Multiple sequence alignment - TraesCS3A01G353900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G353900 chr3A 100.000 2579 0 0 1 2579 601538506 601535928 0.000000e+00 4763.0
1 TraesCS3A01G353900 chr3D 87.863 791 56 13 972 1747 459499102 459499867 0.000000e+00 893.0
2 TraesCS3A01G353900 chr3D 92.571 350 19 3 154 496 459485851 459486200 1.780000e-136 496.0
3 TraesCS3A01G353900 chr3D 87.417 453 20 11 2142 2579 459500483 459500913 1.070000e-133 486.0
4 TraesCS3A01G353900 chr3D 91.089 202 14 1 771 972 459486770 459486967 1.180000e-68 270.0
5 TraesCS3A01G353900 chr3D 92.157 153 5 5 1 153 459485619 459485764 2.600000e-50 209.0
6 TraesCS3A01G353900 chr3D 93.269 104 4 3 544 647 459486645 459486745 1.600000e-32 150.0
7 TraesCS3A01G353900 chr3D 76.753 271 51 8 1824 2083 459500124 459500393 9.620000e-30 141.0
8 TraesCS3A01G353900 chr3D 97.500 40 1 0 510 549 459486596 459486635 4.600000e-08 69.4
9 TraesCS3A01G353900 chr3B 89.333 525 25 14 1 509 607412911 607413420 4.680000e-177 630.0
10 TraesCS3A01G353900 chr3B 87.664 381 43 2 1231 1611 607416021 607416397 8.470000e-120 440.0
11 TraesCS3A01G353900 chr3B 89.112 349 31 5 835 1180 607415661 607416005 6.590000e-116 427.0
12 TraesCS3A01G353900 chr3B 88.372 129 6 6 639 766 607413481 607413601 2.070000e-31 147.0
13 TraesCS3A01G353900 chr3B 90.541 74 4 2 540 613 607413415 607413485 7.600000e-16 95.3
14 TraesCS3A01G353900 chr1A 79.659 703 103 26 937 1636 110160447 110159782 1.080000e-128 470.0
15 TraesCS3A01G353900 chr5B 80.428 654 94 24 938 1584 377207580 377208206 3.890000e-128 468.0
16 TraesCS3A01G353900 chr1B 79.374 703 101 30 938 1636 159162290 159162952 3.030000e-124 455.0
17 TraesCS3A01G353900 chr1D 79.775 445 50 29 938 1378 107614543 107614135 1.170000e-73 287.0
18 TraesCS3A01G353900 chr2B 100.000 29 0 0 1970 1998 123098323 123098295 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G353900 chr3A 601535928 601538506 2578 True 4763.000000 4763 100.0000 1 2579 1 chr3A.!!$R1 2578
1 TraesCS3A01G353900 chr3D 459499102 459500913 1811 False 506.666667 893 84.0110 972 2579 3 chr3D.!!$F2 1607
2 TraesCS3A01G353900 chr3D 459485619 459486967 1348 False 238.880000 496 93.3172 1 972 5 chr3D.!!$F1 971
3 TraesCS3A01G353900 chr3B 607412911 607416397 3486 False 347.860000 630 89.0044 1 1611 5 chr3B.!!$F1 1610
4 TraesCS3A01G353900 chr1A 110159782 110160447 665 True 470.000000 470 79.6590 937 1636 1 chr1A.!!$R1 699
5 TraesCS3A01G353900 chr5B 377207580 377208206 626 False 468.000000 468 80.4280 938 1584 1 chr5B.!!$F1 646
6 TraesCS3A01G353900 chr1B 159162290 159162952 662 False 455.000000 455 79.3740 938 1636 1 chr1B.!!$F1 698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 1205 0.179108 GCCCACACGAGCTAACCTAG 60.179 60.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1748 4277 0.380733 GCACGCCTATGCTTTTACCC 59.619 55.0 0.0 0.0 42.62 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 1.174783 GGTCGAAGAGGTGCTACTGA 58.825 55.000 0.00 0.00 36.95 3.41
107 108 1.133407 GGTCGAAGAGGTGCTACTGAG 59.867 57.143 0.00 0.00 36.95 3.35
108 109 1.813786 GTCGAAGAGGTGCTACTGAGT 59.186 52.381 0.00 0.00 36.95 3.41
136 147 7.704578 ACTGACTAGTAGTGATAAGCTTTCA 57.295 36.000 7.76 5.75 34.74 2.69
137 148 7.767261 ACTGACTAGTAGTGATAAGCTTTCAG 58.233 38.462 7.76 9.45 34.74 3.02
187 284 4.549680 CGCTTGATCATCGATTTCAGACAC 60.550 45.833 11.14 0.00 0.00 3.67
229 326 5.155161 AGGGTGATAATAGACATGGCAGTA 58.845 41.667 0.00 0.00 0.00 2.74
350 448 3.371273 GCTCGTTAACCCCTAAATCCCTT 60.371 47.826 0.00 0.00 0.00 3.95
439 537 2.897350 GCCGCCGCTTCTTGCTAT 60.897 61.111 0.00 0.00 40.11 2.97
538 1024 4.457834 TTCTTCATCTCGTCTTCCTTCC 57.542 45.455 0.00 0.00 0.00 3.46
564 1065 0.541998 ATCACGAGTCCAGTCCACCA 60.542 55.000 0.00 0.00 0.00 4.17
602 1103 0.675522 GGCTACTTGCGGGCTGTAAA 60.676 55.000 0.00 0.00 44.05 2.01
603 1104 0.446616 GCTACTTGCGGGCTGTAAAC 59.553 55.000 0.00 0.00 0.00 2.01
628 1129 0.251341 GCTGGTGGGTCTGTTTGGAT 60.251 55.000 0.00 0.00 0.00 3.41
629 1130 1.826385 CTGGTGGGTCTGTTTGGATC 58.174 55.000 0.00 0.00 0.00 3.36
630 1131 0.404040 TGGTGGGTCTGTTTGGATCC 59.596 55.000 4.20 4.20 37.04 3.36
689 1190 2.422803 GCCCATTAGTGACAATAGCCCA 60.423 50.000 0.00 0.00 0.00 5.36
702 1203 0.613853 TAGCCCACACGAGCTAACCT 60.614 55.000 0.00 0.00 38.61 3.50
703 1204 0.613853 AGCCCACACGAGCTAACCTA 60.614 55.000 0.00 0.00 37.64 3.08
704 1205 0.179108 GCCCACACGAGCTAACCTAG 60.179 60.000 0.00 0.00 0.00 3.02
705 1206 0.460311 CCCACACGAGCTAACCTAGG 59.540 60.000 7.41 7.41 0.00 3.02
707 1208 1.549170 CCACACGAGCTAACCTAGGTT 59.451 52.381 29.46 29.46 41.65 3.50
708 1209 2.416972 CCACACGAGCTAACCTAGGTTC 60.417 54.545 30.38 17.14 39.31 3.62
709 1210 2.492484 CACACGAGCTAACCTAGGTTCT 59.508 50.000 30.38 21.61 39.31 3.01
710 1211 3.056749 CACACGAGCTAACCTAGGTTCTT 60.057 47.826 30.38 16.67 39.31 2.52
711 1212 3.193056 ACACGAGCTAACCTAGGTTCTTC 59.807 47.826 30.38 22.25 39.31 2.87
712 1213 3.444388 CACGAGCTAACCTAGGTTCTTCT 59.556 47.826 30.38 23.00 39.31 2.85
713 1214 3.695556 ACGAGCTAACCTAGGTTCTTCTC 59.304 47.826 30.38 27.36 39.31 2.87
722 1223 9.210329 CTAACCTAGGTTCTTCTCTTTTTCTTC 57.790 37.037 30.38 0.00 39.31 2.87
726 1227 4.168088 AGGTTCTTCTCTTTTTCTTCCCCA 59.832 41.667 0.00 0.00 0.00 4.96
738 1239 4.414337 TTCTTCCCCACAAAAATGGTTG 57.586 40.909 0.00 0.00 38.16 3.77
739 1240 3.379452 TCTTCCCCACAAAAATGGTTGT 58.621 40.909 0.00 0.00 42.48 3.32
750 1252 5.474876 ACAAAAATGGTTGTTTTCTTGCCAA 59.525 32.000 0.00 0.00 38.60 4.52
825 1360 7.092623 TGGAAATCAAGTTATACTTAGGCAGGA 60.093 37.037 0.00 0.00 36.03 3.86
834 1369 3.205784 ACTTAGGCAGGAGATCATTGC 57.794 47.619 7.37 7.37 37.11 3.56
889 3385 5.186797 ACCAATCAATTCCGGCTAAAAATCA 59.813 36.000 0.00 0.00 0.00 2.57
984 3482 8.945481 TCTCTCTATATATAACCGACTACAGC 57.055 38.462 0.00 0.00 0.00 4.40
1087 3586 4.752879 ACAACGACCCGGATGGCG 62.753 66.667 0.73 2.84 37.83 5.69
1220 3719 7.663493 CCAAATTTTGAAGTCCTCTAGAGTCTT 59.337 37.037 18.42 19.47 0.00 3.01
1227 3726 6.894654 TGAAGTCCTCTAGAGTCTTGATTGAT 59.105 38.462 23.19 6.24 0.00 2.57
1228 3727 8.055790 TGAAGTCCTCTAGAGTCTTGATTGATA 58.944 37.037 23.19 6.50 0.00 2.15
1229 3728 9.077885 GAAGTCCTCTAGAGTCTTGATTGATAT 57.922 37.037 23.19 5.75 0.00 1.63
1355 3857 7.758609 TCATGTTGGGACTTATATGGATCATT 58.241 34.615 0.00 0.00 0.00 2.57
1382 3884 3.863142 AATTGCAGTTGAAGATGGAGC 57.137 42.857 0.00 0.00 0.00 4.70
1405 3913 2.425143 TCCTCCAACATGCTTCCATC 57.575 50.000 0.00 0.00 0.00 3.51
1406 3914 1.634973 TCCTCCAACATGCTTCCATCA 59.365 47.619 0.00 0.00 0.00 3.07
1504 4012 3.181507 CGATCAATGTTGTTGTGCCTAGG 60.182 47.826 3.67 3.67 0.00 3.02
1604 4112 3.555966 ACTACAATTGGGCCTCTTATGC 58.444 45.455 10.83 0.00 0.00 3.14
1612 4120 1.658673 GCCTCTTATGCCATGCAGC 59.341 57.895 0.00 0.00 43.65 5.25
1619 4127 1.066471 TATGCCATGCAGCCCAGATA 58.934 50.000 0.00 0.00 43.65 1.98
1627 4135 3.475566 TGCAGCCCAGATATGTTACTC 57.524 47.619 0.00 0.00 0.00 2.59
1636 4144 5.860941 CAGATATGTTACTCTGGTGAGGT 57.139 43.478 0.00 0.00 44.29 3.85
1637 4145 5.595885 CAGATATGTTACTCTGGTGAGGTG 58.404 45.833 0.00 0.00 44.29 4.00
1638 4146 2.770164 ATGTTACTCTGGTGAGGTGC 57.230 50.000 0.00 0.00 44.29 5.01
1655 4184 2.802247 GGTGCCAAAAATCTTGCTTGTC 59.198 45.455 0.00 0.00 0.00 3.18
1661 4190 6.479660 TGCCAAAAATCTTGCTTGTCTTTTAG 59.520 34.615 0.00 0.00 0.00 1.85
1662 4191 6.479990 GCCAAAAATCTTGCTTGTCTTTTAGT 59.520 34.615 0.00 0.00 0.00 2.24
1663 4192 7.651704 GCCAAAAATCTTGCTTGTCTTTTAGTA 59.348 33.333 0.00 0.00 0.00 1.82
1664 4193 9.185192 CCAAAAATCTTGCTTGTCTTTTAGTAG 57.815 33.333 0.00 0.00 0.00 2.57
1665 4194 9.736023 CAAAAATCTTGCTTGTCTTTTAGTAGT 57.264 29.630 0.00 0.00 0.00 2.73
1668 4197 9.555727 AAATCTTGCTTGTCTTTTAGTAGTACA 57.444 29.630 2.52 0.00 0.00 2.90
1693 4222 9.942850 CATGGTTAATAATTCCCTTTGAAAAGT 57.057 29.630 2.33 0.00 36.33 2.66
1699 4228 8.552083 AATAATTCCCTTTGAAAAGTCAATGC 57.448 30.769 2.33 0.00 43.29 3.56
1708 4237 8.277713 CCTTTGAAAAGTCAATGCTTTACATTG 58.722 33.333 11.28 11.28 46.91 2.82
1747 4276 5.418310 TCGATTTGTTTGAACTCTCAACC 57.582 39.130 0.00 0.00 41.34 3.77
1748 4277 4.025229 TCGATTTGTTTGAACTCTCAACCG 60.025 41.667 0.00 0.00 41.34 4.44
1749 4278 4.537015 GATTTGTTTGAACTCTCAACCGG 58.463 43.478 0.00 0.00 41.34 5.28
1750 4279 1.961793 TGTTTGAACTCTCAACCGGG 58.038 50.000 6.32 0.00 41.34 5.73
1755 4493 3.842007 TGAACTCTCAACCGGGTAAAA 57.158 42.857 6.32 0.00 0.00 1.52
1761 4499 3.869065 TCTCAACCGGGTAAAAGCATAG 58.131 45.455 6.32 0.00 0.00 2.23
1771 4509 4.506255 AAGCATAGGCGTGCCCCC 62.506 66.667 7.39 0.00 46.19 5.40
1773 4511 4.586235 GCATAGGCGTGCCCCCAT 62.586 66.667 7.39 0.00 39.18 4.00
1791 4529 6.608808 GCCCCCATAGATGCTATAAAAATCAT 59.391 38.462 0.00 0.00 0.00 2.45
1794 4532 9.911788 CCCCATAGATGCTATAAAAATCATAGT 57.088 33.333 0.00 0.00 0.00 2.12
1800 4538 9.565090 AGATGCTATAAAAATCATAGTCAAGCA 57.435 29.630 0.00 0.00 40.18 3.91
1801 4539 9.823098 GATGCTATAAAAATCATAGTCAAGCAG 57.177 33.333 0.00 0.00 39.36 4.24
1802 4540 7.642669 TGCTATAAAAATCATAGTCAAGCAGC 58.357 34.615 0.00 0.00 32.84 5.25
1803 4541 7.282901 TGCTATAAAAATCATAGTCAAGCAGCA 59.717 33.333 0.00 0.00 32.84 4.41
1804 4542 7.802251 GCTATAAAAATCATAGTCAAGCAGCAG 59.198 37.037 0.00 0.00 0.00 4.24
1805 4543 5.972107 AAAAATCATAGTCAAGCAGCAGT 57.028 34.783 0.00 0.00 0.00 4.40
1806 4544 4.959596 AAATCATAGTCAAGCAGCAGTG 57.040 40.909 0.00 0.00 0.00 3.66
1807 4545 3.623906 ATCATAGTCAAGCAGCAGTGT 57.376 42.857 0.00 0.00 0.00 3.55
1808 4546 4.743057 ATCATAGTCAAGCAGCAGTGTA 57.257 40.909 0.00 0.00 0.00 2.90
1809 4547 3.849911 TCATAGTCAAGCAGCAGTGTAC 58.150 45.455 0.00 0.00 0.00 2.90
1810 4548 3.258123 TCATAGTCAAGCAGCAGTGTACA 59.742 43.478 0.00 0.00 0.00 2.90
1811 4549 2.847327 AGTCAAGCAGCAGTGTACAT 57.153 45.000 0.00 0.00 0.00 2.29
1812 4550 3.961480 AGTCAAGCAGCAGTGTACATA 57.039 42.857 0.00 0.00 0.00 2.29
1813 4551 4.271696 AGTCAAGCAGCAGTGTACATAA 57.728 40.909 0.00 0.00 0.00 1.90
1814 4552 4.641396 AGTCAAGCAGCAGTGTACATAAA 58.359 39.130 0.00 0.00 0.00 1.40
1815 4553 5.063204 AGTCAAGCAGCAGTGTACATAAAA 58.937 37.500 0.00 0.00 0.00 1.52
1816 4554 5.530915 AGTCAAGCAGCAGTGTACATAAAAA 59.469 36.000 0.00 0.00 0.00 1.94
1817 4555 5.853282 GTCAAGCAGCAGTGTACATAAAAAG 59.147 40.000 0.00 0.00 0.00 2.27
1818 4556 5.530915 TCAAGCAGCAGTGTACATAAAAAGT 59.469 36.000 0.00 0.00 0.00 2.66
1819 4557 6.039270 TCAAGCAGCAGTGTACATAAAAAGTT 59.961 34.615 0.00 0.00 0.00 2.66
1820 4558 6.002062 AGCAGCAGTGTACATAAAAAGTTC 57.998 37.500 0.00 0.00 0.00 3.01
1821 4559 5.765182 AGCAGCAGTGTACATAAAAAGTTCT 59.235 36.000 0.00 0.00 0.00 3.01
1822 4560 6.263168 AGCAGCAGTGTACATAAAAAGTTCTT 59.737 34.615 0.00 0.00 0.00 2.52
1874 4613 4.245660 CCATACATAAGTGTCATAGGCCG 58.754 47.826 0.00 0.00 39.77 6.13
1878 4617 5.546621 ACATAAGTGTCATAGGCCGTTAT 57.453 39.130 0.00 0.00 31.41 1.89
1881 4620 7.502696 ACATAAGTGTCATAGGCCGTTATAAA 58.497 34.615 0.00 0.00 31.41 1.40
1938 4677 4.487714 ACAAAGAGTGTGGAAGTCTTCA 57.512 40.909 14.49 0.00 46.04 3.02
1939 4678 5.041191 ACAAAGAGTGTGGAAGTCTTCAT 57.959 39.130 14.49 0.00 46.04 2.57
1942 4681 3.242867 AGAGTGTGGAAGTCTTCATCCA 58.757 45.455 14.49 1.21 43.32 3.41
1943 4682 3.648067 AGAGTGTGGAAGTCTTCATCCAA 59.352 43.478 14.49 0.00 46.78 3.53
1944 4683 4.288105 AGAGTGTGGAAGTCTTCATCCAAT 59.712 41.667 14.49 6.50 46.78 3.16
1946 4685 6.157645 AGAGTGTGGAAGTCTTCATCCAATAT 59.842 38.462 14.49 1.86 46.78 1.28
1949 4688 5.191522 TGTGGAAGTCTTCATCCAATATCCA 59.808 40.000 14.49 0.00 46.78 3.41
1950 4689 6.126390 TGTGGAAGTCTTCATCCAATATCCAT 60.126 38.462 14.49 0.00 46.78 3.41
1951 4690 6.774656 GTGGAAGTCTTCATCCAATATCCATT 59.225 38.462 14.49 0.00 46.78 3.16
1953 4692 7.000472 GGAAGTCTTCATCCAATATCCATTGA 59.000 38.462 14.49 0.00 43.67 2.57
1955 4694 6.302269 AGTCTTCATCCAATATCCATTGACC 58.698 40.000 0.00 0.00 43.67 4.02
1957 4696 4.972751 TCATCCAATATCCATTGACCGA 57.027 40.909 0.00 0.00 43.67 4.69
1959 4698 4.347876 TCATCCAATATCCATTGACCGAGT 59.652 41.667 0.00 0.00 43.67 4.18
1961 4700 6.213397 TCATCCAATATCCATTGACCGAGTAT 59.787 38.462 0.00 0.00 43.67 2.12
1963 4702 7.170393 TCCAATATCCATTGACCGAGTATAG 57.830 40.000 0.00 0.00 43.67 1.31
1965 4704 6.813649 CCAATATCCATTGACCGAGTATAGTG 59.186 42.308 0.00 0.00 43.67 2.74
1967 4706 5.713792 ATCCATTGACCGAGTATAGTGAG 57.286 43.478 0.00 0.00 0.00 3.51
1968 4707 3.318275 TCCATTGACCGAGTATAGTGAGC 59.682 47.826 0.00 0.00 0.00 4.26
1969 4708 3.300857 CATTGACCGAGTATAGTGAGCG 58.699 50.000 0.00 0.00 0.00 5.03
1970 4709 1.306148 TGACCGAGTATAGTGAGCGG 58.694 55.000 0.00 0.00 46.83 5.52
1998 4745 3.537206 AAGCAGCGGCCGAGAAGTT 62.537 57.895 33.48 12.03 42.56 2.66
1999 4746 3.793144 GCAGCGGCCGAGAAGTTG 61.793 66.667 33.48 16.60 0.00 3.16
2000 4747 3.793144 CAGCGGCCGAGAAGTTGC 61.793 66.667 33.48 8.36 0.00 4.17
2019 4766 2.053627 GCCAATGCAAACAAGAAGACG 58.946 47.619 0.00 0.00 37.47 4.18
2021 4768 2.287788 CCAATGCAAACAAGAAGACGCT 60.288 45.455 0.00 0.00 0.00 5.07
2023 4770 0.029300 TGCAAACAAGAAGACGCTGC 59.971 50.000 0.00 0.00 0.00 5.25
2026 4773 1.507141 AAACAAGAAGACGCTGCCGG 61.507 55.000 0.00 0.00 39.22 6.13
2040 4787 4.536687 CCGGCCGCAAGATTTCGC 62.537 66.667 22.85 0.00 43.02 4.70
2042 4789 3.439540 GGCCGCAAGATTTCGCCA 61.440 61.111 0.00 0.00 43.02 5.69
2045 4792 1.064621 CCGCAAGATTTCGCCATGG 59.935 57.895 7.63 7.63 43.02 3.66
2083 4831 3.559655 GTGACGCTAACATCATAATGGCA 59.440 43.478 0.00 0.00 37.19 4.92
2085 4833 2.549754 ACGCTAACATCATAATGGCAGC 59.450 45.455 0.00 0.00 39.01 5.25
2086 4834 2.095567 CGCTAACATCATAATGGCAGCC 60.096 50.000 3.66 3.66 39.12 4.85
2091 4839 2.313317 CATCATAATGGCAGCCAAGGT 58.687 47.619 20.84 9.62 36.95 3.50
2093 4841 1.005805 TCATAATGGCAGCCAAGGTGT 59.994 47.619 20.84 0.00 36.95 4.16
2094 4842 1.826720 CATAATGGCAGCCAAGGTGTT 59.173 47.619 20.84 10.53 36.95 3.32
2095 4843 2.008242 TAATGGCAGCCAAGGTGTTT 57.992 45.000 20.84 9.73 36.95 2.83
2096 4844 0.393820 AATGGCAGCCAAGGTGTTTG 59.606 50.000 20.84 0.00 36.95 2.93
2098 4846 0.975040 TGGCAGCCAAGGTGTTTGTT 60.975 50.000 13.33 0.00 34.87 2.83
2100 4848 0.530431 GCAGCCAAGGTGTTTGTTGG 60.530 55.000 0.00 0.00 45.30 3.77
2104 4852 2.092103 AGCCAAGGTGTTTGTTGGAGTA 60.092 45.455 5.28 0.00 45.35 2.59
2105 4853 2.691011 GCCAAGGTGTTTGTTGGAGTAA 59.309 45.455 5.28 0.00 45.35 2.24
2107 4855 4.521256 GCCAAGGTGTTTGTTGGAGTAATA 59.479 41.667 5.28 0.00 45.35 0.98
2108 4856 5.335661 GCCAAGGTGTTTGTTGGAGTAATAG 60.336 44.000 5.28 0.00 45.35 1.73
2109 4857 5.768164 CCAAGGTGTTTGTTGGAGTAATAGT 59.232 40.000 0.00 0.00 45.35 2.12
2110 4858 6.938030 CCAAGGTGTTTGTTGGAGTAATAGTA 59.062 38.462 0.00 0.00 45.35 1.82
2111 4859 7.094933 CCAAGGTGTTTGTTGGAGTAATAGTAC 60.095 40.741 0.00 0.00 45.35 2.73
2112 4860 7.069877 AGGTGTTTGTTGGAGTAATAGTACA 57.930 36.000 2.81 0.00 32.12 2.90
2113 4861 7.159372 AGGTGTTTGTTGGAGTAATAGTACAG 58.841 38.462 2.81 0.00 32.12 2.74
2114 4862 6.932960 GGTGTTTGTTGGAGTAATAGTACAGT 59.067 38.462 2.81 0.00 32.12 3.55
2115 4863 7.443272 GGTGTTTGTTGGAGTAATAGTACAGTT 59.557 37.037 2.81 0.00 32.12 3.16
2117 4865 8.426489 TGTTTGTTGGAGTAATAGTACAGTTCT 58.574 33.333 2.81 0.00 32.12 3.01
2118 4866 9.918630 GTTTGTTGGAGTAATAGTACAGTTCTA 57.081 33.333 2.81 0.00 32.12 2.10
2133 4881 9.998106 AGTACAGTTCTATAACAAATTGACACT 57.002 29.630 0.00 0.00 38.12 3.55
2159 4938 7.329588 AGGAGTTGTAACAACCTAAAACTTG 57.670 36.000 9.06 0.00 36.64 3.16
2167 4946 5.079689 ACAACCTAAAACTTGTGTTTGGG 57.920 39.130 8.55 8.35 44.70 4.12
2179 4958 4.993029 TGTGTTTGGGTTTTCTAACTGG 57.007 40.909 0.00 0.00 34.59 4.00
2183 4962 4.517453 TGTTTGGGTTTTCTAACTGGATCG 59.483 41.667 0.00 0.00 34.59 3.69
2264 5045 5.923684 ACCAATATAGGTTTTTGCACAAACG 59.076 36.000 19.30 7.92 39.34 3.60
2300 5081 1.280998 ACAGATTTAAGTGGACCGGGG 59.719 52.381 6.32 0.00 0.00 5.73
2310 5091 1.074248 GGACCGGGGCAGAAAGAAA 59.926 57.895 6.32 0.00 0.00 2.52
2312 5093 1.228459 ACCGGGGCAGAAAGAAACC 60.228 57.895 6.32 0.00 0.00 3.27
2314 5095 0.611896 CCGGGGCAGAAAGAAACCAT 60.612 55.000 0.00 0.00 0.00 3.55
2365 5146 2.663852 GTGCAACTGTACCGGCGT 60.664 61.111 6.01 0.00 0.00 5.68
2366 5147 2.356553 TGCAACTGTACCGGCGTC 60.357 61.111 6.01 0.00 0.00 5.19
2367 5148 2.356553 GCAACTGTACCGGCGTCA 60.357 61.111 6.01 1.14 0.00 4.35
2368 5149 2.380410 GCAACTGTACCGGCGTCAG 61.380 63.158 17.58 17.58 35.60 3.51
2369 5150 2.048503 AACTGTACCGGCGTCAGC 60.049 61.111 18.58 3.23 44.18 4.26
2385 5166 2.481441 TCAGCATGAATACCACCCTCT 58.519 47.619 0.00 0.00 45.97 3.69
2397 5178 4.271816 CCCTCTCCGGCGACATCG 62.272 72.222 9.30 0.00 43.27 3.84
2427 5208 3.612371 AAGCGGACGTCGTCTCTGC 62.612 63.158 23.69 22.54 41.72 4.26
2454 5235 2.787249 CGCTGGCGGAGAAACATG 59.213 61.111 7.12 0.00 35.56 3.21
2455 5236 2.486966 GCTGGCGGAGAAACATGC 59.513 61.111 0.00 0.00 0.00 4.06
2458 5239 3.502572 GGCGGAGAAACATGCCTC 58.497 61.111 0.00 0.00 44.16 4.70
2569 5363 8.906867 TGTACGTAGCACTACTTTTCCTATAAT 58.093 33.333 0.00 0.00 34.04 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.826428 TCTGATAAGAATGCGTGCCTC 58.174 47.619 0.00 0.00 0.00 4.70
106 107 8.707449 AGCTTATCACTACTAGTCAGTACTACT 58.293 37.037 0.00 2.79 37.15 2.57
107 108 8.891671 AGCTTATCACTACTAGTCAGTACTAC 57.108 38.462 0.00 0.00 37.15 2.73
108 109 9.902684 AAAGCTTATCACTACTAGTCAGTACTA 57.097 33.333 0.00 0.00 37.15 1.82
187 284 6.042093 TCACCCTCTACTATTTCTATTGCTGG 59.958 42.308 0.00 0.00 0.00 4.85
229 326 0.251341 GCCAACATCCAAGGTGAGGT 60.251 55.000 0.00 0.00 0.00 3.85
257 354 1.226660 CGCGCCATCCAATCCAAAC 60.227 57.895 0.00 0.00 0.00 2.93
350 448 3.565482 GCGGAGAAGGATGATTATTGCAA 59.435 43.478 0.00 0.00 0.00 4.08
504 608 1.504359 TGAAGAAAACTACACGGCCG 58.496 50.000 26.86 26.86 0.00 6.13
538 1024 0.812811 CTGGACTCGTGATGGCCATG 60.813 60.000 26.56 11.08 0.00 3.66
564 1065 1.304282 CACCAGCCCACTGCCTATT 59.696 57.895 0.00 0.00 43.02 1.73
602 1103 3.626924 GACCCACCAGCACTCGGT 61.627 66.667 0.00 0.00 37.16 4.69
603 1104 3.314331 AGACCCACCAGCACTCGG 61.314 66.667 0.00 0.00 0.00 4.63
628 1129 1.002868 GCTGCAGCAAAGAGGAGGA 60.003 57.895 33.36 0.00 41.59 3.71
629 1130 2.045131 GGCTGCAGCAAAGAGGAGG 61.045 63.158 37.63 0.00 44.36 4.30
630 1131 2.045131 GGGCTGCAGCAAAGAGGAG 61.045 63.158 37.63 0.00 44.36 3.69
689 1190 2.805194 AGAACCTAGGTTAGCTCGTGT 58.195 47.619 27.16 1.31 38.60 4.49
702 1203 5.371472 TGGGGAAGAAAAAGAGAAGAACCTA 59.629 40.000 0.00 0.00 0.00 3.08
703 1204 4.168088 TGGGGAAGAAAAAGAGAAGAACCT 59.832 41.667 0.00 0.00 0.00 3.50
704 1205 4.278669 GTGGGGAAGAAAAAGAGAAGAACC 59.721 45.833 0.00 0.00 0.00 3.62
705 1206 4.887655 TGTGGGGAAGAAAAAGAGAAGAAC 59.112 41.667 0.00 0.00 0.00 3.01
707 1208 4.788925 TGTGGGGAAGAAAAAGAGAAGA 57.211 40.909 0.00 0.00 0.00 2.87
708 1209 5.852282 TTTGTGGGGAAGAAAAAGAGAAG 57.148 39.130 0.00 0.00 0.00 2.85
709 1210 6.613153 TTTTTGTGGGGAAGAAAAAGAGAA 57.387 33.333 0.00 0.00 36.42 2.87
710 1211 6.407979 CCATTTTTGTGGGGAAGAAAAAGAGA 60.408 38.462 0.00 0.00 42.36 3.10
711 1212 5.759763 CCATTTTTGTGGGGAAGAAAAAGAG 59.240 40.000 0.00 0.00 42.36 2.85
712 1213 5.190726 ACCATTTTTGTGGGGAAGAAAAAGA 59.809 36.000 0.00 0.00 42.36 2.52
713 1214 5.436175 ACCATTTTTGTGGGGAAGAAAAAG 58.564 37.500 0.00 0.00 42.36 2.27
722 1223 4.522114 AGAAAACAACCATTTTTGTGGGG 58.478 39.130 0.00 0.00 43.77 4.96
726 1227 5.006386 TGGCAAGAAAACAACCATTTTTGT 58.994 33.333 0.00 0.00 41.62 2.83
784 1319 4.165180 TGATTTCCACCGAATATTCCCTCA 59.835 41.667 9.87 0.00 0.00 3.86
825 1360 4.021916 CCTCCTTTTCTTGGCAATGATCT 58.978 43.478 0.00 0.00 0.00 2.75
834 1369 6.301169 AGTGTAGTATCCTCCTTTTCTTGG 57.699 41.667 0.00 0.00 0.00 3.61
981 3479 0.798776 CGTAAGCTTTGGACCTGCTG 59.201 55.000 3.20 0.00 37.11 4.41
984 3482 2.754946 TACCGTAAGCTTTGGACCTG 57.245 50.000 20.68 3.22 0.00 4.00
1087 3586 1.228533 TAAGAACCACGAAAACCGCC 58.771 50.000 0.00 0.00 43.32 6.13
1180 3679 7.094508 TCAAAATTTGGCATCACGTGTATAT 57.905 32.000 16.51 0.00 0.00 0.86
1181 3680 6.502136 TCAAAATTTGGCATCACGTGTATA 57.498 33.333 16.51 0.00 0.00 1.47
1182 3681 5.384063 TCAAAATTTGGCATCACGTGTAT 57.616 34.783 16.51 5.06 0.00 2.29
1183 3682 4.837896 TCAAAATTTGGCATCACGTGTA 57.162 36.364 16.51 2.58 0.00 2.90
1184 3683 3.724508 TCAAAATTTGGCATCACGTGT 57.275 38.095 16.51 0.00 0.00 4.49
1305 3807 9.956720 GAATTAAGCAATTAATATCAGCACACT 57.043 29.630 0.00 0.00 34.44 3.55
1306 3808 9.734620 TGAATTAAGCAATTAATATCAGCACAC 57.265 29.630 0.00 0.00 34.44 3.82
1355 3857 5.392272 CCATCTTCAACTGCAATTTCGATCA 60.392 40.000 0.00 0.00 0.00 2.92
1382 3884 1.672881 GGAAGCATGTTGGAGGATTCG 59.327 52.381 0.00 0.00 0.00 3.34
1405 3913 3.855689 ACGATCTTGGCATTTTTCCTG 57.144 42.857 0.00 0.00 0.00 3.86
1406 3914 3.614870 GCAACGATCTTGGCATTTTTCCT 60.615 43.478 0.00 0.00 0.00 3.36
1585 4093 2.944129 GGCATAAGAGGCCCAATTGTA 58.056 47.619 0.00 0.00 45.87 2.41
1586 4094 1.780503 GGCATAAGAGGCCCAATTGT 58.219 50.000 0.00 0.00 45.87 2.71
1604 4112 1.991121 AACATATCTGGGCTGCATGG 58.009 50.000 0.50 0.00 0.00 3.66
1619 4127 1.279271 GGCACCTCACCAGAGTAACAT 59.721 52.381 0.00 0.00 40.40 2.71
1627 4135 2.242043 AGATTTTTGGCACCTCACCAG 58.758 47.619 0.00 0.00 38.73 4.00
1636 4144 4.405116 AAGACAAGCAAGATTTTTGGCA 57.595 36.364 0.00 0.00 32.21 4.92
1637 4145 5.739752 AAAAGACAAGCAAGATTTTTGGC 57.260 34.783 0.00 0.00 0.00 4.52
1638 4146 9.185192 CTACTAAAAGACAAGCAAGATTTTTGG 57.815 33.333 0.00 0.00 0.00 3.28
1663 4192 9.762381 TTCAAAGGGAATTATTAACCATGTACT 57.238 29.630 0.00 0.00 0.00 2.73
1666 4195 9.942850 CTTTTCAAAGGGAATTATTAACCATGT 57.057 29.630 0.00 0.00 34.91 3.21
1667 4196 9.942850 ACTTTTCAAAGGGAATTATTAACCATG 57.057 29.630 4.36 0.00 40.31 3.66
1681 4210 6.279882 TGTAAAGCATTGACTTTTCAAAGGG 58.720 36.000 10.06 0.00 45.01 3.95
1699 4228 7.937387 CATCAACGATGTACACAATGTAAAG 57.063 36.000 0.00 0.00 34.21 1.85
1713 4242 5.850653 TCAAACAAATCGAACATCAACGATG 59.149 36.000 0.00 2.45 46.18 3.84
1716 4245 5.681105 AGTTCAAACAAATCGAACATCAACG 59.319 36.000 0.00 0.00 41.17 4.10
1747 4276 0.655733 CACGCCTATGCTTTTACCCG 59.344 55.000 0.00 0.00 34.43 5.28
1748 4277 0.380733 GCACGCCTATGCTTTTACCC 59.619 55.000 0.00 0.00 42.62 3.69
1749 4278 0.380733 GGCACGCCTATGCTTTTACC 59.619 55.000 0.00 0.00 45.38 2.85
1750 4279 0.380733 GGGCACGCCTATGCTTTTAC 59.619 55.000 8.20 0.00 45.38 2.01
1791 4529 3.961480 ATGTACACTGCTGCTTGACTA 57.039 42.857 0.00 0.00 0.00 2.59
1794 4532 5.530915 ACTTTTTATGTACACTGCTGCTTGA 59.469 36.000 0.00 0.00 0.00 3.02
1795 4533 5.762045 ACTTTTTATGTACACTGCTGCTTG 58.238 37.500 0.00 0.43 0.00 4.01
1796 4534 6.263168 AGAACTTTTTATGTACACTGCTGCTT 59.737 34.615 0.00 0.00 0.00 3.91
1797 4535 5.765182 AGAACTTTTTATGTACACTGCTGCT 59.235 36.000 0.00 0.00 0.00 4.24
1798 4536 6.002062 AGAACTTTTTATGTACACTGCTGC 57.998 37.500 0.00 0.00 0.00 5.25
1799 4537 8.856490 AAAAGAACTTTTTATGTACACTGCTG 57.144 30.769 0.00 0.00 39.52 4.41
1854 4592 5.546621 AACGGCCTATGACACTTATGTAT 57.453 39.130 0.00 0.00 39.95 2.29
1857 4595 7.439955 TGTTTATAACGGCCTATGACACTTATG 59.560 37.037 0.00 0.00 0.00 1.90
1864 4603 5.178809 GGATGTGTTTATAACGGCCTATGAC 59.821 44.000 0.00 0.00 0.00 3.06
1918 4657 4.453819 GGATGAAGACTTCCACACTCTTTG 59.546 45.833 12.66 0.00 39.31 2.77
1922 4661 3.685139 TGGATGAAGACTTCCACACTC 57.315 47.619 12.66 2.38 42.70 3.51
1926 4665 5.684704 TGGATATTGGATGAAGACTTCCAC 58.315 41.667 12.66 6.48 45.66 4.02
1928 4667 7.000472 TCAATGGATATTGGATGAAGACTTCC 59.000 38.462 12.66 0.00 43.11 3.46
1930 4669 6.774656 GGTCAATGGATATTGGATGAAGACTT 59.225 38.462 0.00 0.00 43.11 3.01
1931 4670 6.302269 GGTCAATGGATATTGGATGAAGACT 58.698 40.000 0.00 0.00 43.11 3.24
1932 4671 5.180117 CGGTCAATGGATATTGGATGAAGAC 59.820 44.000 0.00 0.00 43.11 3.01
1933 4672 5.071653 TCGGTCAATGGATATTGGATGAAGA 59.928 40.000 0.00 0.00 43.11 2.87
1934 4673 5.308014 TCGGTCAATGGATATTGGATGAAG 58.692 41.667 0.00 0.00 43.11 3.02
1936 4675 4.347876 ACTCGGTCAATGGATATTGGATGA 59.652 41.667 0.00 0.00 43.11 2.92
1938 4677 4.982241 ACTCGGTCAATGGATATTGGAT 57.018 40.909 0.00 0.00 43.11 3.41
1939 4678 6.724441 ACTATACTCGGTCAATGGATATTGGA 59.276 38.462 0.00 0.00 43.11 3.53
1942 4681 7.577807 GCTCACTATACTCGGTCAATGGATATT 60.578 40.741 0.00 0.00 0.00 1.28
1943 4682 6.127591 GCTCACTATACTCGGTCAATGGATAT 60.128 42.308 0.00 0.00 0.00 1.63
1944 4683 5.183331 GCTCACTATACTCGGTCAATGGATA 59.817 44.000 0.00 0.00 0.00 2.59
1946 4685 3.318275 GCTCACTATACTCGGTCAATGGA 59.682 47.826 0.00 0.00 0.00 3.41
1949 4688 2.293677 CCGCTCACTATACTCGGTCAAT 59.706 50.000 0.00 0.00 35.75 2.57
1950 4689 1.674441 CCGCTCACTATACTCGGTCAA 59.326 52.381 0.00 0.00 35.75 3.18
1951 4690 1.134310 TCCGCTCACTATACTCGGTCA 60.134 52.381 0.00 0.00 40.81 4.02
1953 4692 1.595466 CTCCGCTCACTATACTCGGT 58.405 55.000 0.00 0.00 40.81 4.69
1955 4694 1.231221 AGCTCCGCTCACTATACTCG 58.769 55.000 0.00 0.00 30.62 4.18
1957 4696 2.379972 ACAAGCTCCGCTCACTATACT 58.620 47.619 0.00 0.00 38.25 2.12
1959 4698 4.994907 TTTACAAGCTCCGCTCACTATA 57.005 40.909 0.00 0.00 38.25 1.31
1961 4700 3.585862 CTTTTACAAGCTCCGCTCACTA 58.414 45.455 0.00 0.00 38.25 2.74
1963 4702 2.882742 CTTTTACAAGCTCCGCTCAC 57.117 50.000 0.00 0.00 38.25 3.51
1979 4726 2.743928 CTTCTCGGCCGCTGCTTT 60.744 61.111 23.51 0.00 37.74 3.51
1982 4729 3.793144 CAACTTCTCGGCCGCTGC 61.793 66.667 23.51 0.00 0.00 5.25
1999 4746 2.053627 CGTCTTCTTGTTTGCATTGGC 58.946 47.619 0.00 0.00 41.68 4.52
2000 4747 2.053627 GCGTCTTCTTGTTTGCATTGG 58.946 47.619 0.00 0.00 0.00 3.16
2002 4749 2.859806 GCAGCGTCTTCTTGTTTGCATT 60.860 45.455 0.00 0.00 0.00 3.56
2023 4770 4.536687 GCGAAATCTTGCGGCCGG 62.537 66.667 29.38 10.87 0.00 6.13
2029 4776 1.632422 CAACCATGGCGAAATCTTGC 58.368 50.000 13.04 0.00 0.00 4.01
2031 4778 0.532115 GGCAACCATGGCGAAATCTT 59.468 50.000 13.04 0.00 42.73 2.40
2045 4792 1.327303 TCACCTTTGACATGGGCAAC 58.673 50.000 0.00 0.00 0.00 4.17
2065 4813 2.095567 GGCTGCCATTATGATGTTAGCG 60.096 50.000 15.17 2.82 39.37 4.26
2069 4817 2.696707 CCTTGGCTGCCATTATGATGTT 59.303 45.455 24.03 0.00 31.53 2.71
2083 4831 1.341976 ACTCCAACAAACACCTTGGCT 60.342 47.619 0.00 0.00 39.56 4.75
2085 4833 5.768164 ACTATTACTCCAACAAACACCTTGG 59.232 40.000 0.00 0.00 39.56 3.61
2086 4834 6.877611 ACTATTACTCCAACAAACACCTTG 57.122 37.500 0.00 0.00 41.19 3.61
2091 4839 8.426489 AGAACTGTACTATTACTCCAACAAACA 58.574 33.333 0.00 0.00 0.00 2.83
2107 4855 9.998106 AGTGTCAATTTGTTATAGAACTGTACT 57.002 29.630 1.39 0.00 36.45 2.73
2117 4865 9.787435 ACAACTCCTAAGTGTCAATTTGTTATA 57.213 29.630 0.00 0.00 35.36 0.98
2118 4866 8.691661 ACAACTCCTAAGTGTCAATTTGTTAT 57.308 30.769 0.00 0.00 35.36 1.89
2119 4867 9.616156 TTACAACTCCTAAGTGTCAATTTGTTA 57.384 29.630 0.00 0.00 35.36 2.41
2120 4868 8.403236 GTTACAACTCCTAAGTGTCAATTTGTT 58.597 33.333 0.00 0.00 35.36 2.83
2122 4870 7.925993 TGTTACAACTCCTAAGTGTCAATTTG 58.074 34.615 0.00 0.00 35.36 2.32
2126 4874 5.818857 GGTTGTTACAACTCCTAAGTGTCAA 59.181 40.000 24.67 0.00 35.36 3.18
2127 4875 5.129815 AGGTTGTTACAACTCCTAAGTGTCA 59.870 40.000 24.67 0.00 35.36 3.58
2128 4876 5.608449 AGGTTGTTACAACTCCTAAGTGTC 58.392 41.667 24.67 6.89 35.36 3.67
2130 4878 8.340443 GTTTTAGGTTGTTACAACTCCTAAGTG 58.660 37.037 24.67 0.00 41.71 3.16
2131 4879 8.270030 AGTTTTAGGTTGTTACAACTCCTAAGT 58.730 33.333 24.67 14.76 41.71 2.24
2132 4880 8.672823 AGTTTTAGGTTGTTACAACTCCTAAG 57.327 34.615 24.67 0.00 41.71 2.18
2133 4881 8.895737 CAAGTTTTAGGTTGTTACAACTCCTAA 58.104 33.333 24.67 20.81 40.53 2.69
2135 4883 6.888088 ACAAGTTTTAGGTTGTTACAACTCCT 59.112 34.615 24.67 17.72 32.93 3.69
2136 4884 6.970613 CACAAGTTTTAGGTTGTTACAACTCC 59.029 38.462 24.67 11.74 34.62 3.85
2138 4886 7.457024 ACACAAGTTTTAGGTTGTTACAACT 57.543 32.000 24.67 14.53 34.62 3.16
2140 4888 7.599245 CCAAACACAAGTTTTAGGTTGTTACAA 59.401 33.333 0.00 0.00 45.32 2.41
2159 4938 5.562113 CGATCCAGTTAGAAAACCCAAACAC 60.562 44.000 0.00 0.00 36.15 3.32
2237 5018 6.849085 TGTGCAAAAACCTATATTGGTCAT 57.151 33.333 9.38 0.00 39.83 3.06
2285 5066 1.128809 TCTGCCCCGGTCCACTTAAA 61.129 55.000 0.00 0.00 0.00 1.52
2288 5069 2.411765 CTTTCTGCCCCGGTCCACTT 62.412 60.000 0.00 0.00 0.00 3.16
2293 5074 1.241990 GGTTTCTTTCTGCCCCGGTC 61.242 60.000 0.00 0.00 0.00 4.79
2300 5081 1.725931 CGTGCGATGGTTTCTTTCTGC 60.726 52.381 0.00 0.00 0.00 4.26
2365 5146 2.435805 GAGAGGGTGGTATTCATGCTGA 59.564 50.000 0.00 0.00 0.00 4.26
2366 5147 2.486191 GGAGAGGGTGGTATTCATGCTG 60.486 54.545 0.00 0.00 0.00 4.41
2367 5148 1.771255 GGAGAGGGTGGTATTCATGCT 59.229 52.381 0.00 0.00 0.00 3.79
2368 5149 1.541233 CGGAGAGGGTGGTATTCATGC 60.541 57.143 0.00 0.00 0.00 4.06
2369 5150 1.070758 CCGGAGAGGGTGGTATTCATG 59.929 57.143 0.00 0.00 35.97 3.07
2370 5151 1.424638 CCGGAGAGGGTGGTATTCAT 58.575 55.000 0.00 0.00 35.97 2.57
2371 5152 1.335132 GCCGGAGAGGGTGGTATTCA 61.335 60.000 5.05 0.00 41.48 2.57
2372 5153 1.446366 GCCGGAGAGGGTGGTATTC 59.554 63.158 5.05 0.00 41.48 1.75
2373 5154 2.432300 CGCCGGAGAGGGTGGTATT 61.432 63.158 5.05 0.00 41.48 1.89
2374 5155 2.838225 CGCCGGAGAGGGTGGTAT 60.838 66.667 5.05 0.00 41.48 2.73
2375 5156 4.051167 TCGCCGGAGAGGGTGGTA 62.051 66.667 5.05 0.00 41.48 3.25
2378 5159 3.432051 GATGTCGCCGGAGAGGGTG 62.432 68.421 8.65 0.00 41.48 4.61
2379 5160 3.148279 GATGTCGCCGGAGAGGGT 61.148 66.667 8.65 0.00 41.48 4.34
2380 5161 4.271816 CGATGTCGCCGGAGAGGG 62.272 72.222 8.65 0.00 41.48 4.30
2397 5178 1.375013 TCCGCTTCGCCAAACTACC 60.375 57.895 0.00 0.00 0.00 3.18
2420 5201 2.433318 GGAGGTGCACGCAGAGAC 60.433 66.667 11.45 0.00 0.00 3.36
2466 5260 1.937278 CATCAAGCTCTCATGTCGCT 58.063 50.000 0.00 0.00 35.09 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.