCATGGTACTCTG 59.837 45.833 0.00 0.00 37.20 3.35
69 70 4.366267 AGGGATGACTTTCATGGTACTCT 58.634 43.478 0.00 0.00 37.20 3.24
100 101 8.349245 TCCTTTGTGTTATGTTCATGTGTAAAG 58.651 33.333 0.00 0.00 0.00 1.85
119 120 2.237392 GAGACCTAGCCACATCCTTTGT 59.763 50.000 0.00 0.00 39.91 2.83
120 121 2.237143 TGAGACCTAGCCACATCCTTTG 59.763 50.000 0.00 0.00 0.00 2.77
121 122 2.503356 CTGAGACCTAGCCACATCCTTT 59.497 50.000 0.00 0.00 0.00 3.11
122 123 2.114616 CTGAGACCTAGCCACATCCTT 58.885 52.381 0.00 0.00 0.00 3.36
123 124 1.007721 ACTGAGACCTAGCCACATCCT 59.992 52.381 0.00 0.00 0.00 3.24
124 125 1.410882 GACTGAGACCTAGCCACATCC 59.589 57.143 0.00 0.00 0.00 3.51
125 126 1.066303 CGACTGAGACCTAGCCACATC 59.934 57.143 0.00 0.00 0.00 3.06
126 127 1.107114 CGACTGAGACCTAGCCACAT 58.893 55.000 0.00 0.00 0.00 3.21
127 128 0.037734 TCGACTGAGACCTAGCCACA 59.962 55.000 0.00 0.00 0.00 4.17
128 129 0.452585 GTCGACTGAGACCTAGCCAC 59.547 60.000 8.70 0.00 35.22 5.01
129 130 0.328592 AGTCGACTGAGACCTAGCCA 59.671 55.000 19.30 0.00 41.83 4.75
130 131 0.736053 CAGTCGACTGAGACCTAGCC 59.264 60.000 36.73 0.00 46.59 3.93
139 140 6.438740 ACTTGGTTAAGTCTCAGTCGACTGA 61.439 44.000 38.24 38.24 45.53 3.41
140 141 3.917329 TGGTTAAGTCTCAGTCGACTG 57.083 47.619 34.76 34.76 43.14 3.51
141 142 3.890147 ACTTGGTTAAGTCTCAGTCGACT 59.110 43.478 13.58 13.58 43.53 4.18
142 143 4.240175 ACTTGGTTAAGTCTCAGTCGAC 57.760 45.455 7.70 7.70 43.53 4.20
153 154 8.378172 TGTCACTTGATTTAGACTTGGTTAAG 57.622 34.615 0.00 0.00 39.86 1.85
154 155 8.918202 ATGTCACTTGATTTAGACTTGGTTAA 57.082 30.769 0.00 0.00 32.41 2.01
156 157 8.784043 GTTATGTCACTTGATTTAGACTTGGTT 58.216 33.333 0.00 0.00 32.41 3.67
157 158 7.936847 TGTTATGTCACTTGATTTAGACTTGGT 59.063 33.333 0.00 0.00 32.41 3.67
158 159 8.322906 TGTTATGTCACTTGATTTAGACTTGG 57.677 34.615 0.00 0.00 32.41 3.61
159 160 9.764870 CATGTTATGTCACTTGATTTAGACTTG 57.235 33.333 0.00 0.00 32.41 3.16
160 161 8.454106 GCATGTTATGTCACTTGATTTAGACTT 58.546 33.333 0.00 0.00 32.41 3.01
161 162 7.607607 TGCATGTTATGTCACTTGATTTAGACT 59.392 33.333 0.00 0.00 32.41 3.24
162 163 7.751732 TGCATGTTATGTCACTTGATTTAGAC 58.248 34.615 0.00 0.00 0.00 2.59
163 164 7.920160 TGCATGTTATGTCACTTGATTTAGA 57.080 32.000 0.00 0.00 0.00 2.10
164 165 8.453320 TCTTGCATGTTATGTCACTTGATTTAG 58.547 33.333 0.00 0.00 0.00 1.85
165 166 8.334263 TCTTGCATGTTATGTCACTTGATTTA 57.666 30.769 0.00 0.00 0.00 1.40
166 167 7.218228 TCTTGCATGTTATGTCACTTGATTT 57.782 32.000 0.00 0.00 0.00 2.17
167 168 6.822667 TCTTGCATGTTATGTCACTTGATT 57.177 33.333 0.00 0.00 0.00 2.57
168 169 6.822667 TTCTTGCATGTTATGTCACTTGAT 57.177 33.333 0.00 0.00 0.00 2.57
169 170 6.486320 TCTTTCTTGCATGTTATGTCACTTGA 59.514 34.615 0.00 0.00 0.00 3.02
170 171 6.671190 TCTTTCTTGCATGTTATGTCACTTG 58.329 36.000 0.00 0.00 0.00 3.16
171 172 6.882610 TCTTTCTTGCATGTTATGTCACTT 57.117 33.333 0.00 0.00 0.00 3.16
172 173 6.882610 TTCTTTCTTGCATGTTATGTCACT 57.117 33.333 0.00 0.00 0.00 3.41
173 174 7.928908 TTTTCTTTCTTGCATGTTATGTCAC 57.071 32.000 0.00 0.00 0.00 3.67
205 206 7.960195 CCGTGCACATTTTTCTTTTTAGTTTTT 59.040 29.630 18.64 0.00 0.00 1.94
206 207 7.332182 TCCGTGCACATTTTTCTTTTTAGTTTT 59.668 29.630 18.64 0.00 0.00 2.43
207 208 6.814146 TCCGTGCACATTTTTCTTTTTAGTTT 59.186 30.769 18.64 0.00 0.00 2.66
208 209 6.334202 TCCGTGCACATTTTTCTTTTTAGTT 58.666 32.000 18.64 0.00 0.00 2.24
209 210 5.897050 TCCGTGCACATTTTTCTTTTTAGT 58.103 33.333 18.64 0.00 0.00 2.24
210 211 6.863126 AGATCCGTGCACATTTTTCTTTTTAG 59.137 34.615 18.64 0.00 0.00 1.85
211 212 6.744112 AGATCCGTGCACATTTTTCTTTTTA 58.256 32.000 18.64 0.00 0.00 1.52
212 213 5.600696 AGATCCGTGCACATTTTTCTTTTT 58.399 33.333 18.64 0.00 0.00 1.94
213 214 5.200368 AGATCCGTGCACATTTTTCTTTT 57.800 34.783 18.64 0.00 0.00 2.27
214 215 4.321230 GGAGATCCGTGCACATTTTTCTTT 60.321 41.667 18.64 0.00 0.00 2.52
215 216 3.191371 GGAGATCCGTGCACATTTTTCTT 59.809 43.478 18.64 0.00 0.00 2.52
216 217 2.749621 GGAGATCCGTGCACATTTTTCT 59.250 45.455 18.64 10.69 0.00 2.52
217 218 2.487762 TGGAGATCCGTGCACATTTTTC 59.512 45.455 18.64 8.26 39.43 2.29
218 219 2.228822 GTGGAGATCCGTGCACATTTTT 59.771 45.455 18.64 0.00 38.57 1.94
219 220 1.812571 GTGGAGATCCGTGCACATTTT 59.187 47.619 18.64 0.00 38.57 1.82
220 221 1.453155 GTGGAGATCCGTGCACATTT 58.547 50.000 18.64 0.00 38.57 2.32
221 222 0.740868 CGTGGAGATCCGTGCACATT 60.741 55.000 18.64 0.00 38.62 2.71
222 223 1.153568 CGTGGAGATCCGTGCACAT 60.154 57.895 18.64 3.08 38.62 3.21
223 224 1.245376 TACGTGGAGATCCGTGCACA 61.245 55.000 18.64 0.00 38.62 4.57
224 225 0.108992 TTACGTGGAGATCCGTGCAC 60.109 55.000 6.82 6.82 37.91 4.57
225 226 0.172578 CTTACGTGGAGATCCGTGCA 59.827 55.000 0.00 0.00 37.91 4.57
226 227 0.454600 TCTTACGTGGAGATCCGTGC 59.545 55.000 0.00 0.00 37.91 5.34
227 228 2.357952 TGATCTTACGTGGAGATCCGTG 59.642 50.000 27.10 0.00 45.71 4.94
228 229 2.358267 GTGATCTTACGTGGAGATCCGT 59.642 50.000 27.10 7.47 45.71 4.69
229 230 2.357952 TGTGATCTTACGTGGAGATCCG 59.642 50.000 27.10 0.00 45.71 4.18
230 231 4.038042 TCATGTGATCTTACGTGGAGATCC 59.962 45.833 27.10 21.41 45.71 3.36
231 232 5.188327 TCATGTGATCTTACGTGGAGATC 57.812 43.478 25.13 25.13 46.21 2.75
232 233 5.598416 TTCATGTGATCTTACGTGGAGAT 57.402 39.130 13.95 13.95 37.98 2.75
233 234 5.598416 ATTCATGTGATCTTACGTGGAGA 57.402 39.130 0.00 1.57 37.98 3.71
234 235 8.300286 ACTATATTCATGTGATCTTACGTGGAG 58.700 37.037 0.00 0.00 37.98 3.86
235 236 8.178313 ACTATATTCATGTGATCTTACGTGGA 57.822 34.615 0.00 0.00 37.98 4.02
238 239 9.989869 CGATACTATATTCATGTGATCTTACGT 57.010 33.333 0.00 0.00 0.00 3.57
239 240 9.439537 CCGATACTATATTCATGTGATCTTACG 57.560 37.037 0.00 0.00 0.00 3.18
240 241 9.239002 GCCGATACTATATTCATGTGATCTTAC 57.761 37.037 0.00 0.00 0.00 2.34
241 242 9.190317 AGCCGATACTATATTCATGTGATCTTA 57.810 33.333 0.00 0.00 0.00 2.10
242 243 7.978414 CAGCCGATACTATATTCATGTGATCTT 59.022 37.037 0.00 0.00 0.00 2.40
243 244 7.340487 TCAGCCGATACTATATTCATGTGATCT 59.660 37.037 0.00 0.00 0.00 2.75
244 245 7.484140 TCAGCCGATACTATATTCATGTGATC 58.516 38.462 0.00 0.00 0.00 2.92
245 246 7.340487 TCTCAGCCGATACTATATTCATGTGAT 59.660 37.037 0.00 0.00 0.00 3.06
246 247 6.659242 TCTCAGCCGATACTATATTCATGTGA 59.341 38.462 0.00 0.00 0.00 3.58
247 248 6.749578 GTCTCAGCCGATACTATATTCATGTG 59.250 42.308 0.00 0.00 0.00 3.21
248 249 6.661377 AGTCTCAGCCGATACTATATTCATGT 59.339 38.462 0.00 0.00 27.41 3.21
249 250 7.094508 AGTCTCAGCCGATACTATATTCATG 57.905 40.000 0.00 0.00 27.41 3.07
250 251 7.363355 CCAAGTCTCAGCCGATACTATATTCAT 60.363 40.741 0.00 0.00 29.03 2.57
251 252 6.071896 CCAAGTCTCAGCCGATACTATATTCA 60.072 42.308 0.00 0.00 29.03 2.57
252 253 6.071840 ACCAAGTCTCAGCCGATACTATATTC 60.072 42.308 0.00 0.00 29.03 1.75
253 254 5.775701 ACCAAGTCTCAGCCGATACTATATT 59.224 40.000 0.00 0.00 29.03 1.28
254 255 5.326069 ACCAAGTCTCAGCCGATACTATAT 58.674 41.667 0.00 0.00 29.03 0.86
255 256 4.726583 ACCAAGTCTCAGCCGATACTATA 58.273 43.478 0.00 0.00 29.03 1.31
256 257 3.567397 ACCAAGTCTCAGCCGATACTAT 58.433 45.455 0.00 0.00 29.03 2.12
257 258 3.014304 ACCAAGTCTCAGCCGATACTA 57.986 47.619 0.00 0.00 29.03 1.82
258 259 1.853963 ACCAAGTCTCAGCCGATACT 58.146 50.000 0.00 0.00 30.27 2.12
259 260 2.674796 AACCAAGTCTCAGCCGATAC 57.325 50.000 0.00 0.00 0.00 2.24
260 261 4.811969 TTTAACCAAGTCTCAGCCGATA 57.188 40.909 0.00 0.00 0.00 2.92
261 262 3.695830 TTTAACCAAGTCTCAGCCGAT 57.304 42.857 0.00 0.00 0.00 4.18
262 263 3.260884 AGATTTAACCAAGTCTCAGCCGA 59.739 43.478 0.00 0.00 0.00 5.54
263 264 3.600388 AGATTTAACCAAGTCTCAGCCG 58.400 45.455 0.00 0.00 0.00 5.52
264 265 6.174049 ACTAAGATTTAACCAAGTCTCAGCC 58.826 40.000 0.00 0.00 30.05 4.85
265 266 6.035112 CGACTAAGATTTAACCAAGTCTCAGC 59.965 42.308 0.00 0.00 30.05 4.26
266 267 7.273815 GTCGACTAAGATTTAACCAAGTCTCAG 59.726 40.741 8.70 0.00 30.05 3.35
267 268 7.039923 AGTCGACTAAGATTTAACCAAGTCTCA 60.040 37.037 18.46 0.00 30.05 3.27
268 269 7.314393 AGTCGACTAAGATTTAACCAAGTCTC 58.686 38.462 18.46 0.00 30.05 3.36
269 270 7.229581 AGTCGACTAAGATTTAACCAAGTCT 57.770 36.000 18.46 0.00 32.49 3.24
270 271 8.976986 TTAGTCGACTAAGATTTAACCAAGTC 57.023 34.615 29.57 0.00 33.83 3.01
284 285 9.069078 CGTGATTGTTAAATCTTAGTCGACTAA 57.931 33.333 30.65 30.65 42.40 2.24
285 286 8.239314 ACGTGATTGTTAAATCTTAGTCGACTA 58.761 33.333 21.25 21.25 42.40 2.59
286 287 7.088905 ACGTGATTGTTAAATCTTAGTCGACT 58.911 34.615 23.66 23.66 42.40 4.18
287 288 7.274442 ACGTGATTGTTAAATCTTAGTCGAC 57.726 36.000 7.70 7.70 42.40 4.20
288 289 8.853345 GTTACGTGATTGTTAAATCTTAGTCGA 58.147 33.333 0.00 0.00 42.40 4.20
289 290 8.641155 TGTTACGTGATTGTTAAATCTTAGTCG 58.359 33.333 0.00 0.00 42.40 4.18
290 291 9.737025 GTGTTACGTGATTGTTAAATCTTAGTC 57.263 33.333 0.00 0.00 42.40 2.59
291 292 9.263538 TGTGTTACGTGATTGTTAAATCTTAGT 57.736 29.630 0.00 1.38 42.40 2.24
294 295 9.790389 TTTTGTGTTACGTGATTGTTAAATCTT 57.210 25.926 0.00 0.00 42.40 2.40
295 296 9.228636 GTTTTGTGTTACGTGATTGTTAAATCT 57.771 29.630 0.00 0.00 42.40 2.40
296 297 8.473796 GGTTTTGTGTTACGTGATTGTTAAATC 58.526 33.333 0.00 0.00 42.28 2.17
297 298 7.974501 TGGTTTTGTGTTACGTGATTGTTAAAT 59.025 29.630 0.00 0.00 0.00 1.40
298 299 7.310664 TGGTTTTGTGTTACGTGATTGTTAAA 58.689 30.769 0.00 0.00 0.00 1.52
299 300 6.849502 TGGTTTTGTGTTACGTGATTGTTAA 58.150 32.000 0.00 0.00 0.00 2.01
300 301 6.432607 TGGTTTTGTGTTACGTGATTGTTA 57.567 33.333 0.00 0.00 0.00 2.41
301 302 5.312120 TGGTTTTGTGTTACGTGATTGTT 57.688 34.783 0.00 0.00 0.00 2.83
302 303 4.966965 TGGTTTTGTGTTACGTGATTGT 57.033 36.364 0.00 0.00 0.00 2.71
303 304 8.423973 CAAATATGGTTTTGTGTTACGTGATTG 58.576 33.333 0.00 0.00 32.99 2.67
304 305 8.138712 ACAAATATGGTTTTGTGTTACGTGATT 58.861 29.630 0.00 0.00 45.55 2.57
305 306 7.653647 ACAAATATGGTTTTGTGTTACGTGAT 58.346 30.769 0.00 0.00 45.55 3.06
306 307 7.028926 ACAAATATGGTTTTGTGTTACGTGA 57.971 32.000 0.00 0.00 45.55 4.35
307 308 7.687005 AACAAATATGGTTTTGTGTTACGTG 57.313 32.000 0.00 0.00 46.33 4.49
308 309 8.404000 TGTAACAAATATGGTTTTGTGTTACGT 58.596 29.630 15.69 0.00 46.33 3.57
309 310 8.783999 TGTAACAAATATGGTTTTGTGTTACG 57.216 30.769 15.69 0.00 46.33 3.18
356 357 8.374743 ACCCGAATTTAAAAAGGTACTACTGTA 58.625 33.333 0.00 0.00 38.49 2.74
357 358 7.226441 ACCCGAATTTAAAAAGGTACTACTGT 58.774 34.615 0.00 0.00 38.49 3.55
358 359 7.677454 ACCCGAATTTAAAAAGGTACTACTG 57.323 36.000 0.00 0.00 38.49 2.74
359 360 8.374743 TGTACCCGAATTTAAAAAGGTACTACT 58.625 33.333 24.61 0.00 46.39 2.57
360 361 8.546597 TGTACCCGAATTTAAAAAGGTACTAC 57.453 34.615 24.61 12.80 46.39 2.73
361 362 9.165035 CATGTACCCGAATTTAAAAAGGTACTA 57.835 33.333 24.61 17.36 46.39 1.82
368 369 5.921408 GTGCACATGTACCCGAATTTAAAAA 59.079 36.000 13.17 0.00 0.00 1.94
372 373 3.011119 GGTGCACATGTACCCGAATTTA 58.989 45.455 20.43 0.00 43.79 1.40
376 377 4.705746 GGTGCACATGTACCCGAA 57.294 55.556 20.43 0.00 43.79 4.30
400 404 1.066716 ACATGGCATGTTGACCAATGC 60.067 47.619 26.78 0.00 41.63 3.56
411 415 3.761218 TGTGGGTTACTAAACATGGCATG 59.239 43.478 25.31 25.31 37.34 4.06
420 424 6.607019 ACAGGATCTTTTGTGGGTTACTAAA 58.393 36.000 0.00 0.00 33.90 1.85
424 428 4.394729 TGACAGGATCTTTTGTGGGTTAC 58.605 43.478 0.00 0.00 0.00 2.50
437 441 1.063174 GCAATGCGTCTTGACAGGATC 59.937 52.381 0.00 0.00 0.00 3.36
448 452 2.778679 GAGACGGTGCAATGCGTC 59.221 61.111 0.00 2.01 0.00 5.19
463 467 2.432510 AGGTTTAGGGAGAGAATGCGAG 59.567 50.000 0.00 0.00 0.00 5.03
466 470 3.914426 TGAGGTTTAGGGAGAGAATGC 57.086 47.619 0.00 0.00 0.00 3.56
482 486 7.488322 TGAACAAGAAAGGTAAACAATTGAGG 58.512 34.615 13.59 0.00 0.00 3.86
494 498 7.939784 ACTAGACTTTTTGAACAAGAAAGGT 57.060 32.000 0.00 6.73 35.30 3.50
495 499 9.076596 CAAACTAGACTTTTTGAACAAGAAAGG 57.923 33.333 0.00 4.51 35.13 3.11
514 518 7.385478 GGAGAGTTAGAAGGACAAACAAACTAG 59.615 40.741 0.00 0.00 0.00 2.57
528 532 6.361433 TGATACAGGAGAGGAGAGTTAGAAG 58.639 44.000 0.00 0.00 0.00 2.85
541 548 6.655003 GGAAATGTTGACTTTGATACAGGAGA 59.345 38.462 0.00 0.00 0.00 3.71
549 556 5.010012 GTGGTGAGGAAATGTTGACTTTGAT 59.990 40.000 0.00 0.00 0.00 2.57
551 558 4.499696 GGTGGTGAGGAAATGTTGACTTTG 60.500 45.833 0.00 0.00 0.00 2.77
637 644 2.038813 TGCATGGTCTCCCCGAGA 59.961 61.111 0.00 0.00 36.22 4.04
638 645 2.187946 GTGCATGGTCTCCCCGAG 59.812 66.667 0.00 0.00 35.15 4.63
639 646 3.770040 CGTGCATGGTCTCCCCGA 61.770 66.667 0.00 0.00 35.15 5.14
816 841 1.192803 AGACTTTGTCCGGGGAGTCC 61.193 60.000 17.71 0.00 39.39 3.85
817 842 0.685660 AAGACTTTGTCCGGGGAGTC 59.314 55.000 0.00 10.21 38.98 3.36
818 843 2.019807 TAAGACTTTGTCCGGGGAGT 57.980 50.000 0.00 0.04 32.18 3.85
819 844 2.614734 GGTTAAGACTTTGTCCGGGGAG 60.615 54.545 0.00 0.00 32.18 4.30
820 845 1.348696 GGTTAAGACTTTGTCCGGGGA 59.651 52.381 0.00 0.00 32.18 4.81
908 935 1.067364 GGCGAGCTTAAGTAGGAGGAC 59.933 57.143 4.02 0.00 0.00 3.85
931 958 2.230892 CGTAAAGGCAAGACACGCA 58.769 52.632 0.00 0.00 0.00 5.24
941 969 1.078708 TGGCTACTGGCGTAAAGGC 60.079 57.895 0.00 0.00 46.95 4.35
971 999 4.135153 CTACGCGGCACTCCTGCT 62.135 66.667 12.47 0.00 43.66 4.24
972 1000 4.436998 ACTACGCGGCACTCCTGC 62.437 66.667 12.47 0.00 43.41 4.85
973 1001 2.507102 CACTACGCGGCACTCCTG 60.507 66.667 12.47 0.00 0.00 3.86
987 1015 1.599071 GCATGCATGTATGTACGCACT 59.401 47.619 26.79 0.00 37.17 4.40
990 1018 0.943673 TGGCATGCATGTATGTACGC 59.056 50.000 26.79 10.49 0.00 4.42
993 1021 1.887854 GCCATGGCATGCATGTATGTA 59.112 47.619 32.08 13.73 41.49 2.29
997 1025 2.847754 GCGCCATGGCATGCATGTA 61.848 57.895 34.93 16.96 42.06 2.29
1209 1237 1.602377 GCATTATTGTCACCTACGCCC 59.398 52.381 0.00 0.00 0.00 6.13
1215 1243 1.681780 CCACCCGCATTATTGTCACCT 60.682 52.381 0.00 0.00 0.00 4.00
1218 1246 1.372838 CGCCACCCGCATTATTGTCA 61.373 55.000 0.00 0.00 37.30 3.58
1223 1251 2.111043 CCTCGCCACCCGCATTAT 59.889 61.111 0.00 0.00 37.30 1.28
2016 2047 2.338620 CCGCTGAAGACGGTGTGA 59.661 61.111 0.00 0.00 45.70 3.58
2241 2293 3.207669 GCGCTGATGGCCTCCTTG 61.208 66.667 3.32 0.00 37.74 3.61
2391 2467 4.704833 AACAGCTCCGGCATGCGT 62.705 61.111 12.44 0.00 41.70 5.24
2556 2632 0.838122 CCTGGAGGAACACTGGGAGT 60.838 60.000 0.00 0.00 37.39 3.85
2562 2638 2.286523 CCGCTCCTGGAGGAACACT 61.287 63.158 24.43 0.00 44.91 3.55
2928 3004 1.045407 ACTTGACCAGCGACAGGTAA 58.955 50.000 0.00 0.00 40.09 2.85
3323 3417 3.526931 TCATGTCATCGTCTTCTTCCC 57.473 47.619 0.00 0.00 0.00 3.97
3333 3427 4.378149 GGCATCTGCTTAATCATGTCATCG 60.378 45.833 1.70 0.00 41.70 3.84
3364 3458 6.015095 ACAATTGCAGAGACCGATAGATGATA 60.015 38.462 5.05 0.00 39.76 2.15
3365 3459 5.221601 ACAATTGCAGAGACCGATAGATGAT 60.222 40.000 5.05 0.00 39.76 2.45
3391 3485 5.429957 AGAAGTCAAAAGCACATCTGTTC 57.570 39.130 0.00 0.00 0.00 3.18
3419 3513 6.699575 TCACAAGGAGAAGAAAAGAAAAGG 57.300 37.500 0.00 0.00 0.00 3.11
3424 3519 6.096705 TGCAAAATCACAAGGAGAAGAAAAGA 59.903 34.615 0.00 0.00 0.00 2.52
3475 3570 7.879677 CAGTGGATAGGAAAGCATATGTATGAA 59.120 37.037 4.29 0.00 35.75 2.57
3477 3572 6.093219 GCAGTGGATAGGAAAGCATATGTATG 59.907 42.308 4.29 0.00 36.78 2.39
3478 3573 6.176183 GCAGTGGATAGGAAAGCATATGTAT 58.824 40.000 4.29 0.00 0.00 2.29
3514 3609 4.151883 AGGCTACAACACACATGGAAAAT 58.848 39.130 0.00 0.00 0.00 1.82
3519 3614 2.229792 ACAAGGCTACAACACACATGG 58.770 47.619 0.00 0.00 0.00 3.66
3523 3618 3.064931 GGTCTACAAGGCTACAACACAC 58.935 50.000 0.00 0.00 0.00 3.82
3524 3619 2.969950 AGGTCTACAAGGCTACAACACA 59.030 45.455 0.00 0.00 0.00 3.72
3525 3620 3.244112 ACAGGTCTACAAGGCTACAACAC 60.244 47.826 0.00 0.00 0.00 3.32
3526 3621 2.969950 ACAGGTCTACAAGGCTACAACA 59.030 45.455 0.00 0.00 0.00 3.33
3527 3622 3.006537 TCACAGGTCTACAAGGCTACAAC 59.993 47.826 0.00 0.00 0.00 3.32
3529 3624 2.884320 TCACAGGTCTACAAGGCTACA 58.116 47.619 0.00 0.00 0.00 2.74
3530 3625 3.955650 TTCACAGGTCTACAAGGCTAC 57.044 47.619 0.00 0.00 0.00 3.58
3531 3626 4.530553 TCATTTCACAGGTCTACAAGGCTA 59.469 41.667 0.00 0.00 0.00 3.93
3533 3628 3.674997 TCATTTCACAGGTCTACAAGGC 58.325 45.455 0.00 0.00 0.00 4.35
3534 3629 5.308825 ACTTCATTTCACAGGTCTACAAGG 58.691 41.667 0.00 0.00 0.00 3.61
3535 3630 8.553459 AATACTTCATTTCACAGGTCTACAAG 57.447 34.615 0.00 0.00 0.00 3.16
3599 3694 3.414549 TCAGACTGCGTTTGTTTTTCC 57.585 42.857 0.00 0.00 0.00 3.13
3614 3709 2.029649 ACCATGTTGCTTTGCATCAGAC 60.030 45.455 8.84 0.00 40.75 3.51
3641 3736 2.910688 AAGTGATCGACCACAACACT 57.089 45.000 13.61 6.98 42.40 3.55
3657 3752 3.493873 GGCGGGAGAAACGGATAATAAGT 60.494 47.826 0.00 0.00 0.00 2.24
3659 3754 2.701951 AGGCGGGAGAAACGGATAATAA 59.298 45.455 0.00 0.00 0.00 1.40
3660 3755 2.298163 GAGGCGGGAGAAACGGATAATA 59.702 50.000 0.00 0.00 0.00 0.98
3661 3756 1.070289 GAGGCGGGAGAAACGGATAAT 59.930 52.381 0.00 0.00 0.00 1.28
3679 3774 4.158394 CCACATCCCACCAAATAAAGTGAG 59.842 45.833 0.00 0.00 36.01 3.51
3718 3813 0.248580 CAACACGGCGCATGCATTAT 60.249 50.000 19.57 0.00 45.35 1.28
3769 3866 8.653338 TGCTTTATTCGTTTCAGTGTCTATAAC 58.347 33.333 0.00 0.00 0.00 1.89
3826 3923 1.732259 GGTAACATGAGAACGGCACAG 59.268 52.381 0.00 0.00 0.00 3.66
3846 3943 9.162764 CGGTTAGGAACATAATAAAGGGATATG 57.837 37.037 0.00 0.00 34.08 1.78
3866 3964 3.738282 GCTAGCATCTGATGTTCGGTTAG 59.262 47.826 18.19 7.93 0.00 2.34
3876 3974 9.511272 TTTCATGTTAATATGCTAGCATCTGAT 57.489 29.630 32.76 18.58 37.82 2.90
3884 3982 9.373750 CGTGACATTTTCATGTTAATATGCTAG 57.626 33.333 7.29 0.00 44.22 3.42
3905 4041 1.394917 CACATGAAAGCTAGCCGTGAC 59.605 52.381 12.13 0.00 0.00 3.67
3919 4055 6.398095 CAGTCTCTGTTATACCAACACATGA 58.602 40.000 0.00 0.00 0.00 3.07
3925 4061 4.820894 ACCCAGTCTCTGTTATACCAAC 57.179 45.455 0.00 0.00 0.00 3.77
3926 4062 6.258354 TCTAACCCAGTCTCTGTTATACCAA 58.742 40.000 0.00 0.00 0.00 3.67
3927 4063 5.834460 TCTAACCCAGTCTCTGTTATACCA 58.166 41.667 0.00 0.00 0.00 3.25
3928 4064 6.980416 ATCTAACCCAGTCTCTGTTATACC 57.020 41.667 0.00 0.00 0.00 2.73
3929 4065 7.943447 TCCTATCTAACCCAGTCTCTGTTATAC 59.057 40.741 0.00 0.00 0.00 1.47
3970 4106 0.991920 ACCCAAACCCATGTCTCGAT 59.008 50.000 0.00 0.00 0.00 3.59
3971 4107 0.768622 AACCCAAACCCATGTCTCGA 59.231 50.000 0.00 0.00 0.00 4.04
3972 4108 0.881118 CAACCCAAACCCATGTCTCG 59.119 55.000 0.00 0.00 0.00 4.04
3973 4109 1.256812 CCAACCCAAACCCATGTCTC 58.743 55.000 0.00 0.00 0.00 3.36
3986 4122 0.702316 ACCTAACCATCACCCAACCC 59.298 55.000 0.00 0.00 0.00 4.11
4027 4163 3.490759 CGCCGATGCAGGTGTGAC 61.491 66.667 0.00 0.00 37.04 3.67
4028 4164 4.758251 CCGCCGATGCAGGTGTGA 62.758 66.667 4.97 0.00 40.04 3.58
4041 4177 2.551912 CCATTCATTACGGCCCGCC 61.552 63.158 1.23 0.00 0.00 6.13
4042 4178 3.030652 CCATTCATTACGGCCCGC 58.969 61.111 1.23 0.00 0.00 6.13
4047 4183 0.937304 CTCGTGGCCATTCATTACGG 59.063 55.000 9.72 0.00 35.63 4.02
4059 4195 2.092882 GCGTACCTTGTCTCGTGGC 61.093 63.158 0.00 0.00 0.00 5.01
4071 4565 2.882301 CGTAAGCCGGTGCGTACC 60.882 66.667 13.35 13.35 45.90 3.34
4081 4575 1.448013 GTGGGAGAGCACGTAAGCC 60.448 63.158 0.00 0.00 45.62 4.35
4098 4593 0.382515 GCAGTATCGGAGAAGCGAGT 59.617 55.000 0.00 0.00 43.58 4.18
4099 4594 0.382158 TGCAGTATCGGAGAAGCGAG 59.618 55.000 0.00 0.00 43.58 5.03
4127 4622 4.339247 AGCAAAGCAAAGCAGAGACTTTTA 59.661 37.500 0.00 0.00 37.78 1.52
4141 4641 1.299316 GCTCGCACAAGCAAAGCAA 60.299 52.632 6.88 0.00 44.35 3.91
4156 4656 2.959071 GTCCGATCAGCTGCGCTC 60.959 66.667 9.47 4.79 36.40 5.03
4159 4659 0.938637 GAGATGTCCGATCAGCTGCG 60.939 60.000 9.47 7.88 34.10 5.18
4163 4663 1.000385 CCAGAGAGATGTCCGATCAGC 60.000 57.143 0.00 0.00 0.00 4.26
4170 4670 3.888930 CCTCTAGAACCAGAGAGATGTCC 59.111 52.174 1.71 0.00 44.11 4.02
4238 4738 4.336581 GCCCAAGCGAAACCAAAC 57.663 55.556 0.00 0.00 0.00 2.93
4253 4753 2.874849 CCAATCAACAATGGTTACGCC 58.125 47.619 0.00 0.00 34.87 5.68
4303 4803 5.185828 GGGAAATGTTTCAAGGAAGCTGTAT 59.814 40.000 7.69 0.00 38.92 2.29
4304 4804 4.522789 GGGAAATGTTTCAAGGAAGCTGTA 59.477 41.667 7.69 0.00 38.92 2.74
4305 4805 3.321968 GGGAAATGTTTCAAGGAAGCTGT 59.678 43.478 7.69 0.00 38.92 4.40
4306 4806 3.612479 CGGGAAATGTTTCAAGGAAGCTG 60.612 47.826 7.69 0.00 38.92 4.24
4307 4807 2.558359 CGGGAAATGTTTCAAGGAAGCT 59.442 45.455 7.69 0.00 38.92 3.74
4308 4808 2.296190 ACGGGAAATGTTTCAAGGAAGC 59.704 45.455 7.69 0.00 38.92 3.86
4358 4858 3.666274 TGTTTCGGTACTGGGTACATTG 58.334 45.455 0.85 0.57 40.41 2.82
4387 4888 5.186021 ACAAGTGATAGTAGGAGGTGTTGAG 59.814 44.000 0.00 0.00 0.00 3.02
4407 4908 7.489160 TGGCACATACTCTTACTACATACAAG 58.511 38.462 0.00 0.00 0.00 3.16
4409 4910 6.605995 ACTGGCACATACTCTTACTACATACA 59.394 38.462 0.00 0.00 38.20 2.29
4413 4914 5.067413 GCTACTGGCACATACTCTTACTACA 59.933 44.000 0.00 0.00 38.20 2.74
4414 4915 5.521544 GCTACTGGCACATACTCTTACTAC 58.478 45.833 0.00 0.00 38.20 2.73
4415 4916 4.275196 CGCTACTGGCACATACTCTTACTA 59.725 45.833 0.00 0.00 41.91 1.82
4416 4917 3.066900 CGCTACTGGCACATACTCTTACT 59.933 47.826 0.00 0.00 41.91 2.24
4417 4918 3.372954 CGCTACTGGCACATACTCTTAC 58.627 50.000 0.00 0.00 41.91 2.34
4418 4919 2.361119 CCGCTACTGGCACATACTCTTA 59.639 50.000 0.00 0.00 41.91 2.10
4419 4920 1.137086 CCGCTACTGGCACATACTCTT 59.863 52.381 0.00 0.00 41.91 2.85
4420 4921 0.747255 CCGCTACTGGCACATACTCT 59.253 55.000 0.00 0.00 41.91 3.24
4421 4922 3.274393 CCGCTACTGGCACATACTC 57.726 57.895 0.00 0.00 41.91 2.59
4431 4932 0.093026 CGAAAAACGAGCCGCTACTG 59.907 55.000 0.00 0.00 45.77 2.74
4435 4936 3.723348 GCCGAAAAACGAGCCGCT 61.723 61.111 0.00 0.00 45.77 5.52
4446 4947 1.957186 CGTCCGTTCCAAGCCGAAA 60.957 57.895 0.00 0.00 0.00 3.46
4472 4973 0.745845 CCTCTGGAATGGCTCGGTTG 60.746 60.000 0.00 0.00 0.00 3.77
4485 4986 1.211212 TCATCATGGTGCTTCCTCTGG 59.789 52.381 0.00 0.00 37.07 3.86
4501 5002 1.338337 ACTCGGACGACCATGATCATC 59.662 52.381 4.86 0.00 35.59 2.92
4527 5028 1.000145 GAATCTTCTTGCCCGACGAC 59.000 55.000 0.00 0.00 0.00 4.34
4533 5034 2.121538 GCCGGGAATCTTCTTGCCC 61.122 63.158 2.18 0.00 37.21 5.36
4539 5040 0.179070 GTCCTCTGCCGGGAATCTTC 60.179 60.000 2.18 0.00 34.35 2.87
4557 5058 0.176680 GGACGGACAGATCAGCATGT 59.823 55.000 0.00 0.00 37.40 3.21
4558 5059 0.873312 CGGACGGACAGATCAGCATG 60.873 60.000 0.00 0.00 37.54 4.06
4559 5060 1.439228 CGGACGGACAGATCAGCAT 59.561 57.895 0.00 0.00 0.00 3.79
4560 5061 2.710902 CCGGACGGACAGATCAGCA 61.711 63.158 4.40 0.00 37.50 4.41
4561 5062 2.105128 CCGGACGGACAGATCAGC 59.895 66.667 4.40 0.00 37.50 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.