Multiple sequence alignment - TraesCS3A01G354200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G354200 chr3A 100.000 6203 0 0 1 6203 601561796 601555594 0.000000e+00 11455.0
1 TraesCS3A01G354200 chr3A 77.447 705 124 18 4179 4867 697749012 697748327 7.540000e-104 388.0
2 TraesCS3A01G354200 chr3A 81.119 286 34 11 4924 5193 697748176 697747895 1.750000e-50 211.0
3 TraesCS3A01G354200 chr3A 80.070 286 46 10 52 331 726850752 726850472 1.050000e-47 202.0
4 TraesCS3A01G354200 chr3A 88.776 98 8 3 1308 1405 697751477 697751383 3.930000e-22 117.0
5 TraesCS3A01G354200 chr3A 100.000 34 0 0 5635 5668 601556360 601556327 5.190000e-06 63.9
6 TraesCS3A01G354200 chr3B 94.402 4734 147 42 1530 6203 607380639 607385314 0.000000e+00 7166.0
7 TraesCS3A01G354200 chr3B 90.199 1153 59 14 385 1501 607379503 607380637 0.000000e+00 1454.0
8 TraesCS3A01G354200 chr3B 77.208 1053 171 35 4191 5193 750207916 750206883 9.090000e-153 551.0
9 TraesCS3A01G354200 chr3B 100.000 34 0 0 5635 5668 607384548 607384581 5.190000e-06 63.9
10 TraesCS3A01G354200 chr3D 93.509 4745 169 47 394 5056 459462693 459467380 0.000000e+00 6927.0
11 TraesCS3A01G354200 chr3D 97.225 1153 30 1 5053 6203 459467451 459468603 0.000000e+00 1951.0
12 TraesCS3A01G354200 chr3D 83.265 245 35 5 41 280 550385577 550385334 2.910000e-53 220.0
13 TraesCS3A01G354200 chr3D 100.000 34 0 0 5437 5470 459468035 459468068 5.190000e-06 63.9
14 TraesCS3A01G354200 chr3D 97.059 34 1 0 5635 5668 459467837 459467870 2.420000e-04 58.4
15 TraesCS3A01G354200 chr6D 79.285 1091 129 50 5164 6203 24230163 24231207 0.000000e+00 673.0
16 TraesCS3A01G354200 chr6D 85.644 202 24 2 5064 5260 24229960 24230161 2.270000e-49 207.0
17 TraesCS3A01G354200 chr6D 82.432 148 17 2 5405 5552 24261743 24261881 3.040000e-23 121.0
18 TraesCS3A01G354200 chr6D 89.744 78 6 2 4793 4869 24229733 24229809 1.420000e-16 99.0
19 TraesCS3A01G354200 chr6D 100.000 29 0 0 5635 5663 24261775 24261803 3.000000e-03 54.7
20 TraesCS3A01G354200 chr6A 88.598 535 55 2 5669 6203 22803747 22804275 0.000000e+00 645.0
21 TraesCS3A01G354200 chr6A 88.592 412 47 0 5792 6203 22695844 22696255 9.280000e-138 501.0
22 TraesCS3A01G354200 chr6A 79.327 416 45 17 5164 5550 22695232 22695635 2.870000e-63 254.0
23 TraesCS3A01G354200 chr6A 79.444 360 46 16 4913 5260 22694887 22695230 4.840000e-56 230.0
24 TraesCS3A01G354200 chr6A 79.147 211 32 9 2813 3017 204743043 204742839 1.080000e-27 135.0
25 TraesCS3A01G354200 chr6A 89.796 98 10 0 5669 5766 22695748 22695845 6.530000e-25 126.0
26 TraesCS3A01G354200 chr6A 81.757 148 18 2 5405 5552 22803498 22803636 1.410000e-21 115.0
27 TraesCS3A01G354200 chr6A 94.444 36 1 1 5635 5670 22695531 22695565 3.000000e-03 54.7
28 TraesCS3A01G354200 chr6A 100.000 29 0 0 5635 5663 22803530 22803558 3.000000e-03 54.7
29 TraesCS3A01G354200 chr6B 87.970 532 61 3 5669 6200 39339160 39339688 5.280000e-175 625.0
30 TraesCS3A01G354200 chr6B 87.530 417 51 1 5788 6203 39198452 39198868 1.210000e-131 481.0
31 TraesCS3A01G354200 chr6B 78.641 412 48 19 5166 5550 39197850 39198248 2.890000e-58 237.0
32 TraesCS3A01G354200 chr6B 84.158 202 27 2 5064 5260 39197644 39197845 2.280000e-44 191.0
33 TraesCS3A01G354200 chr6B 80.469 256 38 10 53 301 113845761 113846011 1.060000e-42 185.0
34 TraesCS3A01G354200 chr6B 82.000 150 14 5 5405 5552 39338911 39339049 1.410000e-21 115.0
35 TraesCS3A01G354200 chr6B 94.444 36 1 1 5635 5670 39198144 39198178 3.000000e-03 54.7
36 TraesCS3A01G354200 chr5A 85.688 538 66 6 5669 6203 465111740 465111211 1.950000e-154 556.0
37 TraesCS3A01G354200 chr5A 81.435 237 39 5 53 286 683276152 683276386 8.210000e-44 189.0
38 TraesCS3A01G354200 chr5A 79.630 270 47 7 2745 3010 427067780 427068045 2.950000e-43 187.0
39 TraesCS3A01G354200 chr5A 79.253 241 43 6 2841 3076 666232890 666232652 1.790000e-35 161.0
40 TraesCS3A01G354200 chr5A 91.837 49 4 0 2445 2493 510543746 510543698 1.120000e-07 69.4
41 TraesCS3A01G354200 chr7B 83.004 253 35 7 54 301 743399140 743398891 8.090000e-54 222.0
42 TraesCS3A01G354200 chr7B 100.000 28 0 0 5328 5355 47335390 47335417 1.100000e-02 52.8
43 TraesCS3A01G354200 chr7B 100.000 28 0 0 5328 5355 47595189 47595216 1.100000e-02 52.8
44 TraesCS3A01G354200 chr2B 81.008 258 35 14 53 301 219294345 219294597 6.350000e-45 193.0
45 TraesCS3A01G354200 chr4A 80.469 256 42 7 53 303 621419775 621420027 8.210000e-44 189.0
46 TraesCS3A01G354200 chr7A 78.571 294 50 10 52 337 46243588 46243876 1.370000e-41 182.0
47 TraesCS3A01G354200 chr5D 83.333 204 26 7 2811 3010 329617444 329617245 1.370000e-41 182.0
48 TraesCS3A01G354200 chr5D 83.636 110 16 2 2387 2495 329617979 329617871 1.100000e-17 102.0
49 TraesCS3A01G354200 chr5D 93.478 46 3 0 2445 2490 402951780 402951825 1.120000e-07 69.4
50 TraesCS3A01G354200 chr2A 78.397 287 50 12 52 331 62128755 62129036 6.390000e-40 176.0
51 TraesCS3A01G354200 chr4D 80.000 240 43 4 2841 3076 485387036 485386798 8.270000e-39 172.0
52 TraesCS3A01G354200 chr4B 78.750 240 46 4 2841 3076 618593466 618593228 8.330000e-34 156.0
53 TraesCS3A01G354200 chr5B 83.636 110 16 2 2387 2495 382777487 382777379 1.100000e-17 102.0
54 TraesCS3A01G354200 chr5B 93.478 46 3 0 2445 2490 482289133 482289178 1.120000e-07 69.4
55 TraesCS3A01G354200 chr1D 90.566 53 5 0 4322 4374 436190991 436190939 3.100000e-08 71.3
56 TraesCS3A01G354200 chr1B 90.566 53 5 0 4322 4374 591111308 591111256 3.100000e-08 71.3
57 TraesCS3A01G354200 chr1A 90.566 53 5 0 4322 4374 533449243 533449191 3.100000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G354200 chr3A 601555594 601561796 6202 True 11455.000000 11455 100.000000 1 6203 1 chr3A.!!$R1 6202
1 TraesCS3A01G354200 chr3A 697747895 697751477 3582 True 238.666667 388 82.447333 1308 5193 3 chr3A.!!$R4 3885
2 TraesCS3A01G354200 chr3B 607379503 607385314 5811 False 2894.633333 7166 94.867000 385 6203 3 chr3B.!!$F1 5818
3 TraesCS3A01G354200 chr3B 750206883 750207916 1033 True 551.000000 551 77.208000 4191 5193 1 chr3B.!!$R1 1002
4 TraesCS3A01G354200 chr3D 459462693 459468603 5910 False 2250.075000 6927 96.948250 394 6203 4 chr3D.!!$F1 5809
5 TraesCS3A01G354200 chr6D 24229733 24231207 1474 False 326.333333 673 84.891000 4793 6203 3 chr6D.!!$F1 1410
6 TraesCS3A01G354200 chr6A 22803498 22804275 777 False 271.566667 645 90.118333 5405 6203 3 chr6A.!!$F2 798
7 TraesCS3A01G354200 chr6A 22694887 22696255 1368 False 233.140000 501 86.320600 4913 6203 5 chr6A.!!$F1 1290
8 TraesCS3A01G354200 chr6B 39338911 39339688 777 False 370.000000 625 84.985000 5405 6200 2 chr6B.!!$F3 795
9 TraesCS3A01G354200 chr6B 39197644 39198868 1224 False 240.925000 481 86.193250 5064 6203 4 chr6B.!!$F2 1139
10 TraesCS3A01G354200 chr5A 465111211 465111740 529 True 556.000000 556 85.688000 5669 6203 1 chr5A.!!$R1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
372 373 0.031314 ACGCAGCTGGAGATGATACG 59.969 55.0 17.12 9.39 32.25 3.06 F
376 377 0.105453 AGCTGGAGATGATACGGGGT 60.105 55.0 0.00 0.00 0.00 4.95 F
2196 2265 0.108424 AGCGTTGGAGCTCATCAGTC 60.108 55.0 17.19 0.00 45.67 3.51 F
2198 2267 0.171231 CGTTGGAGCTCATCAGTCGA 59.829 55.0 17.19 0.00 0.00 4.20 F
2505 2577 0.530650 CGAGGTGCGGCAGTAATGAT 60.531 55.0 1.18 0.00 36.03 2.45 F
3882 4355 0.749454 GCAGGCATCCGTTCTCCATT 60.749 55.0 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1927 1994 0.389426 ATTAGTGCACCGACCGTGAC 60.389 55.000 14.63 0.00 46.20 3.67 R
2268 2337 0.543749 CCACCTCCTTGACCTCATCC 59.456 60.000 0.00 0.00 0.00 3.51 R
4056 4565 1.299541 CTTGTGCCTCGAAACACTGT 58.700 50.000 15.99 0.00 37.68 3.55 R
4057 4566 1.299541 ACTTGTGCCTCGAAACACTG 58.700 50.000 15.99 11.83 37.68 3.66 R
4323 5338 0.539438 TGAAAGGAGTGGCGCCAATT 60.539 50.000 34.66 23.34 0.00 2.32 R
5717 7151 1.065126 GGTCAGAGCAGTAAATGGCCT 60.065 52.381 3.32 0.00 34.53 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 2.838386 CGTGAGGAATCAATGGCAAG 57.162 50.000 0.00 0.00 0.00 4.01
80 81 1.402968 CGTGAGGAATCAATGGCAAGG 59.597 52.381 0.00 0.00 0.00 3.61
81 82 1.135721 GTGAGGAATCAATGGCAAGGC 59.864 52.381 0.00 0.00 0.00 4.35
82 83 1.006281 TGAGGAATCAATGGCAAGGCT 59.994 47.619 0.00 0.00 0.00 4.58
83 84 1.407979 GAGGAATCAATGGCAAGGCTG 59.592 52.381 0.00 0.00 0.00 4.85
104 105 2.361610 CCGGTCAGCCTTGCCATT 60.362 61.111 0.00 0.00 0.00 3.16
105 106 2.703798 CCGGTCAGCCTTGCCATTG 61.704 63.158 0.00 0.00 0.00 2.82
106 107 1.675310 CGGTCAGCCTTGCCATTGA 60.675 57.895 0.00 0.00 0.00 2.57
107 108 1.033746 CGGTCAGCCTTGCCATTGAT 61.034 55.000 0.00 0.00 0.00 2.57
108 109 1.188863 GGTCAGCCTTGCCATTGATT 58.811 50.000 0.00 0.00 0.00 2.57
109 110 1.135721 GGTCAGCCTTGCCATTGATTC 59.864 52.381 0.00 0.00 0.00 2.52
110 111 1.135721 GTCAGCCTTGCCATTGATTCC 59.864 52.381 0.00 0.00 0.00 3.01
111 112 0.462789 CAGCCTTGCCATTGATTCCC 59.537 55.000 0.00 0.00 0.00 3.97
112 113 0.688749 AGCCTTGCCATTGATTCCCC 60.689 55.000 0.00 0.00 0.00 4.81
113 114 2.019897 GCCTTGCCATTGATTCCCCG 62.020 60.000 0.00 0.00 0.00 5.73
114 115 0.684153 CCTTGCCATTGATTCCCCGT 60.684 55.000 0.00 0.00 0.00 5.28
115 116 1.409521 CCTTGCCATTGATTCCCCGTA 60.410 52.381 0.00 0.00 0.00 4.02
116 117 1.949525 CTTGCCATTGATTCCCCGTAG 59.050 52.381 0.00 0.00 0.00 3.51
130 131 3.509388 CGTAGGAAACCAAGACGCT 57.491 52.632 0.00 0.00 0.00 5.07
131 132 1.347320 CGTAGGAAACCAAGACGCTC 58.653 55.000 0.00 0.00 0.00 5.03
132 133 1.067776 CGTAGGAAACCAAGACGCTCT 60.068 52.381 0.00 0.00 0.00 4.09
133 134 2.338500 GTAGGAAACCAAGACGCTCTG 58.662 52.381 0.00 0.00 0.00 3.35
134 135 0.035458 AGGAAACCAAGACGCTCTGG 59.965 55.000 0.00 0.00 0.00 3.86
135 136 0.034896 GGAAACCAAGACGCTCTGGA 59.965 55.000 4.40 0.00 0.00 3.86
136 137 1.542547 GGAAACCAAGACGCTCTGGAA 60.543 52.381 4.40 0.00 0.00 3.53
137 138 2.218603 GAAACCAAGACGCTCTGGAAA 58.781 47.619 4.40 0.00 0.00 3.13
138 139 2.341846 AACCAAGACGCTCTGGAAAA 57.658 45.000 4.40 0.00 0.00 2.29
139 140 1.884235 ACCAAGACGCTCTGGAAAAG 58.116 50.000 4.40 0.00 0.00 2.27
140 141 1.416401 ACCAAGACGCTCTGGAAAAGA 59.584 47.619 4.40 0.00 0.00 2.52
141 142 1.801178 CCAAGACGCTCTGGAAAAGAC 59.199 52.381 0.00 0.00 0.00 3.01
142 143 1.457303 CAAGACGCTCTGGAAAAGACG 59.543 52.381 0.00 0.00 36.28 4.18
143 144 0.959553 AGACGCTCTGGAAAAGACGA 59.040 50.000 0.00 0.00 35.08 4.20
144 145 1.068194 AGACGCTCTGGAAAAGACGAG 60.068 52.381 0.00 0.00 35.08 4.18
145 146 0.038159 ACGCTCTGGAAAAGACGAGG 60.038 55.000 0.00 0.00 35.08 4.63
146 147 1.355066 CGCTCTGGAAAAGACGAGGC 61.355 60.000 0.00 0.00 33.78 4.70
147 148 1.355066 GCTCTGGAAAAGACGAGGCG 61.355 60.000 0.00 0.00 0.00 5.52
148 149 1.355066 CTCTGGAAAAGACGAGGCGC 61.355 60.000 0.00 0.00 0.00 6.53
149 150 2.358247 TGGAAAAGACGAGGCGCC 60.358 61.111 21.89 21.89 0.00 6.53
150 151 3.488090 GGAAAAGACGAGGCGCCG 61.488 66.667 23.20 13.22 0.00 6.46
151 152 2.737376 GAAAAGACGAGGCGCCGT 60.737 61.111 23.20 16.96 46.43 5.68
180 181 4.660938 GGCTGGCCCGTGGTTCTT 62.661 66.667 0.00 0.00 0.00 2.52
181 182 2.597510 GCTGGCCCGTGGTTCTTT 60.598 61.111 0.00 0.00 0.00 2.52
182 183 2.626780 GCTGGCCCGTGGTTCTTTC 61.627 63.158 0.00 0.00 0.00 2.62
183 184 2.281208 TGGCCCGTGGTTCTTTCG 60.281 61.111 0.00 0.00 0.00 3.46
184 185 3.733960 GGCCCGTGGTTCTTTCGC 61.734 66.667 0.00 0.00 0.00 4.70
185 186 4.084888 GCCCGTGGTTCTTTCGCG 62.085 66.667 0.00 0.00 37.80 5.87
186 187 4.084888 CCCGTGGTTCTTTCGCGC 62.085 66.667 0.00 0.00 36.88 6.86
187 188 4.084888 CCGTGGTTCTTTCGCGCC 62.085 66.667 0.00 0.00 36.88 6.53
188 189 3.342627 CGTGGTTCTTTCGCGCCA 61.343 61.111 0.00 0.00 0.00 5.69
189 190 2.677003 CGTGGTTCTTTCGCGCCAT 61.677 57.895 0.00 0.00 33.20 4.40
190 191 1.355796 CGTGGTTCTTTCGCGCCATA 61.356 55.000 0.00 0.00 33.20 2.74
191 192 0.800012 GTGGTTCTTTCGCGCCATAA 59.200 50.000 0.00 0.00 33.20 1.90
192 193 1.198178 GTGGTTCTTTCGCGCCATAAA 59.802 47.619 0.00 0.00 33.20 1.40
193 194 1.198178 TGGTTCTTTCGCGCCATAAAC 59.802 47.619 0.00 1.84 0.00 2.01
194 195 1.520368 GTTCTTTCGCGCCATAAACG 58.480 50.000 0.00 0.00 0.00 3.60
201 202 3.937062 CGCCATAAACGCTCGCCC 61.937 66.667 0.00 0.00 0.00 6.13
202 203 3.583086 GCCATAAACGCTCGCCCC 61.583 66.667 0.00 0.00 0.00 5.80
203 204 3.269347 CCATAAACGCTCGCCCCG 61.269 66.667 0.00 0.00 0.00 5.73
204 205 3.269347 CATAAACGCTCGCCCCGG 61.269 66.667 0.00 0.00 0.00 5.73
233 234 2.996734 CCCCAGCATGCCGGTTTT 60.997 61.111 18.62 0.00 31.97 2.43
234 235 1.680651 CCCCAGCATGCCGGTTTTA 60.681 57.895 18.62 0.00 31.97 1.52
235 236 1.666209 CCCCAGCATGCCGGTTTTAG 61.666 60.000 18.62 2.84 31.97 1.85
236 237 0.965363 CCCAGCATGCCGGTTTTAGT 60.965 55.000 18.62 0.00 31.97 2.24
237 238 0.887933 CCAGCATGCCGGTTTTAGTT 59.112 50.000 15.66 0.00 31.97 2.24
238 239 1.272212 CCAGCATGCCGGTTTTAGTTT 59.728 47.619 15.66 0.00 31.97 2.66
239 240 2.327568 CAGCATGCCGGTTTTAGTTTG 58.672 47.619 15.66 0.00 0.00 2.93
240 241 2.030363 CAGCATGCCGGTTTTAGTTTGA 60.030 45.455 15.66 0.00 0.00 2.69
241 242 2.228822 AGCATGCCGGTTTTAGTTTGAG 59.771 45.455 15.66 0.00 0.00 3.02
242 243 2.030274 GCATGCCGGTTTTAGTTTGAGT 60.030 45.455 6.36 0.00 0.00 3.41
243 244 3.189702 GCATGCCGGTTTTAGTTTGAGTA 59.810 43.478 6.36 0.00 0.00 2.59
244 245 4.142469 GCATGCCGGTTTTAGTTTGAGTAT 60.142 41.667 6.36 0.00 0.00 2.12
245 246 5.331902 CATGCCGGTTTTAGTTTGAGTATG 58.668 41.667 1.90 0.00 0.00 2.39
246 247 3.189702 TGCCGGTTTTAGTTTGAGTATGC 59.810 43.478 1.90 0.00 0.00 3.14
247 248 3.427098 GCCGGTTTTAGTTTGAGTATGCC 60.427 47.826 1.90 0.00 0.00 4.40
248 249 3.181514 CCGGTTTTAGTTTGAGTATGCCG 60.182 47.826 0.00 0.00 35.79 5.69
249 250 3.181514 CGGTTTTAGTTTGAGTATGCCGG 60.182 47.826 0.00 0.00 32.85 6.13
250 251 3.427098 GGTTTTAGTTTGAGTATGCCGGC 60.427 47.826 22.73 22.73 0.00 6.13
251 252 1.647346 TTAGTTTGAGTATGCCGGCG 58.353 50.000 23.90 0.00 0.00 6.46
252 253 0.533491 TAGTTTGAGTATGCCGGCGT 59.467 50.000 27.04 27.04 0.00 5.68
253 254 0.321298 AGTTTGAGTATGCCGGCGTT 60.321 50.000 29.18 17.20 0.00 4.84
254 255 1.066716 AGTTTGAGTATGCCGGCGTTA 60.067 47.619 29.18 16.01 0.00 3.18
255 256 1.733360 GTTTGAGTATGCCGGCGTTAA 59.267 47.619 29.18 14.18 0.00 2.01
256 257 2.319136 TTGAGTATGCCGGCGTTAAT 57.681 45.000 29.18 17.78 0.00 1.40
257 258 2.319136 TGAGTATGCCGGCGTTAATT 57.681 45.000 29.18 6.26 0.00 1.40
258 259 2.634600 TGAGTATGCCGGCGTTAATTT 58.365 42.857 29.18 8.12 0.00 1.82
259 260 2.610374 TGAGTATGCCGGCGTTAATTTC 59.390 45.455 29.18 16.75 0.00 2.17
260 261 1.595794 AGTATGCCGGCGTTAATTTCG 59.404 47.619 29.18 0.00 0.00 3.46
261 262 0.938713 TATGCCGGCGTTAATTTCGG 59.061 50.000 29.18 8.38 44.70 4.30
262 263 1.027792 ATGCCGGCGTTAATTTCGGT 61.028 50.000 23.90 0.00 43.87 4.69
263 264 1.235948 TGCCGGCGTTAATTTCGGTT 61.236 50.000 23.90 0.00 43.87 4.44
264 265 0.521867 GCCGGCGTTAATTTCGGTTC 60.522 55.000 12.58 0.00 43.87 3.62
265 266 0.797542 CCGGCGTTAATTTCGGTTCA 59.202 50.000 6.01 0.00 37.92 3.18
266 267 1.197264 CCGGCGTTAATTTCGGTTCAA 59.803 47.619 6.01 0.00 37.92 2.69
267 268 2.501881 CGGCGTTAATTTCGGTTCAAG 58.498 47.619 0.00 0.00 0.00 3.02
268 269 2.247637 GGCGTTAATTTCGGTTCAAGC 58.752 47.619 5.23 0.00 0.00 4.01
269 270 2.247637 GCGTTAATTTCGGTTCAAGCC 58.752 47.619 5.23 0.00 0.00 4.35
296 297 2.202703 CGGGTTCGTAAGGGCTCG 60.203 66.667 0.00 0.00 38.47 5.03
297 298 2.703798 CGGGTTCGTAAGGGCTCGA 61.704 63.158 0.00 0.00 37.50 4.04
298 299 1.153686 GGGTTCGTAAGGGCTCGAC 60.154 63.158 0.00 0.00 35.82 4.20
299 300 1.602327 GGGTTCGTAAGGGCTCGACT 61.602 60.000 0.00 0.00 35.82 4.18
300 301 0.458025 GGTTCGTAAGGGCTCGACTG 60.458 60.000 0.00 0.00 35.82 3.51
301 302 0.524862 GTTCGTAAGGGCTCGACTGA 59.475 55.000 0.00 0.00 35.82 3.41
302 303 0.809385 TTCGTAAGGGCTCGACTGAG 59.191 55.000 0.00 0.00 41.28 3.35
303 304 0.322277 TCGTAAGGGCTCGACTGAGT 60.322 55.000 0.00 0.00 40.72 3.41
304 305 0.526662 CGTAAGGGCTCGACTGAGTT 59.473 55.000 0.00 0.00 44.48 3.01
305 306 1.067776 CGTAAGGGCTCGACTGAGTTT 60.068 52.381 0.00 0.00 44.48 2.66
306 307 2.609737 CGTAAGGGCTCGACTGAGTTTT 60.610 50.000 0.00 0.00 44.48 2.43
307 308 2.640316 AAGGGCTCGACTGAGTTTTT 57.360 45.000 0.00 0.00 44.48 1.94
332 333 1.491563 CGCCGACGTGAGAAAAAGG 59.508 57.895 0.00 0.00 33.53 3.11
333 334 1.219522 CGCCGACGTGAGAAAAAGGT 61.220 55.000 0.00 0.00 33.53 3.50
334 335 0.511653 GCCGACGTGAGAAAAAGGTC 59.488 55.000 0.00 0.00 0.00 3.85
335 336 1.872653 GCCGACGTGAGAAAAAGGTCT 60.873 52.381 0.00 0.00 31.77 3.85
336 337 1.792949 CCGACGTGAGAAAAAGGTCTG 59.207 52.381 0.00 0.00 31.77 3.51
337 338 2.545113 CCGACGTGAGAAAAAGGTCTGA 60.545 50.000 0.00 0.00 31.77 3.27
338 339 3.120792 CGACGTGAGAAAAAGGTCTGAA 58.879 45.455 0.00 0.00 31.77 3.02
339 340 3.554324 CGACGTGAGAAAAAGGTCTGAAA 59.446 43.478 0.00 0.00 31.77 2.69
340 341 4.033587 CGACGTGAGAAAAAGGTCTGAAAA 59.966 41.667 0.00 0.00 31.77 2.29
341 342 5.446741 CGACGTGAGAAAAAGGTCTGAAAAA 60.447 40.000 0.00 0.00 31.77 1.94
342 343 5.880341 ACGTGAGAAAAAGGTCTGAAAAAG 58.120 37.500 0.00 0.00 0.00 2.27
343 344 5.163652 ACGTGAGAAAAAGGTCTGAAAAAGG 60.164 40.000 0.00 0.00 0.00 3.11
344 345 5.043903 GTGAGAAAAAGGTCTGAAAAAGGC 58.956 41.667 0.00 0.00 0.00 4.35
345 346 4.956075 TGAGAAAAAGGTCTGAAAAAGGCT 59.044 37.500 0.00 0.00 0.00 4.58
346 347 5.422012 TGAGAAAAAGGTCTGAAAAAGGCTT 59.578 36.000 0.00 0.00 0.00 4.35
347 348 5.664457 AGAAAAAGGTCTGAAAAAGGCTTG 58.336 37.500 0.00 0.00 0.00 4.01
348 349 5.187772 AGAAAAAGGTCTGAAAAAGGCTTGT 59.812 36.000 0.00 0.00 0.00 3.16
349 350 5.420725 AAAAGGTCTGAAAAAGGCTTGTT 57.579 34.783 1.32 1.32 0.00 2.83
350 351 6.538945 AAAAGGTCTGAAAAAGGCTTGTTA 57.461 33.333 1.83 0.00 0.00 2.41
351 352 5.774498 AAGGTCTGAAAAAGGCTTGTTAG 57.226 39.130 1.83 0.00 0.00 2.34
368 369 2.125391 GCACGCAGCTGGAGATGA 60.125 61.111 17.12 0.00 41.15 2.92
369 370 1.523258 GCACGCAGCTGGAGATGAT 60.523 57.895 17.12 0.00 41.15 2.45
370 371 0.249615 GCACGCAGCTGGAGATGATA 60.250 55.000 17.12 0.00 41.15 2.15
371 372 1.495878 CACGCAGCTGGAGATGATAC 58.504 55.000 17.12 0.00 32.25 2.24
372 373 0.031314 ACGCAGCTGGAGATGATACG 59.969 55.000 17.12 9.39 32.25 3.06
373 374 0.665670 CGCAGCTGGAGATGATACGG 60.666 60.000 17.12 0.00 32.25 4.02
374 375 0.320247 GCAGCTGGAGATGATACGGG 60.320 60.000 17.12 0.00 32.25 5.28
375 376 0.319728 CAGCTGGAGATGATACGGGG 59.680 60.000 5.57 0.00 32.25 5.73
376 377 0.105453 AGCTGGAGATGATACGGGGT 60.105 55.000 0.00 0.00 0.00 4.95
377 378 0.759346 GCTGGAGATGATACGGGGTT 59.241 55.000 0.00 0.00 0.00 4.11
378 379 1.270358 GCTGGAGATGATACGGGGTTC 60.270 57.143 0.00 0.00 0.00 3.62
379 380 1.344763 CTGGAGATGATACGGGGTTCC 59.655 57.143 0.00 0.00 0.00 3.62
380 381 0.685660 GGAGATGATACGGGGTTCCC 59.314 60.000 0.00 0.00 41.09 3.97
392 393 1.745489 GGTTCCCGTAGCCAAGCTG 60.745 63.158 0.00 0.00 40.10 4.24
488 489 4.873129 TCGAGCCGAGCGCCATTC 62.873 66.667 2.29 0.00 38.78 2.67
567 568 1.736586 GCTCATCATCCGACGACCT 59.263 57.895 0.00 0.00 0.00 3.85
572 573 0.683179 ATCATCCGACGACCTCCACA 60.683 55.000 0.00 0.00 0.00 4.17
620 622 1.256284 CGATAAGCTCTCGACGCACG 61.256 60.000 12.03 0.00 44.09 5.34
822 829 2.224548 GGCTATAACTGGGACATCCACC 60.225 54.545 0.00 0.00 41.46 4.61
997 1024 1.671379 GGGCCGGTTCTTGACTGAC 60.671 63.158 1.90 0.00 36.72 3.51
1438 1482 5.865085 TCCACTGTGTGCTACTAATCTTTT 58.135 37.500 7.08 0.00 31.34 2.27
1439 1483 5.932303 TCCACTGTGTGCTACTAATCTTTTC 59.068 40.000 7.08 0.00 31.34 2.29
1440 1484 5.934625 CCACTGTGTGCTACTAATCTTTTCT 59.065 40.000 7.08 0.00 31.34 2.52
1441 1485 6.091441 CCACTGTGTGCTACTAATCTTTTCTC 59.909 42.308 7.08 0.00 31.34 2.87
1442 1486 6.870965 CACTGTGTGCTACTAATCTTTTCTCT 59.129 38.462 0.00 0.00 0.00 3.10
1463 1508 6.584563 TCTCTTTTCTTTCAAACAAAACCGTG 59.415 34.615 0.00 0.00 0.00 4.94
1473 1518 5.049680 TCAAACAAAACCGTGAGCTAATCTC 60.050 40.000 0.00 0.00 42.23 2.75
1510 1555 5.709631 TGTGATTAAGAATGGCAGTAGCAAA 59.290 36.000 0.00 0.00 44.61 3.68
1511 1556 6.030228 GTGATTAAGAATGGCAGTAGCAAAC 58.970 40.000 0.00 0.00 44.61 2.93
1515 1560 5.473066 AAGAATGGCAGTAGCAAACAATT 57.527 34.783 0.00 0.00 44.61 2.32
1516 1561 5.473066 AGAATGGCAGTAGCAAACAATTT 57.527 34.783 0.00 0.00 44.61 1.82
1517 1562 5.857268 AGAATGGCAGTAGCAAACAATTTT 58.143 33.333 0.00 0.00 44.61 1.82
1518 1563 6.991938 AGAATGGCAGTAGCAAACAATTTTA 58.008 32.000 0.00 0.00 44.61 1.52
1519 1564 7.092716 AGAATGGCAGTAGCAAACAATTTTAG 58.907 34.615 0.00 0.00 44.61 1.85
1520 1565 6.588719 ATGGCAGTAGCAAACAATTTTAGA 57.411 33.333 0.00 0.00 44.61 2.10
1521 1566 5.768317 TGGCAGTAGCAAACAATTTTAGAC 58.232 37.500 0.00 0.00 44.61 2.59
1522 1567 5.300539 TGGCAGTAGCAAACAATTTTAGACA 59.699 36.000 0.00 0.00 44.61 3.41
1523 1568 5.629435 GGCAGTAGCAAACAATTTTAGACAC 59.371 40.000 0.00 0.00 44.61 3.67
1524 1569 6.205784 GCAGTAGCAAACAATTTTAGACACA 58.794 36.000 0.00 0.00 41.58 3.72
1594 1639 1.683011 CCACGAGCATGGGGAATCTTT 60.683 52.381 0.00 0.00 35.95 2.52
1607 1652 6.843752 TGGGGAATCTTTTGTACTTCTGTTA 58.156 36.000 0.00 0.00 0.00 2.41
1657 1702 0.391130 TATGCTTGCCCACAGTCGTC 60.391 55.000 0.00 0.00 0.00 4.20
1736 1795 2.361438 ACCGAACCGAGATCCACTATTC 59.639 50.000 0.00 0.00 0.00 1.75
1757 1816 0.897621 GCCCACAAGAATTTCCCCAG 59.102 55.000 0.00 0.00 0.00 4.45
1817 1878 6.708949 GTCAGAACCCAAAATCAAGTACAGTA 59.291 38.462 0.00 0.00 0.00 2.74
1949 2018 1.657094 CACGGTCGGTGCACTAATAAC 59.343 52.381 17.98 7.79 40.33 1.89
1977 2046 1.312815 GGGGAATGCTTCTTGATCCG 58.687 55.000 0.00 0.00 0.00 4.18
2162 2231 6.096423 TCGACATGTAAGCTATAGGTTCAGTT 59.904 38.462 19.99 9.27 37.00 3.16
2163 2232 6.199154 CGACATGTAAGCTATAGGTTCAGTTG 59.801 42.308 19.99 15.02 37.00 3.16
2164 2233 6.947464 ACATGTAAGCTATAGGTTCAGTTGT 58.053 36.000 19.99 15.56 37.00 3.32
2165 2234 7.394816 ACATGTAAGCTATAGGTTCAGTTGTT 58.605 34.615 19.99 0.00 37.00 2.83
2166 2235 7.334421 ACATGTAAGCTATAGGTTCAGTTGTTG 59.666 37.037 19.99 13.61 37.00 3.33
2175 2244 4.993905 AGGTTCAGTTGTTGTTTTAGCAC 58.006 39.130 0.00 0.00 0.00 4.40
2196 2265 0.108424 AGCGTTGGAGCTCATCAGTC 60.108 55.000 17.19 0.00 45.67 3.51
2197 2266 1.416813 GCGTTGGAGCTCATCAGTCG 61.417 60.000 17.19 13.72 0.00 4.18
2198 2267 0.171231 CGTTGGAGCTCATCAGTCGA 59.829 55.000 17.19 0.00 0.00 4.20
2199 2268 1.402852 CGTTGGAGCTCATCAGTCGAA 60.403 52.381 17.19 0.00 0.00 3.71
2207 2276 2.159421 GCTCATCAGTCGAACGAACCTA 60.159 50.000 0.00 0.00 0.00 3.08
2223 2292 5.817816 ACGAACCTACTGATGGATGAAATTC 59.182 40.000 0.00 0.00 0.00 2.17
2268 2337 1.300465 CGATGGGATGCTCACGGAG 60.300 63.158 0.00 0.00 0.00 4.63
2291 2360 0.840722 GAGGTCAAGGAGGTGGGGAA 60.841 60.000 0.00 0.00 0.00 3.97
2298 2367 3.092301 CAAGGAGGTGGGGAATTTCTTC 58.908 50.000 0.00 0.00 0.00 2.87
2361 2433 7.718272 ATGAATGATCAACCTGTTGTTTTTG 57.282 32.000 0.00 0.00 39.49 2.44
2369 2441 1.480205 CTGTTGTTTTTGCTCGCTGG 58.520 50.000 0.00 0.00 0.00 4.85
2492 2564 1.226974 CCGTGGCTACATCGAGGTG 60.227 63.158 13.92 4.17 0.00 4.00
2505 2577 0.530650 CGAGGTGCGGCAGTAATGAT 60.531 55.000 1.18 0.00 36.03 2.45
2543 2619 1.669760 TGGTCGCCATGTCGAAACC 60.670 57.895 0.00 0.00 40.43 3.27
2559 2635 3.764466 CCTCAGAGGGCGCGAGTT 61.764 66.667 12.10 0.00 0.00 3.01
2782 2888 2.125753 CTGGTGACGCTCTGGCTC 60.126 66.667 0.00 0.00 36.09 4.70
3377 3483 4.040952 CCTACTTCATATTCCTCACCAGGG 59.959 50.000 0.00 0.00 40.80 4.45
3439 3545 2.632987 TGATGATGATCAGCCACCTG 57.367 50.000 8.78 0.00 40.54 4.00
3459 3587 9.520204 CCACCTGTATAAATTCAAATGTTGATC 57.480 33.333 0.00 0.00 39.84 2.92
3473 3604 9.689976 TCAAATGTTGATCATCGTTATTTGTTT 57.310 25.926 18.29 1.78 36.18 2.83
3596 4044 3.346426 AGGCCACTGACAATTCACC 57.654 52.632 5.01 0.00 0.00 4.02
3621 4069 9.442047 CCTGATTTATTACTTCTTTCTGACTGT 57.558 33.333 0.00 0.00 0.00 3.55
3795 4243 5.126067 CCTTTCGAATGGTATCACTCCAAT 58.874 41.667 19.37 0.00 38.52 3.16
3882 4355 0.749454 GCAGGCATCCGTTCTCCATT 60.749 55.000 0.00 0.00 0.00 3.16
4064 4575 9.911788 AGAAAGATCCATATTCATACAGTGTTT 57.088 29.630 0.00 0.00 0.00 2.83
4092 4603 3.253432 CACAAGTTACTTCCAAGAAGGCC 59.747 47.826 9.05 0.00 37.29 5.19
4172 4683 5.125417 GGTGAGCTCATTTAACTATTTGGCA 59.875 40.000 21.47 0.00 0.00 4.92
4177 4688 4.407818 TCATTTAACTATTTGGCAACGCG 58.592 39.130 3.53 3.53 42.51 6.01
4208 5218 9.444600 TCAGTTAGTTTTGAGTACAGACTTTTT 57.555 29.630 0.00 0.00 35.45 1.94
4251 5266 6.212993 TCTCCTTTAGGTTTCCTAAGGTCTTC 59.787 42.308 13.77 0.00 45.40 2.87
4317 5332 3.374058 ACGACATTCTTTTGCTTATCGGG 59.626 43.478 0.00 0.00 32.78 5.14
4323 5338 2.091541 CTTTTGCTTATCGGGCTTGGA 58.908 47.619 0.00 0.00 0.00 3.53
4415 5430 9.822185 AAATTTCTTTCACTGCAAAGTATTCTT 57.178 25.926 0.00 0.00 35.25 2.52
4495 5516 1.518367 TGGAACAGGAGGTGGAAAGT 58.482 50.000 0.00 0.00 0.00 2.66
4886 5910 1.427592 GCCGAGCTCTGCATTCTCAC 61.428 60.000 23.43 0.00 0.00 3.51
4903 5931 4.155709 TCTCACCTGATCCCATATGTCTC 58.844 47.826 1.24 0.00 0.00 3.36
5078 6328 4.827692 AGACCGTGCAATAGTTAACATGA 58.172 39.130 8.61 0.00 0.00 3.07
5178 6432 3.551846 CCAGACAACCACAACTAGGTTT 58.448 45.455 0.00 0.00 46.85 3.27
5231 6586 4.932146 ACCCGAAGAATTTCAAACAGTTG 58.068 39.130 0.00 0.00 35.95 3.16
5233 6588 4.037446 CCCGAAGAATTTCAAACAGTTGGA 59.963 41.667 0.00 0.00 35.29 3.53
5717 7151 2.092646 AGTGGCAGGTTGTTTGACTGTA 60.093 45.455 0.00 0.00 34.79 2.74
5795 7274 2.176247 TCTAGCCCCCTTAAGTCTGG 57.824 55.000 0.97 0.00 0.00 3.86
5989 7468 4.280929 ACTTTCCCTGCAAAATACTTGTCC 59.719 41.667 0.00 0.00 0.00 4.02
6056 7535 3.551863 GCGATGATCAACTCGAGATCCTT 60.552 47.826 21.68 0.00 40.87 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.814294 ATTCCTCACGGACGGCGC 62.814 66.667 6.90 0.00 39.60 6.53
53 54 2.582498 GATTCCTCACGGACGGCG 60.582 66.667 4.80 4.80 39.60 6.46
54 55 0.462047 ATTGATTCCTCACGGACGGC 60.462 55.000 0.00 0.00 39.60 5.68
55 56 1.290203 CATTGATTCCTCACGGACGG 58.710 55.000 0.00 0.00 39.60 4.79
56 57 1.290203 CCATTGATTCCTCACGGACG 58.710 55.000 0.00 0.00 39.60 4.79
57 58 1.017387 GCCATTGATTCCTCACGGAC 58.983 55.000 0.00 0.00 39.60 4.79
58 59 0.617935 TGCCATTGATTCCTCACGGA 59.382 50.000 0.00 0.00 37.60 4.69
59 60 1.402968 CTTGCCATTGATTCCTCACGG 59.597 52.381 0.00 0.00 0.00 4.94
60 61 1.402968 CCTTGCCATTGATTCCTCACG 59.597 52.381 0.00 0.00 0.00 4.35
61 62 1.135721 GCCTTGCCATTGATTCCTCAC 59.864 52.381 0.00 0.00 0.00 3.51
62 63 1.006281 AGCCTTGCCATTGATTCCTCA 59.994 47.619 0.00 0.00 0.00 3.86
63 64 1.407979 CAGCCTTGCCATTGATTCCTC 59.592 52.381 0.00 0.00 0.00 3.71
64 65 1.481871 CAGCCTTGCCATTGATTCCT 58.518 50.000 0.00 0.00 0.00 3.36
65 66 0.179092 GCAGCCTTGCCATTGATTCC 60.179 55.000 0.00 0.00 44.74 3.01
66 67 3.357504 GCAGCCTTGCCATTGATTC 57.642 52.632 0.00 0.00 44.74 2.52
87 88 2.361610 AATGGCAAGGCTGACCGG 60.362 61.111 0.00 0.00 42.76 5.28
88 89 1.033746 ATCAATGGCAAGGCTGACCG 61.034 55.000 0.00 0.00 42.76 4.79
89 90 1.135721 GAATCAATGGCAAGGCTGACC 59.864 52.381 0.00 0.00 0.00 4.02
90 91 1.135721 GGAATCAATGGCAAGGCTGAC 59.864 52.381 0.00 0.00 0.00 3.51
91 92 1.477553 GGAATCAATGGCAAGGCTGA 58.522 50.000 0.00 0.00 0.00 4.26
92 93 0.462789 GGGAATCAATGGCAAGGCTG 59.537 55.000 0.00 0.00 0.00 4.85
93 94 0.688749 GGGGAATCAATGGCAAGGCT 60.689 55.000 0.00 0.00 0.00 4.58
94 95 1.825341 GGGGAATCAATGGCAAGGC 59.175 57.895 0.00 0.00 0.00 4.35
95 96 0.684153 ACGGGGAATCAATGGCAAGG 60.684 55.000 0.00 0.00 0.00 3.61
96 97 1.949525 CTACGGGGAATCAATGGCAAG 59.050 52.381 0.00 0.00 0.00 4.01
97 98 1.409521 CCTACGGGGAATCAATGGCAA 60.410 52.381 0.00 0.00 37.23 4.52
98 99 0.182537 CCTACGGGGAATCAATGGCA 59.817 55.000 0.00 0.00 37.23 4.92
99 100 0.472471 TCCTACGGGGAATCAATGGC 59.528 55.000 0.00 0.00 41.91 4.40
108 109 0.978907 GTCTTGGTTTCCTACGGGGA 59.021 55.000 0.00 0.00 43.41 4.81
109 110 0.390735 CGTCTTGGTTTCCTACGGGG 60.391 60.000 0.00 0.00 0.00 5.73
110 111 1.017701 GCGTCTTGGTTTCCTACGGG 61.018 60.000 0.00 0.00 34.29 5.28
111 112 0.037605 AGCGTCTTGGTTTCCTACGG 60.038 55.000 0.00 0.00 34.29 4.02
112 113 1.067776 AGAGCGTCTTGGTTTCCTACG 60.068 52.381 0.00 0.00 36.67 3.51
113 114 2.338500 CAGAGCGTCTTGGTTTCCTAC 58.662 52.381 0.00 0.00 0.00 3.18
114 115 1.275291 CCAGAGCGTCTTGGTTTCCTA 59.725 52.381 0.00 0.00 0.00 2.94
115 116 0.035458 CCAGAGCGTCTTGGTTTCCT 59.965 55.000 0.00 0.00 0.00 3.36
116 117 0.034896 TCCAGAGCGTCTTGGTTTCC 59.965 55.000 2.05 0.00 0.00 3.13
117 118 1.878953 TTCCAGAGCGTCTTGGTTTC 58.121 50.000 2.05 0.00 0.00 2.78
118 119 2.341846 TTTCCAGAGCGTCTTGGTTT 57.658 45.000 2.05 0.00 0.00 3.27
119 120 2.158813 TCTTTTCCAGAGCGTCTTGGTT 60.159 45.455 2.05 0.00 0.00 3.67
120 121 1.416401 TCTTTTCCAGAGCGTCTTGGT 59.584 47.619 2.05 0.00 0.00 3.67
121 122 1.801178 GTCTTTTCCAGAGCGTCTTGG 59.199 52.381 0.00 0.00 29.34 3.61
122 123 1.457303 CGTCTTTTCCAGAGCGTCTTG 59.543 52.381 0.00 0.00 29.34 3.02
123 124 1.340248 TCGTCTTTTCCAGAGCGTCTT 59.660 47.619 0.00 0.00 31.67 3.01
124 125 0.959553 TCGTCTTTTCCAGAGCGTCT 59.040 50.000 0.00 0.00 31.67 4.18
125 126 1.341606 CTCGTCTTTTCCAGAGCGTC 58.658 55.000 0.00 0.00 31.67 5.19
126 127 0.038159 CCTCGTCTTTTCCAGAGCGT 60.038 55.000 0.00 0.00 31.67 5.07
127 128 1.355066 GCCTCGTCTTTTCCAGAGCG 61.355 60.000 0.00 0.00 29.34 5.03
128 129 1.355066 CGCCTCGTCTTTTCCAGAGC 61.355 60.000 0.00 0.00 29.34 4.09
129 130 1.355066 GCGCCTCGTCTTTTCCAGAG 61.355 60.000 0.00 0.00 29.34 3.35
130 131 1.374252 GCGCCTCGTCTTTTCCAGA 60.374 57.895 0.00 0.00 0.00 3.86
131 132 2.391389 GGCGCCTCGTCTTTTCCAG 61.391 63.158 22.15 0.00 0.00 3.86
132 133 2.358247 GGCGCCTCGTCTTTTCCA 60.358 61.111 22.15 0.00 0.00 3.53
133 134 3.488090 CGGCGCCTCGTCTTTTCC 61.488 66.667 26.68 0.00 0.00 3.13
134 135 2.737376 ACGGCGCCTCGTCTTTTC 60.737 61.111 26.68 0.00 39.34 2.29
163 164 4.660938 AAGAACCACGGGCCAGCC 62.661 66.667 4.39 0.00 0.00 4.85
164 165 2.597510 AAAGAACCACGGGCCAGC 60.598 61.111 4.39 0.00 0.00 4.85
165 166 2.325082 CGAAAGAACCACGGGCCAG 61.325 63.158 4.39 1.85 0.00 4.85
166 167 2.281208 CGAAAGAACCACGGGCCA 60.281 61.111 4.39 0.00 0.00 5.36
167 168 3.733960 GCGAAAGAACCACGGGCC 61.734 66.667 0.00 0.00 0.00 5.80
168 169 4.084888 CGCGAAAGAACCACGGGC 62.085 66.667 0.00 0.00 33.89 6.13
169 170 4.084888 GCGCGAAAGAACCACGGG 62.085 66.667 12.10 0.00 41.49 5.28
170 171 4.084888 GGCGCGAAAGAACCACGG 62.085 66.667 12.10 0.00 0.00 4.94
171 172 1.355796 TATGGCGCGAAAGAACCACG 61.356 55.000 12.10 0.00 39.87 4.94
172 173 0.800012 TTATGGCGCGAAAGAACCAC 59.200 50.000 12.10 0.00 39.87 4.16
173 174 1.198178 GTTTATGGCGCGAAAGAACCA 59.802 47.619 12.10 6.86 41.04 3.67
174 175 1.789054 CGTTTATGGCGCGAAAGAACC 60.789 52.381 12.10 0.00 0.00 3.62
175 176 1.520368 CGTTTATGGCGCGAAAGAAC 58.480 50.000 12.10 6.51 0.00 3.01
176 177 0.179210 GCGTTTATGGCGCGAAAGAA 60.179 50.000 12.10 0.00 45.36 2.52
177 178 1.422269 GCGTTTATGGCGCGAAAGA 59.578 52.632 12.10 0.00 45.36 2.52
178 179 3.962399 GCGTTTATGGCGCGAAAG 58.038 55.556 12.10 0.00 45.36 2.62
184 185 3.937062 GGGCGAGCGTTTATGGCG 61.937 66.667 0.00 0.00 35.00 5.69
185 186 3.583086 GGGGCGAGCGTTTATGGC 61.583 66.667 0.00 0.00 0.00 4.40
186 187 3.269347 CGGGGCGAGCGTTTATGG 61.269 66.667 0.00 0.00 0.00 2.74
187 188 3.269347 CCGGGGCGAGCGTTTATG 61.269 66.667 0.00 0.00 0.00 1.90
216 217 1.666209 CTAAAACCGGCATGCTGGGG 61.666 60.000 41.35 29.03 46.47 4.96
217 218 0.965363 ACTAAAACCGGCATGCTGGG 60.965 55.000 41.35 31.25 46.47 4.45
219 220 2.030363 TCAAACTAAAACCGGCATGCTG 60.030 45.455 20.13 20.13 0.00 4.41
220 221 2.228822 CTCAAACTAAAACCGGCATGCT 59.771 45.455 18.92 0.00 0.00 3.79
221 222 2.030274 ACTCAAACTAAAACCGGCATGC 60.030 45.455 9.90 9.90 0.00 4.06
222 223 3.915437 ACTCAAACTAAAACCGGCATG 57.085 42.857 0.00 0.00 0.00 4.06
223 224 4.142469 GCATACTCAAACTAAAACCGGCAT 60.142 41.667 0.00 0.00 0.00 4.40
224 225 3.189702 GCATACTCAAACTAAAACCGGCA 59.810 43.478 0.00 0.00 0.00 5.69
225 226 3.427098 GGCATACTCAAACTAAAACCGGC 60.427 47.826 0.00 0.00 0.00 6.13
226 227 3.181514 CGGCATACTCAAACTAAAACCGG 60.182 47.826 0.00 0.00 33.49 5.28
227 228 3.181514 CCGGCATACTCAAACTAAAACCG 60.182 47.826 0.00 0.00 36.74 4.44
228 229 3.427098 GCCGGCATACTCAAACTAAAACC 60.427 47.826 24.80 0.00 0.00 3.27
229 230 3.726782 CGCCGGCATACTCAAACTAAAAC 60.727 47.826 28.98 0.00 0.00 2.43
230 231 2.417239 CGCCGGCATACTCAAACTAAAA 59.583 45.455 28.98 0.00 0.00 1.52
231 232 2.004017 CGCCGGCATACTCAAACTAAA 58.996 47.619 28.98 0.00 0.00 1.85
232 233 1.066716 ACGCCGGCATACTCAAACTAA 60.067 47.619 28.98 0.00 0.00 2.24
233 234 0.533491 ACGCCGGCATACTCAAACTA 59.467 50.000 28.98 0.00 0.00 2.24
234 235 0.321298 AACGCCGGCATACTCAAACT 60.321 50.000 28.98 0.00 0.00 2.66
235 236 1.361793 TAACGCCGGCATACTCAAAC 58.638 50.000 28.98 0.00 0.00 2.93
236 237 2.096220 TTAACGCCGGCATACTCAAA 57.904 45.000 28.98 7.24 0.00 2.69
237 238 2.319136 ATTAACGCCGGCATACTCAA 57.681 45.000 28.98 11.14 0.00 3.02
238 239 2.319136 AATTAACGCCGGCATACTCA 57.681 45.000 28.98 4.70 0.00 3.41
239 240 2.348218 CGAAATTAACGCCGGCATACTC 60.348 50.000 28.98 11.63 0.00 2.59
240 241 1.595794 CGAAATTAACGCCGGCATACT 59.404 47.619 28.98 10.25 0.00 2.12
241 242 1.333435 CCGAAATTAACGCCGGCATAC 60.333 52.381 28.98 9.06 35.29 2.39
242 243 0.938713 CCGAAATTAACGCCGGCATA 59.061 50.000 28.98 16.29 35.29 3.14
243 244 1.027792 ACCGAAATTAACGCCGGCAT 61.028 50.000 28.98 17.47 45.29 4.40
244 245 1.235948 AACCGAAATTAACGCCGGCA 61.236 50.000 28.98 7.02 45.29 5.69
245 246 0.521867 GAACCGAAATTAACGCCGGC 60.522 55.000 19.07 19.07 45.29 6.13
246 247 0.797542 TGAACCGAAATTAACGCCGG 59.202 50.000 0.00 0.00 46.65 6.13
247 248 2.501881 CTTGAACCGAAATTAACGCCG 58.498 47.619 0.00 0.00 0.00 6.46
248 249 2.247637 GCTTGAACCGAAATTAACGCC 58.752 47.619 0.00 0.00 0.00 5.68
249 250 2.247637 GGCTTGAACCGAAATTAACGC 58.752 47.619 0.00 0.00 0.00 4.84
279 280 2.202703 CGAGCCCTTACGAACCCG 60.203 66.667 0.00 0.00 42.50 5.28
280 281 1.153686 GTCGAGCCCTTACGAACCC 60.154 63.158 0.00 0.00 40.12 4.11
281 282 0.458025 CAGTCGAGCCCTTACGAACC 60.458 60.000 0.00 0.00 40.12 3.62
282 283 0.524862 TCAGTCGAGCCCTTACGAAC 59.475 55.000 0.00 0.00 40.12 3.95
283 284 0.809385 CTCAGTCGAGCCCTTACGAA 59.191 55.000 0.00 0.00 40.12 3.85
284 285 0.322277 ACTCAGTCGAGCCCTTACGA 60.322 55.000 0.00 0.00 43.66 3.43
285 286 0.526662 AACTCAGTCGAGCCCTTACG 59.473 55.000 0.00 0.00 43.66 3.18
286 287 2.745515 AAACTCAGTCGAGCCCTTAC 57.254 50.000 0.00 0.00 43.66 2.34
287 288 3.764237 AAAAACTCAGTCGAGCCCTTA 57.236 42.857 0.00 0.00 43.66 2.69
288 289 2.640316 AAAAACTCAGTCGAGCCCTT 57.360 45.000 0.00 0.00 43.66 3.95
314 315 1.219522 ACCTTTTTCTCACGTCGGCG 61.220 55.000 8.42 8.42 44.93 6.46
315 316 0.511653 GACCTTTTTCTCACGTCGGC 59.488 55.000 0.00 0.00 0.00 5.54
316 317 1.792949 CAGACCTTTTTCTCACGTCGG 59.207 52.381 0.00 0.00 0.00 4.79
317 318 2.739292 TCAGACCTTTTTCTCACGTCG 58.261 47.619 0.00 0.00 0.00 5.12
318 319 5.479716 TTTTCAGACCTTTTTCTCACGTC 57.520 39.130 0.00 0.00 0.00 4.34
319 320 5.163652 CCTTTTTCAGACCTTTTTCTCACGT 60.164 40.000 0.00 0.00 0.00 4.49
320 321 5.273944 CCTTTTTCAGACCTTTTTCTCACG 58.726 41.667 0.00 0.00 0.00 4.35
321 322 5.043903 GCCTTTTTCAGACCTTTTTCTCAC 58.956 41.667 0.00 0.00 0.00 3.51
322 323 4.956075 AGCCTTTTTCAGACCTTTTTCTCA 59.044 37.500 0.00 0.00 0.00 3.27
323 324 5.521906 AGCCTTTTTCAGACCTTTTTCTC 57.478 39.130 0.00 0.00 0.00 2.87
324 325 5.187772 ACAAGCCTTTTTCAGACCTTTTTCT 59.812 36.000 0.00 0.00 0.00 2.52
325 326 5.419542 ACAAGCCTTTTTCAGACCTTTTTC 58.580 37.500 0.00 0.00 0.00 2.29
326 327 5.420725 ACAAGCCTTTTTCAGACCTTTTT 57.579 34.783 0.00 0.00 0.00 1.94
327 328 5.420725 AACAAGCCTTTTTCAGACCTTTT 57.579 34.783 0.00 0.00 0.00 2.27
328 329 5.451937 GCTAACAAGCCTTTTTCAGACCTTT 60.452 40.000 0.00 0.00 0.00 3.11
329 330 4.038042 GCTAACAAGCCTTTTTCAGACCTT 59.962 41.667 0.00 0.00 0.00 3.50
330 331 3.570125 GCTAACAAGCCTTTTTCAGACCT 59.430 43.478 0.00 0.00 0.00 3.85
331 332 3.317993 TGCTAACAAGCCTTTTTCAGACC 59.682 43.478 0.00 0.00 0.00 3.85
332 333 4.290969 GTGCTAACAAGCCTTTTTCAGAC 58.709 43.478 0.00 0.00 0.00 3.51
333 334 3.003275 CGTGCTAACAAGCCTTTTTCAGA 59.997 43.478 0.00 0.00 0.00 3.27
334 335 3.300009 CGTGCTAACAAGCCTTTTTCAG 58.700 45.455 0.00 0.00 0.00 3.02
335 336 2.542824 GCGTGCTAACAAGCCTTTTTCA 60.543 45.455 0.00 0.00 44.41 2.69
336 337 2.051423 GCGTGCTAACAAGCCTTTTTC 58.949 47.619 0.00 0.00 44.41 2.29
337 338 2.134201 GCGTGCTAACAAGCCTTTTT 57.866 45.000 0.00 0.00 44.41 1.94
338 339 3.865700 GCGTGCTAACAAGCCTTTT 57.134 47.368 0.00 0.00 44.41 2.27
351 352 0.249615 TATCATCTCCAGCTGCGTGC 60.250 55.000 8.66 0.00 43.29 5.34
352 353 1.495878 GTATCATCTCCAGCTGCGTG 58.504 55.000 8.66 3.92 0.00 5.34
353 354 0.031314 CGTATCATCTCCAGCTGCGT 59.969 55.000 8.66 0.00 0.00 5.24
354 355 0.665670 CCGTATCATCTCCAGCTGCG 60.666 60.000 8.66 2.70 0.00 5.18
355 356 0.320247 CCCGTATCATCTCCAGCTGC 60.320 60.000 8.66 0.00 0.00 5.25
356 357 0.319728 CCCCGTATCATCTCCAGCTG 59.680 60.000 6.78 6.78 0.00 4.24
357 358 0.105453 ACCCCGTATCATCTCCAGCT 60.105 55.000 0.00 0.00 0.00 4.24
358 359 0.759346 AACCCCGTATCATCTCCAGC 59.241 55.000 0.00 0.00 0.00 4.85
359 360 1.344763 GGAACCCCGTATCATCTCCAG 59.655 57.143 0.00 0.00 0.00 3.86
360 361 1.420430 GGAACCCCGTATCATCTCCA 58.580 55.000 0.00 0.00 0.00 3.86
373 374 2.967946 AGCTTGGCTACGGGAACCC 61.968 63.158 0.00 0.00 41.85 4.11
374 375 1.745489 CAGCTTGGCTACGGGAACC 60.745 63.158 0.00 0.00 41.41 3.62
375 376 2.399356 GCAGCTTGGCTACGGGAAC 61.399 63.158 0.00 0.00 36.40 3.62
376 377 2.046314 GCAGCTTGGCTACGGGAA 60.046 61.111 0.00 0.00 36.40 3.97
377 378 4.096003 GGCAGCTTGGCTACGGGA 62.096 66.667 0.00 0.00 40.14 5.14
378 379 4.408821 TGGCAGCTTGGCTACGGG 62.409 66.667 10.22 0.00 44.10 5.28
379 380 3.127533 GTGGCAGCTTGGCTACGG 61.128 66.667 10.22 0.00 44.10 4.02
380 381 3.127533 GGTGGCAGCTTGGCTACG 61.128 66.667 9.90 0.00 45.13 3.51
381 382 3.127533 CGGTGGCAGCTTGGCTAC 61.128 66.667 15.48 4.19 44.10 3.58
382 383 4.408821 CCGGTGGCAGCTTGGCTA 62.409 66.667 15.48 0.00 44.10 3.93
529 530 1.280982 CGACGGTTGATGATGGTGAG 58.719 55.000 0.00 0.00 0.00 3.51
530 531 0.108377 CCGACGGTTGATGATGGTGA 60.108 55.000 5.48 0.00 0.00 4.02
564 565 2.116125 GCAAAGGCCTGTGGAGGT 59.884 61.111 24.78 0.00 42.15 3.85
647 649 3.518068 GGCGAGATTTTGGGCCGG 61.518 66.667 0.00 0.00 35.59 6.13
649 651 2.418083 CCTGGCGAGATTTTGGGCC 61.418 63.158 0.00 0.00 45.76 5.80
650 652 2.418083 CCCTGGCGAGATTTTGGGC 61.418 63.158 0.00 0.00 0.00 5.36
822 829 1.351017 AGGATATGGCGGGTAACATGG 59.649 52.381 0.00 0.00 39.74 3.66
988 1006 3.786101 CGCCATCCGTCAGTCAAG 58.214 61.111 0.00 0.00 0.00 3.02
1056 1083 4.157120 CCCCCGTCCACCGTGATC 62.157 72.222 0.00 0.00 33.66 2.92
1116 1143 4.760220 ATCAGCCCCCGGAACCCT 62.760 66.667 0.73 0.00 0.00 4.34
1417 1461 6.870965 AGAGAAAAGATTAGTAGCACACAGTG 59.129 38.462 0.00 0.00 36.51 3.66
1438 1482 6.584563 CACGGTTTTGTTTGAAAGAAAAGAGA 59.415 34.615 12.44 0.00 34.78 3.10
1439 1483 6.584563 TCACGGTTTTGTTTGAAAGAAAAGAG 59.415 34.615 12.44 11.55 34.78 2.85
1440 1484 6.448006 TCACGGTTTTGTTTGAAAGAAAAGA 58.552 32.000 12.44 4.93 34.78 2.52
1441 1485 6.669741 GCTCACGGTTTTGTTTGAAAGAAAAG 60.670 38.462 12.44 5.79 34.78 2.27
1442 1486 5.119434 GCTCACGGTTTTGTTTGAAAGAAAA 59.881 36.000 8.64 8.64 32.07 2.29
1463 1508 3.907194 CCGTAATCGAACGAGATTAGCTC 59.093 47.826 11.09 0.00 45.68 4.09
1473 1518 4.794762 TCTTAATCACACCGTAATCGAACG 59.205 41.667 2.65 2.65 42.49 3.95
1510 1555 9.651913 AATCAACTGTTTTGTGTCTAAAATTGT 57.348 25.926 0.00 0.00 32.71 2.71
1594 1639 3.844211 AGATGCCCCTAACAGAAGTACAA 59.156 43.478 0.00 0.00 0.00 2.41
1607 1652 0.469705 TGCAACAACAAGATGCCCCT 60.470 50.000 0.00 0.00 44.63 4.79
1657 1702 3.493503 GGAACAGTTCGTGGTAACTTCAG 59.506 47.826 7.22 0.00 37.61 3.02
1736 1795 1.604147 GGGGAAATTCTTGTGGGCCG 61.604 60.000 0.00 0.00 0.00 6.13
1771 1830 0.698238 AGGCACTATTTGGGACAGCA 59.302 50.000 0.00 0.00 36.43 4.41
1772 1831 1.098050 CAGGCACTATTTGGGACAGC 58.902 55.000 0.00 0.00 36.43 4.40
1773 1832 1.004745 ACCAGGCACTATTTGGGACAG 59.995 52.381 0.00 0.00 36.43 3.51
1774 1833 1.004277 GACCAGGCACTATTTGGGACA 59.996 52.381 0.00 0.00 36.02 4.02
1817 1878 0.692419 CTAGGAGTGGGGGTGCTGAT 60.692 60.000 0.00 0.00 0.00 2.90
1927 1994 0.389426 ATTAGTGCACCGACCGTGAC 60.389 55.000 14.63 0.00 46.20 3.67
1940 2009 5.640158 TCCCCCATTAGTGGTTATTAGTG 57.360 43.478 3.28 0.00 44.48 2.74
1949 2018 2.310538 GAAGCATTCCCCCATTAGTGG 58.689 52.381 0.00 0.00 41.57 4.00
1977 2046 1.863155 TTGGAGTCCCCCATGCCTTC 61.863 60.000 6.74 0.00 35.87 3.46
2162 2231 1.384525 ACGCTGGTGCTAAAACAACA 58.615 45.000 0.00 0.00 35.52 3.33
2163 2232 2.116366 CAACGCTGGTGCTAAAACAAC 58.884 47.619 0.00 0.00 36.97 3.32
2164 2233 1.066303 CCAACGCTGGTGCTAAAACAA 59.934 47.619 0.00 0.00 38.00 2.83
2165 2234 0.665835 CCAACGCTGGTGCTAAAACA 59.334 50.000 0.00 0.00 38.00 2.83
2166 2235 0.948678 TCCAACGCTGGTGCTAAAAC 59.051 50.000 4.46 0.00 43.97 2.43
2175 2244 1.078918 TGATGAGCTCCAACGCTGG 60.079 57.895 12.15 0.00 45.08 4.85
2196 2265 2.933495 TCCATCAGTAGGTTCGTTCG 57.067 50.000 0.00 0.00 0.00 3.95
2197 2266 4.386867 TCATCCATCAGTAGGTTCGTTC 57.613 45.455 0.00 0.00 0.00 3.95
2198 2267 4.819105 TTCATCCATCAGTAGGTTCGTT 57.181 40.909 0.00 0.00 0.00 3.85
2199 2268 4.819105 TTTCATCCATCAGTAGGTTCGT 57.181 40.909 0.00 0.00 0.00 3.85
2207 2276 2.684881 GTGCCGAATTTCATCCATCAGT 59.315 45.455 0.00 0.00 0.00 3.41
2268 2337 0.543749 CCACCTCCTTGACCTCATCC 59.456 60.000 0.00 0.00 0.00 3.51
2291 2360 3.390639 AGATCCCATCGAGCAGAAGAAAT 59.609 43.478 0.00 0.00 0.00 2.17
2298 2367 0.600518 CAGCAGATCCCATCGAGCAG 60.601 60.000 0.00 0.00 37.56 4.24
2343 2412 3.730715 CGAGCAAAAACAACAGGTTGATC 59.269 43.478 18.28 0.00 42.93 2.92
2361 2433 2.821991 ATAACCTATCACCAGCGAGC 57.178 50.000 0.00 0.00 0.00 5.03
2369 2441 6.530534 ACGCGCTCAATATAATAACCTATCAC 59.469 38.462 5.73 0.00 0.00 3.06
2492 2564 6.197364 ACTAGTCTATATCATTACTGCCGC 57.803 41.667 0.00 0.00 0.00 6.53
2505 2577 8.085296 GCGACCACTAACTACTACTAGTCTATA 58.915 40.741 0.00 0.00 31.42 1.31
2520 2592 0.108992 TCGACATGGCGACCACTAAC 60.109 55.000 22.34 0.00 35.80 2.34
2521 2593 0.604073 TTCGACATGGCGACCACTAA 59.396 50.000 26.36 4.54 40.42 2.24
2543 2619 2.507992 CAACTCGCGCCCTCTGAG 60.508 66.667 0.00 4.55 35.85 3.35
2559 2635 1.761174 GGAGGTTTGGAGGTCAGCA 59.239 57.895 0.00 0.00 0.00 4.41
3377 3483 4.510038 TTACCGTCTTCTTGTACCAGAC 57.490 45.455 0.00 0.00 34.68 3.51
3459 3587 5.688823 TGTCTGAGCAAACAAATAACGATG 58.311 37.500 0.00 0.00 0.00 3.84
3473 3604 1.911357 AGGAACATCCATGTCTGAGCA 59.089 47.619 0.00 0.00 40.80 4.26
3795 4243 6.121590 TCTTTGTTCATATATGCAGCAAGGA 58.878 36.000 7.92 13.57 0.00 3.36
3882 4355 2.820178 TCATCTCCAGGTGCAGAAGTA 58.180 47.619 0.00 0.00 0.00 2.24
4056 4565 1.299541 CTTGTGCCTCGAAACACTGT 58.700 50.000 15.99 0.00 37.68 3.55
4057 4566 1.299541 ACTTGTGCCTCGAAACACTG 58.700 50.000 15.99 11.83 37.68 3.66
4064 4575 1.689813 TGGAAGTAACTTGTGCCTCGA 59.310 47.619 0.00 0.00 0.00 4.04
4092 4603 3.467803 AGTTTCAAGTCTCGAAAGGGTG 58.532 45.455 0.00 0.00 33.20 4.61
4172 4683 5.812652 TCAAAACTAACTGAATTTCGCGTT 58.187 33.333 5.77 0.00 0.00 4.84
4177 4688 9.865484 GTCTGTACTCAAAACTAACTGAATTTC 57.135 33.333 0.00 0.00 0.00 2.17
4208 5218 6.676990 AGGAGACACAGCAATGATGATATA 57.323 37.500 5.17 0.00 0.00 0.86
4251 5266 1.527034 CACCATAAGGGCCATCGATG 58.473 55.000 18.76 18.76 42.05 3.84
4317 5332 2.125952 GTGGCGCCAATTCCAAGC 60.126 61.111 34.66 12.82 33.57 4.01
4323 5338 0.539438 TGAAAGGAGTGGCGCCAATT 60.539 50.000 34.66 23.34 0.00 2.32
4453 5471 6.971184 CCATCAACTCATTTTCTCAGTTATGC 59.029 38.462 0.00 0.00 0.00 3.14
4495 5516 4.466827 TGCCTATCTCAGAACCGTGTATA 58.533 43.478 0.00 0.00 0.00 1.47
4681 5702 7.653713 CCAGTTTTATAGATGCGACTAGACATT 59.346 37.037 0.00 0.00 0.00 2.71
4870 5894 1.206610 TCAGGTGAGAATGCAGAGCTC 59.793 52.381 5.27 5.27 0.00 4.09
4886 5910 2.905085 AGCAGAGACATATGGGATCAGG 59.095 50.000 7.80 0.68 0.00 3.86
4903 5931 2.213499 ACGTGTCAGAAAAGGAAGCAG 58.787 47.619 0.00 0.00 0.00 4.24
5078 6328 9.520515 AATAGAAAACACCTGTAGATTCATGTT 57.479 29.630 0.00 0.00 31.82 2.71
5196 6450 3.109151 TCTTCGGGTATGGCCTTAGAAA 58.891 45.455 3.32 0.00 37.43 2.52
5295 6657 2.691011 ACAACCCAGCGTACAACAAAAT 59.309 40.909 0.00 0.00 0.00 1.82
5608 7039 5.734503 GCAGACCTCCAAAAGAAAAACTGAG 60.735 44.000 0.00 0.00 0.00 3.35
5717 7151 1.065126 GGTCAGAGCAGTAAATGGCCT 60.065 52.381 3.32 0.00 34.53 5.19
5751 7185 1.398390 CGCAAGGAACTAATGGTGCTC 59.602 52.381 0.00 0.00 38.49 4.26
5795 7274 3.325293 TCAGAATGCTGTTCCTGACTC 57.675 47.619 0.00 0.00 42.84 3.36
5989 7468 3.243535 GGAAAGTGAGAAAGCAGTTTGGG 60.244 47.826 0.00 0.00 40.48 4.12
6056 7535 0.528017 CCTGCAGTAAGAGACGCTCA 59.472 55.000 13.81 0.00 32.06 4.26
6144 7623 5.065914 ACACTGCATCTGTTGTCAAAGTAT 58.934 37.500 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.